Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270103006899/sk1631sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270103006899/sk1631IIIsup2.hkl |
CCDC reference: 214149
Complex (III) (1-hexen-2-yl)pyridinebis(dimethylglyoximato)cobalt(III) was prepared as described by Pickin & Welker (2000). Crystals of (III) were grown by slow diffusion of pentane into a 1,2- dichloroethane solution of (III) at 253 K. The isomerization kinetics experiment was carried out in CDCl3. The rate constant was determined by analysis of the appearance of the alkenyl methyl signal, and this analysis was carried out for several half lives. An array of 1H spectra (acquisition time of 1.0 min) were acquired every 10.0 min for 170 min (nine half lives). All spectra were processed and phased with the same parameters. The appearance of the alkenyl methyl was integrated relative to the ortho-pyridine signal. SigmaPlot 2000 (SPSS Science Inc. Chicago, IL) was used to determine the rate constant for an integration versus time plot. The equation for an exponentially rising peak with a maximum of I = Io(1 − e-kt) was used to fit the data. A rate constant of 3.9 x 10−2 min−1 (R = 0.9707) with a half life of 18 min was calculated.
Atoms H3O, H4O, H9A and H9B were located from a difference Fourier map and refined as independent isotropic atoms. The methyl groups (C5, C6, C7, C8, C14 and their H atoms) were refined as rigid rotors, with idealized sp3-hybridized geometry and a C—H bond length of 0.97 Å. The remaining H atoms were included in the structure-factor calculations as idealized atoms (assuming sp2– or sp3-hybridization of the C atoms and C—H bond lengths of 0.94–0.98 Å) riding on their respective C atoms. The isotropic displacement parameters for atoms H3O, H4O, H9A and H9B refined to final Uiso values of 0.07 (3), 0.02 (1), 0.05 (2) and 0.03 (1) Å2, respectively. The Uiso parameters of the remaining H atoms were fixed at 1.2 (non-methyl) or 1.5 (methyl) times the Ueq values of the C atoms to which they are covalently bonded.
Data collection: XSCANS (Siemens, 1996); cell refinement: XSCANS; data reduction: Bruker SHELXTL-NT (Bruker, 2001); program(s) used to solve structure: Bruker SHELXTL-NT; program(s) used to refine structure: Bruker SHELXTL-NT; molecular graphics: Bruker SHELXTL-NT; software used to prepare material for publication: Bruker SHELXTL-NT.
[Co(C6H11)(C4H7N2O2)2(C5H5N)] | F(000) = 476 |
Mr = 451.41 | Dx = 1.402 Mg m−3 |
Monoclinic, Pn | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P -2yac | Cell parameters from 39 reflections |
a = 8.268 (3) Å | θ = 3.0–12.0° |
b = 11.757 (3) Å | µ = 0.84 mm−1 |
c = 11.0253 (19) Å | T = 228 K |
β = 93.721 (18)° | Chunk, orange |
V = 1069.5 (4) Å3 | 0.45 × 0.24 × 0.18 mm |
Z = 2 |
Bruker P4 diffractometer | 2660 reflections with I > 2σ(I) |
Radiation source: normal-focus sealed tube | Rint = 0.034 |
Graphite monochromator | θmax = 27.5°, θmin = 2.5° |
ω scans | h = −1→10 |
Absorption correction: ψ-scan North et al, 1968 | k = −15→1 |
Tmin = 0.151, Tmax = 0.187 | l = −14→14 |
3254 measured reflections | 3 standard reflections every 197 reflections |
2971 independent reflections | intensity decay: none |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.042 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.106 | w = 1/[σ2(Fo2) + (0.065P)2 + 0.1117P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max < 0.001 |
2971 reflections | Δρmax = 0.65 e Å−3 |
278 parameters | Δρmin = −0.24 e Å−3 |
2 restraints | Absolute structure: Flack (1983) |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.09 (2) |
[Co(C6H11)(C4H7N2O2)2(C5H5N)] | V = 1069.5 (4) Å3 |
Mr = 451.41 | Z = 2 |
Monoclinic, Pn | Mo Kα radiation |
a = 8.268 (3) Å | µ = 0.84 mm−1 |
b = 11.757 (3) Å | T = 228 K |
c = 11.0253 (19) Å | 0.45 × 0.24 × 0.18 mm |
β = 93.721 (18)° |
Bruker P4 diffractometer | 2660 reflections with I > 2σ(I) |
Absorption correction: ψ-scan North et al, 1968 | Rint = 0.034 |
Tmin = 0.151, Tmax = 0.187 | 3 standard reflections every 197 reflections |
3254 measured reflections | intensity decay: none |
2971 independent reflections |
R[F2 > 2σ(F2)] = 0.042 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.106 | Δρmax = 0.65 e Å−3 |
S = 1.05 | Δρmin = −0.24 e Å−3 |
2971 reflections | Absolute structure: Flack (1983) |
278 parameters | Absolute structure parameter: 0.09 (2) |
2 restraints |
Experimental. 'North, A. C. T., Phillips, D. C. & Mathews, F. S.(1968) Acta Cryst. A24, 351 − 359.' ? |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. Mean-plane data from final SHELXL refinement run: Least-squares planes (x,y,z in crystal coordinates) and deviations from them (* indicates atom used to define plane) 7.6344 (0.0044) x + 0.1455 (0.0317) y − 4.8822 (0.0115) z = 0.7147 (0.0090) * −0.0325 (0.0026) Co1 * 0.0320 (0.0045) N5 * 0.0165 (0.0047) C15 * −0.0033 (0.0045) C16 * −0.0260 (0.0053) C17 * −0.0071 (0.0044) C18 * 0.0204 (0.0044) C19 − 1.3599 (0.0069) N1 − 1.5311 (0.0064) N2 1.3006 (0.0068) N3 1.4951 (0.0067) N4 − 0.1043 (0.0063) C10 Rms deviation of fitted atoms = 0.0224 3.5592 (0.0052) x + 1.3958 (0.0068) y + 9.5362 (0.0048) z = 3.9570 (0.0024) Angle to previous plane (with approximate e.s.d.) = 86.81 (0.07) * 0.0186 (0.0016) Co1 * −0.0167 (0.0038) N1 * 0.0083 (0.0037) N2 * 0.0031 (0.0039) N3 * 0.0327 (0.0040) N4 * −0.0027 (0.0037) O1 * 0.0678 (0.0035) O2 * 0.0226 (0.0036) O3 * 0.0853 (0.0040) O4 * −0.0468 (0.0047) C1 * −0.0400 (0.0043) C2 * −0.0780 (0.0042) C3 * −0.0541 (0.0045) C4 2.1066 (0.0048) N5 − 1.9754 (0.0055) C10 Rms deviation of fitted atoms = 0.0455 7.4086 (0.0069) x + 1.3277 (0.0389) y − 5.3646 (0.0150) z = 0.7645 (0.0097) Angle to previous plane (with approximate e.s.d.) = 89.14 (0.09) * −0.0018 (0.0013) Co1 * −0.0028 (0.0020) C9 * 0.0070 (0.0050) C10 * −0.0025 (0.0018) C11 − 1.4621 (0.0066) N1 − 1.3739 (0.0069) N2 1.4668 (0.0065) N3 1.3986 (0.0067) N4 0.1274 (0.0093) C12 1.5361 (0.0095) C13 1.5814 (0.0122) C14 Rms deviation of fitted atoms = 0.0041 |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. The top 3 peaks (0.65 − 0.39 e/Å3) in the final difference Fourier map were within 0.86 Å of the Co atom. |
x | y | z | Uiso*/Ueq | ||
Co1 | 0.26605 (9) | 0.23452 (4) | 0.28328 (7) | 0.02091 (14) | |
O1 | 0.1761 (6) | 0.0104 (3) | 0.3474 (3) | 0.0387 (10) | |
O2 | 0.1011 (6) | 0.4426 (3) | 0.3195 (3) | 0.0368 (10) | |
O3 | 0.3598 (6) | 0.4588 (3) | 0.2159 (4) | 0.0390 (10) | |
H3O | 0.263 (11) | 0.461 (6) | 0.251 (6) | 0.07 (3)* | |
O4 | 0.4415 (6) | 0.0283 (3) | 0.2550 (4) | 0.0417 (10) | |
H4O | 0.358 (7) | 0.018 (4) | 0.279 (5) | 0.020 (14)* | |
N1 | 0.1340 (6) | 0.1222 (4) | 0.3453 (4) | 0.0270 (11) | |
N2 | 0.0984 (6) | 0.3290 (4) | 0.3309 (4) | 0.0262 (10) | |
N3 | 0.3960 (6) | 0.3468 (4) | 0.2167 (4) | 0.0278 (11) | |
N4 | 0.4370 (6) | 0.1398 (4) | 0.2348 (4) | 0.0277 (11) | |
N5 | 0.3841 (6) | 0.2545 (3) | 0.4553 (4) | 0.0241 (10) | |
C1 | −0.0014 (8) | 0.1559 (5) | 0.3877 (5) | 0.0324 (13) | |
C2 | −0.0216 (7) | 0.2788 (5) | 0.3780 (4) | 0.0321 (13) | |
C3 | 0.5241 (7) | 0.3126 (6) | 0.1654 (4) | 0.0336 (13) | |
C4 | 0.5483 (7) | 0.1910 (6) | 0.1767 (5) | 0.0323 (13) | |
C5 | −0.1183 (9) | 0.0761 (6) | 0.4390 (5) | 0.0531 (19) | |
H5A | −0.0765 | −0.0009 | 0.4357 | 0.080* | |
H5B | −0.2214 | 0.0805 | 0.3919 | 0.080* | |
H5C | −0.1334 | 0.0964 | 0.5228 | 0.080* | |
C6 | −0.1647 (8) | 0.3395 (6) | 0.4217 (5) | 0.0520 (17) | |
H6A | −0.1542 | 0.4204 | 0.4068 | 0.078* | |
H6B | −0.1707 | 0.3264 | 0.5081 | 0.078* | |
H6C | −0.2626 | 0.3114 | 0.3785 | 0.078* | |
C7 | 0.6314 (9) | 0.3922 (6) | 0.1004 (6) | 0.0590 (19) | |
H7A | 0.5899 | 0.4691 | 0.1051 | 0.089* | |
H7B | 0.6329 | 0.3697 | 0.0158 | 0.089* | |
H7C | 0.7405 | 0.3891 | 0.1382 | 0.089* | |
C8 | 0.6881 (8) | 0.1285 (6) | 0.1277 (6) | 0.0500 (17) | |
H8A | 0.6793 | 0.0481 | 0.1457 | 0.075* | |
H8B | 0.7890 | 0.1579 | 0.1653 | 0.075* | |
H8C | 0.6866 | 0.1392 | 0.0404 | 0.075* | |
C9 | 0.1361 (8) | 0.1106 (5) | 0.0733 (5) | 0.0369 (12) | |
H9A | 0.079 (8) | 0.107 (5) | −0.012 (5) | 0.049 (17)* | |
H9B | 0.171 (7) | 0.041 (4) | 0.111 (4) | 0.027 (13)* | |
C10 | 0.1523 (7) | 0.2142 (4) | 0.1196 (5) | 0.0260 (11) | |
C11 | 0.0870 (7) | 0.3174 (4) | 0.0566 (4) | 0.0326 (12) | |
H11A | 0.1749 | 0.3731 | 0.0549 | 0.039* | |
H11B | 0.0040 | 0.3500 | 0.1058 | 0.039* | |
C12 | 0.0116 (7) | 0.3030 (5) | −0.0752 (4) | 0.0352 (12) | |
H12A | −0.0595 | 0.2362 | −0.0783 | 0.042* | |
H12B | −0.0554 | 0.3697 | −0.0965 | 0.042* | |
C13 | 0.1364 (7) | 0.2890 (5) | −0.1689 (4) | 0.0467 (15) | |
H13A | 0.2015 | 0.3585 | −0.1719 | 0.056* | |
H13B | 0.2093 | 0.2261 | −0.1449 | 0.056* | |
C14 | 0.0563 (9) | 0.2653 (5) | −0.2939 (5) | 0.0547 (16) | |
H14A | 0.1388 | 0.2568 | −0.3519 | 0.082* | |
H14B | −0.0146 | 0.3282 | −0.3184 | 0.082* | |
H14C | −0.0067 | 0.1959 | −0.2915 | 0.082* | |
C15 | 0.4282 (7) | 0.1650 (4) | 0.5247 (4) | 0.0363 (12) | |
H15A | 0.4096 | 0.0916 | 0.4929 | 0.044* | |
C16 | 0.4991 (8) | 0.1753 (5) | 0.6400 (5) | 0.0465 (14) | |
H16A | 0.5296 | 0.1101 | 0.6854 | 0.056* | |
C17 | 0.5250 (8) | 0.2813 (5) | 0.6882 (5) | 0.0465 (15) | |
H17A | 0.5719 | 0.2906 | 0.7676 | 0.056* | |
C18 | 0.4802 (8) | 0.3744 (5) | 0.6172 (5) | 0.0441 (13) | |
H18A | 0.4974 | 0.4484 | 0.6475 | 0.053* | |
C19 | 0.4112 (7) | 0.3583 (4) | 0.5030 (5) | 0.0322 (12) | |
H19A | 0.3812 | 0.4223 | 0.4558 | 0.039* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Co1 | 0.0224 (2) | 0.0222 (2) | 0.0184 (2) | −0.0006 (4) | 0.00348 (16) | −0.0002 (3) |
O1 | 0.058 (3) | 0.0241 (17) | 0.0341 (19) | −0.0064 (18) | 0.004 (2) | 0.0034 (14) |
O2 | 0.051 (3) | 0.0305 (19) | 0.0283 (17) | 0.0132 (19) | −0.0001 (18) | −0.0032 (14) |
O3 | 0.052 (3) | 0.0228 (18) | 0.042 (2) | −0.0070 (19) | 0.001 (2) | 0.0050 (14) |
O4 | 0.047 (3) | 0.029 (2) | 0.049 (2) | 0.0070 (19) | 0.003 (2) | −0.0085 (17) |
N1 | 0.034 (3) | 0.028 (2) | 0.0191 (19) | −0.0042 (19) | −0.0022 (19) | 0.0011 (16) |
N2 | 0.028 (3) | 0.032 (2) | 0.0192 (18) | 0.0082 (19) | 0.0024 (18) | 0.0022 (15) |
N3 | 0.030 (3) | 0.031 (2) | 0.022 (2) | −0.0022 (18) | 0.0031 (19) | 0.0003 (15) |
N4 | 0.029 (3) | 0.027 (2) | 0.026 (2) | 0.0047 (19) | −0.002 (2) | −0.0044 (16) |
N5 | 0.023 (2) | 0.029 (2) | 0.0198 (19) | 0.0026 (18) | 0.0023 (17) | 0.0000 (16) |
C1 | 0.033 (3) | 0.042 (3) | 0.022 (2) | −0.008 (2) | 0.003 (2) | 0.002 (2) |
C2 | 0.026 (3) | 0.051 (4) | 0.019 (2) | 0.005 (3) | 0.001 (2) | 0.001 (2) |
C3 | 0.026 (3) | 0.050 (4) | 0.025 (3) | −0.007 (3) | 0.005 (2) | 0.003 (2) |
C4 | 0.020 (3) | 0.051 (4) | 0.027 (2) | 0.003 (3) | 0.003 (2) | −0.009 (2) |
C5 | 0.044 (4) | 0.085 (5) | 0.032 (3) | −0.018 (4) | 0.010 (3) | 0.014 (3) |
C6 | 0.034 (3) | 0.089 (5) | 0.033 (3) | 0.020 (3) | 0.003 (3) | −0.008 (3) |
C7 | 0.054 (4) | 0.066 (4) | 0.058 (4) | −0.021 (3) | 0.015 (4) | 0.016 (3) |
C8 | 0.034 (3) | 0.069 (4) | 0.048 (3) | 0.007 (3) | 0.011 (3) | −0.013 (3) |
C9 | 0.047 (3) | 0.037 (3) | 0.026 (2) | −0.002 (3) | −0.005 (2) | −0.004 (2) |
C10 | 0.023 (3) | 0.032 (3) | 0.023 (2) | 0.000 (2) | 0.003 (2) | −0.001 (2) |
C11 | 0.041 (3) | 0.034 (3) | 0.022 (2) | 0.004 (2) | 0.001 (2) | −0.0015 (19) |
C12 | 0.040 (3) | 0.041 (3) | 0.024 (2) | 0.001 (2) | −0.005 (2) | −0.004 (2) |
C13 | 0.051 (4) | 0.060 (4) | 0.029 (2) | −0.005 (3) | 0.006 (3) | 0.004 (2) |
C14 | 0.075 (4) | 0.064 (4) | 0.026 (2) | −0.003 (4) | 0.009 (3) | −0.002 (2) |
C15 | 0.046 (3) | 0.034 (3) | 0.029 (2) | 0.009 (2) | −0.002 (2) | 0.000 (2) |
C16 | 0.059 (4) | 0.049 (3) | 0.029 (2) | 0.017 (3) | −0.010 (3) | 0.002 (2) |
C17 | 0.051 (3) | 0.057 (4) | 0.029 (2) | 0.005 (3) | −0.015 (3) | −0.010 (3) |
C18 | 0.053 (4) | 0.041 (3) | 0.037 (3) | −0.009 (3) | 0.000 (3) | −0.010 (2) |
C19 | 0.035 (3) | 0.026 (3) | 0.035 (3) | −0.001 (2) | −0.002 (2) | −0.003 (2) |
Co1—N1 | 1.871 (5) | C7—H7B | 0.9700 |
Co1—N2 | 1.877 (5) | C7—H7C | 0.9700 |
Co1—N3 | 1.881 (5) | C8—H8A | 0.9700 |
Co1—N4 | 1.903 (5) | C8—H8B | 0.9700 |
Co1—C10 | 1.994 (5) | C8—H8C | 0.9700 |
Co1—N5 | 2.089 (4) | C9—C10 | 1.324 (7) |
O1—N1 | 1.360 (6) | C9—H9A | 1.02 (6) |
O2—N2 | 1.342 (6) | C9—H9B | 0.95 (5) |
O3—N3 | 1.349 (6) | C10—C11 | 1.482 (7) |
O3—H3O | 0.91 (9) | C11—C12 | 1.553 (6) |
O4—N4 | 1.330 (6) | C11—H11A | 0.9800 |
O4—H4O | 0.77 (5) | C11—H11B | 0.9800 |
N1—C1 | 1.303 (8) | C12—C13 | 1.516 (7) |
N2—C2 | 1.292 (7) | C12—H12A | 0.9800 |
N3—C3 | 1.297 (7) | C12—H12B | 0.9800 |
N4—C4 | 1.303 (8) | C13—C14 | 1.515 (7) |
N5—C15 | 1.338 (6) | C13—H13A | 0.9800 |
N5—C19 | 1.342 (6) | C13—H13B | 0.9800 |
C1—C2 | 1.458 (8) | C14—H14A | 0.9700 |
C1—C5 | 1.485 (8) | C14—H14B | 0.9700 |
C2—C6 | 1.488 (8) | C14—H14C | 0.9700 |
C3—C4 | 1.448 (10) | C15—C16 | 1.370 (7) |
C3—C7 | 1.503 (8) | C15—H15A | 0.9400 |
C4—C8 | 1.499 (9) | C16—C17 | 1.366 (8) |
C5—H5A | 0.9700 | C16—H16A | 0.9400 |
C5—H5B | 0.9700 | C17—C18 | 1.382 (8) |
C5—H5C | 0.9700 | C17—H17A | 0.9400 |
C6—H6A | 0.9700 | C18—C19 | 1.361 (7) |
C6—H6B | 0.9700 | C18—H18A | 0.9400 |
C6—H6C | 0.9700 | C19—H19A | 0.9400 |
C7—H7A | 0.9700 | ||
N1—Co1—N2 | 81.7 (2) | C3—C7—H7B | 109.5 |
N1—Co1—N3 | 178.4 (2) | H7A—C7—H7B | 109.5 |
N2—Co1—N3 | 98.31 (19) | C3—C7—H7C | 109.5 |
N1—Co1—N4 | 98.70 (19) | H7A—C7—H7C | 109.5 |
N2—Co1—N4 | 179.6 (2) | H7B—C7—H7C | 109.5 |
N3—Co1—N4 | 81.3 (2) | C4—C8—H8A | 109.5 |
N1—Co1—C10 | 89.7 (2) | C4—C8—H8B | 109.5 |
N2—Co1—C10 | 90.6 (2) | H8A—C8—H8B | 109.5 |
N3—Co1—C10 | 88.8 (2) | C4—C8—H8C | 109.5 |
N4—Co1—C10 | 89.5 (2) | H8A—C8—H8C | 109.5 |
N1—Co1—N5 | 89.82 (18) | H8B—C8—H8C | 109.5 |
N2—Co1—N5 | 89.40 (18) | C10—C9—H9A | 115 (3) |
N3—Co1—N5 | 91.74 (19) | C10—C9—H9B | 127 (3) |
N4—Co1—N5 | 90.50 (19) | H9A—C9—H9B | 119 (4) |
C10—Co1—N5 | 179.5 (2) | C9—C10—C11 | 123.2 (5) |
N3—O3—H3O | 103 (4) | C9—C10—Co1 | 119.3 (4) |
N4—O4—H4O | 102 (4) | C11—C10—Co1 | 117.5 (4) |
C1—N1—O1 | 120.9 (5) | C10—C11—C12 | 117.5 (4) |
C1—N1—Co1 | 116.9 (4) | C10—C11—H11A | 107.9 |
O1—N1—Co1 | 122.3 (4) | C12—C11—H11A | 107.9 |
C2—N2—O2 | 120.7 (5) | C10—C11—H11B | 107.9 |
C2—N2—Co1 | 116.3 (4) | C12—C11—H11B | 107.9 |
O2—N2—Co1 | 123.0 (4) | H11A—C11—H11B | 107.2 |
C3—N3—O3 | 119.1 (5) | C13—C12—C11 | 113.6 (5) |
C3—N3—Co1 | 117.1 (4) | C13—C12—H12A | 108.8 |
O3—N3—Co1 | 123.8 (4) | C11—C12—H12A | 108.8 |
C4—N4—O4 | 121.6 (5) | C13—C12—H12B | 108.8 |
C4—N4—Co1 | 115.4 (4) | C11—C12—H12B | 108.8 |
O4—N4—Co1 | 122.9 (4) | H12A—C12—H12B | 107.7 |
C15—N5—C19 | 117.3 (4) | C14—C13—C12 | 111.3 (5) |
C15—N5—Co1 | 121.7 (4) | C14—C13—H13A | 109.4 |
C19—N5—Co1 | 121.0 (3) | C12—C13—H13A | 109.4 |
N1—C1—C2 | 111.9 (5) | C14—C13—H13B | 109.4 |
N1—C1—C5 | 122.7 (6) | C12—C13—H13B | 109.4 |
C2—C1—C5 | 125.5 (6) | H13A—C13—H13B | 108.0 |
N2—C2—C1 | 113.2 (5) | C13—C14—H14A | 109.5 |
N2—C2—C6 | 124.0 (6) | C13—C14—H14B | 109.5 |
C1—C2—C6 | 122.8 (6) | H14A—C14—H14B | 109.5 |
N3—C3—C4 | 112.4 (5) | C13—C14—H14C | 109.5 |
N3—C3—C7 | 122.6 (6) | H14A—C14—H14C | 109.5 |
C4—C3—C7 | 125.0 (5) | H14B—C14—H14C | 109.5 |
N4—C4—C3 | 113.6 (5) | N5—C15—C16 | 123.1 (5) |
N4—C4—C8 | 122.5 (6) | N5—C15—H15A | 118.5 |
C3—C4—C8 | 123.9 (5) | C16—C15—H15A | 118.5 |
C1—C5—H5A | 109.5 | C17—C16—C15 | 119.2 (5) |
C1—C5—H5B | 109.5 | C17—C16—H16A | 120.4 |
H5A—C5—H5B | 109.5 | C15—C16—H16A | 120.4 |
C1—C5—H5C | 109.5 | C16—C17—C18 | 118.2 (5) |
H5A—C5—H5C | 109.5 | C16—C17—H17A | 120.9 |
H5B—C5—H5C | 109.5 | C18—C17—H17A | 120.9 |
C2—C6—H6A | 109.5 | C19—C18—C17 | 119.6 (5) |
C2—C6—H6B | 109.5 | C19—C18—H18A | 120.2 |
H6A—C6—H6B | 109.5 | C17—C18—H18A | 120.2 |
C2—C6—H6C | 109.5 | N5—C19—C18 | 122.6 (5) |
H6A—C6—H6C | 109.5 | N5—C19—H19A | 118.7 |
H6B—C6—H6C | 109.5 | C18—C19—H19A | 118.7 |
C3—C7—H7A | 109.5 | ||
N2—Co1—N1—C1 | 0.8 (4) | O1—N1—C1—C5 | −0.8 (8) |
N4—Co1—N1—C1 | −179.3 (4) | Co1—N1—C1—C5 | 179.6 (4) |
C10—Co1—N1—C1 | −89.9 (4) | O2—N2—C2—C1 | −177.7 (4) |
N5—Co1—N1—C1 | 90.2 (4) | Co1—N2—C2—C1 | 1.3 (6) |
N2—Co1—N1—O1 | −178.8 (4) | O2—N2—C2—C6 | 0.6 (7) |
N4—Co1—N1—O1 | 1.1 (4) | Co1—N2—C2—C6 | 179.6 (4) |
C10—Co1—N1—O1 | 90.5 (4) | N1—C1—C2—N2 | −0.7 (7) |
N5—Co1—N1—O1 | −89.4 (4) | C5—C1—C2—N2 | 179.4 (5) |
N1—Co1—N2—C2 | −1.2 (4) | N1—C1—C2—C6 | −179.0 (5) |
N3—Co1—N2—C2 | 177.2 (4) | C5—C1—C2—C6 | 1.1 (8) |
C10—Co1—N2—C2 | 88.4 (4) | O3—N3—C3—C4 | 178.5 (4) |
N5—Co1—N2—C2 | −91.1 (4) | Co1—N3—C3—C4 | −3.8 (6) |
N1—Co1—N2—O2 | 177.8 (4) | O3—N3—C3—C7 | −2.4 (8) |
N3—Co1—N2—O2 | −3.8 (4) | Co1—N3—C3—C7 | 175.2 (4) |
C10—Co1—N2—O2 | −92.6 (4) | O4—N4—C4—C3 | −179.1 (5) |
N5—Co1—N2—O2 | 87.9 (4) | Co1—N4—C4—C3 | 2.9 (6) |
N2—Co1—N3—C3 | −175.8 (4) | O4—N4—C4—C8 | 0.4 (8) |
N4—Co1—N3—C3 | 4.3 (4) | Co1—N4—C4—C8 | −177.6 (4) |
C10—Co1—N3—C3 | −85.4 (4) | N3—C3—C4—N4 | 0.5 (6) |
N5—Co1—N3—C3 | 94.5 (4) | C7—C3—C4—N4 | −178.5 (6) |
N2—Co1—N3—O3 | 1.7 (4) | N3—C3—C4—C8 | −179.0 (5) |
N4—Co1—N3—O3 | −178.2 (4) | C7—C3—C4—C8 | 2.0 (8) |
C10—Co1—N3—O3 | 92.2 (4) | N1—Co1—C10—C9 | −50.7 (5) |
N5—Co1—N3—O3 | −87.9 (4) | N2—Co1—C10—C9 | −132.4 (5) |
N1—Co1—N4—C4 | 174.5 (4) | N3—Co1—C10—C9 | 129.3 (5) |
N3—Co1—N4—C4 | −3.9 (4) | N4—Co1—C10—C9 | 48.0 (5) |
C10—Co1—N4—C4 | 84.9 (4) | N1—Co1—C10—C11 | 128.1 (4) |
N5—Co1—N4—C4 | −95.6 (4) | N2—Co1—C10—C11 | 46.4 (4) |
N1—Co1—N4—O4 | −3.5 (5) | N3—Co1—C10—C11 | −51.9 (4) |
N3—Co1—N4—O4 | 178.1 (4) | N4—Co1—C10—C11 | −133.2 (4) |
C10—Co1—N4—O4 | −93.0 (4) | C9—C10—C11—C12 | −6.3 (9) |
N5—Co1—N4—O4 | 86.4 (4) | Co1—C10—C11—C12 | 174.9 (4) |
N1—Co1—N5—C15 | 43.4 (5) | C10—C11—C12—C13 | −75.9 (7) |
N2—Co1—N5—C15 | 125.1 (5) | C11—C12—C13—C14 | 175.2 (5) |
N3—Co1—N5—C15 | −136.6 (5) | C19—N5—C15—C16 | −0.3 (9) |
N4—Co1—N5—C15 | −55.3 (5) | Co1—N5—C15—C16 | −177.0 (5) |
N1—Co1—N5—C19 | −133.1 (5) | N5—C15—C16—C17 | 0.9 (10) |
N2—Co1—N5—C19 | −51.4 (5) | C15—C16—C17—C18 | −1.0 (10) |
N3—Co1—N5—C19 | 46.9 (5) | C16—C17—C18—C19 | 0.6 (10) |
N4—Co1—N5—C19 | 128.2 (5) | C15—N5—C19—C18 | −0.1 (9) |
O1—N1—C1—C2 | 179.3 (4) | Co1—N5—C19—C18 | 176.6 (4) |
Co1—N1—C1—C2 | −0.3 (6) | C17—C18—C19—N5 | −0.1 (10) |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3O···O2 | 0.91 (9) | 1.59 (9) | 2.497 (7) | 170 (7) |
O4—H4O···O1 | 0.77 (5) | 1.73 (5) | 2.487 (6) | 172 (6) |
Experimental details
Crystal data | |
Chemical formula | [Co(C6H11)(C4H7N2O2)2(C5H5N)] |
Mr | 451.41 |
Crystal system, space group | Monoclinic, Pn |
Temperature (K) | 228 |
a, b, c (Å) | 8.268 (3), 11.757 (3), 11.0253 (19) |
β (°) | 93.721 (18) |
V (Å3) | 1069.5 (4) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.84 |
Crystal size (mm) | 0.45 × 0.24 × 0.18 |
Data collection | |
Diffractometer | Bruker P4 diffractometer |
Absorption correction | ψ-scan North et al, 1968 |
Tmin, Tmax | 0.151, 0.187 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3254, 2971, 2660 |
Rint | 0.034 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.106, 1.05 |
No. of reflections | 2971 |
No. of parameters | 278 |
No. of restraints | 2 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.65, −0.24 |
Absolute structure | Flack (1983) |
Absolute structure parameter | 0.09 (2) |
Computer programs: XSCANS (Siemens, 1996), XSCANS, Bruker SHELXTL-NT (Bruker, 2001), Bruker SHELXTL-NT.
Co1—N1 | 1.871 (5) | N1—C1 | 1.303 (8) |
Co1—N2 | 1.877 (5) | N2—C2 | 1.292 (7) |
Co1—N3 | 1.881 (5) | N3—C3 | 1.297 (7) |
Co1—N4 | 1.903 (5) | N4—C4 | 1.303 (8) |
Co1—C10 | 1.994 (5) | N5—C15 | 1.338 (6) |
Co1—N5 | 2.089 (4) | N5—C19 | 1.342 (6) |
O1—N1 | 1.360 (6) | C1—C2 | 1.458 (8) |
O2—N2 | 1.342 (6) | C3—C4 | 1.448 (10) |
O3—N3 | 1.349 (6) | C9—C10 | 1.324 (7) |
O4—N4 | 1.330 (6) | C10—C11 | 1.482 (7) |
N1—Co1—N2 | 81.7 (2) | N4—Co1—C10 | 89.5 (2) |
N1—Co1—N3 | 178.4 (2) | N1—Co1—N5 | 89.82 (18) |
N2—Co1—N3 | 98.31 (19) | N2—Co1—N5 | 89.40 (18) |
N1—Co1—N4 | 98.70 (19) | N3—Co1—N5 | 91.74 (19) |
N2—Co1—N4 | 179.6 (2) | N4—Co1—N5 | 90.50 (19) |
N3—Co1—N4 | 81.3 (2) | C10—Co1—N5 | 179.5 (2) |
N1—Co1—C10 | 89.7 (2) | C9—C10—C11 | 123.2 (5) |
N2—Co1—C10 | 90.6 (2) | C9—C10—Co1 | 119.3 (4) |
N3—Co1—C10 | 88.8 (2) | C11—C10—Co1 | 117.5 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3O···O2 | 0.91 (9) | 1.59 (9) | 2.497 (7) | 170 (7) |
O4—H4O···O1 | 0.77 (5) | 1.73 (5) | 2.487 (6) | 172 (6) |
We have been interested in the preparation of cobaloxime complexes [cobaloxime is (pyridine)(dimethylglyoxime)2cobalt] that contain cobalt-sp2 carbon bonds and the use of these complexes in cycloaddition chemistry (Welker, 2001). In 2000, we reported a new method for the preparation of cobalt-sp2 carbon bonds, which involved a zinc-mediated coupling of alkenyl halides and trifluoromethanesulfonates, (II), to (py)2(dmg)2Co (Pickin & Welker, 2000). One of the coupling products prepared, a 2-cobaloxime-substituted 1-hexene complex, (III), isomerized readily to (E)-2-cobaloxime-2-hexene, (IV). The 2-cobaloxime 1-hexenyl complex (III) has now been crystallized at low temperature and its structure is reported here.
The molecular structure of (III) is depicted in Fig. 1, and selected geometric parameters are given in Table 1. The Co atom in III is coordinated in a slightly distorted octahedral geometry. The Co—N bond distances in the equatorial plane (Co—N1, Co—N2, Co—N3 and Co—N4) are 1.871 (5), 1.877 (5), 1.881 (5) and 1.903 (5) Å, resepctively. The Co—N5 (pyridine nitrogen) bond length is 2.089 (4) Å and the Co—C10 distance is 1.994 (5) Å. The Co atom and atoms N1–N4 are coplanar within 0.016 Å. The nearly coplanar Co1/C9/C10/C11/C12 (to within 0.05 Å) and Co1/N5/C15/C16/ C17/C18/C19 (to within 0.03 Å) groups are nearly parallel (5.2°) and are oriented so that they bisect the N4—Co—N1 and N2—Co—N3 angles. This arrangement minimizes the interligand steric interaction of the axial ligands with the dimethylglyoximes. The Co—C10 bond [1.994 (5) Å] falls in the range of other Cosp2–C bond lengths that we have reported previously for cobaloxime dienyl complexes [1.954 (15)–2.019 (6) Å; Stokes et al., 1995; Wright, et al., 1994]. This bond length is significantly longer than those reported previously for cobaloxime ethenyl complexes [1.945 (5)–1.953 (3) Å; McCauley et al., 2002) but comparable to Cosp2 carbon bond lengths in cobaloxime complexes containing longer carbon chains in the alkenyl fragment [1.971 (13), 1.972 (7) and 1.976 (4) Å; Stolter et al., 1975; Adams et al., 1998; Adams et al., 1997). Previously reported Cosp3—C bond lengths in cobaloxime complexes range from 1.998 (5) Å for the cobaloxime methyl complex to 2.085 (3) Å for the isopropyl complex (Brescani-Pahor et al., 1985). The C9═C10 double bond in the hexenyl ligand [1.324 (7) Å] is largely unaffected by the presence of the cobaloxime, and this observation has also been true of the other cobaloxime- substituted alkenyl complexes referenced above. The Co—C10—C9 and Co—C10—C11 bond angles are 119.3 (4) and 117.5 (4)°, respectively. Most Co—CAsp2—CBsp2 bond angles reported previously have been larger than 120°, but we have reported two other examples of cobaloxime alkenyl and dienyl complexes in which these angles were 118.3 (3)° and 116.7 (5)° (Adams et al., 1997; Stokes et al., 1995). Intramolecular hydrogen-bonding interactions involving equatorial dimethylglyoximate ligands are described in Table 2. The values reported here agree with corresponding values reported for 200 compounds with 269 relevant bonds in the Cambridge Structural Database (Allen, 2002), with average O···O contacts and O—H···O angles of 2.488 Å and 168.2°, respectively.
The cobaloxime alkenyl complex (III), which contains a terminal alkene, underwent facile double-bond isomerization upon attempted silica chromatography or simply upon standing in CDCl3. The rate constant for isomerization was determined by analysis of the appearance of the alkenyl methyl signal, and this analysis was carried out for several half lives. A rate constant of 3.9 x 10−2 min−1 (R = 0.9707) with a half life of 18 min was calculated. The alkenyl complex to which (III) isomerized was demonstrated to contain the E alkene geometry shown in (IV), on the basis of the observation of a strong nOe from the alkenyl proton to the dimethylglyoxime ligand methyls and the absence of a nOe from those same ligand methyl groups to the methyl or methylene protons α to the alkene in the hexenyl ligand.