The pentacyclic quinoline alkaloid mersinine A, C25H28N2O9, was isolated from the leaves of Kopsia fruticosa (Ker.) A DC. The molecule has a hydroxyl group that forms a hydrogen bond with the carbonyl O atom of an adjacent molecule, which gives rise to infinite chains running along the c axis of the crystal.
Supporting information
CCDC reference: 209985
Key indicators
- Single-crystal X-ray study
- T = 168 K
- Mean (C-C) = 0.004 Å
- R factor = 0.033
- wR factor = 0.084
- Data-to-parameter ratio = 7.6
checkCIF results
No syntax errors found
ADDSYM reports no extra symmetry
General Notes
REFLT_03
From the CIF: _diffrn_reflns_theta_max 26.50
From the CIF: _reflns_number_total 2493
Count of symmetry unique reflns 2547
Completeness (_total/calc) 97.88%
TEST3: Check Friedels for noncentro structure
Estimate of Friedel pairs measured 0
Fraction of Friedel pairs measured 0.000
Are heavy atom types Z>Si present no
Please check that the estimate of the number of Friedel pairs is
correct. If it is not, please give the correct count in the
_publ_section_exptl_refinement section of the submitted CIF.
The title alkaloid was isolated from the leaves of Kopsia fruticosa (Ker.) A. DC. (Kam et al., 2001), and crystals were grown from its ether solution.
Refinement of the Flack parameter (Flack & Schwarzenbach, 1988) was suppressed by the MERG 4 command in SHELXL97 (Sheldrick, 1997) as the lack of anomalous scatterers did not allow for the absolute configuration to be determined from the X-ray measurements. The absolute configuration was taken as reported in the solution NMR study of the compound (Kam et al., 2001). That study had assumed the configuration to be that of a structurally related compound, meloscine (Bernauer et al., 1969), whose absolute configuration was determined from the X-ray structure of the brominated derivative (Oberha¨nsli, 1969). The C-bound H atoms were positioned geometrically, and were allowed to ride on their parent atoms [Uiso(H) = 1.2Ueq(C) for the aromatic, methylene and methine C atoms, and 1.5Ueq(C) for the methyl C atoms]. The hydroxyl H atom was located and refined [O9—H1o = 0.80 (4) Å].
Data collection: SMART (Bruker, 1997); cell refinement: SAINT (Bruker, 1997); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPII (Johnson, 1976); software used to prepare material for publication: SHELXL97.
(5
R,5aR,7aR,11aR,13aR)-5,5a,6,7,12,13-Hexahydro-5-hydroxy-4H,10
H-1,3,- benzodioxolo[4,5-
κ]pyrrolo[3,2,1-mn][1,8]phenanthroline-4,5,7a(10aH)- tricarboxylic acid trimethyl ester
top
Crystal data top
C25H28N2O9 | F(000) = 1056 |
Mr = 500.49 | Dx = 1.450 Mg m−3 |
Monoclinic, C2 | Mo Kα radiation, λ = 0.71073 Å |
a = 29.005 (2) Å | Cell parameters from 5856 reflections |
b = 8.5430 (6) Å | θ = 2.2–26.5° |
c = 9.3081 (7) Å | µ = 0.11 mm−1 |
β = 96.163 (1)° | T = 168 K |
V = 2293.1 (3) Å3 | Plate, colorless |
Z = 4 | 0.50 × 0.16 × 0.14 mm |
Data collection top
Bruker AXS CCD area-detector diffractometer | 2173 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.039 |
Graphite monochromator | θmax = 26.5°, θmin = 2.2° |
ω scans | h = −35→36 |
15060 measured reflections | k = −10→5 |
2493 independent reflections | l = −11→11 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.033 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.084 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.061P)2] where P = (Fo2 + 2Fc2)/3 |
2493 reflections | (Δ/σ)max = 0.001 |
329 parameters | Δρmax = 0.20 e Å−3 |
1 restraint | Δρmin = −0.18 e Å−3 |
Crystal data top
C25H28N2O9 | V = 2293.1 (3) Å3 |
Mr = 500.49 | Z = 4 |
Monoclinic, C2 | Mo Kα radiation |
a = 29.005 (2) Å | µ = 0.11 mm−1 |
b = 8.5430 (6) Å | T = 168 K |
c = 9.3081 (7) Å | 0.50 × 0.16 × 0.14 mm |
β = 96.163 (1)° | |
Data collection top
Bruker AXS CCD area-detector diffractometer | 2173 reflections with I > 2σ(I) |
15060 measured reflections | Rint = 0.039 |
2493 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.033 | 1 restraint |
wR(F2) = 0.084 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 0.20 e Å−3 |
2493 reflections | Δρmin = −0.18 e Å−3 |
329 parameters | |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.1925 (1) | 0.5001 (2) | 0.1924 (2) | 0.030 (1) | |
O2 | 0.2132 (1) | 0.7325 (2) | 0.1080 (2) | 0.033 (1) | |
O3 | 0.2199 (1) | 0.8567 (3) | 0.4023 (2) | 0.037 (1) | |
O4 | 0.2141 (1) | 1.0595 (3) | 0.2515 (3) | 0.054 (1) | |
O5 | 0.1349 (1) | 1.2190 (2) | 0.7433 (2) | 0.035 (1) | |
O6 | 0.1472 (1) | 0.9758 (2) | 0.8187 (2) | 0.032 (1) | |
O7 | 0.1051 (1) | 0.4502 (3) | 0.0505 (2) | 0.041 (1) | |
O8 | 0.0415 (1) | 0.3113 (3) | 0.1143 (2) | 0.046 (1) | |
O9 | 0.1320 (1) | 0.9547 (2) | 0.1180 (2) | 0.039 (1) | |
N1 | 0.1503 (1) | 0.7125 (3) | 0.2319 (2) | 0.024 (1) | |
N2 | 0.0793 (1) | 0.7490 (3) | 0.6923 (2) | 0.028 (1) | |
C1 | 0.2323 (1) | 0.4322 (4) | 0.1339 (3) | 0.035 (1) | |
C2 | 0.1876 (1) | 0.6517 (3) | 0.1697 (2) | 0.025 (1) | |
C3 | 0.1493 (1) | 0.8818 (3) | 0.2467 (2) | 0.027 (1) | |
C4 | 0.1984 (1) | 0.9437 (3) | 0.2959 (3) | 0.035 (1) | |
C5 | 0.2644 (1) | 0.9136 (5) | 0.4666 (4) | 0.056 (1) | |
C6 | 0.1156 (1) | 0.9272 (3) | 0.3580 (2) | 0.024 (1) | |
C7 | 0.1096 (1) | 0.8009 (3) | 0.4738 (2) | 0.022 (1) | |
C8 | 0.0894 (1) | 0.6634 (3) | 0.3871 (2) | 0.023 (1) | |
C9 | 0.1112 (1) | 0.6233 (3) | 0.2640 (2) | 0.023 (1) | |
C10 | 0.0917 (1) | 0.5058 (3) | 0.1777 (2) | 0.026 (1) | |
C11 | 0.0723 (1) | 0.3299 (4) | 0.0061 (3) | 0.050 (1) | |
C12 | 0.0533 (1) | 0.4262 (3) | 0.2140 (3) | 0.029 (1) | |
C13 | 0.0315 (1) | 0.4608 (3) | 0.3326 (3) | 0.029 (1) | |
C14 | 0.0506 (1) | 0.5817 (3) | 0.4190 (2) | 0.028 (1) | |
C15 | 0.1501 (1) | 0.7419 (3) | 0.5824 (2) | 0.024 (1) | |
C16 | 0.1245 (1) | 0.6718 (3) | 0.7036 (3) | 0.030 (1) | |
C17 | 0.0565 (1) | 0.7866 (4) | 0.8212 (3) | 0.038 (1) | |
C18 | 0.0328 (1) | 0.9398 (4) | 0.8112 (3) | 0.040 (1) | |
C19 | 0.0435 (1) | 1.0548 (4) | 0.7264 (3) | 0.035 (1) | |
C20 | 0.0828 (1) | 1.0328 (3) | 0.6324 (3) | 0.027 (1) | |
C21 | 0.0762 (1) | 0.8625 (3) | 0.5783 (2) | 0.024 (1) | |
C22 | 0.1258 (1) | 1.0671 (3) | 0.7389 (2) | 0.026 (1) | |
C23 | 0.1721 (1) | 1.2677 (3) | 0.8502 (3) | 0.038 (1) | |
C24 | 0.0823 (1) | 1.1384 (3) | 0.5005 (3) | 0.032 (1) | |
C25 | 0.1224 (1) | 1.0928 (3) | 0.4151 (3) | 0.031 (1) | |
H1o | 0.150 (1) | 0.944 (5) | 0.061 (4) | 0.06 (1)* | |
H1a | 0.2336 | 0.3198 | 0.1549 | 0.052* | |
H1b | 0.2607 | 0.4827 | 0.1783 | 0.052* | |
H1c | 0.2295 | 0.4484 | 0.0291 | 0.052* | |
H5a | 0.2768 | 0.8418 | 0.5432 | 0.084* | |
H5b | 0.2605 | 1.0178 | 0.5077 | 0.084* | |
H5c | 0.2859 | 0.9198 | 0.3925 | 0.084* | |
H6 | 0.0846 | 0.9307 | 0.2995 | 0.029* | |
H11a | 0.0546 | 0.3588 | −0.0870 | 0.060* | |
H11b | 0.0887 | 0.2302 | −0.0074 | 0.060* | |
H13 | 0.0047 | 0.4055 | 0.3547 | 0.035* | |
H14 | 0.0366 | 0.6092 | 0.5032 | 0.033* | |
H15a | 0.1687 | 0.6615 | 0.5382 | 0.029* | |
H15b | 0.1706 | 0.8291 | 0.6186 | 0.029* | |
H16a | 0.1207 | 0.5573 | 0.6908 | 0.036* | |
H16b | 0.1418 | 0.6923 | 0.7992 | 0.036* | |
H17a | 0.0800 | 0.7866 | 0.9066 | 0.046* | |
H17b | 0.0335 | 0.7039 | 0.8357 | 0.046* | |
H18 | 0.0083 | 0.9565 | 0.8696 | 0.048* | |
H19 | 0.0268 | 1.1506 | 0.7241 | 0.042* | |
H21 | 0.0442 | 0.8549 | 0.5270 | 0.029* | |
H23a | 0.1761 | 1.3814 | 0.8448 | 0.057* | |
H23b | 0.2010 | 1.2156 | 0.8313 | 0.057* | |
H23c | 0.1645 | 1.2391 | 0.9468 | 0.057* | |
H24a | 0.0856 | 1.2491 | 0.5314 | 0.038* | |
H24b | 0.0525 | 1.1270 | 0.4389 | 0.038* | |
H25a | 0.1239 | 1.1662 | 0.3335 | 0.037* | |
H25b | 0.1520 | 1.0998 | 0.4783 | 0.037* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.026 (1) | 0.030 (1) | 0.033 (1) | −0.001 (1) | 0.005 (1) | −0.005 (1) |
O2 | 0.029 (1) | 0.039 (1) | 0.033 (1) | −0.004 (1) | 0.012 (1) | −0.002 (1) |
O3 | 0.032 (1) | 0.051 (1) | 0.028 (1) | −0.018 (1) | 0.002 (1) | −0.006 (1) |
O4 | 0.065 (1) | 0.037 (1) | 0.065 (1) | −0.021 (1) | 0.025 (1) | −0.002 (1) |
O5 | 0.035 (1) | 0.031 (1) | 0.036 (1) | 0.002 (1) | −0.008 (1) | −0.008 (1) |
O6 | 0.034 (1) | 0.038 (1) | 0.024 (1) | 0.001 (1) | −0.005 (1) | −0.001 (1) |
O7 | 0.033 (1) | 0.057 (1) | 0.034 (1) | −0.012 (1) | 0.010 (1) | −0.026 (1) |
O8 | 0.040 (1) | 0.048 (1) | 0.051 (1) | −0.016 (1) | 0.012 (1) | −0.028 (1) |
O9 | 0.060 (1) | 0.039 (1) | 0.020 (1) | 0.006 (1) | 0.008 (1) | 0.006 (1) |
N1 | 0.026 (1) | 0.026 (1) | 0.022 (1) | −0.003 (1) | 0.005 (1) | −0.006 (1) |
N2 | 0.029 (1) | 0.037 (1) | 0.020 (1) | −0.001 (1) | 0.006 (1) | −0.002 (1) |
C1 | 0.024 (1) | 0.038 (2) | 0.043 (1) | 0.002 (1) | 0.004 (1) | −0.009 (1) |
C2 | 0.024 (1) | 0.034 (1) | 0.019 (1) | −0.004 (1) | 0.002 (1) | −0.004 (1) |
C3 | 0.037 (1) | 0.027 (1) | 0.018 (1) | −0.002 (1) | 0.004 (1) | −0.001 (1) |
C4 | 0.043 (2) | 0.031 (1) | 0.034 (1) | −0.010 (1) | 0.017 (1) | −0.010 (1) |
C5 | 0.035 (2) | 0.081 (3) | 0.053 (2) | −0.022 (2) | 0.003 (1) | −0.024 (2) |
C6 | 0.030 (1) | 0.024 (1) | 0.018 (1) | 0.002 (1) | 0.000 (1) | −0.001 (1) |
C7 | 0.022 (1) | 0.025 (1) | 0.018 (1) | 0.001 (1) | 0.003 (1) | −0.003 (1) |
C8 | 0.024 (1) | 0.024 (1) | 0.022 (1) | 0.004 (1) | 0.001 (1) | −0.001 (1) |
C9 | 0.023 (1) | 0.025 (1) | 0.020 (1) | 0.001 (1) | 0.001 (1) | −0.001 (1) |
C10 | 0.023 (1) | 0.033 (1) | 0.023 (1) | 0.004 (1) | 0.005 (1) | −0.005 (1) |
C11 | 0.045 (2) | 0.058 (2) | 0.048 (2) | −0.016 (2) | 0.012 (1) | −0.031 (2) |
C12 | 0.028 (1) | 0.027 (1) | 0.030 (1) | −0.002 (1) | −0.001 (1) | −0.009 (1) |
C13 | 0.024 (1) | 0.032 (1) | 0.034 (1) | −0.004 (1) | 0.007 (1) | −0.003 (1) |
C14 | 0.028 (1) | 0.032 (1) | 0.024 (1) | 0.000 (1) | 0.007 (1) | −0.004 (1) |
C15 | 0.025 (1) | 0.026 (1) | 0.021 (1) | 0.002 (1) | 0.001 (1) | −0.001 (1) |
C16 | 0.035 (1) | 0.032 (2) | 0.023 (1) | −0.001 (1) | 0.001 (1) | 0.001 (1) |
C17 | 0.040 (2) | 0.053 (2) | 0.024 (1) | −0.011 (1) | 0.010 (1) | −0.009 (1) |
C18 | 0.030 (1) | 0.061 (2) | 0.031 (1) | −0.002 (1) | 0.008 (1) | −0.018 (1) |
C19 | 0.026 (1) | 0.045 (2) | 0.033 (1) | 0.005 (1) | −0.002 (1) | −0.020 (1) |
C20 | 0.028 (1) | 0.032 (2) | 0.021 (1) | 0.006 (1) | −0.001 (1) | −0.007 (1) |
C21 | 0.022 (1) | 0.033 (1) | 0.019 (1) | 0.001 (1) | 0.002 (1) | −0.006 (1) |
C22 | 0.025 (1) | 0.033 (1) | 0.020 (1) | 0.004 (1) | 0.005 (1) | −0.006 (1) |
C23 | 0.031 (1) | 0.037 (2) | 0.043 (1) | −0.002 (1) | −0.008 (1) | −0.011 (1) |
C24 | 0.041 (1) | 0.027 (1) | 0.026 (1) | 0.010 (1) | −0.008 (1) | −0.006 (1) |
C25 | 0.045 (2) | 0.024 (1) | 0.023 (1) | 0.000 (1) | −0.001 (1) | −0.002 (1) |
Geometric parameters (Å, º) top
O1—C1 | 1.449 (3) | C18—C19 | 1.319 (4) |
O1—C2 | 1.317 (3) | C19—C20 | 1.520 (3) |
O2—C2 | 1.206 (3) | C20—C21 | 1.545 (3) |
O3—C4 | 1.337 (4) | C20—C22 | 1.536 (3) |
O3—C5 | 1.447 (3) | C20—C24 | 1.523 (4) |
O4—C4 | 1.182 (3) | C24—C25 | 1.526 (4) |
O5—C22 | 1.325 (4) | O9—H1o | 0.80 (4) |
O5—C23 | 1.448 (3) | C1—H1a | 0.98 |
O6—C22 | 1.202 (3) | C1—H1b | 0.98 |
O7—C10 | 1.370 (3) | C1—H1c | 0.98 |
O7—C11 | 1.432 (3) | C5—H5a | 0.98 |
O8—C11 | 1.425 (3) | C5—H5b | 0.98 |
O8—C12 | 1.369 (3) | C5—H5c | 0.98 |
O9—C3 | 1.396 (3) | C6—H6 | 1 |
N1—C2 | 1.381 (3) | C11—H11a | 0.99 |
N1—C3 | 1.453 (3) | C11—H11b | 0.99 |
N1—C9 | 1.423 (3) | C13—H13 | 0.95 |
N2—C16 | 1.459 (3) | C14—H14 | 0.95 |
N2—C17 | 1.467 (3) | C15—H15a | 0.99 |
N2—C21 | 1.433 (3) | C15—H15b | 0.99 |
C3—C4 | 1.541 (4) | C16—H16a | 0.99 |
C3—C6 | 1.549 (3) | C16—H16b | 0.99 |
C6—C7 | 1.548 (3) | C17—H17a | 0.99 |
C7—C8 | 1.508 (3) | C17—H17b | 0.99 |
C6—C25 | 1.517 (3) | C18—H18 | 0.95 |
C7—C15 | 1.549 (3) | C19—H19 | 0.95 |
C7—C21 | 1.537 (3) | C21—H21 | 1 |
C8—C9 | 1.410 (3) | C23—H23a | 0.98 |
C8—C14 | 1.382 (3) | C23—H23b | 0.98 |
C9—C10 | 1.370 (3) | C23—H23c | 0.98 |
C10—C12 | 1.377 (4) | C24—H24a | 0.99 |
C12—C13 | 1.362 (3) | C24—H24b | 0.99 |
C13—C14 | 1.388 (4) | C25—H25a | 0.99 |
C15—C16 | 1.537 (3) | C25—H25b | 0.99 |
C17—C18 | 1.476 (4) | | |
| | | |
C1—O1—C2 | 114.2 (2) | C6—C25—C24 | 110.1 (2) |
C4—O3—C5 | 116.3 (2) | C3—O9—H1o | 108 (3) |
C22—O5—C23 | 115.8 (2) | O1—C1—H1a | 109.5 |
C10—O7—C11 | 104.8 (2) | O1—C1—H1b | 109.5 |
C11—O8—C12 | 105.6 (2) | H1a—C1—H1b | 109.5 |
C2—N1—C3 | 116.0 (2) | O1—C1—H1C | 109.5 |
C2—N1—C9 | 124.2 (2) | H1a—C1—H1C | 109.5 |
C3—N1—C9 | 119.3 (2) | H1b—C1—H1C | 109.5 |
C16—N2—C17 | 121.3 (2) | O3—C5—H5a | 109.5 |
C16—N2—C21 | 110.1 (2) | O3—C5—H5b | 109.5 |
C17—N2—C21 | 117.4 (2) | H5a—C5—H5b | 109.5 |
O1—C2—O2 | 125.2 (2) | O3—C5—H5C | 109.5 |
O1—C2—N1 | 112.3 (2) | H5a—C5—H5C | 109.5 |
O2—C2—N1 | 122.4 (2) | H5b—C5—H5C | 109.5 |
O9—C3—N1 | 111.8 (2) | C25—C6—H6 | 103.8 |
O9—C3—C4 | 109.8 (2) | C7—C6—H6 | 103.8 |
O9—C3—C6 | 105.5 (2) | C3—C6—H6 | 103.8 |
N1—C3—C4 | 110.1 (2) | O8—C11—H11a | 109.9 |
N1—C3—C6 | 109.4 (2) | O7—C11—H11a | 109.9 |
C4—C3—C6 | 110.2 (2) | O8—C11—H11b | 109.9 |
O3—C4—O4 | 123.9 (3) | O7—C11—H11b | 109.9 |
O3—C4—C3 | 111.8 (2) | H11a—C11—H11b | 108.3 |
O4—C4—C3 | 124.1 (3) | C12—C13—H13 | 122.0 |
C3—C6—C25 | 113.6 (2) | C14—C13—H13 | 122.0 |
C7—C6—C25 | 115.2 (2) | C8—C14—H14 | 118.8 |
C3—C6—C7 | 114.7 (2) | C13—C14—H14 | 118.8 |
C6—C7—C8 | 103.7 (2) | C16—C15—H15a | 111.3 |
C6—C7—C21 | 109.1 (2) | C7—C15—H15a | 111.3 |
C8—C7—C15 | 108.6 (2) | C16—C15—H15b | 111.3 |
C8—C7—C21 | 111.7 (2) | C7—C15—H15b | 111.3 |
C6—C7—C15 | 123.2 (2) | H15a—C15—H15b | 109.2 |
C15—C7—C21 | 100.6 (2) | N2—C16—H16a | 110.6 |
C7—C8—C9 | 116.2 (2) | C15—C16—H16a | 110.6 |
C7—C8—C14 | 123.8 (2) | N2—C16—H16b | 110.6 |
C9—C8—C14 | 119.9 (2) | C15—C16—H16b | 110.6 |
C8—C9—C10 | 117.4 (2) | H16a—C16—H16b | 108.7 |
C8—C9—N1 | 118.6 (2) | N2—C17—H17a | 109.0 |
C10—C9—N1 | 123.9 (2) | C18—C17—H17a | 109.0 |
O7—C10—C9 | 128.5 (2) | N2—C17—H17b | 109.0 |
O7—C10—C12 | 110.7 (2) | C18—C17—H17b | 109.0 |
C9—C10—C12 | 120.8 (2) | H17a—C17—H17b | 107.8 |
O7—C11—O8 | 108.9 (2) | C19—C18—H18 | 118.0 |
C13—C12—O8 | 126.9 (2) | C17—C18—H18 | 118.0 |
C10—C12—C13 | 123.4 (2) | C18—C19—H19 | 120.3 |
O8—C12—C10 | 109.7 (2) | C20—C19—H19 | 120.3 |
C12—C13—C14 | 116.0 (2) | N2—C21—H21 | 107.0 |
C8—C14—C13 | 122.4 (2) | C7—C21—H21 | 107.0 |
C7—C15—C16 | 102.4 (2) | C20—C21—H21 | 107.0 |
N2—C16—C15 | 105.7 (2) | O5—C23—H23a | 109.5 |
N2—C17—C18 | 113.0 (2) | O5—C23—H23b | 109.5 |
C17—C18—C19 | 124.1 (2) | H23a—C23—H23b | 109.5 |
C18—C19—C20 | 119.5 (3) | O5—C23—H23C | 109.5 |
C19—C20—C22 | 102.2 (2) | H23a—C23—H23C | 109.5 |
C19—C20—C24 | 116.7 (2) | H23b—C23—H23C | 109.5 |
C19—C20—C21 | 103.3 (2) | C20—C24—H24a | 109.9 |
C21—C20—C22 | 117.0 (2) | C25—C24—H24a | 109.9 |
C21—C20—C24 | 107.8 (2) | C20—C24—H24b | 109.9 |
C22—C20—C24 | 110.1 (2) | C25—C24—H24b | 109.9 |
N2—C21—C7 | 104.1 (2) | H24a—C24—H24b | 108.3 |
N2—C21—C20 | 113.6 (2) | C6—C25—H25a | 109.6 |
C7—C21—C20 | 117.7 (2) | C24—C25—H25a | 109.6 |
O5—C22—O6 | 121.9 (2) | C6—C25—H25b | 109.6 |
O5—C22—C20 | 110.7 (2) | C24—C25—H25b | 109.6 |
O6—C22—C20 | 127.2 (2) | H25a—C25—H25b | 108.2 |
C20—C24—C25 | 109.1 (2) | | |
| | | |
C1—O1—C2—O2 | −0.8 (3) | C11—O8—C12—C13 | 175.6 (3) |
C1—O1—C2—N1 | −177.7 (2) | C11—O8—C12—C10 | −4.4 (3) |
C9—N1—C2—O2 | 159.0 (2) | O7—C10—C12—C13 | −177.6 (2) |
C3—N1—C2—O2 | −12.9 (3) | C9—C10—C12—C13 | 2.3 (4) |
C9—N1—C2—O1 | −24.1 (3) | O7—C10—C12—O8 | 2.5 (3) |
C3—N1—C2—O1 | 164.1 (2) | C9—C10—C12—O8 | −177.7 (2) |
C2—N1—C3—O9 | 81.2 (3) | O8—C12—C13—C14 | 178.9 (2) |
C9—N1—C3—O9 | −91.1 (2) | C10—C12—C13—C14 | −1.0 (4) |
C2—N1—C3—C4 | −41.1 (3) | C9—C8—C14—C13 | −0.9 (4) |
C9—N1—C3—C4 | 146.6 (2) | C7—C8—C14—C13 | 176.5 (2) |
C2—N1—C3—C6 | −162.3 (2) | C12—C13—C14—C8 | 0.4 (4) |
C9—N1—C3—C6 | 25.4 (3) | C8—C7—C15—C16 | −79.5 (2) |
C5—O3—C4—O4 | 1.6 (4) | C21—C7—C15—C16 | 37.9 (2) |
C5—O3—C4—C3 | −174.0 (2) | C6—C7—C15—C16 | 159.3 (2) |
O9—C3—C4—O4 | 16.5 (4) | C21—N2—C16—C15 | −1.9 (3) |
N1—C3—C4—O4 | 140.0 (3) | C17—N2—C16—C15 | −144.6 (2) |
C6—C3—C4—O4 | −99.3 (3) | C7—C15—C16—N2 | −23.3 (2) |
O9—C3—C4—O3 | −168.0 (2) | C21—N2—C17—C18 | 0.6 (3) |
N1—C3—C4—O3 | −44.5 (3) | C16—N2—C17—C18 | 140.8 (2) |
C6—C3—C4—O3 | 76.3 (3) | N2—C17—C18—C19 | −23.1 (4) |
O9—C3—C6—C25 | −76.8 (2) | C17—C18—C19—C20 | −0.5 (4) |
N1—C3—C6—C25 | 162.8 (2) | C18—C19—C20—C24 | 158.1 (2) |
C4—C3—C6—C25 | 41.6 (3) | C18—C19—C20—C22 | −81.8 (3) |
O9—C3—C6—C7 | 147.7 (2) | C18—C19—C20—C21 | 40.0 (3) |
N1—C3—C6—C7 | 27.3 (3) | C16—N2—C21—C7 | 26.7 (2) |
C4—C3—C6—C7 | −93.9 (3) | C17—N2—C21—C7 | 171.1 (2) |
C25—C6—C7—C8 | 163.3 (2) | C16—N2—C21—C20 | −102.5 (2) |
C3—C6—C7—C8 | −61.9 (2) | C17—N2—C21—C20 | 41.9 (3) |
C25—C6—C7—C21 | 44.1 (3) | C8—C7—C21—N2 | 75.2 (2) |
C3—C6—C7—C21 | 178.9 (2) | C6—C7—C21—N2 | −170.7 (2) |
C25—C6—C7—C15 | −73.2 (3) | C15—C7—C21—N2 | −39.9 (2) |
C3—C6—C7—C15 | 61.6 (3) | C8—C7—C21—C20 | −158.2 (2) |
C21—C7—C8—C14 | −13.1 (3) | C6—C7—C21—C20 | −44.1 (2) |
C6—C7—C8—C14 | −130.6 (2) | C15—C7—C21—C20 | 86.7 (2) |
C15—C7—C8—C14 | 96.9 (3) | C19—C20—C21—N2 | −60.2 (2) |
C21—C7—C8—C9 | 164.3 (2) | C24—C20—C21—N2 | 175.7 (2) |
C6—C7—C8—C9 | 46.9 (2) | C22—C20—C21—N2 | 51.1 (3) |
C15—C7—C8—C9 | −85.6 (2) | C19—C20—C21—C7 | 177.9 (2) |
C14—C8—C9—C10 | 2.0 (3) | C24—C20—C21—C7 | 53.8 (3) |
C7—C8—C9—C10 | −175.6 (2) | C22—C20—C21—C7 | −70.7 (3) |
C14—C8—C9—N1 | 178.3 (2) | C23—O5—C22—O6 | −0.1 (3) |
C7—C8—C9—N1 | 0.7 (3) | C23—O5—C22—C20 | 174.3 (2) |
C2—N1—C9—C10 | −37.8 (3) | C19—C20—C22—O6 | 87.4 (3) |
C3—N1—C9—C10 | 133.8 (2) | C24—C20—C22—O6 | −148.0 (2) |
C2—N1—C9—C8 | 146.2 (2) | C21—C20—C22—O6 | −24.6 (3) |
C3—N1—C9—C8 | −42.2 (3) | C19—C20—C22—O5 | −86.6 (2) |
C11—O7—C10—C9 | −179.2 (3) | C24—C20—C22—O5 | 38.0 (3) |
C11—O7—C10—C12 | 0.6 (3) | C21—C20—C22—O5 | 161.4 (2) |
C8—C9—C10—O7 | 177.2 (2) | C19—C20—C24—C25 | −176.6 (2) |
N1—C9—C10—O7 | 1.1 (4) | C22—C20—C24—C25 | 67.6 (3) |
C8—C9—C10—C12 | −2.6 (3) | C21—C20—C24—C25 | −61.0 (2) |
N1—C9—C10—C12 | −178.7 (2) | C7—C6—C25—C24 | −55.6 (3) |
C12—O8—C11—O7 | 4.8 (3) | C3—C6—C25—C24 | 169.1 (2) |
C10—O7—C11—O8 | −3.4 (3) | C20—C24—C25—C6 | 63.7 (2) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O9—H1o···O6i | 0.80 (4) | 2.26 (4) | 2.873 (2) | 133 (3) |
Symmetry code: (i) x, y, z−1. |
Experimental details
Crystal data |
Chemical formula | C25H28N2O9 |
Mr | 500.49 |
Crystal system, space group | Monoclinic, C2 |
Temperature (K) | 168 |
a, b, c (Å) | 29.005 (2), 8.5430 (6), 9.3081 (7) |
β (°) | 96.163 (1) |
V (Å3) | 2293.1 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.50 × 0.16 × 0.14 |
|
Data collection |
Diffractometer | Bruker AXS CCD area-detector diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 15060, 2493, 2173 |
Rint | 0.039 |
(sin θ/λ)max (Å−1) | 0.628 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.033, 0.084, 1.02 |
No. of reflections | 2493 |
No. of parameters | 329 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.20, −0.18 |
Selected geometric parameters (Å, º) topO1—C1 | 1.449 (3) | C3—C6 | 1.549 (3) |
O1—C2 | 1.317 (3) | C6—C7 | 1.548 (3) |
O2—C2 | 1.206 (3) | C7—C8 | 1.508 (3) |
O3—C4 | 1.337 (4) | C6—C25 | 1.517 (3) |
O3—C5 | 1.447 (3) | C7—C15 | 1.549 (3) |
O4—C4 | 1.182 (3) | C7—C21 | 1.537 (3) |
O5—C22 | 1.325 (4) | C8—C9 | 1.410 (3) |
O5—C23 | 1.448 (3) | C8—C14 | 1.382 (3) |
O6—C22 | 1.202 (3) | C9—C10 | 1.370 (3) |
O7—C10 | 1.370 (3) | C10—C12 | 1.377 (4) |
O7—C11 | 1.432 (3) | C12—C13 | 1.362 (3) |
O8—C11 | 1.425 (3) | C13—C14 | 1.388 (4) |
O8—C12 | 1.369 (3) | C15—C16 | 1.537 (3) |
O9—C3 | 1.396 (3) | C17—C18 | 1.476 (4) |
N1—C2 | 1.381 (3) | C18—C19 | 1.319 (4) |
N1—C3 | 1.453 (3) | C19—C20 | 1.520 (3) |
N1—C9 | 1.423 (3) | C20—C21 | 1.545 (3) |
N2—C16 | 1.459 (3) | C20—C22 | 1.536 (3) |
N2—C17 | 1.467 (3) | C20—C24 | 1.523 (4) |
N2—C21 | 1.433 (3) | C24—C25 | 1.526 (4) |
C3—C4 | 1.541 (4) | | |
| | | |
C1—O1—C2 | 114.2 (2) | C7—C8—C14 | 123.8 (2) |
C4—O3—C5 | 116.3 (2) | C9—C8—C14 | 119.9 (2) |
C22—O5—C23 | 115.8 (2) | C8—C9—C10 | 117.4 (2) |
C10—O7—C11 | 104.8 (2) | C8—C9—N1 | 118.6 (2) |
C11—O8—C12 | 105.6 (2) | C10—C9—N1 | 123.9 (2) |
C2—N1—C3 | 116.0 (2) | O7—C10—C9 | 128.5 (2) |
C2—N1—C9 | 124.2 (2) | O7—C10—C12 | 110.7 (2) |
C3—N1—C9 | 119.3 (2) | C9—C10—C12 | 120.8 (2) |
C16—N2—C17 | 121.3 (2) | O7—C11—O8 | 108.9 (2) |
C16—N2—C21 | 110.1 (2) | C13—C12—O8 | 126.9 (2) |
C17—N2—C21 | 117.4 (2) | C10—C12—C13 | 123.4 (2) |
O1—C2—O2 | 125.2 (2) | O8—C12—C10 | 109.7 (2) |
O1—C2—N1 | 112.3 (2) | C12—C13—C14 | 116.0 (2) |
O2—C2—N1 | 122.4 (2) | C8—C14—C13 | 122.4 (2) |
O9—C3—N1 | 111.8 (2) | C7—C15—C16 | 102.4 (2) |
O9—C3—C4 | 109.8 (2) | N2—C16—C15 | 105.7 (2) |
O9—C3—C6 | 105.5 (2) | N2—C17—C18 | 113.0 (2) |
N1—C3—C4 | 110.1 (2) | C17—C18—C19 | 124.1 (2) |
N1—C3—C6 | 109.4 (2) | C18—C19—C20 | 119.5 (3) |
C4—C3—C6 | 110.2 (2) | C19—C20—C22 | 102.2 (2) |
O3—C4—O4 | 123.9 (3) | C19—C20—C24 | 116.7 (2) |
O3—C4—C3 | 111.8 (2) | C19—C20—C21 | 103.3 (2) |
O4—C4—C3 | 124.1 (3) | C21—C20—C22 | 117.0 (2) |
C3—C6—C25 | 113.6 (2) | C21—C20—C24 | 107.8 (2) |
C7—C6—C25 | 115.2 (2) | C22—C20—C24 | 110.1 (2) |
C3—C6—C7 | 114.7 (2) | N2—C21—C7 | 104.1 (2) |
C6—C7—C8 | 103.7 (2) | N2—C21—C20 | 113.6 (2) |
C6—C7—C21 | 109.1 (2) | C7—C21—C20 | 117.7 (2) |
C8—C7—C15 | 108.6 (2) | O5—C22—O6 | 121.9 (2) |
C8—C7—C21 | 111.7 (2) | O5—C22—C20 | 110.7 (2) |
C6—C7—C15 | 123.2 (2) | O6—C22—C20 | 127.2 (2) |
C15—C7—C21 | 100.6 (2) | C20—C24—C25 | 109.1 (2) |
C7—C8—C9 | 116.2 (2) | C6—C25—C24 | 110.1 (2) |
Mersinines A and B, and mersiloscine are pentacyclic quinolinic alkaloids that are found within the genus Kopsia. These alkaloids contain a meloscine skeleton whose five-membered C ring has an additional C atom. The title alkaloid, mersinine A, (I), isolated from the leaves of Kopsia fruticosa (Ker.) A. DC., possesses a tetrahydroquinoline chromophore and its structure has been determined by solution NMR spectroscopy (Kam et al., 2001). The present study reports the solid-state structure, which confirms the NMR results (Fig. 1). The hydroxyl group forms a hydrogen bond to the carbonyl O atom of an adjacent carboxyl unit [O9···O6i 2.873 (2) Å and O9—H9o···O6i 133 (3)°; symmetry code: (i) x, y, z − 1], thus giving rise to linear chains running along the c axis of the crystal.