Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270101019357/tr1008sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270101019357/tr1008Isup2.hkl | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270101019357/tr1008IIsup3.hkl |
CCDC references: 181992; 181993
To prepare compound (I), HBF4 (400 µl, 2.7 mmol) was added to a dms solution of Pd(OAc)2 (OAc is acetate; 195 mg, 0.87 mmol). Yellow crystals precipitated immediately and the solution was stirred for 20 min. Recrystallization from dichloromethane gave yellow prismatic crystals of (I) suitable for X-ray diffraction. Compound (II) was prepared by adding an excess of 1,4-oxathiane to a solution of Pd(OAc)2 (100 mg, 0.45 mmol) in dichloromethane. The solution was stirred at room temperature for 5 min before HBF4 (150 µl, 1.0 mmol) was added. Pale yellow crystals of (II) precipitated immediately and the crystals were recrystallized from nitromethane.
H atoms were constrained to parent sites, with C—H = ? Please provide range for C—H and refined using a riding model, with Uiso(H) = 1.5Ueq(C) for CH3 and 1.2Ueq(C) for CH2. Are these the correct restraints? Please also provide details of C—H distances in CIF-format for addition to the archived CIF. The structure of (II) has one significant residual density peak of 2.561 e Å-3 and one hole of -2.607 e Å-3 in the final difference Fourier map, and these lie 1.07 and 0.87 Å from Pd, respectively. No high residual density peaks where found in the final difference Fourier map for (I).
For both compounds, data collection: SMART (Siemens, 1995); cell refinement: SAINT (Siemens, 1995); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997a); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997a); molecular graphics: DIAMOND (Brandenburg, 2000); software used to prepare material for publication: SHELXTL (Sheldrick, 1997b).
[Pd(C2H6S)4](BF4)2 | F(000) = 528 |
Mr = 528.53 | Dx = 1.736 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
a = 8.4505 (17) Å | Cell parameters from 4803 reflections |
b = 9.955 (2) Å | θ = 3–28° |
c = 12.172 (2) Å | µ = 1.39 mm−1 |
β = 98.99 (3)° | T = 293 K |
V = 1011.4 (3) Å3 | Prism, pale yellow |
Z = 2 | 0.3 × 0.1 × 0.1 mm |
Bruker SMART CCD area-detector diffractometer | 3087 independent reflections |
Radiation source: rotating anode | 2408 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.028 |
Detector resolution: 512 pixels mm-1 | θmax = 31.6°, θmin = 2.7° |
ω scans | h = −10→12 |
Absorption correction: empirical (using intensity measurements) (SADABS; Sheldrick, 1996) | k = −14→12 |
Tmin = 0.595, Tmax = 0.831 | l = −16→17 |
8129 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.127 | H-atom parameters constrained |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0557P)2 + 1.3665P] where P = (Fo2 + 2Fc2)/3 |
3087 reflections | (Δ/σ)max < 0.001 |
125 parameters | Δρmax = 0.77 e Å−3 |
0 restraints | Δρmin = −0.54 e Å−3 |
[Pd(C2H6S)4](BF4)2 | V = 1011.4 (3) Å3 |
Mr = 528.53 | Z = 2 |
Monoclinic, P21/n | Mo Kα radiation |
a = 8.4505 (17) Å | µ = 1.39 mm−1 |
b = 9.955 (2) Å | T = 293 K |
c = 12.172 (2) Å | 0.3 × 0.1 × 0.1 mm |
β = 98.99 (3)° |
Bruker SMART CCD area-detector diffractometer | 3087 independent reflections |
Absorption correction: empirical (using intensity measurements) (SADABS; Sheldrick, 1996) | 2408 reflections with I > 2σ(I) |
Tmin = 0.595, Tmax = 0.831 | Rint = 0.028 |
8129 measured reflections |
R[F2 > 2σ(F2)] = 0.044 | 0 restraints |
wR(F2) = 0.127 | H-atom parameters constrained |
S = 1.09 | Δρmax = 0.77 e Å−3 |
3087 reflections | Δρmin = −0.54 e Å−3 |
125 parameters |
Experimental. The intensity data sets were collected at 293 K with a Bruker SMART CCD system using ω scans, -0.3° and 20 sec per frame for both data sets (Bruker, 1995). The detector distance was set to 4.0 cm. A rotating anode with Mo Kα radiation was used. Data are complete to 99.5% up to θ = 27.5° for (I) and to 98.8% up to θ = 27.9° for (II). Scattering factors, dispersion corrections and absorption coefficients were taken from International Tables for Crystallography, Vol. C. (1992), Tables 6.1.1.4, 4.2.6.8 and 4.2.4.2, respectively. All reflections were merged and integrated using SAINT (Bruker, 1995). Both structures were solved by direct methods and refined by full matrix least-square calculations on F2 using SHELXTL 5.1 (Sheldrick, 1998). Non-H atoms were refined with anisotropic displacement parameters. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. # Selected torsion angles for compound (I) [Pd(dms)4](BF4)2 -40.22 (0.30) S2_a - Pd - S1_a - C1 68.21 (0.27) S2_a - Pd - S1_a - C2 - 144.33 (0.28) S1_a - Pd - S2_a - C4 108.81 (0.26) S1_a - Pd - S2_a - C3 - 111.90 (0.62) S2'_b - Pd - S1'_b - C1 136.80 (0.53) S2'_b - Pd - S1'_b - C2 - 54.95 (0.67) S1'_b - Pd - S2'_b - C4 56.22 (0.54) S1'_b - Pd - S2'_b - C3 |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Pd | 0.0000 | 0.0000 | 0.0000 | 0.03938 (13) | |
S1 | −0.10409 (17) | −0.05826 (13) | −0.18310 (9) | 0.0606 (3) | 0.875 (2) |
S2 | −0.17095 (16) | 0.18541 (13) | −0.01339 (10) | 0.0615 (3) | 0.875 (2) |
S1' | −0.1637 (12) | 0.0755 (10) | −0.1614 (7) | 0.062 (2) | 0.125 (2) |
S2' | −0.0984 (12) | 0.1702 (9) | 0.1014 (8) | 0.065 (3) | 0.125 (2) |
C1 | −0.3132 (8) | −0.0334 (8) | −0.2100 (6) | 0.109 (2) | |
H1A | −0.3536 | −0.0612 | −0.2846 | 0.164* | 0.875 (2) |
H1B | −0.3367 | 0.0600 | −0.2013 | 0.164* | 0.875 (2) |
H1C | −0.3632 | −0.0856 | −0.1586 | 0.164* | 0.875 (2) |
H1A' | −0.3744 | −0.0008 | −0.2752 | 0.164* | 0.125 (2) |
H1B' | −0.3790 | −0.0512 | −0.1537 | 0.164* | 0.125 (2) |
H1C' | −0.2660 | −0.1213 | −0.2269 | 0.164* | 0.125 (2) |
C2 | −0.0379 (9) | 0.0703 (7) | −0.2685 (4) | 0.103 (2) | |
H2A | −0.0785 | 0.0522 | −0.3452 | 0.155* | 0.875 (2) |
H2B | 0.0771 | 0.0716 | −0.2579 | 0.155* | 0.875 (2) |
H2C | −0.0767 | 0.1559 | −0.2480 | 0.155* | 0.875 (2) |
H2A' | −0.0997 | 0.1007 | −0.3386 | 0.155* | 0.125 (2) |
H2B' | −0.0038 | −0.0197 | −0.2776 | 0.155* | 0.125 (2) |
H2C' | 0.0514 | 0.1282 | −0.2491 | 0.155* | 0.125 (2) |
C3 | −0.3180 (7) | 0.1415 (8) | 0.0744 (7) | 0.108 (2) | |
H3A | −0.3892 | 0.2159 | 0.0781 | 0.163* | 0.875 (2) |
H3B | −0.2643 | 0.1204 | 0.1478 | 0.163* | 0.875 (2) |
H3C | −0.3783 | 0.0648 | 0.0437 | 0.163* | 0.875 (2) |
H3A' | −0.3632 | 0.2130 | 0.1150 | 0.163* | 0.125 (2) |
H3B' | −0.3331 | 0.0589 | 0.1016 | 0.163* | 0.125 (2) |
H3C' | −0.3472 | 0.1540 | −0.0021 | 0.163* | 0.125 (2) |
C4 | −0.0859 (9) | 0.3274 (5) | 0.0593 (6) | 0.105 (2) | |
H4A | −0.1624 | 0.3995 | 0.0513 | 0.157* | 0.875 (2) |
H4B | 0.0078 | 0.3547 | 0.0296 | 0.157* | 0.875 (2) |
H4C | −0.0568 | 0.3057 | 0.1367 | 0.157* | 0.875 (2) |
H4A' | −0.1323 | 0.3842 | 0.1087 | 0.157* | 0.125 (2) |
H4B' | −0.1466 | 0.3343 | −0.0146 | 0.157* | 0.125 (2) |
H4C' | 0.0225 | 0.3485 | 0.0586 | 0.157* | 0.125 (2) |
B | 0.2931 (9) | 0.2880 (8) | −0.0900 (5) | 0.0797 (17) | |
F1 | 0.1615 (8) | 0.3416 (6) | −0.1449 (4) | 0.177 (3) | |
F2 | 0.2723 (7) | 0.2139 (7) | −0.0047 (5) | 0.180 (3) | |
F3 | 0.3694 (9) | 0.2169 (8) | −0.1559 (5) | 0.208 (3) | |
F4 | 0.3905 (11) | 0.3804 (8) | −0.0492 (7) | 0.261 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Pd | 0.0438 (2) | 0.03826 (19) | 0.03665 (18) | 0.00101 (14) | 0.00817 (13) | −0.00176 (13) |
S1 | 0.0836 (9) | 0.0531 (7) | 0.0418 (5) | 0.0047 (6) | 0.0000 (5) | −0.0062 (5) |
S2 | 0.0708 (8) | 0.0587 (7) | 0.0542 (6) | 0.0221 (6) | 0.0069 (5) | −0.0032 (5) |
S1' | 0.075 (6) | 0.060 (5) | 0.050 (4) | 0.009 (4) | 0.002 (4) | 0.005 (4) |
S2' | 0.073 (5) | 0.058 (5) | 0.066 (5) | 0.012 (4) | 0.016 (4) | −0.018 (4) |
C1 | 0.086 (4) | 0.140 (6) | 0.090 (4) | −0.021 (4) | −0.025 (4) | −0.013 (4) |
C2 | 0.161 (7) | 0.103 (5) | 0.050 (3) | −0.005 (5) | 0.030 (3) | 0.014 (3) |
C3 | 0.069 (3) | 0.130 (6) | 0.134 (6) | 0.016 (4) | 0.039 (4) | −0.021 (5) |
C4 | 0.143 (6) | 0.046 (3) | 0.131 (6) | 0.007 (3) | 0.040 (5) | −0.010 (3) |
B | 0.094 (4) | 0.088 (4) | 0.057 (3) | −0.023 (4) | 0.011 (3) | 0.007 (3) |
F1 | 0.200 (6) | 0.196 (6) | 0.119 (4) | 0.093 (5) | −0.026 (4) | −0.005 (4) |
F2 | 0.129 (4) | 0.234 (7) | 0.186 (5) | −0.002 (4) | 0.055 (4) | 0.118 (5) |
F3 | 0.229 (7) | 0.269 (9) | 0.130 (4) | 0.110 (6) | 0.039 (4) | −0.005 (5) |
F4 | 0.351 (11) | 0.197 (7) | 0.207 (7) | −0.163 (8) | −0.038 (7) | 0.008 (6) |
Pd—S1 | 2.3375 (12) | S2—C3 | 1.814 (7) |
Pd—S1i | 2.3375 (12) | S2—C4 | 1.761 (6) |
Pd—S2i | 2.3338 (12) | S1'—C1 | 1.700 (12) |
Pd—S2 | 2.3338 (12) | S1'—C2 | 1.807 (12) |
Pd—S1'i | 2.343 (8) | S2'—C3 | 1.855 (12) |
Pd—S1' | 2.343 (8) | S2'—C4 | 1.655 (11) |
Pd—S2' | 2.325 (8) | B—F4 | 1.281 (8) |
Pd—S2'i | 2.325 (8) | B—F2 | 1.308 (7) |
S1—C1 | 1.764 (7) | B—F3 | 1.313 (9) |
S1—C2 | 1.792 (6) | B—F1 | 1.317 (8) |
S1—Pd—S1i | 180.00 (2) | S1—Pd—S1' | 36.4 (2) |
S1—Pd—S1'i | 143.6 (2) | S1i—Pd—S1' | 143.6 (2) |
S1i—Pd—S1'i | 36.4 (2) | S1'i—Pd—S1' | 180.0 (4) |
S1i—Pd—S2 | 90.40 (5) | Pd—S1—C1 | 111.0 (3) |
S1—Pd—S2 | 89.60 (5) | Pd—S1—C2 | 105.7 (2) |
S1'—Pd—S2'i | 90.1 (3) | Pd—S2—C3 | 104.0 (2) |
S1'i—Pd—S2'i | 89.9 (3) | Pd—S2—C4 | 113.6 (2) |
S2'—Pd—S2'i | 180.0 (4) | Pd—S1'—C1 | 113.3 (5) |
S2'—Pd—S2i | 143.9 (2) | Pd—S1'—C2 | 105.0 (5) |
S2'i—Pd—S2i | 36.1 (2) | Pd—S2'—C3 | 103.0 (5) |
S2'—Pd—S2 | 36.1 (2) | Pd—S2'—C4 | 118.6 (6) |
S2'i—Pd—S2 | 143.9 (2) | C1—S1—C2 | 100.8 (4) |
S2i—Pd—S2 | 180.00 (5) | C3—S2—C4 | 99.3 (4) |
S2'—Pd—S1 | 125.1 (2) | C1—S1'—C2 | 102.7 (6) |
S2'i—Pd—S1 | 54.9 (2) | C3—S2'—C4 | 101.6 (6) |
S2'—Pd—S1i | 54.9 (2) | S1'—C1—S1 | 49.9 (4) |
S2'i—Pd—S1i | 125.1 (2) | S1—C2—S1' | 48.0 (3) |
S2i—Pd—S1i | 89.60 (5) | S2—C3—S2' | 46.3 (3) |
S2—Pd—S1i | 90.40 (5) | S2'—C4—S2 | 49.9 (4) |
S2i—Pd—S1'i | 53.8 (2) | F4—B—F2 | 104.8 (7) |
S2—Pd—S1'i | 126.2 (2) | F4—B—F3 | 106.1 (8) |
S2'—Pd—S1' | 89.9 (3) | F2—B—F3 | 108.7 (7) |
S2'i—Pd—S1' | 90.1 (3) | F4—B—F1 | 110.3 (8) |
S2i—Pd—S1' | 126.2 (2) | F2—B—F1 | 115.1 (7) |
S2—Pd—S1' | 53.8 (2) | F3—B—F1 | 111.4 (6) |
Symmetry code: (i) −x, −y, −z. |
[Pd(C4H8OS)4](BF4)2 | Z = 1 |
Mr = 696.68 | F(000) = 352 |
Triclinic, P1 | Dx = 1.722 Mg m−3 |
a = 8.8804 (18) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 9.5397 (19) Å | Cell parameters from 2469 reflections |
c = 9.6999 (19) Å | θ = 4–26° |
α = 94.11 (3)° | µ = 1.08 mm−1 |
β = 114.12 (3)° | T = 293 K |
γ = 111.79 (3)° | Prism, yellow |
V = 671.8 (2) Å3 | 0.20 × 0.14 × 0.12 mm |
Bruker SMART CCD area-detector diffractometer | 3185 independent reflections |
Radiation source: rotating anode | 2080 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.050 |
Detector resolution: 512 pixels mm-1 | θmax = 27.9°, θmin = 2.4° |
ω scans | h = −11→11 |
Absorption correction: empirical (using intensity measurements) (SADABS; Sheldrick, 1996) | k = −11→12 |
Tmin = 0.813, Tmax = 0.882 | l = −12→10 |
4856 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.080 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.203 | H-atom parameters constrained |
S = 0.96 | w = 1/[σ2(Fo2) + (0.1175P)2] where P = (Fo2 + 2Fc2)/3 |
3185 reflections | (Δ/σ)max < 0.001 |
188 parameters | Δρmax = 2.56 e Å−3 |
0 restraints | Δρmin = −2.61 e Å−3 |
[Pd(C4H8OS)4](BF4)2 | γ = 111.79 (3)° |
Mr = 696.68 | V = 671.8 (2) Å3 |
Triclinic, P1 | Z = 1 |
a = 8.8804 (18) Å | Mo Kα radiation |
b = 9.5397 (19) Å | µ = 1.08 mm−1 |
c = 9.6999 (19) Å | T = 293 K |
α = 94.11 (3)° | 0.20 × 0.14 × 0.12 mm |
β = 114.12 (3)° |
Bruker SMART CCD area-detector diffractometer | 3185 independent reflections |
Absorption correction: empirical (using intensity measurements) (SADABS; Sheldrick, 1996) | 2080 reflections with I > 2σ(I) |
Tmin = 0.813, Tmax = 0.882 | Rint = 0.050 |
4856 measured reflections |
R[F2 > 2σ(F2)] = 0.080 | 0 restraints |
wR(F2) = 0.203 | H-atom parameters constrained |
S = 0.96 | Δρmax = 2.56 e Å−3 |
3185 reflections | Δρmin = −2.61 e Å−3 |
188 parameters |
Experimental. The intensity data sets were collected at 293 K with a Bruker SMART CCD system using ω scans, -0.3° and 20 sec per frame for both data sets (Bruker, 1995). The detector distance was set to 4.0 cm. A rotating anode with Mo Kα radiation was used. Data are complete to 99.5% up to θ = 27.5° for (I) and to 98.8% up to θ = 27.9° for (II). Scattering factors, dispersion corrections and absorption coefficients were taken from International Tables for Crystallography, Vol. C. (1992), Tables 6.1.1.4, 4.2.6.8 and 4.2.4.2, respectively. All reflections were merged and integrated using SAINT (Bruker, 1995). Both structures were solved by direct methods and refined by full matrix least-square calculations on F2 using SHELXTL 5.1 (Sheldrick, 1998). Non-H atoms were refined with anisotropic displacement parameters. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. # Selected torsion angles for compound [Pd(tx)4](BF4)2, (II) -137.21 (0.34) S2 - Pd - S1 - C1 116.45 (1/4) S2 - Pd - S1 - C3 48.35 (0.32) S1 - Pd - S2 - C7 - 58.25 (0.28) S1 - Pd - S2 - C5 - 52.53 (0.73) C3 - S1 - C1 - C2 - 165.75 (0.59) Pd - S1 - C1 - C2 - 64.91 (0.98) C4 - O1 - C2 - C1 61.73 (0.99) S1 - C1 - C2 - O1 53.10 (0.56) C1 - S1 - C3 - C4 168.68 (0.43) Pd - S1 - C3 - C4 66.00 (0.89) C2 - O1 - C4 - C3 - 63.18 (0.78) S1 - C3 - C4 - O1 51.76 (0.65) C7 - S2 - C5 - C6 167.53 (1/2) Pd - S2 - C5 - C6 68.22 (0.91) C8 - O2 - C6 - C5 - 62.11 (0.83) S2 - C5 - C6 - O2 - 51.24 (0.68) C5 - S2 - C7 - C8 - 162.61 (0.53) Pd - S2 - C7 - C8 - 68.21 (0.94) C6 - O2 - C8 - C7 |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Pd | 0.0000 | 0.0000 | 0.0000 | 0.0389 (3) | |
S1 | 0.1223 (3) | −0.12129 (19) | 0.18864 (18) | 0.0434 (4) | |
S2 | −0.0004 (3) | 0.1677 (2) | 0.18654 (18) | 0.0453 (5) | |
O1 | 0.1913 (9) | −0.4185 (7) | 0.2135 (7) | 0.0646 (15) | |
O2 | 0.0678 (9) | 0.2047 (7) | 0.5288 (6) | 0.0673 (17) | |
C1 | 0.3008 (11) | −0.1557 (11) | 0.1718 (11) | 0.061 (2) | |
H1A | 0.2616 | −0.1989 | 0.0627 | 0.074* | |
H1B | 0.4106 | −0.0577 | 0.2104 | 0.074* | |
C2 | 0.3429 (14) | −0.2699 (13) | 0.2665 (12) | 0.076 (3) | |
H2A | 0.4438 | −0.2831 | 0.2612 | 0.091* | |
H2B | 0.3825 | −0.2252 | 0.3753 | 0.091* | |
C3 | −0.0429 (10) | −0.3229 (8) | 0.1328 (8) | 0.0461 (16) | |
H3A | −0.1473 | −0.3286 | 0.1462 | 0.055* | |
H3B | −0.0868 | −0.3692 | 0.0233 | 0.055* | |
C4 | 0.0455 (13) | −0.4120 (9) | 0.2328 (9) | 0.057 (2) | |
H4A | 0.0908 | −0.3632 | 0.3419 | 0.069* | |
H4B | −0.0471 | −0.5179 | 0.2077 | 0.069* | |
C5 | −0.1404 (11) | 0.0437 (9) | 0.2626 (8) | 0.0507 (18) | |
H5A | −0.2687 | −0.0030 | 0.1842 | 0.061* | |
H5B | −0.1054 | −0.0400 | 0.2873 | 0.061* | |
C6 | −0.1142 (12) | 0.1405 (12) | 0.4094 (9) | 0.063 (2) | |
H6A | −0.1485 | 0.2244 | 0.3839 | 0.076* | |
H6B | −0.1947 | 0.0749 | 0.4463 | 0.076* | |
C7 | 0.2141 (12) | 0.2538 (10) | 0.3612 (9) | 0.060 (2) | |
H7A | 0.2585 | 0.1757 | 0.3878 | 0.072* | |
H7B | 0.3040 | 0.3369 | 0.3449 | 0.072* | |
C8 | 0.1905 (13) | 0.3200 (10) | 0.4944 (9) | 0.066 (2) | |
H8A | 0.3092 | 0.3717 | 0.5874 | 0.079* | |
H8B | 0.1460 | 0.3979 | 0.4666 | 0.079* | |
B1 | −0.4746 (15) | 0.2873 (13) | 0.1682 (14) | 0.070 (3) | |
F1 | −0.4548 (13) | 0.2388 (15) | 0.3108 (11) | 0.157 (4) | |
F2 | −0.646 (2) | 0.251 (3) | 0.094 (2) | 0.108 (8) | 0.51 (2) |
F2' | −0.543 (4) | 0.398 (3) | 0.174 (2) | 0.134 (10) | 0.49 (2) |
F3 | −0.447 (3) | 0.172 (3) | 0.0910 (16) | 0.121 (8) | 0.51 (2) |
F3' | −0.607 (5) | 0.172 (3) | 0.069 (4) | 0.23 (2) | 0.49 (2) |
F4 | −0.348 (4) | 0.412 (3) | 0.216 (3) | 0.191 (18) | 0.51 (2) |
F4' | −0.325 (4) | 0.350 (6) | 0.168 (6) | 0.24 (2) | 0.49 (2) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Pd | 0.0707 (6) | 0.0420 (4) | 0.0305 (4) | 0.0368 (4) | 0.0350 (4) | 0.0191 (3) |
S1 | 0.0724 (12) | 0.0431 (9) | 0.0329 (8) | 0.0363 (9) | 0.0297 (8) | 0.0181 (7) |
S2 | 0.0823 (13) | 0.0502 (10) | 0.0344 (8) | 0.0455 (10) | 0.0384 (9) | 0.0216 (7) |
O1 | 0.093 (4) | 0.071 (4) | 0.067 (4) | 0.062 (4) | 0.045 (3) | 0.031 (3) |
O2 | 0.118 (5) | 0.083 (4) | 0.034 (3) | 0.066 (4) | 0.043 (3) | 0.029 (3) |
C1 | 0.059 (5) | 0.079 (6) | 0.061 (5) | 0.040 (4) | 0.029 (4) | 0.030 (4) |
C2 | 0.079 (6) | 0.102 (8) | 0.074 (6) | 0.067 (6) | 0.034 (5) | 0.039 (6) |
C3 | 0.069 (5) | 0.045 (4) | 0.049 (4) | 0.034 (4) | 0.040 (4) | 0.021 (3) |
C4 | 0.101 (6) | 0.053 (4) | 0.058 (5) | 0.052 (4) | 0.054 (5) | 0.031 (4) |
C5 | 0.063 (5) | 0.070 (5) | 0.038 (4) | 0.038 (4) | 0.033 (3) | 0.016 (3) |
C6 | 0.090 (6) | 0.095 (6) | 0.046 (4) | 0.059 (5) | 0.050 (4) | 0.033 (4) |
C7 | 0.077 (5) | 0.050 (5) | 0.054 (5) | 0.028 (4) | 0.032 (4) | 0.004 (3) |
C8 | 0.095 (6) | 0.059 (5) | 0.039 (4) | 0.045 (5) | 0.020 (4) | −0.001 (4) |
B1 | 0.055 (7) | 0.059 (7) | 0.077 (7) | 0.010 (6) | 0.031 (5) | −0.004 (5) |
F1 | 0.179 (8) | 0.258 (12) | 0.120 (7) | 0.149 (8) | 0.093 (6) | 0.088 (7) |
F2 | 0.063 (10) | 0.16 (2) | 0.114 (14) | 0.055 (14) | 0.045 (10) | 0.038 (15) |
F2' | 0.17 (2) | 0.15 (2) | 0.112 (14) | 0.111 (19) | 0.053 (13) | 0.038 (13) |
F3 | 0.183 (19) | 0.18 (2) | 0.065 (8) | 0.128 (17) | 0.070 (10) | 0.032 (9) |
F3' | 0.21 (4) | 0.12 (2) | 0.22 (3) | −0.02 (2) | 0.07 (2) | −0.09 (2) |
F4 | 0.15 (2) | 0.119 (16) | 0.19 (2) | −0.073 (16) | 0.117 (18) | −0.086 (15) |
F4' | 0.19 (3) | 0.32 (5) | 0.44 (6) | 0.18 (3) | 0.26 (4) | 0.27 (5) |
Pd—S1 | 2.3406 (17) | C7—C8 | 1.522 (11) |
Pd—S1i | 2.3406 (17) | B1—F4 | 1.180 (19) |
Pd—S2i | 2.3293 (17) | B1—F3' | 1.22 (2) |
Pd—S2 | 2.3293 (17) | B1—F4' | 1.24 (2) |
S1—C1 | 1.799 (9) | B1—F2 | 1.278 (18) |
S1—C3 | 1.803 (7) | B1—F2' | 1.41 (2) |
S2—C5 | 1.809 (7) | B1—F3 | 1.436 (19) |
S2—C7 | 1.782 (8) | B1—F1 | 1.453 (14) |
O1—C2 | 1.414 (12) | F2—F3' | 0.99 (4) |
O1—C4 | 1.403 (10) | F2—F2' | 1.31 (3) |
O2—C6 | 1.401 (10) | F2'—F4 | 1.56 (3) |
O2—C8 | 1.403 (11) | F3—F3' | 1.35 (4) |
C1—C2 | 1.529 (12) | F3—F4' | 1.55 (5) |
C3—C4 | 1.507 (10) | F4—F4' | 0.86 (4) |
C5—C6 | 1.523 (10) | ||
S2i—Pd—S2 | 180.00 (8) | F2—B1—F2' | 58.1 (13) |
S1i—Pd—S2 | 89.48 (6) | F4—B1—F3 | 111.8 (18) |
S1—Pd—S2 | 90.52 (6) | F3'—B1—F3 | 61 (2) |
S1i—Pd—S2i | 90.52 (6) | F4'—B1—F3 | 70 (2) |
S2—Pd—S1i | 89.48 (6) | F2—B1—F3 | 106.2 (16) |
S1—Pd—S1i | 180.00 (9) | F2'—B1—F3 | 154.8 (14) |
Pd—S1—C1 | 111.3 (3) | F4—B1—F1 | 102.6 (16) |
Pd—S1—C3 | 108.4 (2) | F3'—B1—F1 | 102 (2) |
Pd—S2—C5 | 106.2 (3) | F4'—B1—F1 | 112 (2) |
Pd—S2—C7 | 111.7 (3) | F2—B1—F1 | 103.2 (11) |
C1—S1—C3 | 97.7 (4) | F2'—B1—F1 | 102.6 (12) |
C5—S2—C7 | 98.7 (4) | F3—B1—F1 | 100.3 (12) |
C2—O1—C4 | 112.6 (7) | F3'—F2—B1 | 64 (2) |
C6—O2—C8 | 113.0 (6) | F3'—F2—F2' | 128 (3) |
C2—C1—S1 | 109.7 (6) | B1—F2—F2' | 65.9 (13) |
O1—C2—C1 | 113.4 (7) | F2—F2'—B1 | 56.0 (11) |
C4—C3—S1 | 109.6 (6) | F2—F2'—F4 | 101.1 (16) |
O1—C4—C3 | 113.8 (6) | B1—F2'—F4 | 46.6 (11) |
C6—C5—S2 | 109.6 (6) | F3'—F3—B1 | 51.7 (11) |
O2—C6—C5 | 111.8 (7) | F3'—F3—F4' | 96.8 (17) |
C8—C7—S2 | 109.7 (6) | B1—F3—F4' | 48.9 (11) |
O2—C8—C7 | 112.7 (7) | F2—F3'—B1 | 69.9 (17) |
F4—B1—F3' | 156 (2) | F2—F3'—F3 | 136 (3) |
F4—B1—F4' | 42 (2) | B1—F3'—F3 | 68 (2) |
F3'—B1—F4' | 124 (3) | F4'—F4—B1 | 73 (3) |
F4—B1—F2 | 129 (2) | F4'—F4—F2' | 126 (4) |
F3'—B1—F2 | 47 (2) | B1—F4—F2' | 60.0 (14) |
F4'—B1—F2 | 145 (2) | F4—F4'—B1 | 65.5 (19) |
F4—B1—F2' | 73 (2) | F4—F4'—F3 | 126 (3) |
F3'—B1—F2' | 104 (2) | B1—F4'—F3 | 60.8 (18) |
F4'—B1—F2' | 110 (2) |
Symmetry code: (i) −x, −y, −z. |
Experimental details
(I) | (II) | |
Crystal data | ||
Chemical formula | [Pd(C2H6S)4](BF4)2 | [Pd(C4H8OS)4](BF4)2 |
Mr | 528.53 | 696.68 |
Crystal system, space group | Monoclinic, P21/n | Triclinic, P1 |
Temperature (K) | 293 | 293 |
a, b, c (Å) | 8.4505 (17), 9.955 (2), 12.172 (2) | 8.8804 (18), 9.5397 (19), 9.6999 (19) |
α, β, γ (°) | 90, 98.99 (3), 90 | 94.11 (3), 114.12 (3), 111.79 (3) |
V (Å3) | 1011.4 (3) | 671.8 (2) |
Z | 2 | 1 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 1.39 | 1.08 |
Crystal size (mm) | 0.3 × 0.1 × 0.1 | 0.20 × 0.14 × 0.12 |
Data collection | ||
Diffractometer | Bruker SMART CCD area-detector diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | Empirical (using intensity measurements) (SADABS; Sheldrick, 1996) | Empirical (using intensity measurements) (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.595, 0.831 | 0.813, 0.882 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8129, 3087, 2408 | 4856, 3185, 2080 |
Rint | 0.028 | 0.050 |
(sin θ/λ)max (Å−1) | 0.738 | 0.658 |
Refinement | ||
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.127, 1.09 | 0.080, 0.203, 0.96 |
No. of reflections | 3087 | 3185 |
No. of parameters | 125 | 188 |
H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.77, −0.54 | 2.56, −2.61 |
Computer programs: SMART (Siemens, 1995), SAINT (Siemens, 1995), SAINT, SHELXS97 (Sheldrick, 1997a), SHELXL97 (Sheldrick, 1997a), DIAMOND (Brandenburg, 2000), SHELXTL (Sheldrick, 1997b).
Pd—S1 | 2.3375 (12) | S2—C3 | 1.814 (7) |
Pd—S2 | 2.3338 (12) | S2—C4 | 1.761 (6) |
Pd—S1' | 2.343 (8) | S1'—C1 | 1.700 (12) |
Pd—S2' | 2.325 (8) | S1'—C2 | 1.807 (12) |
S1—C1 | 1.764 (7) | S2'—C3 | 1.855 (12) |
S1—C2 | 1.792 (6) | S2'—C4 | 1.655 (11) |
S1i—Pd—S2 | 90.40 (5) | Pd—S1'—C1 | 113.3 (5) |
S1—Pd—S2 | 89.60 (5) | Pd—S1'—C2 | 105.0 (5) |
S1'—Pd—S2'i | 90.1 (3) | Pd—S2'—C3 | 103.0 (5) |
S1'i—Pd—S2'i | 89.9 (3) | Pd—S2'—C4 | 118.6 (6) |
Pd—S1—C1 | 111.0 (3) | C1—S1—C2 | 100.8 (4) |
Pd—S1—C2 | 105.7 (2) | C3—S2—C4 | 99.3 (4) |
Pd—S2—C3 | 104.0 (2) | C1—S1'—C2 | 102.7 (6) |
Pd—S2—C4 | 113.6 (2) | C3—S2'—C4 | 101.6 (6) |
Symmetry code: (i) −x, −y, −z. |
Pd—S1 | 2.3406 (17) | S2—C7 | 1.782 (8) |
Pd—S2 | 2.3293 (17) | O1—C2 | 1.414 (12) |
S1—C1 | 1.799 (9) | O1—C4 | 1.403 (10) |
S1—C3 | 1.803 (7) | O2—C6 | 1.401 (10) |
S2—C5 | 1.809 (7) | O2—C8 | 1.403 (11) |
S1i—Pd—S2 | 89.48 (6) | Pd—S2—C7 | 111.7 (3) |
S1—Pd—S2 | 90.52 (6) | C1—S1—C3 | 97.7 (4) |
Pd—S1—C1 | 111.3 (3) | C5—S2—C7 | 98.7 (4) |
Pd—S1—C3 | 108.4 (2) | C2—O1—C4 | 112.6 (7) |
Pd—S2—C5 | 106.2 (3) | C6—O2—C8 | 113.0 (6) |
Symmetry code: (i) −x, −y, −z. |
Compound | M-S | ROP |
(I)c | 2.3338 (12)a | 0.429 |
2.325 (8)b | ||
2.3375 (12)a | 0.427 | |
2.343 (8)b | ||
(II)c | 2.3406 (17) | 0.427 |
2.3293 (17) | 0.431 | |
[Pd(tx)4](BF4)2.4CH3NO2d | 2.334 (1) | |
2.334 (1) | ||
[Pd(dms)4](ClO4)2e | 2.3347 (17) | |
2.3359 (17) | ||
2.344 (6) | ||
2.351 (6) | ||
[Pt(dms)4](ClO4)2e | 2.312 (9) | |
2.3122 (14) | ||
2.3181 (13) | ||
2.329 (9) | ||
[Pt(dms)4](CF3SO3)2f | 2.317 (3) | |
2.318 (3) | ||
2.319 (4) | ||
2.321 (4) | ||
[Pt(tx)4](CF3SO3)2.H2Of | 2.321 (2) | |
2.318 (2) |
a These distances correspond to the S atoms of the major
component. The ROP values are only calculated using those bonds. b The S atoms of the minor component. References: c) This work; d) Moullet et al., (1997); e) Johansson & Oskarsson, (2001); f) Bugarcic et al., (1991); |
The 1,4-oxathiane (tx) ligand possesses two potential donor sites, i.e. the S and the O atoms. PdII and PtII are soft acceptors and sulfur bonding is predominant, but in the tetrakis(dimethyl sulfoxide) complexes of PdII and PtII, two S-bonded and two O-bonded ligands are observed in a cis-arrangement (Johnson et al., 1981; Elding & Oskarsson, 1987). A previously determined palladium(II) tetrakis(1,4-oxathiane) structure, [Pd(tx)4](BF4)2·4CH3NO2 (Moullet et al., 1997), was found to contain four S-bonded tx ligands, and the same arrangement was found for the platinum compound [Pt(tx)4](CF3SO3)2·H2O (Bugarcic et al., 1991). There seems to be no reported crystal structure for a Pd complex with four dimethyl sulfide ligands (dms), but for PtII, the crystal structure of [Pt(dms)4](CF3SO3)2 is known (Bugarcic et al., 1991).
The structures of the title compounds, (I) and (II), have been determined firstly in order to study possible differences in bonding to PdII between a small thioether ligand, dimethylsulfide (dms), and a larger ambidentate ligand, 1,4-oxathiane (tx), with certain steric demands imposed by the ring structure, and secondly, to make geometric comparisons with analogous PtII complexes. \sch
The structure of (I) is shown in Fig. 1 and selected geometric parameters are given in Table 1. The compound consists of a square-planar mononuclear cationic complex, [Pd(dms)4]2+, with BF4- as counterions. The Pd atom is positioned at an inversion centre, giving a perfectly planar PdS4 coordination with S—Pd—S angles of 89.60 (5) and 90.40 (5)°. The dms groups are disordered, as the S atom occupies two different positions, with occupancy factors refined to 0.875 (3) for S1 and S2, and 0.125 (3) for S1' and S2'. The same type of disorder was reported for [Pt(dms)4](CF3SO3)2 (Bugarcic et al., 1991). The C atoms have a paddle-wheel-like arrangement, i.e. they are staggered with respect to the coordination plane and all directed in the same way. One tetrafluoroborate anion is located on each side of the coordination plane, completing an approximate octahedral coordination of the Pd atom, with the shortest distance to Pd being 3.142 (1) Å for Pd—F2(x, y, z; -x, -y, -z) (Fig. 1).
The structure of (II) is shown in Fig. 2 and selected geometric parameters are given in Table 2. The compound consists of a square-planar mononuclear cationic complex, [Pd(tx)4]2+, with S-bonded tx ligands and with BF4- as counterions. The Pd atom is positioned at an inversion centre, giving perfect planar coordination around the metal with S—Pd—S angles of 89.48 (6) and 90.52 (6)°. The tx ligands have a chair conformation. The two C atoms bonded to S in each of these ligands adopt the same paddle-wheel like conformation found in the dms complex. Three of the four F atoms in the tetrafluoroborate ions are disordered over two positions, with approximately 50% in each position, while one F position is fully occupied. The tetrafluoroborate ions are located on each side of the coordination plane, giving an approximately octahedral coordination of the Pd atom, with the closest interaction with Pd being 2.87 (8) Å for Pd—F2(1 + x, y, z; -1 - x, -y, -z) and 3.00 (6) Å for Pd—F3'(1 + x, y, z; -1 - x, -y, -z) (Fig. 2).
The arrangement of the thioether ligands around Pd in (I) is similar to the geometry found in [Pd(tx)4](BF4)2·4CH3NO2 (Moullet et al., 1997) and in the analogous Pt compounds [Pt(dms)4](CF3SO3)2 and [Pt(tx)4](CF3SO3)2·H2O (Bugarcic et al., 1991). The dms ligands are found to be disordered in a similar fashion in the Pt-dms complex. The geometry of the tx ligands in (II) is also similar to that found for [Pd(tx)4](BF4)2·4CH3NO2, but with slightly shorter S—C distances, in the range 1.782 (8)–1.809 (7) Å, compared with 1.806 (4)–1.827 (4) Å.
In the earlier reported tetrakis(thioxane) Pd complex (Moullet et al., 1997), the CH3NO2 solvent molecules occupy the octahedral coordination sites, instead of the BF4 anions, with a Pd—O distance of 3.115 (2) Å. In [Pt(dms)4](CF3SO3)2 and [Pt(tx)4](CF3SO3)2·H2O (Bugarcic et al., 1991), no close distances between the cations and the anions or the solvent molecules were found. For [Pd(dmso)4](BF4)2·(CH3)2SO (dmso is dimethyl sulfoxide; Johnson et al., 1981), a Pd—Osolvent distance of 3.14 (3) Å was reported, but no distances to the anions that occupy the other side of the coordination plane were reported.
The geometry of a metal complex in the solid state is determined by the interplay between inter- and intramolecular forces. The Pd—S bonds within [Pd(dms)4]2+ and [Pd(tx)4]2+ experience different intermolecular forces, and their lengths are given in Table 3. The observed range in [Pd(dms)4]2+ is 2.325 (8)–2.351 (6) Å, with a mean value of 2.338 (8) Å. The error of the mean is calculated as [Σ(xi - M)2/(n-1)]1/2, where M is the mean and n the number of distances. The corresponding range for [Pd(tx)4]2+ is 2.329 (2)–2.341 (2) Å, with a mean of 2.334 (5) Å.
We have also studied the bonding at the extended Hückel level by calculating the reduced overlap population (ROP) in the Pd—S bonds using the program CACAO (Maelli & Proserpio, 1990) and the crystallographically observed geometries. No significant differences in neither the Pd—S bond lengths nor the ROP values are observed between the two title compounds (Table 3). The similarities in bonding are of course the result not only of similar bond distances but also of similar orientation of the ligands with respect to the coordination plane.
In conclusion, no significant differences in bonding between PdII and the ligands dimethylsulfide and 1,4-oxathiane have been observed, and it seems justified to calculate a mean value for the Pd—S distances of 2.337 (7) Å, where the error is calculated as given above. The mean value for the Pt—S distances in Table 3 is 2.319 (5) Å, and the difference of 0.018 (8) Å between the mean Pd—S and Pt—S distances is probably significant.