research papers
In order to gain a better understanding of how to improve the quality of small-molecule single-crystal X-ray diffraction data achievable in a finite time, a study was carried out to investigate the effect of varying the multiplicity, acquisition time, detector binning, maximum resolution and completeness. The results suggest that, unless there are strong arguments for a different strategy, a good routine procedure might be to optimize the conditions necessary to get the best data from single scans, and then choose a multiplicity of observations (MoO) to utilize the available time fully. Different strategies may be required if the crystal is highly absorbing, is larger than the incident beam, is enclosed in a capillary tube or is unusual in some other way. The signal-to-noise ratio should be used with care, as collecting data for longer or at higher multiplicity appears to give a systematic underestimate of the intensity uncertainties. Further, the results demonstrate that including poor-quality data in a refinement may degrade the result and, in the general case, the accidental omission of reflections has a very small impact on the refinement as long as they are omitted at random. Systematic omission of reflections needs a convincing procedural justification.
Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S2052520619006681/ps5073sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S2052520619006681/ps5073Isup2.hkl |
CCDC reference: 1870078
Computing details top
Data collection: SuperNova, (Oxford Diffraction, 2010); cell refinement: CrysAlis PRO (Rigaku Oxford Diffraction, 2017); data reduction: CrysAlis PRO (Rigaku Oxford Diffraction, 2017); program(s) used to solve structure: Superflip (Palatinus & Chapuis, 2007); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003); molecular graphics: CAMERON (Watkin et al., 1996); software used to prepare material for publication: CRYSTALS (Betteridge et al., 2003).
(I) top
Crystal data top
C24H16 | F(000) = 640 |
Mr = 304.39 | Dx = 1.216 Mg m−3 |
Monoclinic, P21/n | Melting point: not measured K |
Hall symbol: -P 2yn | Cu Kα radiation, λ = 1.54184 Å |
a = 9.8367 (5) Å | Cell parameters from 1470 reflections |
b = 17.1456 (8) Å | θ = 5–76° |
c = 9.8764 (4) Å | µ = 0.52 mm−1 |
β = 93.730 (4)° | T = 290 K |
V = 1662.19 (13) Å3 | Lath, clear_pale_colourless |
Z = 4 | 0.25 × 0.12 × 0.03 mm |
Data collection top
Oxford Diffraction SuperNova diffractometer | 2035 reflections with I > 2.0σ(I) |
Focussing mirrors monochromator | Rint = 0.057 |
ω scans | θmax = 77.0°, θmin = 5.2° |
Absorption correction: multi-scan CrysAlisPro (Rigaku Oxford Diffraction, 2017) | h = −12→12 |
Tmin = 0.88, Tmax = 1.00 | k = −21→21 |
13736 measured reflections | l = −12→7 |
3489 independent reflections |
Refinement top
Refinement on F2 | Primary atom site location: other |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.059 | H-atom parameters constrained |
wR(F2) = 0.173 | Method = Modified Sheldrick
w = 1/[σ2(F2) + ( 0.06P)2 + 0.29P]
, where P = (max(Fo2,0) + 2Fc2)/3 |
S = 1.02 | (Δ/σ)max = 0.0002 |
3488 reflections | Δρmax = 0.30 e Å−3 |
217 parameters | Δρmin = −0.33 e Å−3 |
0 restraints |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
x | y | z | Uiso*/Ueq | ||
C241 | 0.4227 (3) | 0.70696 (15) | 0.4119 (2) | 0.0531 | |
C242 | 0.3843 (3) | 0.64034 (14) | 0.3202 (2) | 0.0510 | |
C243 | 0.3012 (3) | 0.58001 (14) | 0.3598 (2) | 0.0510 | |
C244 | 0.2516 (3) | 0.57509 (14) | 0.4996 (2) | 0.0521 | |
C245 | 0.1561 (3) | 0.62754 (15) | 0.5452 (2) | 0.0518 | |
C246 | 0.0983 (3) | 0.69156 (15) | 0.4567 (2) | 0.0508 | |
C247 | 0.1781 (3) | 0.75212 (14) | 0.4123 (2) | 0.0501 | |
C248 | 0.3258 (3) | 0.75993 (14) | 0.4525 (2) | 0.0526 | |
C249 | 0.3709 (4) | 0.82531 (16) | 0.5274 (3) | 0.0690 | |
C250 | 0.5083 (4) | 0.8367 (2) | 0.5622 (3) | 0.0869 | |
C251 | 0.6022 (4) | 0.7840 (2) | 0.5239 (3) | 0.0880 | |
C252 | 0.5605 (3) | 0.7196 (2) | 0.4485 (3) | 0.0710 | |
C253 | 0.1153 (3) | 0.81115 (15) | 0.3319 (3) | 0.0623 | |
C254 | −0.0220 (3) | 0.8102 (2) | 0.2965 (3) | 0.0734 | |
C255 | −0.1001 (3) | 0.7509 (2) | 0.3410 (3) | 0.0784 | |
C256 | −0.0413 (3) | 0.69247 (19) | 0.4207 (3) | 0.0662 | |
C257 | 0.1087 (3) | 0.61708 (18) | 0.6740 (3) | 0.0650 | |
C258 | 0.1562 (4) | 0.55616 (19) | 0.7567 (3) | 0.0756 | |
C259 | 0.2512 (4) | 0.50555 (19) | 0.7121 (3) | 0.0786 | |
C260 | 0.2979 (3) | 0.51439 (17) | 0.5847 (3) | 0.0663 | |
C261 | 0.2680 (3) | 0.51992 (16) | 0.2681 (3) | 0.0680 | |
C262 | 0.3163 (4) | 0.51976 (18) | 0.1400 (3) | 0.0775 | |
C263 | 0.4004 (4) | 0.57836 (18) | 0.1020 (3) | 0.0744 | |
C264 | 0.4347 (3) | 0.63796 (17) | 0.1910 (3) | 0.0636 | |
H2491 | 0.3048 | 0.8610 | 0.5566 | 0.0830* | |
H2501 | 0.5345 | 0.8812 | 0.6128 | 0.1037* | |
H2511 | 0.6961 | 0.7923 | 0.5490 | 0.1061* | |
H2521 | 0.6258 | 0.6836 | 0.4189 | 0.0854* | |
H2531 | 0.1709 | 0.8509 | 0.2992 | 0.0750* | |
H2541 | −0.0617 | 0.8512 | 0.2430 | 0.0880* | |
H2551 | −0.1945 | 0.7500 | 0.3179 | 0.0942* | |
H2561 | −0.0957 | 0.6509 | 0.4523 | 0.0799* | |
H2571 | 0.0421 | 0.6521 | 0.7043 | 0.0779* | |
H2581 | 0.1233 | 0.5502 | 0.8439 | 0.0907* | |
H2591 | 0.2845 | 0.4645 | 0.7695 | 0.0945* | |
H2601 | 0.3622 | 0.4789 | 0.5536 | 0.0797* | |
H2611 | 0.2090 | 0.4794 | 0.2956 | 0.0817* | |
H2621 | 0.2906 | 0.4793 | 0.0775 | 0.0929* | |
H2631 | 0.4352 | 0.5779 | 0.0152 | 0.0891* | |
H2641 | 0.4938 | 0.6793 | 0.1677 | 0.0761* |
Atomic displacement parameters (Å2) top
U11 | U22 | U33 | U12 | U13 | U23 | |
C241 | 0.0522 (14) | 0.0560 (14) | 0.0515 (13) | −0.0093 (11) | 0.0055 (11) | 0.0089 (11) |
C242 | 0.0514 (14) | 0.0481 (13) | 0.0540 (13) | 0.0074 (11) | 0.0061 (11) | 0.0044 (10) |
C243 | 0.0596 (15) | 0.0416 (12) | 0.0524 (13) | 0.0073 (11) | 0.0077 (11) | −0.0003 (10) |
C244 | 0.0605 (15) | 0.0446 (13) | 0.0516 (13) | −0.0062 (11) | 0.0065 (11) | 0.0018 (10) |
C245 | 0.0570 (15) | 0.0496 (13) | 0.0489 (12) | −0.0077 (11) | 0.0049 (11) | −0.0007 (10) |
C246 | 0.0504 (13) | 0.0543 (14) | 0.0481 (12) | 0.0032 (11) | 0.0064 (10) | −0.0045 (11) |
C247 | 0.0614 (15) | 0.0449 (12) | 0.0442 (11) | 0.0072 (11) | 0.0038 (10) | −0.0062 (9) |
C248 | 0.0635 (15) | 0.0468 (13) | 0.0472 (12) | −0.0072 (11) | 0.0005 (11) | 0.0033 (10) |
C249 | 0.097 (2) | 0.0529 (15) | 0.0556 (15) | −0.0176 (15) | −0.0026 (15) | −0.0009 (12) |
C250 | 0.113 (3) | 0.085 (2) | 0.0604 (17) | −0.051 (2) | −0.0080 (18) | 0.0031 (16) |
C251 | 0.076 (2) | 0.114 (3) | 0.072 (2) | −0.045 (2) | −0.0051 (17) | 0.013 (2) |
C252 | 0.0549 (16) | 0.088 (2) | 0.0699 (17) | −0.0148 (15) | 0.0035 (13) | 0.0138 (16) |
C253 | 0.085 (2) | 0.0467 (13) | 0.0546 (14) | 0.0124 (13) | 0.0030 (13) | −0.0010 (11) |
C254 | 0.080 (2) | 0.082 (2) | 0.0569 (16) | 0.0349 (18) | −0.0017 (15) | −0.0043 (14) |
C255 | 0.0590 (18) | 0.114 (3) | 0.0624 (16) | 0.0226 (18) | 0.0045 (14) | −0.0009 (17) |
C256 | 0.0521 (15) | 0.089 (2) | 0.0585 (15) | 0.0030 (14) | 0.0104 (12) | −0.0024 (14) |
C257 | 0.0715 (19) | 0.0691 (18) | 0.0557 (15) | −0.0070 (14) | 0.0144 (13) | −0.0021 (13) |
C258 | 0.096 (2) | 0.077 (2) | 0.0555 (16) | −0.0119 (18) | 0.0155 (16) | 0.0117 (14) |
C259 | 0.103 (3) | 0.0665 (19) | 0.0667 (18) | −0.0044 (18) | 0.0075 (17) | 0.0199 (15) |
C260 | 0.081 (2) | 0.0516 (15) | 0.0671 (16) | 0.0031 (14) | 0.0084 (14) | 0.0106 (13) |
C261 | 0.096 (2) | 0.0431 (14) | 0.0659 (17) | 0.0008 (14) | 0.0093 (15) | −0.0037 (12) |
C262 | 0.122 (3) | 0.0512 (16) | 0.0594 (16) | 0.0177 (17) | 0.0078 (17) | −0.0068 (13) |
C263 | 0.105 (3) | 0.0636 (18) | 0.0567 (15) | 0.0267 (18) | 0.0220 (16) | 0.0026 (13) |
C264 | 0.0706 (18) | 0.0617 (17) | 0.0602 (15) | 0.0122 (14) | 0.0171 (13) | 0.0094 (13) |
Geometric parameters (Å, º) top
C241—C242 | 1.491 (3) | C252—H2521 | 0.951 |
C241—C248 | 1.395 (4) | C253—C254 | 1.373 (4) |
C241—C252 | 1.397 (4) | C253—H2531 | 0.945 |
C242—C243 | 1.391 (3) | C254—C255 | 1.365 (5) |
C242—C264 | 1.399 (3) | C254—H2541 | 0.948 |
C243—C244 | 1.497 (3) | C255—C256 | 1.377 (4) |
C243—C261 | 1.396 (3) | C255—H2551 | 0.942 |
C244—C245 | 1.396 (3) | C256—H2561 | 0.955 |
C244—C260 | 1.395 (3) | C257—C258 | 1.388 (4) |
C245—C246 | 1.492 (3) | C257—H2571 | 0.951 |
C245—C257 | 1.395 (3) | C258—C259 | 1.369 (4) |
C246—C247 | 1.390 (3) | C258—H2581 | 0.946 |
C246—C256 | 1.396 (3) | C259—C260 | 1.376 (4) |
C247—C248 | 1.488 (4) | C259—H2591 | 0.949 |
C247—C253 | 1.405 (3) | C260—H2601 | 0.943 |
C248—C249 | 1.399 (3) | C261—C262 | 1.380 (4) |
C249—C250 | 1.387 (4) | C261—H2611 | 0.956 |
C249—H2491 | 0.952 | C262—C263 | 1.369 (5) |
C250—C251 | 1.363 (5) | C262—H2621 | 0.952 |
C250—H2501 | 0.939 | C263—C264 | 1.376 (4) |
C251—C252 | 1.380 (5) | C263—H2631 | 0.944 |
C251—H2511 | 0.951 | C264—H2641 | 0.954 |
C242—C241—C248 | 121.5 (2) | C247—C253—C254 | 121.6 (3) |
C242—C241—C252 | 118.6 (3) | C247—C253—H2531 | 118.1 |
C248—C241—C252 | 119.6 (3) | C254—C253—H2531 | 120.3 |
C241—C242—C243 | 121.9 (2) | C253—C254—C255 | 119.4 (3) |
C241—C242—C264 | 119.0 (2) | C253—C254—H2541 | 119.7 |
C243—C242—C264 | 119.0 (2) | C255—C254—H2541 | 120.8 |
C242—C243—C244 | 122.3 (2) | C254—C255—C256 | 120.1 (3) |
C242—C243—C261 | 118.9 (2) | C254—C255—H2551 | 120.0 |
C244—C243—C261 | 118.7 (2) | C256—C255—H2551 | 119.9 |
C243—C244—C245 | 121.9 (2) | C246—C256—C255 | 121.5 (3) |
C243—C244—C260 | 119.0 (2) | C246—C256—H2561 | 118.1 |
C245—C244—C260 | 119.1 (2) | C255—C256—H2561 | 120.3 |
C244—C245—C246 | 121.6 (2) | C245—C257—C258 | 120.9 (3) |
C244—C245—C257 | 118.9 (2) | C245—C257—H2571 | 119.0 |
C246—C245—C257 | 119.4 (2) | C258—C257—H2571 | 120.1 |
C245—C246—C247 | 122.2 (2) | C257—C258—C259 | 119.9 (3) |
C245—C246—C256 | 119.2 (2) | C257—C258—H2581 | 119.7 |
C247—C246—C256 | 118.5 (3) | C259—C258—H2581 | 120.4 |
C246—C247—C248 | 123.0 (2) | C258—C259—C260 | 120.0 (3) |
C246—C247—C253 | 118.7 (3) | C258—C259—H2591 | 119.6 |
C248—C247—C253 | 118.2 (2) | C260—C259—H2591 | 120.4 |
C247—C248—C241 | 122.6 (2) | C244—C260—C259 | 121.2 (3) |
C247—C248—C249 | 118.9 (3) | C244—C260—H2601 | 119.0 |
C241—C248—C249 | 118.4 (3) | C259—C260—H2601 | 119.8 |
C248—C249—C250 | 120.9 (3) | C243—C261—C262 | 121.1 (3) |
C248—C249—H2491 | 118.5 | C243—C261—H2611 | 118.2 |
C250—C249—H2491 | 120.6 | C262—C261—H2611 | 120.7 |
C249—C250—C251 | 120.4 (3) | C261—C262—C263 | 120.0 (3) |
C249—C250—H2501 | 118.4 | C261—C262—H2621 | 120.3 |
C251—C250—H2501 | 121.2 | C263—C262—H2621 | 119.7 |
C250—C251—C252 | 119.8 (3) | C262—C263—C264 | 119.8 (3) |
C250—C251—H2511 | 119.5 | C262—C263—H2631 | 120.2 |
C252—C251—H2511 | 120.7 | C264—C263—H2631 | 119.9 |
C241—C252—C251 | 120.9 (3) | C242—C264—C263 | 121.2 (3) |
C241—C252—H2521 | 118.9 | C242—C264—H2641 | 117.2 |
C251—C252—H2521 | 120.2 | C263—C264—H2641 | 121.7 |