Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270199015723/ta1253sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270199015723/ta1253Isup2.hkl |
CCDC reference: 143263
The air-dried, powdered roots of Vladimiria Soulilei Liarke (4.5 kg) were extracted with Et2O for 7 d. When this Et2O extract was concentrated, crystals of (I) were precipitated. The experimental sample was recrystallized from ethyl alcohol/acetone mixed solvent.
Data collection: CAD-4 Software (Enraf-Nonius, 1989?); cell refinement: CAD-4 Software; data reduction: MolEN (Fair, 1990?); program(s) used to solve structure: SHELX97 (Sheldrick, 1997); program(s) used to refine structure: SHELX97; molecular graphics: XP (Siemens, 1994?).
Fig. 1. A view of (I) showing the labelling of the non-H atoms. Displacement ellipsoids are shown at the 50% probability level and H atoms are drawn as small circles of arbitrary radius. |
C15H20O3 | Dx = 1.153 Mg m−3 |
Mr = 248.31 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, P212121 | Cell parameters from 25 reflections |
a = 5.553 (1) Å | θ = 10–20° |
b = 12.340 (1) Å | µ = 0.08 mm−1 |
c = 20.875 (2) Å | T = 293 K |
V = 1430.4 (3) Å3 | Block, colourless |
Z = 4 | 0.5 × 0.5 × 0.4 mm |
F(000) = 536 |
Enraf-Nonius CAD-4 diffractometer | Rint = 0.000 |
Radiation source: fine-focus sealed tube | θmax = 30.6°, θmin = 1.9° |
Graphite monochromator | h = 0→7 |
ω/2θ scans | k = 0→17 |
2409 measured reflections | l = 0→29 |
2409 independent reflections | 3 standard reflections every 60 min |
2194 reflections with I > 2σ(I) | intensity decay: <0.1% |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.031 | H-atom parameters constrained |
wR(F2) = 0.137 | Calculated w = 1/[σ2(Fo2) + (0.0644P)2 + 0.1316P] where P = (Fo2 + 2Fc2)/3 |
S = 1.24 | (Δ/σ)max < 0.001 |
2409 reflections | Δρmax = 0.14 e Å−3 |
164 parameters | Δρmin = −0.14 e Å−3 |
0 restraints | Extinction correction: SHELX97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.044 (5) |
C15H20O3 | V = 1430.4 (3) Å3 |
Mr = 248.31 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 5.553 (1) Å | µ = 0.08 mm−1 |
b = 12.340 (1) Å | T = 293 K |
c = 20.875 (2) Å | 0.5 × 0.5 × 0.4 mm |
Enraf-Nonius CAD-4 diffractometer | Rint = 0.000 |
2409 measured reflections | 3 standard reflections every 60 min |
2409 independent reflections | intensity decay: <0.1% |
2194 reflections with I > 2σ(I) |
R[F2 > 2σ(F2)] = 0.031 | 0 restraints |
wR(F2) = 0.137 | H-atom parameters constrained |
S = 1.24 | Δρmax = 0.14 e Å−3 |
2409 reflections | Δρmin = −0.14 e Å−3 |
164 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.1530 (3) | 0.98913 (11) | 0.84433 (6) | 0.0505 (3) | |
O2 | 0.2772 (3) | 0.84783 (15) | 0.90175 (10) | 0.0757 (5) | |
O3 | 0.0377 (3) | 1.24741 (12) | 0.72391 (9) | 0.0688 (5) | |
C1 | −0.4442 (4) | 1.24714 (17) | 0.81895 (12) | 0.0593 (5) | |
H1 | −0.5488 | 1.1991 | 0.8176 | 0.050* | |
C2 | −0.3663 (5) | 1.28685 (17) | 0.75380 (11) | 0.0622 (5) | |
H2A | −0.2974 | 1.3577 | 0.7565 | 0.050* | |
H2B | −0.4707 | 1.2794 | 0.7227 | 0.050* | |
C3 | −0.1630 (4) | 1.21412 (16) | 0.73249 (9) | 0.0519 (4) | |
C4 | −0.2205 (4) | 1.09607 (15) | 0.72418 (9) | 0.0521 (4) | |
C5 | −0.1687 (4) | 1.02388 (14) | 0.76916 (8) | 0.0473 (4) | |
H5 | −0.2065 | 0.9498 | 0.7638 | 0.050* | |
C6 | −0.0679 (3) | 1.05086 (13) | 0.83384 (8) | 0.0441 (4) | |
H6 | −0.0089 | 1.1234 | 0.8331 | 0.050* | |
C7 | −0.2346 (4) | 1.02105 (15) | 0.89024 (8) | 0.0484 (4) | |
H7 | −0.3950 | 1.0170 | 0.8743 | 0.050* | |
C8 | −0.2263 (5) | 1.10460 (18) | 0.94451 (9) | 0.0643 (6) | |
H8A | −0.2714 | 1.0756 | 0.9837 | 0.050* | |
H8B | −0.0659 | 1.1253 | 0.9490 | 0.050* | |
C9 | −0.3965 (6) | 1.2015 (2) | 0.93315 (12) | 0.0754 (7) | |
H9A | −0.3961 | 1.2469 | 0.9667 | 0.050* | |
H9B | −0.5422 | 1.1728 | 0.9253 | 0.050* | |
C10 | −0.3330 (5) | 1.26599 (16) | 0.87372 (11) | 0.0628 (5) | |
C11 | −0.1430 (4) | 0.90767 (18) | 0.90837 (10) | 0.0556 (5) | |
H11 | −0.2097 | 0.8596 | 0.8825 | 0.050* | |
C12 | 0.1170 (4) | 0.90783 (17) | 0.88695 (10) | 0.0555 (5) | |
C13 | −0.1707 (6) | 0.8678 (3) | 0.97712 (13) | 0.0848 (8) | |
H13A | −0.0702 | 0.9217 | 1.0079 | 0.050* | |
H13B | −0.1405 | 0.8021 | 0.9731 | 0.050* | |
H13C | −0.3342 | 0.8778 | 0.9918 | 0.050* | |
C14 | −0.3411 (7) | 1.0670 (2) | 0.66214 (12) | 0.0821 (8) | |
H14A | −0.3599 | 0.9873 | 0.6574 | 0.050* | |
H14B | −0.2442 | 1.0919 | 0.6331 | 0.050* | |
H14C | −0.4931 | 1.1067 | 0.6627 | 0.050* | |
C15 | −0.1267 (7) | 1.3428 (2) | 0.87983 (15) | 0.0811 (8) | |
H15A | −0.1010 | 1.3872 | 0.8482 | 0.050* | |
H15B | −0.2049 | 1.3997 | 0.9138 | 0.050* | |
H15C | −0.0217 | 1.3136 | 0.9007 | 0.050* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0453 (6) | 0.0494 (6) | 0.0568 (7) | −0.0010 (6) | −0.0020 (6) | 0.0064 (6) |
O2 | 0.0613 (9) | 0.0761 (10) | 0.0898 (12) | 0.0113 (9) | −0.0170 (9) | 0.0202 (9) |
O3 | 0.0539 (8) | 0.0558 (8) | 0.0965 (12) | −0.0079 (7) | 0.0025 (8) | 0.0204 (8) |
C1 | 0.0501 (10) | 0.0521 (9) | 0.0756 (13) | 0.0085 (9) | 0.0063 (10) | −0.0023 (9) |
C2 | 0.0628 (12) | 0.0512 (9) | 0.0726 (12) | 0.0036 (10) | −0.0075 (11) | 0.0052 (9) |
C3 | 0.0571 (10) | 0.0495 (8) | 0.0490 (8) | −0.0014 (9) | −0.0071 (8) | 0.0124 (7) |
C4 | 0.0592 (11) | 0.0498 (8) | 0.0474 (8) | −0.0020 (9) | −0.0028 (8) | −0.0015 (7) |
C5 | 0.0540 (9) | 0.0397 (7) | 0.0482 (8) | −0.0028 (8) | −0.0042 (8) | −0.0048 (6) |
C6 | 0.0489 (9) | 0.0357 (6) | 0.0478 (8) | −0.0034 (7) | −0.0052 (7) | 0.0010 (6) |
C7 | 0.0453 (8) | 0.0550 (9) | 0.0450 (8) | −0.0044 (8) | −0.0003 (7) | 0.0049 (7) |
C8 | 0.0826 (16) | 0.0663 (11) | 0.0439 (8) | 0.0007 (13) | 0.0060 (10) | −0.0007 (8) |
C9 | 0.0879 (18) | 0.0760 (14) | 0.0623 (12) | 0.0112 (15) | 0.0200 (13) | −0.0122 (11) |
C10 | 0.0660 (13) | 0.0487 (9) | 0.0737 (12) | 0.0108 (10) | 0.0103 (11) | −0.0118 (9) |
C11 | 0.0536 (10) | 0.0542 (10) | 0.0590 (10) | −0.0074 (9) | −0.0075 (9) | 0.0122 (8) |
C12 | 0.0578 (11) | 0.0527 (9) | 0.0559 (9) | −0.0071 (9) | −0.0114 (9) | 0.0064 (8) |
C13 | 0.0876 (18) | 0.0940 (18) | 0.0730 (14) | 0.0086 (18) | 0.0084 (15) | 0.0349 (14) |
C14 | 0.110 (2) | 0.0721 (14) | 0.0640 (12) | −0.0019 (17) | −0.0298 (15) | 0.0013 (11) |
C15 | 0.0899 (19) | 0.0623 (12) | 0.0912 (18) | −0.0111 (15) | −0.0061 (17) | −0.0061 (13) |
O1—C12 | 1.356 (2) | C5—C6 | 1.499 (2) |
O1—C6 | 1.461 (2) | C6—C7 | 1.542 (3) |
O2—C12 | 1.198 (3) | C7—C8 | 1.532 (3) |
O3—C3 | 1.201 (3) | C7—C11 | 1.536 (3) |
C1—C10 | 1.320 (3) | C8—C9 | 1.542 (4) |
C1—C2 | 1.509 (3) | C9—C10 | 1.515 (4) |
C2—C3 | 1.510 (3) | C10—C15 | 1.493 (4) |
C3—C4 | 1.501 (3) | C11—C12 | 1.511 (3) |
C4—C5 | 1.326 (3) | C11—C13 | 1.525 (3) |
C4—C14 | 1.501 (3) | ||
C12—O1—C6 | 111.12 (15) | C8—C7—C6 | 112.69 (16) |
C10—C1—C2 | 126.1 (2) | C11—C7—C6 | 101.92 (16) |
C1—C2—C3 | 106.68 (17) | C7—C8—C9 | 112.93 (19) |
O3—C3—C4 | 120.8 (2) | C10—C9—C8 | 113.0 (2) |
O3—C3—C2 | 122.33 (19) | C1—C10—C15 | 123.0 (2) |
C4—C3—C2 | 116.8 (2) | C1—C10—C9 | 120.5 (2) |
C5—C4—C14 | 123.20 (19) | C15—C10—C9 | 116.2 (2) |
C5—C4—C3 | 121.59 (17) | C12—C11—C13 | 112.0 (2) |
C14—C4—C3 | 115.21 (18) | C12—C11—C7 | 104.03 (17) |
C4—C5—C6 | 124.73 (15) | C13—C11—C7 | 119.5 (2) |
O1—C6—C5 | 109.42 (14) | O2—C12—O1 | 121.1 (2) |
O1—C6—C7 | 105.39 (13) | O2—C12—C11 | 129.2 (2) |
C5—C6—C7 | 114.25 (15) | O1—C12—C11 | 109.63 (18) |
C8—C7—C11 | 114.88 (16) |
Experimental details
Crystal data | |
Chemical formula | C15H20O3 |
Mr | 248.31 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 293 |
a, b, c (Å) | 5.553 (1), 12.340 (1), 20.875 (2) |
V (Å3) | 1430.4 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.5 × 0.5 × 0.4 |
Data collection | |
Diffractometer | Enraf-Nonius CAD-4 diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 2409, 2409, 2194 |
Rint | 0.000 |
(sin θ/λ)max (Å−1) | 0.717 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.031, 0.137, 1.24 |
No. of reflections | 2409 |
No. of parameters | 164 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.14, −0.14 |
Computer programs: CAD-4 Software (Enraf-Nonius, 1989?), CAD-4 Software, MolEN (Fair, 1990?), SHELX97 (Sheldrick, 1997), SHELX97, XP (Siemens, 1994?).
This work forms part of a series of research on traditional Chinese medicinal herbs aimed at looking for bioactive drugs. The title compound, (I), was extracted from the dried root of Vladimiria Soulilei Liarke, which is widespread in the west of Sichuan province and the south of neighbouring Gansu province. The herb is used for relieving uneasiness and stomach ache in traditional Chinese medicine, and it also has some antitumour function. Similar structures of sesquiterpene lactones have been reported (Breton et al., 1985; Gomez-Rodriguez et al., 1985). \scheme
The conformation of the ten-membered ring of (I) is boat-chair-chair (Fig. 1), and it is slightly distorted owing to the influence of the substituents. The dihedral angles between the planes 1 (C3/C2/C4) and 2 (C1/C2/C4/C5), 2 and 3 (C10/C1/C5/C6), 3 and 4 (C9/C10/C6/C7), and 4 and 5 (C8/C7/C9) are 64.2 (3), 46.2 (1), 63.2 (1) and 62.9 (2)°, respectively. The lactone ring has an envelope conformation.