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In the title compound, C9H15N5O3, in which the mol­ecules exhibit orientational disorder, the mol­ecules of the major component are linked by paired N-H...O hydrogen bonds [H...O = 2.37 and 2.39 Å, N...O = 2.974 (3) and 3.011 (3) Å, and N-H...O = 126 and 128°] to form a C(8)C(8)[R{_2^2}(6)] chain of rings along [010]. The minor component (6.5% of the mol­ecules) forms a similar chain running in the opposite direction.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270102020991/sk1600sup1.cif
Contains datablocks global, I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108270102020991/sk1600Isup2.hkl
Contains datablock I

CCDC reference: 204043

Comment top

An important mode of supramolecular aggregation in 4-nitroanilines is based on the formation of N—H···O hydrogen bonds, with each molecule acting as both a double donor and a double acceptor in these bonds. The resulting supramolecular structures can be two-dimensional (Tonogaki et al., 1993; Glidewell et al., 2002) or three-dimensional (Ferguson et al., 2001). An alternative aggregation mode can occur when there are bulky substituents present, which sometimes force an alternative one-dimensional aggregation mode, in which the molecules are linked by paired N—H···O hydrogen bonds to form an R22(6) (Bernstein et al., 1995) motif (McWilliam et al., 2001; Glidewell et al., 2002).

Continuing our study (Glidewell et al., 2003) of 2-amino-5-nitropyrimidines, which are closely analogous to 4-nitroanilines but which also offer the possibility that intermolecular N—H···N hydrogen bonds might be in competition with N—H···O hydrogen bonds, we report here the molecular and supramolecular structure of 2-amino-4-butylamino-6-methoxy-5-nitropyrimidine, (I). \sch

The molecules of (I), which lie in general positions, exhibit orientational disorder. The two components, whose site occupancy factors are 0.935 and 0.065, are related by an apparent rotation of 180° approximately around the N4···O6 line (Fig. 1). Within the molecules of the major component, the bond lengths (Table 1) show clear evidence of extensive bond fixation consequent upon the polarization of the molecular-electronic structure. Thus, the exocyclic bonds C2—N2 and C5—N5 are both very short for their types; the mean literature values for bonds of these types are 1.355 and 1.468 Å, respectively (Allen et al., 1987). The nitro group is essentially coplanar with the pyrimidine ring (Table 1), and the N—O distances are both longer than the mean literature value of 1.217 Å. It is noteworthy that the C2—N3 bond is shorter than C2—N1, and that N1—C6 is shorter than N3—C4, while N5—O52 is shorter than N5—O51. These observations taken together indicate that the polarized forms, (Ia), (Ib) and (Ic), are all significant contributors to the overall electronic structure.

The nature of the hydrogen bonding in (I) means that the supramolecular structures of the major and minor components are essentially the same, differing only in the direction of the chain formation (Table 2), and hence we discuss here only the major form. There is an intramolecular N—H···O hydrogen bond involving atoms N4 and O51, typical of those found in 2-nitroanilines (Dhaneshwar et al., 1978; Ellena et al., 1999; Cannon et al., 2001), but the principal interest in (I) lies in the intermolecular hydrogen bonding. The amino atom N2 in the molecule at (x, y, z) acts as a hydrogen-bond donor, via atoms H11 and H22, respectively, to atoms O51 and O52 in the molecule at (x, 1 + y, z), so generating a C(8) C(8)[R22(6)] chain of rings (Bernstein et al., 1995) running parallel to the [010] direction (Fig. 2). The R22(6) ring is effectively planar, with a sum of internal angles of 718°. It is notable that the supramolecular aggregation in (I) involves only N—H···O hydrogen bonds, whereas in the analogous 2-amino-4,6-dimethoxy-5-nitropyrimidine (Glidewell et al., 2003), both N—H···O and N—H···N hydrogen bonds contribute to the supramolecular structure.

Eight chains of rings pass through each unit cell of (I), but there are neither hydrogen bonds nor aromatic ππ stacking interactions between adjacent chains, so that the supramolecular structure defined by the direction-specific interactions is just one-dimensional. The total number of hydrogen bonds within the structure is maximized if the orientation of the molecules is fully correlated within a given chain. There is no necessary correlation between the molecular orientations in different chains, and chains containing the minor orientation are thus likely to be randomly distributed throughout the structure.

In the previously observed examples of such a chain of rings, the chains in the triclinic polymorph of 2-iodo-4-nitroaniline are linked into sheets by means of a two-centre iodo···nitro interaction (McWilliam et al., 2002), and in 2-trifluoromethyl-4-nitroaniline, a single C—H···O hydrogen bond links the molecules into a ladder generated by a 21 screw axis (Glidewell et al., 2002). It seems probable that direction-specific interactions between the chains in (I) are prevented by the presence of the N-butyl substituent which, in both components, adopts the usual all-trans chain-extended conformation (Table 1).

Experimental top

A sample of 2-amino-4-butylamino-6-methoxy-5-nitrosopyrimidine (Marchal, 2001) Is a clause missing here? and then converted into (I) by oxidation using 3-chloroperoxobenzoic acid (1.1 molar equivalents) in acetonitrile solution. After recrystallization from ethyl acetate, (I) had a melting point of 378 K. Spectroscopic analysis: 1H NMR (δ, DMSO-d6, p.p.m.): 0.90 (t, 3H, C—CH3, J = 7.41 Hz), 1.32 (m, 2H, CH2), 1.55 (m, 2H, CH2), 3.45 (m, 2H, CH2), 3.88 (s, 3H, O—CH3), 7.37 (bs, 2H, NH2, exchanges with H2O), 8.84 (t, 1H, NH, J = 5.49 Hz); 13C NMR (δ, DMSO-d6, p.p.m.): 13.6, 19.5, 30.7, 54.2, 109.2, 157.9, 160.6, 165.3. Crystals of (I) suitable for single-crystal X-ray diffraction were grown by slow evaporation of a solution in water-ethanol-acetonitrile (1:1:1 v/v).

Refinement top

The systematic absences permitted Cc and C2/c as possible space groups; C2/c was selected, and confirmed by the successful structure analysis. It was apparent at an early stage that the structure contained a small proportion of molecules adopting an alternative orientation. The bond distances in the minor component were constrained using DFIX commands, and the non-H atoms were assigned a common isotropic displacement parameter. Refinement of the site occupancy factors for the two components, constrained to sum to unity, gave values of 0.912 (4) and 0.088 (4) for the major and minor components, respectively. However, in these circumstances, the common Uiso for the minor component was more than double the mean value of the Ueq values for the major component. Refinements were then carried out with a series of fixed values for the site occupancy factors, still constrained to sum to unity. The most satisfactory outcome, in terms of the values of Uiso and the mean Ueq for the two components, was achieved when the occupancies were 0.935 and 0.065, and accordingly the occupancies were thereafter fixed at these values. H atoms were treated as riding, with C—H distances of 0.98 (CH3) and 0.99 Å (CH2), and N—H distances of 0.88 Å.

Computing details top

Data collection: KappaCCD Server Software (Nonius, 1997); cell refinement: DENZO-SMN (Otwinowski & Minor, 1997); data reduction: DENZO-SMN; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2002); software used to prepare material for publication: SHELXL97 and PRPKAPPA (Ferguson, 1999).

Figures top
[Figure 1] Fig. 1. The molecular components of compound (I), showing the atom-labelling scheme and the relative orientation of the two components; full lines indicate the major component, broken lines the minor component. For the sake of clarity, H atoms have been omitted. Displacement parameters are drawn at the 30% probability level. For the minor component, non-H atoms were assigned a common isotropic displacement parameter.
[Figure 2] Fig. 2. Part of the crystal structure of (I), showing the formation of a chain of rings along [010]. For the sake of clarity, only the major orientation is shown. The atoms marked with an asterisk (*) or hash sign (#) are at the symmetry positions (x, 1 + y, z) and (x, y − 1, z), respectively.
2-Amino-4-butylamino-6-methoxy-5-nitropyrimidine top
Crystal data top
C9H15N5O3F(000) = 1024
Mr = 241.26Dx = 1.442 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2482 reflections
a = 20.5825 (13) Åθ = 3.2–27.4°
b = 8.8102 (4) ŵ = 0.11 mm1
c = 13.0289 (11) ÅT = 120 K
β = 109.810 (3)°Plate, colourless
V = 2222.8 (3) Å30.22 × 0.08 × 0.02 mm
Z = 8
Data collection top
Nonius KappaCCD area-detector
diffractometer
2482 independent reflections
Radiation source: fine-focus sealed X-ray tube1151 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.124
ϕ scans, and ω scans with κ offsetsθmax = 27.4°, θmin = 3.2°
Absorption correction: multi-scan
(DENZO-SMN; Otwinowski & Minor, 1997)
h = 2626
Tmin = 0.911, Tmax = 0.998k = 1011
16040 measured reflectionsl = 1616
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.063Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.163H-atom parameters constrained
S = 0.94 w = 1/[σ2(Fo2) + (0.0759P)2]
where P = (Fo2 + 2Fc2)/3
2482 reflections(Δ/σ)max < 0.001
211 parametersΔρmax = 0.32 e Å3
26 restraintsΔρmin = 0.31 e Å3
Crystal data top
C9H15N5O3V = 2222.8 (3) Å3
Mr = 241.26Z = 8
Monoclinic, C2/cMo Kα radiation
a = 20.5825 (13) ŵ = 0.11 mm1
b = 8.8102 (4) ÅT = 120 K
c = 13.0289 (11) Å0.22 × 0.08 × 0.02 mm
β = 109.810 (3)°
Data collection top
Nonius KappaCCD area-detector
diffractometer
2482 independent reflections
Absorption correction: multi-scan
(DENZO-SMN; Otwinowski & Minor, 1997)
1151 reflections with I > 2σ(I)
Tmin = 0.911, Tmax = 0.998Rint = 0.124
16040 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.06326 restraints
wR(F2) = 0.163H-atom parameters constrained
S = 0.94Δρmax = 0.32 e Å3
2482 reflectionsΔρmin = 0.31 e Å3
211 parameters
Special details top

Experimental. The program DENZO-SMN (Otwinowski & Minor, 1997) uses a scaling algorithm [Fox, G·C. & Holmes, K·C. (1966). Acta Cryst. 20, 886–891] which effectively corrects for absorption effects. High-redundancy data were used in the scaling program, hence the `multi-scan' code word was used.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
N10.31025 (15)0.4567 (3)0.0483 (2)0.0213 (8)0.935
C20.34067 (15)0.5240 (3)0.0504 (2)0.0201 (7)0.935
N20.33616 (13)0.6742 (3)0.0514 (2)0.0281 (7)0.935
N30.37390 (13)0.4557 (3)0.14522 (19)0.0203 (7)0.935
C40.37663 (14)0.3035 (3)0.1449 (2)0.0198 (7)0.935
N40.4105 (2)0.2373 (3)0.2402 (2)0.0209 (7)0.935
C410.44135 (16)0.3238 (3)0.3408 (2)0.0238 (7)0.935
C420.47305 (17)0.2170 (3)0.4360 (2)0.0222 (8)0.935
C430.50891 (16)0.3031 (3)0.5407 (2)0.0236 (7)0.935
C440.54224 (19)0.2029 (4)0.6395 (3)0.0321 (8)0.935
N50.34632 (13)0.0596 (3)0.0420 (2)0.0224 (6)0.935
O510.37716 (12)0.0112 (2)0.12942 (17)0.0316 (6)0.935
O520.31783 (12)0.0102 (2)0.04284 (16)0.0300 (6)0.935
C50.34477 (15)0.2192 (3)0.0452 (2)0.0183 (7)0.935
C60.31325 (14)0.3075 (3)0.0496 (2)0.0195 (7)0.935
C610.25712 (17)0.3330 (4)0.2406 (2)0.0323 (8)0.935
O60.28453 (14)0.2378 (3)0.14489 (17)0.0242 (7)0.935
N1A0.310 (2)0.0532 (19)0.0515 (14)0.026 (3)*0.065
C2A0.336 (2)0.0156 (17)0.0480 (15)0.026 (3)*0.065
N2A0.3339 (16)0.1667 (16)0.0456 (19)0.026 (3)*0.065
N3A0.372 (2)0.0514 (19)0.1435 (14)0.026 (3)*0.065
N4A0.405 (4)0.271 (3)0.238 (2)0.026 (3)*0.065
C4A0.376 (2)0.2028 (19)0.1414 (15)0.026 (3)*0.065
C41A0.438 (2)0.185 (3)0.3385 (15)0.026 (3)*0.065
C42A0.479 (3)0.279 (4)0.437 (2)0.026 (3)*0.065
C43A0.504 (2)0.181 (5)0.539 (3)0.026 (3)*0.065
C44A0.539 (3)0.286 (6)0.634 (3)0.026 (3)*0.065
C5A0.347 (3)0.2896 (16)0.0455 (18)0.026 (3)*0.065
O51A0.3776 (18)0.525 (4)0.134 (2)0.026 (3)*0.065
O52A0.318 (2)0.513 (5)0.038 (3)0.026 (3)*0.065
N5A0.347 (2)0.4477 (17)0.048 (2)0.026 (3)*0.065
C6A0.313 (2)0.1991 (19)0.0559 (14)0.026 (3)*0.065
O6A0.297 (3)0.266 (3)0.1520 (17)0.026 (3)*0.065
C61A0.259 (2)0.175 (4)0.2441 (15)0.026 (3)*0.065
H210.35460.72450.11280.034*0.935
H220.31470.72360.00940.034*0.935
H40.41440.13770.24260.025*0.935
H41A0.40550.38680.35510.029*0.935
H41B0.47740.39240.33270.029*0.935
H42A0.43640.15210.44600.027*0.935
H42B0.50690.15000.41940.027*0.935
H43A0.47480.37000.55630.028*0.935
H43B0.54490.36880.52940.028*0.935
H44A0.50720.13670.65120.048*0.935
H44B0.56280.26660.70400.048*0.935
H44C0.57830.14070.62690.048*0.935
H61A0.22100.39900.23190.048*0.935
H61B0.23750.26890.30520.048*0.935
H61C0.29430.39540.24940.048*0.935
H21A0.35550.21910.10490.032*0.065
H22A0.31090.21420.01530.032*0.065
H4A0.40470.37030.24180.032*0.065
H41C0.46890.10830.32410.032*0.065
H41D0.40150.12950.35720.032*0.065
H42C0.51980.32360.42340.032*0.065
H42D0.45040.36280.44770.032*0.065
H43C0.53620.10250.53160.032*0.065
H43D0.46370.12990.55020.032*0.065
H44D0.57480.34500.61730.040*0.065
H44E0.56020.22620.69990.040*0.065
H44F0.50490.35600.64500.040*0.065
H61D0.28860.09470.25560.040*0.065
H61E0.24220.23880.30940.040*0.065
H61F0.21930.12890.23000.040*0.065
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0222 (16)0.022 (2)0.0177 (14)0.0008 (13)0.0048 (12)0.0012 (12)
C20.0167 (17)0.0202 (18)0.0218 (17)0.0002 (13)0.0043 (13)0.0019 (14)
N20.0355 (16)0.0179 (15)0.0241 (15)0.0005 (11)0.0010 (12)0.0006 (10)
N30.0221 (15)0.0156 (15)0.0194 (15)0.0015 (11)0.0022 (11)0.0010 (11)
C40.0157 (16)0.0252 (19)0.0165 (17)0.0033 (12)0.0027 (13)0.0031 (11)
N40.0263 (17)0.0118 (14)0.0186 (13)0.0011 (16)0.0002 (10)0.0012 (11)
C410.0307 (19)0.0176 (17)0.0173 (17)0.0027 (12)0.0006 (14)0.0031 (11)
C420.0220 (18)0.0210 (19)0.0225 (17)0.0034 (14)0.0059 (13)0.0003 (12)
C430.0231 (18)0.0264 (18)0.0194 (17)0.0013 (13)0.0046 (14)0.0038 (13)
C440.041 (2)0.0314 (19)0.0190 (17)0.0012 (16)0.0042 (15)0.0024 (14)
N50.0229 (14)0.0220 (14)0.0192 (14)0.0004 (11)0.0029 (11)0.0011 (12)
O510.0436 (15)0.0182 (13)0.0238 (13)0.0042 (11)0.0004 (11)0.0012 (9)
O520.0405 (15)0.0233 (13)0.0180 (12)0.0028 (11)0.0007 (10)0.0073 (9)
C50.0205 (16)0.0132 (16)0.0218 (16)0.0003 (14)0.0082 (13)0.0019 (12)
C60.0173 (17)0.0227 (19)0.0175 (18)0.0021 (12)0.0045 (14)0.0037 (11)
C610.040 (2)0.0343 (19)0.0169 (18)0.0014 (14)0.0018 (15)0.0052 (13)
O60.0263 (17)0.0297 (14)0.0146 (11)0.0032 (10)0.0044 (9)0.0008 (10)
Geometric parameters (Å, º) top
N1—C21.361 (4)N1A—C6A1.290 (5)
C2—N31.335 (4)N1A—C2A1.365 (5)
N3—C41.342 (4)C2A—N2A1.333 (5)
C4—C51.446 (4)C2A—N3A1.349 (5)
C5—C61.418 (4)N2A—H21A0.88
C6—N11.316 (4)N2A—H22A0.88
C2—N21.327 (4)N3A—C4A1.337 (5)
C4—N41.335 (4)N4A—C4A1.343 (5)
C5—N51.407 (4)N4A—C41A1.458 (5)
N5—O511.265 (3)N4A—H4A0.88
N5—O521.227 (3)C4A—C5A1.414 (10)
C6—O61.330 (4)C41A—C42A1.520 (5)
N2—H210.88C41A—H41C0.99
N2—H220.88C41A—H41D0.99
N4—C411.463 (4)C42A—C43A1.517 (5)
N4—H40.88C42A—H42C0.99
C41—C421.517 (4)C42A—H42D0.99
C41—H41A0.99C43A—C44A1.522 (5)
C41—H41B0.99C43A—H43C0.99
C42—C431.516 (4)C43A—H43D0.99
C42—H42A0.99C44A—H44D0.98
C42—H42B0.99C44A—H44E0.98
C43—C441.520 (4)C44A—H44F0.98
C43—H43A0.99C5A—N5A1.393 (5)
C43—H43B0.99C5A—C6A1.495 (10)
C44—H44A0.98O51A—N5A1.274 (5)
C44—H44B0.98O52A—N5A1.223 (5)
C44—H44C0.98C6A—O6A1.322 (5)
C61—O61.449 (4)O6A—C61A1.440 (5)
C61—H61A0.98C61A—H61D0.98
C61—H61B0.98C61A—H61E0.98
C61—H61C0.98C61A—H61F0.98
C6—N1—C2116.1 (3)H21A—N2A—H22A120.0
N2—C2—N3117.2 (3)C4A—N3A—C2A115.7 (5)
N2—C2—N1115.6 (3)C4A—N4A—C41A122.4 (7)
N3—C2—N1127.2 (3)C4A—N4A—H4A118.8
C2—N2—H21120.0C41A—N4A—H4A118.8
C2—N2—H22120.0N3A—C4A—N4A115.8 (6)
H21—N2—H22120.0N3A—C4A—C5A123.3 (5)
C2—N3—C4117.1 (3)N4A—C4A—C5A120.8 (9)
N4—C4—N3116.3 (3)N4A—C41A—C42A115 (2)
N4—C4—C5123.1 (3)N4A—C41A—H41C108.4
N3—C4—C5120.6 (3)C42A—C41A—H41C108.4
C4—N4—C41122.5 (3)N4A—C41A—H41D108.4
C4—N4—H4118.8C42A—C41A—H41D108.4
C41—N4—H4118.8H41C—C41A—H41D107.5
N4—C41—C42110.2 (3)C43A—C42A—C41A111 (2)
N4—C41—H41A109.6C43A—C42A—H42C109.5
C42—C41—H41A109.6C41A—C42A—H42C109.5
N4—C41—H41B109.6C43A—C42A—H42D109.5
C42—C41—H41B109.6C41A—C42A—H42D109.5
H41A—C41—H41B108.1H42C—C42A—H42D108.1
C43—C42—C41111.6 (2)C42A—C43A—C44A107 (3)
C43—C42—H42A109.3C42A—C43A—H43C110.3
C41—C42—H42A109.3C44A—C43A—H43C110.3
C43—C42—H42B109.3C42A—C43A—H43D110.3
C41—C42—H42B109.3C44A—C43A—H43D110.3
H42A—C42—H42B108.0H43C—C43A—H43D108.6
C42—C43—C44114.4 (3)C43A—C44A—H44D109.5
C42—C43—H43A108.7C43A—C44A—H44E109.5
C44—C43—H43A108.7H44D—C44A—H44E109.5
C42—C43—H43B108.7C43A—C44A—H44F109.5
C44—C43—H43B108.7H44D—C44A—H44F109.5
H43A—C43—H43B107.6H44E—C44A—H44F109.5
O52—N5—O51120.3 (3)N5A—C5A—C4A121.4 (17)
O52—N5—C5121.3 (3)N5A—C5A—C6A123.6 (17)
O51—N5—C5118.4 (3)C4A—C5A—C6A115.0 (4)
N5—C5—C6122.0 (3)O51A—N5A—O52A120 (3)
N5—C5—C4122.2 (3)O52A—N5A—C5A117 (3)
C6—C5—C4115.8 (2)O51A—N5A—C5A124 (3)
N1—C6—O6117.7 (3)N1A—C6A—O6A119.3 (7)
N1—C6—C5123.1 (3)N1A—C6A—C5A120.5 (5)
O6—C6—C5119.2 (3)O6A—C6A—C5A119.4 (13)
C6—O6—C61117.2 (3)C6A—O6A—C61A115.4 (10)
C6A—N1A—C2A118.4 (5)O6A—C61A—H61D109.5
N2A—C2A—N3A117.5 (8)O6A—C61A—H61E109.5
N2A—C2A—N1A115.0 (7)H61D—C61A—H61E109.5
N3A—C2A—N1A126.7 (6)O6A—C61A—H61F109.5
C2A—N2A—H21A120.0H61D—C61A—H61F109.5
C2A—N2A—H22A120.0H61E—C61A—H61F109.5
C6—N1—C2—N2178.7 (3)C6A—N1A—C2A—N2A177 (4)
C6—N1—C2—N31.0 (5)C6A—N1A—C2A—N3A7 (7)
N2—C2—N3—C4178.0 (3)N2A—C2A—N3A—C4A177 (4)
N1—C2—N3—C41.7 (5)N1A—C2A—N3A—C4A8 (7)
C2—N3—C4—N4179.5 (4)C2A—N3A—C4A—N4A173 (6)
C2—N3—C4—C50.1 (4)C2A—N3A—C4A—C5A3 (7)
N3—C4—N4—C411.8 (6)C41A—N4A—C4A—N3A6 (10)
C5—C4—N4—C41178.8 (4)C41A—N4A—C4A—C5A178 (6)
C4—N4—C41—C42177.3 (4)C4A—N4A—C41A—C42A170 (7)
N4—C41—C42—C43176.9 (3)N4A—C41A—C42A—C43A173 (5)
C41—C42—C43—C44179.7 (3)C41A—C42A—C43A—C44A175 (4)
C4—C5—N5—O510.5 (4)N3A—C4A—C5A—N5A175 (5)
C4—C5—N5—O52178.5 (3)N4A—C4A—C5A—N5A1 (8)
C6—C5—N5—O51178.0 (3)N3A—C4A—C5A—C6A2 (7)
C6—C5—N5—O523.0 (4)N4A—C4A—C5A—C6A178 (6)
N4—C4—C5—N51.0 (5)C4A—C5A—N5A—O51A6 (8)
N3—C4—C5—N5179.7 (3)C6A—C5A—N5A—O51A177 (5)
N4—C4—C5—C6177.6 (4)C4A—C5A—N5A—O52A177 (5)
N3—C4—C5—C61.8 (4)C6A—C5A—N5A—O52A0 (7)
C2—N1—C6—O6179.5 (3)C2A—N1A—C6A—O6A171 (5)
C2—N1—C6—C51.2 (4)C2A—N1A—C6A—C5A1 (6)
N5—C5—C6—N1178.9 (3)N5A—C5A—C6A—N1A174 (5)
C4—C5—C6—N12.5 (4)C4A—C5A—C6A—N1A3 (7)
N5—C5—C6—O60.4 (4)N5A—C5A—C6A—O6A16 (7)
C4—C5—C6—O6178.2 (3)C4A—C5A—C6A—O6A167 (4)
N1—C6—O6—C614.7 (4)N1A—C6A—O6A—C61A17 (7)
C5—C6—O6—C61175.9 (3)C5A—C6A—O6A—C61A173 (5)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N4—H4···O510.881.932.583 (3)130
N2—H21···O51i0.882.372.974 (3)126
N2—H22···O52i0.882.393.011 (3)128
N4A—H4A···O51A0.881.902.56 (4)133
N2A—H21A···O51Aii0.882.313.00 (4)132
N2A—H22A···O52Aii0.882.433.02 (4)123
Symmetry codes: (i) x, y+1, z; (ii) x, y1, z.

Experimental details

Crystal data
Chemical formulaC9H15N5O3
Mr241.26
Crystal system, space groupMonoclinic, C2/c
Temperature (K)120
a, b, c (Å)20.5825 (13), 8.8102 (4), 13.0289 (11)
β (°) 109.810 (3)
V3)2222.8 (3)
Z8
Radiation typeMo Kα
µ (mm1)0.11
Crystal size (mm)0.22 × 0.08 × 0.02
Data collection
DiffractometerNonius KappaCCD area-detector
diffractometer
Absorption correctionMulti-scan
(DENZO-SMN; Otwinowski & Minor, 1997)
Tmin, Tmax0.911, 0.998
No. of measured, independent and
observed [I > 2σ(I)] reflections
16040, 2482, 1151
Rint0.124
(sin θ/λ)max1)0.647
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.063, 0.163, 0.94
No. of reflections2482
No. of parameters211
No. of restraints26
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å3)0.32, 0.31

Computer programs: KappaCCD Server Software (Nonius, 1997), DENZO-SMN (Otwinowski & Minor, 1997), DENZO-SMN, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), PLATON (Spek, 2002), SHELXL97 and PRPKAPPA (Ferguson, 1999).

Selected geometric parameters (Å, º) top
N1—C21.361 (4)C2—N21.327 (4)
C2—N31.335 (4)C4—N41.335 (4)
N3—C41.342 (4)C5—N51.407 (4)
C4—C51.446 (4)N5—O511.265 (3)
C5—C61.418 (4)N5—O521.227 (3)
C6—N11.316 (4)C6—O61.330 (4)
N4—C41—C42—C43176.9 (3)N4A—C41A—C42A—C43A173 (5)
C41—C42—C43—C44179.7 (3)C41A—C42A—C43A—C44A175 (4)
C4—C5—N5—O510.5 (4)C4A—C5A—N5A—O51A6 (8)
C4—C5—N5—O52178.5 (3)C4A—C5A—N5A—O52A177 (5)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N4—H4···O510.881.932.583 (3)130
N2—H21···O51i0.882.372.974 (3)126
N2—H22···O52i0.882.393.011 (3)128
N4A—H4A···O51A0.881.902.56 (4)133
N2A—H21A···O51Aii0.882.313.00 (4)132
N2A—H22A···O52Aii0.882.433.02 (4)123
Symmetry codes: (i) x, y+1, z; (ii) x, y1, z.
 

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