Download citation
Download citation
link to html
The synthesis and the structural characterization of a cyclic hexapeptoid with four meth­oxy­ethyl and two propargyl side chains have disclosed the presence of a hydrate crystal form [form (I)] and an anhydrous crystal form [form (II)]. The relative amounts of form (I) and form (II) in the as-purified product were determined by Rietveld refinement and depend on the purification procedures. In crystal form (I), peptoid molecules assemble in a columnar arrangement by means of side-chain-to-backbone C=CH...OC hydrogen bonds. In the anhydrous crystal form (II), cyclopeptoid molecules form ribbons by means of backbone-to-backbone CH2...OC hydrogen bonds, thus mimicking β-sheet secondary structures in proteins. In both crystal forms side chains act as joints among the columns or the ribbons and contribute to the stability of the whole solid-state assembly. Water molecules in the hydrate crystal form (I) bridge columns of cyclic peptoid molecules, providing a more efficient packing.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S2052520617002505/ps5059sup1.cif
Contains datablocks form_I_prime, form_II

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2052520617002505/ps5059form_I_primesup2.hkl
Contains datablock form_I_prime

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2052520617002505/ps5059form_IIsup3.hkl
Contains datablock form_II

txt

Text file https://doi.org/10.1107/S2052520617002505/ps5059sup4.txt
CIF file from multiphase Rietveld Refinement for BATCH1

txt

Text file https://doi.org/10.1107/S2052520617002505/ps5059sup5.txt
CIF file from multiphase Rietveld refinement for BATCH2

CCDC references: 1509155; 1509157

Computing details top

Data collection: CrystalClear (Rigaku Inc., 2007) for form_II. Cell refinement: CrystalClear (Rigaku Inc., 2007) for form_II. Data reduction: CrystalClear (Rigaku Inc., 2007) for form_II. Program(s) used to solve structure: SIR2014/14.10 for form_II. For both compounds, program(s) used to refine structure: SHELXL2014/7 (Sheldrick, 2015).

(form_I_prime) top
Crystal data top
C30H46N6O10·H2OZ = 2
Mr = 668.74F(000) = 716
Triclinic, P1Dx = 1.342 Mg m3
a = 8.363 (4) ÅSynchrotron radiation, λ = 0.2952 Å
b = 9.394 (4) ÅCell parameters from 8341 reflections
c = 21.648 (10) Åθ = 0.8–12.3°
α = 78.362 (5)°µ = 0.03 mm1
β = 88.664 (7)°T = 100 K
γ = 83.547 (5)°Needle, colorless
V = 1655.1 (13) Å30.35 × 0.03 × 0.01 mm
Data collection top
ID11 ESRF beamline goniometer
diffractometer
θmax = 12.3°, θmin = 0.8°
32391 measured reflectionsh = 1111
8341 independent reflectionsk = 1211
7288 reflections with I > 2σ(I)l = 3030
Rint = 0.039
Refinement top
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.073H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.195 w = 1/[σ2(Fo2) + (0.1031P)2 + 1.1901P]
where P = (Fo2 + 2Fc2)/3
S = 1.14(Δ/σ)max = 0.001
8341 reflectionsΔρmax = 0.71 e Å3
430 parametersΔρmin = 0.38 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O1A0.74225 (17)0.92177 (16)1.02791 (7)0.0252 (3)
N1A0.74524 (18)0.81106 (17)0.94374 (8)0.0178 (3)
C1A0.9907 (2)0.7823 (2)1.00927 (9)0.0185 (3)
H1A11.02490.70910.98310.022*
H1A21.05900.86330.99800.022*
O2A0.87603 (16)0.53295 (15)1.05882 (7)0.0209 (3)
N2A1.01386 (18)0.71441 (17)1.07611 (8)0.0185 (3)
C2A0.8142 (2)0.84198 (19)0.99489 (9)0.0179 (3)
O3A1.00499 (17)0.12331 (15)1.13677 (7)0.0232 (3)
N3A0.97028 (18)0.34172 (17)1.16749 (8)0.0181 (3)
C3A0.5785 (2)0.8740 (2)0.92715 (10)0.0198 (4)
H3A10.54690.95330.95040.024*
H3A20.57210.91680.88150.024*
O4A1.34183 (16)0.62653 (16)1.12899 (8)0.0254 (3)
C4A0.4666 (2)0.7620 (2)0.94270 (10)0.0236 (4)
O5A0.9467 (2)0.25030 (18)1.30553 (8)0.0310 (3)
C5A0.3817 (3)0.6672 (3)0.95528 (13)0.0325 (5)
H5A0.31370.59120.96540.039*
C6A1.0091 (2)0.4919 (2)1.15991 (9)0.0193 (4)
H6A11.12650.49141.16510.023*
H6A20.95390.53771.19310.023*
C7A0.9573 (2)0.58310 (19)1.09454 (9)0.0175 (3)
C8A1.0958 (2)0.7886 (2)1.11771 (10)0.0204 (4)
H8A11.06900.74741.16200.024*
H8A21.05410.89361.10890.024*
C9A1.2776 (2)0.7753 (2)1.11053 (10)0.0228 (4)
H9A11.30650.81291.06610.027*
H9A21.32400.83461.13710.027*
C10A1.5140 (3)0.6127 (3)1.12554 (12)0.0309 (5)
H10A1.55620.50951.13840.046*
H10B1.54750.64981.08210.046*
H10C1.55600.66921.15370.046*
C11A1.1839 (2)0.2998 (2)1.09022 (9)0.0187 (3)
H11A1.14310.38871.05940.022*
H11B1.26810.32631.11590.022*
C12A1.0452 (2)0.2471 (2)1.13357 (9)0.0186 (3)
C14A0.8652 (2)0.1851 (2)1.26333 (10)0.0240 (4)
H14A0.76500.15051.28310.029*
H14B0.93440.10001.25330.029*
C15A1.0130 (3)0.1411 (3)1.35706 (12)0.0400 (6)
H15A1.06870.18751.38570.060*
H15B0.92630.09061.37980.060*
H15C1.08950.07031.34100.060*
O1B0.68448 (19)0.88806 (17)0.40395 (8)0.0284 (3)
N1B0.7209 (2)0.69122 (18)0.35604 (8)0.0218 (3)
C1B0.5631 (3)0.6705 (2)0.45226 (10)0.0287 (4)
H1B10.47160.64180.43110.034*
H1B20.63060.57980.47160.034*
O2B0.64804 (18)0.57381 (18)0.57418 (8)0.0290 (3)
N2B0.4995 (2)0.7449 (2)0.50258 (9)0.0276 (4)
C2B0.6626 (2)0.7611 (2)0.40253 (10)0.0224 (4)
O3B0.50204 (18)0.37605 (16)0.72072 (8)0.0273 (3)
N3B0.4831 (2)0.62066 (18)0.67600 (8)0.0217 (3)
C3B0.8003 (2)0.7757 (2)0.30153 (10)0.0240 (4)
H3B10.77890.88110.30230.029*
H3B20.75360.75970.26220.029*
O4B0.1552 (2)0.7213 (2)0.51828 (9)0.0359 (4)
C4B0.9758 (3)0.7345 (2)0.30111 (11)0.0273 (4)
O5B0.59209 (19)0.89820 (17)0.70119 (8)0.0292 (3)
C5B1.1172 (3)0.7014 (3)0.29982 (13)0.0365 (5)
H5B1.23010.67490.29880.044*
C6B0.4449 (2)0.7278 (2)0.61745 (10)0.0216 (4)
H6B10.47340.82480.62180.026*
H6B20.32810.73680.60870.026*
C7B0.5411 (2)0.6768 (2)0.56247 (10)0.0239 (4)
C8B0.3725 (3)0.8673 (2)0.48626 (11)0.0299 (4)
H8B10.41060.94000.45090.036*
H8B20.35340.91530.52290.036*
C9B0.2141 (3)0.8231 (3)0.46754 (12)0.0374 (5)
H9B10.13460.91060.45680.045*
H9B20.23040.77830.42990.045*
C10B0.0021 (4)0.6887 (4)0.50510 (18)0.0538 (8)
H10D0.03940.61840.54090.081*
H10E0.07660.77870.49830.081*
H10F0.00180.64660.46710.081*
C11B0.2922 (2)0.4623 (2)0.64413 (10)0.0211 (4)
H11C0.19240.50520.66200.025*
H11D0.30290.51590.60020.025*
C12B0.4384 (2)0.4822 (2)0.68309 (10)0.0211 (4)
C13B0.6309 (2)0.6366 (2)0.70932 (11)0.0251 (4)
H13A0.71910.65080.67820.030*
H13B0.66170.54450.73990.030*
C13A0.8258 (2)0.2977 (2)1.20353 (10)0.0204 (4)
H13C0.75650.25711.17650.024*
H13D0.76420.38531.21460.024*
C14B0.6151 (3)0.7616 (2)0.74407 (11)0.0266 (4)
H14C0.52260.75220.77340.032*
H14D0.71350.75720.76920.032*
C15B0.5930 (3)1.0176 (3)0.73273 (13)0.0343 (5)
H15D0.57691.10990.70190.052*
H15E0.50611.01410.76400.052*
H15F0.69661.01070.75400.052*
O1W0.2646 (2)0.0544 (2)0.84233 (8)0.0323 (4)
H1W0.186 (5)0.005 (4)0.8422 (19)0.060*
H2W0.258 (5)0.076 (4)0.883 (2)0.060*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O1A0.0187 (7)0.0252 (7)0.0322 (8)0.0056 (5)0.0047 (6)0.0111 (6)
N1A0.0081 (7)0.0178 (7)0.0286 (8)0.0007 (5)0.0003 (6)0.0075 (6)
C1A0.0110 (8)0.0158 (8)0.0281 (10)0.0026 (6)0.0017 (6)0.0026 (6)
O2A0.0133 (6)0.0188 (6)0.0315 (7)0.0049 (5)0.0020 (5)0.0055 (5)
N2A0.0119 (7)0.0163 (7)0.0276 (8)0.0027 (5)0.0027 (6)0.0043 (6)
C2A0.0119 (8)0.0130 (8)0.0289 (9)0.0022 (6)0.0013 (7)0.0039 (6)
O3A0.0188 (7)0.0177 (7)0.0348 (8)0.0057 (5)0.0039 (6)0.0079 (5)
N3A0.0121 (7)0.0154 (7)0.0267 (8)0.0028 (5)0.0031 (6)0.0036 (5)
C3A0.0097 (8)0.0192 (8)0.0303 (10)0.0010 (6)0.0024 (7)0.0046 (7)
O4A0.0121 (7)0.0215 (7)0.0414 (9)0.0019 (5)0.0035 (6)0.0035 (6)
C4A0.0115 (8)0.0253 (10)0.0357 (11)0.0009 (6)0.0012 (7)0.0106 (8)
O5A0.0317 (9)0.0312 (8)0.0295 (8)0.0040 (6)0.0036 (6)0.0041 (6)
C5A0.0155 (9)0.0309 (11)0.0550 (15)0.0066 (8)0.0037 (9)0.0157 (10)
C6A0.0152 (8)0.0162 (8)0.0274 (9)0.0028 (6)0.0003 (7)0.0062 (6)
C7A0.0086 (7)0.0153 (8)0.0289 (9)0.0016 (6)0.0014 (6)0.0056 (6)
C8A0.0167 (9)0.0137 (8)0.0327 (10)0.0031 (6)0.0020 (7)0.0084 (6)
C9A0.0160 (9)0.0204 (9)0.0333 (11)0.0045 (6)0.0035 (7)0.0065 (7)
C10A0.0142 (10)0.0348 (12)0.0434 (13)0.0010 (8)0.0040 (8)0.0074 (9)
C11A0.0114 (8)0.0178 (8)0.0286 (10)0.0036 (6)0.0015 (7)0.0072 (6)
C12A0.0105 (8)0.0189 (8)0.0265 (9)0.0014 (6)0.0011 (6)0.0051 (6)
C14A0.0215 (9)0.0178 (9)0.0320 (11)0.0029 (7)0.0043 (8)0.0034 (7)
C15A0.0305 (12)0.0514 (15)0.0322 (13)0.0030 (10)0.0022 (10)0.0018 (10)
O1B0.0284 (8)0.0243 (8)0.0351 (8)0.0092 (6)0.0025 (6)0.0091 (6)
N1B0.0170 (8)0.0207 (8)0.0285 (9)0.0054 (6)0.0018 (6)0.0054 (6)
C1B0.0345 (12)0.0257 (10)0.0285 (11)0.0103 (8)0.0063 (8)0.0081 (8)
O2B0.0200 (7)0.0290 (8)0.0399 (9)0.0018 (6)0.0029 (6)0.0123 (6)
N2B0.0297 (10)0.0249 (9)0.0296 (9)0.0062 (7)0.0053 (7)0.0075 (7)
C2B0.0187 (9)0.0221 (9)0.0277 (10)0.0058 (7)0.0004 (7)0.0063 (7)
O3B0.0203 (7)0.0225 (7)0.0382 (9)0.0028 (5)0.0056 (6)0.0031 (6)
N3B0.0150 (7)0.0210 (8)0.0298 (9)0.0039 (6)0.0026 (6)0.0053 (6)
C3B0.0185 (9)0.0234 (9)0.0299 (10)0.0058 (7)0.0026 (7)0.0032 (7)
O4B0.0274 (8)0.0390 (10)0.0415 (10)0.0093 (7)0.0086 (7)0.0047 (7)
C4B0.0213 (10)0.0274 (10)0.0350 (11)0.0079 (7)0.0021 (8)0.0079 (8)
O5B0.0281 (8)0.0232 (8)0.0377 (9)0.0032 (6)0.0048 (6)0.0085 (6)
C5B0.0208 (11)0.0373 (13)0.0543 (15)0.0047 (9)0.0014 (10)0.0156 (11)
C6B0.0168 (9)0.0202 (9)0.0284 (10)0.0024 (6)0.0003 (7)0.0063 (7)
C7B0.0198 (9)0.0230 (9)0.0321 (11)0.0102 (7)0.0046 (7)0.0093 (7)
C8B0.0352 (12)0.0234 (10)0.0304 (11)0.0027 (8)0.0014 (9)0.0042 (8)
C9B0.0385 (13)0.0383 (13)0.0333 (12)0.0014 (10)0.0080 (10)0.0030 (9)
C10B0.0338 (15)0.0611 (19)0.071 (2)0.0146 (13)0.0180 (14)0.0179 (15)
C11B0.0146 (8)0.0195 (9)0.0301 (10)0.0036 (6)0.0010 (7)0.0058 (7)
C12B0.0135 (8)0.0209 (9)0.0299 (10)0.0019 (6)0.0011 (7)0.0073 (7)
C13B0.0155 (9)0.0235 (10)0.0377 (11)0.0037 (7)0.0063 (8)0.0075 (8)
C13A0.0122 (8)0.0197 (9)0.0291 (10)0.0020 (6)0.0040 (7)0.0045 (7)
C14B0.0196 (9)0.0273 (10)0.0342 (11)0.0046 (7)0.0046 (8)0.0075 (8)
C15B0.0292 (11)0.0282 (11)0.0487 (14)0.0008 (8)0.0057 (10)0.0155 (9)
O1W0.0234 (8)0.0411 (10)0.0333 (9)0.0107 (7)0.0017 (6)0.0058 (7)
Geometric parameters (Å, º) top
O1A—C2A1.237 (2)N1B—C3B1.472 (3)
N1A—C2A1.356 (2)C1B—N2B1.468 (3)
N1A—C11Ai1.458 (2)C1B—C2B1.524 (3)
N1A—C3A1.475 (2)C1B—H1B10.9900
C1A—N2A1.467 (3)C1B—H1B20.9900
C1A—C2A1.535 (2)O2B—C7B1.232 (3)
C1A—H1A10.9900N2B—C7B1.359 (3)
C1A—H1A20.9900N2B—C8B1.468 (3)
O2A—C7A1.235 (2)O3B—C12B1.230 (3)
N2A—C7A1.352 (2)N3B—C12B1.372 (3)
N2A—C8A1.469 (2)N3B—C6B1.468 (3)
O3A—C12A1.235 (2)N3B—C13B1.482 (2)
N3A—C12A1.356 (2)C3B—C4B1.475 (3)
N3A—C6A1.459 (2)C3B—H3B10.9900
N3A—C13A1.476 (2)C3B—H3B20.9900
C3A—C4A1.469 (3)O4B—C9B1.421 (3)
C3A—H3A10.9900O4B—C10B1.432 (3)
C3A—H3A20.9900C4B—C5B1.189 (3)
O4A—C9A1.421 (2)O5B—C14B1.421 (3)
O4A—C10A1.432 (3)O5B—C15B1.426 (3)
C4A—C5A1.187 (3)C5B—H5B0.9500
O5A—C14A1.422 (3)C6B—C7B1.547 (3)
O5A—C15A1.429 (3)C6B—H6B10.9900
C5A—H5A0.9500C6B—H6B20.9900
C6A—C7A1.543 (3)C8B—C9B1.519 (4)
C6A—H6A10.9900C8B—H8B10.9900
C6A—H6A20.9900C8B—H8B20.9900
C8A—C9A1.518 (3)C9B—H9B10.9900
C8A—H8A10.9900C9B—H9B20.9900
C8A—H8A20.9900C10B—H10D0.9800
C9A—H9A10.9900C10B—H10E0.9800
C9A—H9A20.9900C10B—H10F0.9800
C10A—H10A0.9800C11B—N1Bii1.460 (2)
C10A—H10B0.9800C11B—C12B1.551 (3)
C10A—H10C0.9800C11B—H11C0.9900
C11A—N1Ai1.458 (2)C11B—H11D0.9900
C11A—C12A1.536 (3)C13B—C14B1.510 (3)
C11A—H11A0.9900C13B—H13A0.9900
C11A—H11B0.9900C13B—H13B0.9900
C14A—C13A1.514 (3)C13A—H13C0.9900
C14A—H14A0.9900C13A—H13D0.9900
C14A—H14B0.9900C14B—H14C0.9900
C15A—H15A0.9800C14B—H14D0.9900
C15A—H15B0.9800C15B—H15D0.9800
C15A—H15C0.9800C15B—H15E0.9800
O1B—C2B1.233 (3)C15B—H15F0.9800
N1B—C2B1.362 (3)O1W—H1W0.91 (4)
N1B—C11Bii1.460 (2)O1W—H2W0.94 (4)
C2A—N1A—C11Ai123.55 (15)C2B—C1B—H1B2108.6
C2A—N1A—C3A118.89 (15)H1B1—C1B—H1B2107.6
C11Ai—N1A—C3A116.79 (15)C7B—N2B—C8B124.50 (18)
N2A—C1A—C2A111.46 (15)C7B—N2B—C1B116.21 (18)
N2A—C1A—H1A1109.3C8B—N2B—C1B118.00 (19)
C2A—C1A—H1A1109.3O1B—C2B—N1B123.33 (19)
N2A—C1A—H1A2109.3O1B—C2B—C1B122.36 (19)
C2A—C1A—H1A2109.3N1B—C2B—C1B114.29 (17)
H1A1—C1A—H1A2108.0C12B—N3B—C6B119.98 (17)
C7A—N2A—C1A115.52 (15)C12B—N3B—C13B116.88 (17)
C7A—N2A—C8A124.63 (17)C6B—N3B—C13B116.13 (16)
C1A—N2A—C8A119.84 (15)N1B—C3B—C4B112.50 (18)
O1A—C2A—N1A122.24 (17)N1B—C3B—H3B1109.1
O1A—C2A—C1A119.56 (17)C4B—C3B—H3B1109.1
N1A—C2A—C1A118.09 (16)N1B—C3B—H3B2109.1
C12A—N3A—C6A122.06 (16)C4B—C3B—H3B2109.1
C12A—N3A—C13A117.28 (15)H3B1—C3B—H3B2107.8
C6A—N3A—C13A119.62 (15)C9B—O4B—C10B111.4 (2)
C4A—C3A—N1A111.02 (16)C5B—C4B—C3B179.0 (3)
C4A—C3A—H3A1109.4C14B—O5B—C15B111.55 (18)
N1A—C3A—H3A1109.4C4B—C5B—H5B180.0
C4A—C3A—H3A2109.4N3B—C6B—C7B109.12 (16)
N1A—C3A—H3A2109.4N3B—C6B—H6B1109.9
H3A1—C3A—H3A2108.0C7B—C6B—H6B1109.9
C9A—O4A—C10A110.55 (16)N3B—C6B—H6B2109.9
C5A—C4A—C3A177.2 (2)C7B—C6B—H6B2109.9
C14A—O5A—C15A110.36 (19)H6B1—C6B—H6B2108.3
C4A—C5A—H5A180.0O2B—C7B—N2B122.50 (19)
N3A—C6A—C7A111.44 (15)O2B—C7B—C6B119.34 (19)
N3A—C6A—H6A1109.3N2B—C7B—C6B118.12 (18)
C7A—C6A—H6A1109.3N2B—C8B—C9B114.0 (2)
N3A—C6A—H6A2109.3N2B—C8B—H8B1108.7
C7A—C6A—H6A2109.3C9B—C8B—H8B1108.7
H6A1—C6A—H6A2108.0N2B—C8B—H8B2108.7
O2A—C7A—N2A121.39 (18)C9B—C8B—H8B2108.7
O2A—C7A—C6A120.73 (16)H8B1—C8B—H8B2107.6
N2A—C7A—C6A117.70 (16)O4B—C9B—C8B109.67 (19)
N2A—C8A—C9A114.07 (16)O4B—C9B—H9B1109.7
N2A—C8A—H8A1108.7C8B—C9B—H9B1109.7
C9A—C8A—H8A1108.7O4B—C9B—H9B2109.7
N2A—C8A—H8A2108.7C8B—C9B—H9B2109.7
C9A—C8A—H8A2108.7H9B1—C9B—H9B2108.2
H8A1—C8A—H8A2107.6O4B—C10B—H10D109.5
O4A—C9A—C8A109.74 (15)O4B—C10B—H10E109.5
O4A—C9A—H9A1109.7H10D—C10B—H10E109.5
C8A—C9A—H9A1109.7O4B—C10B—H10F109.5
O4A—C9A—H9A2109.7H10D—C10B—H10F109.5
C8A—C9A—H9A2109.7H10E—C10B—H10F109.5
H9A1—C9A—H9A2108.2N1Bii—C11B—C12B112.21 (16)
O4A—C10A—H10A109.5N1Bii—C11B—H11C109.2
O4A—C10A—H10B109.5C12B—C11B—H11C109.2
H10A—C10A—H10B109.5N1Bii—C11B—H11D109.2
O4A—C10A—H10C109.5C12B—C11B—H11D109.2
H10A—C10A—H10C109.5H11C—C11B—H11D107.9
H10B—C10A—H10C109.5O3B—C12B—N3B123.74 (18)
N1Ai—C11A—C12A112.30 (15)O3B—C12B—C11B118.84 (18)
N1Ai—C11A—H11A109.1N3B—C12B—C11B117.30 (17)
C12A—C11A—H11A109.1N3B—C13B—C14B114.55 (17)
N1Ai—C11A—H11B109.1N3B—C13B—H13A108.6
C12A—C11A—H11B109.1C14B—C13B—H13A108.6
H11A—C11A—H11B107.9N3B—C13B—H13B108.6
O3A—C12A—N3A122.11 (17)C14B—C13B—H13B108.6
O3A—C12A—C11A120.57 (17)H13A—C13B—H13B107.6
N3A—C12A—C11A117.32 (16)N3A—C13A—C14A113.00 (16)
O5A—C14A—C13A108.82 (16)N3A—C13A—H13C109.0
O5A—C14A—H14A109.9C14A—C13A—H13C109.0
C13A—C14A—H14A109.9N3A—C13A—H13D109.0
O5A—C14A—H14B109.9C14A—C13A—H13D109.0
C13A—C14A—H14B109.9H13C—C13A—H13D107.8
H14A—C14A—H14B108.3O5B—C14B—C13B110.87 (18)
O5A—C15A—H15A109.5O5B—C14B—H14C109.5
O5A—C15A—H15B109.5C13B—C14B—H14C109.5
H15A—C15A—H15B109.5O5B—C14B—H14D109.5
O5A—C15A—H15C109.5C13B—C14B—H14D109.5
H15A—C15A—H15C109.5H14C—C14B—H14D108.1
H15B—C15A—H15C109.5O5B—C15B—H15D109.5
C2B—N1B—C11Bii124.37 (17)O5B—C15B—H15E109.5
C2B—N1B—C3B118.35 (17)H15D—C15B—H15E109.5
C11Bii—N1B—C3B117.27 (17)O5B—C15B—H15F109.5
N2B—C1B—C2B114.71 (18)H15D—C15B—H15F109.5
N2B—C1B—H1B1108.6H15E—C15B—H15F109.5
C2B—C1B—H1B1108.6H1W—O1W—H2W104 (3)
N2B—C1B—H1B2108.6
C2A—C1A—N2A—C7A73.4 (2)C2B—C1B—N2B—C7B122.9 (2)
C2A—C1A—N2A—C8A107.33 (18)C2B—C1B—N2B—C8B69.5 (3)
C11Ai—N1A—C2A—O1A170.00 (18)C11Bii—N1B—C2B—O1B174.88 (19)
C3A—N1A—C2A—O1A0.4 (3)C3B—N1B—C2B—O1B6.3 (3)
C11Ai—N1A—C2A—C1A13.6 (3)C11Bii—N1B—C2B—C1B6.7 (3)
C3A—N1A—C2A—C1A176.73 (15)C3B—N1B—C2B—C1B172.14 (18)
N2A—C1A—C2A—O1A50.4 (2)N2B—C1B—C2B—O1B1.6 (3)
N2A—C1A—C2A—N1A133.17 (17)N2B—C1B—C2B—N1B179.98 (18)
C2A—N1A—C3A—C4A106.4 (2)C2B—N1B—C3B—C4B108.9 (2)
C11Ai—N1A—C3A—C4A63.9 (2)C11Bii—N1B—C3B—C4B72.1 (2)
C12A—N3A—C6A—C7A67.6 (2)C12B—N3B—C6B—C7B66.2 (2)
C13A—N3A—C6A—C7A100.49 (19)C13B—N3B—C6B—C7B83.6 (2)
C1A—N2A—C7A—O2A7.8 (3)C8B—N2B—C7B—O2B179.6 (2)
C8A—N2A—C7A—O2A172.99 (17)C1B—N2B—C7B—O2B12.9 (3)
C1A—N2A—C7A—C6A167.36 (15)C8B—N2B—C7B—C6B2.1 (3)
C8A—N2A—C7A—C6A11.8 (3)C1B—N2B—C7B—C6B164.67 (17)
N3A—C6A—C7A—O2A8.2 (2)N3B—C6B—C7B—O2B10.4 (2)
N3A—C6A—C7A—N2A167.05 (16)N3B—C6B—C7B—N2B167.25 (17)
C7A—N2A—C8A—C9A101.6 (2)C7B—N2B—C8B—C9B99.8 (2)
C1A—N2A—C8A—C9A77.6 (2)C1B—N2B—C8B—C9B66.7 (3)
C10A—O4A—C9A—C8A177.11 (17)C10B—O4B—C9B—C8B173.8 (2)
N2A—C8A—C9A—O4A64.2 (2)N2B—C8B—C9B—O4B59.9 (3)
C6A—N3A—C12A—O3A174.94 (17)C6B—N3B—C12B—O3B158.53 (19)
C13A—N3A—C12A—O3A6.6 (3)C13B—N3B—C12B—O3B8.9 (3)
C6A—N3A—C12A—C11A4.9 (3)C6B—N3B—C12B—C11B25.5 (3)
C13A—N3A—C12A—C11A173.28 (16)C13B—N3B—C12B—C11B175.11 (17)
N1Ai—C11A—C12A—O3A0.1 (3)N1Bii—C11B—C12B—O3B17.2 (3)
N1Ai—C11A—C12A—N3A179.97 (16)N1Bii—C11B—C12B—N3B166.63 (17)
C15A—O5A—C14A—C13A168.86 (18)C12B—N3B—C13B—C14B134.2 (2)
C12A—N3A—C13A—C14A76.4 (2)C6B—N3B—C13B—C14B75.0 (2)
C6A—N3A—C13A—C14A114.92 (19)C15B—O5B—C14B—C13B174.20 (17)
O5A—C14A—C13A—N3A66.3 (2)N3B—C13B—C14B—O5B66.2 (2)
Symmetry codes: (i) x+2, y+1, z+2; (ii) x+1, y+1, z+1.
(form_II) top
Crystal data top
C30H46N6O10F(000) = 696
Mr = 650.73Dx = 1.280 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 9.0367 (17) ÅCell parameters from 5055 reflections
b = 10.6221 (18) Åθ = 2.2–28.9°
c = 18.022 (3) ŵ = 0.10 mm1
β = 102.661 (4)°T = 100 K
V = 1687.9 (5) Å3Plate, colorless
Z = 20.4 × 0.3 × 0.2 mm
Data collection top
AFC7S Rigaku
diffractometer
4342 independent reflections
Radiation source: Sealed Tube2516 reflections with I > 2σ(I)
Graphite Monochromator monochromatorRint = 0.055
Detector resolution: 13.6612 pixels mm-1θmax = 29.0°, θmin = 2.2°
dtprofit.ref scansh = 712
Absorption correction: multi-scan
Blessing, 1995
k = 1410
Tmin = 0.766, Tmax = 1.000l = 2423
14363 measured reflections
Refinement top
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.061 w = 1/[σ2(Fo2) + (0.0853P)2]
where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.173(Δ/σ)max < 0.001
S = 0.92Δρmax = 0.36 e Å3
4342 reflectionsΔρmin = 0.31 e Å3
209 parametersExtinction correction: SHELXL-2014/7 (Sheldrick 2014), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0064 (17)
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O10.06954 (17)0.06173 (12)0.17281 (8)0.0358 (4)
O20.47174 (15)0.02091 (11)0.09270 (7)0.0267 (3)
O30.87960 (15)0.17924 (12)0.05125 (8)0.0302 (4)
O40.31564 (17)0.38143 (12)0.01185 (9)0.0358 (4)
O50.7970 (2)0.24785 (12)0.29492 (9)0.0457 (5)
N10.19920 (19)0.19463 (13)0.08366 (9)0.0260 (4)
N20.26354 (17)0.13750 (13)0.09465 (9)0.0250 (4)
N30.64527 (18)0.21513 (13)0.12366 (9)0.0245 (4)
C10.2025 (2)0.03279 (16)0.05714 (12)0.0269 (4)
H1A0.28070.00440.01280.032*
H1B0.11410.06300.03810.032*
C20.1543 (2)0.07796 (17)0.11014 (12)0.0269 (4)
C30.1213 (2)0.30404 (17)0.12311 (12)0.0313 (5)
H3A0.09950.36440.08500.038*
H3B0.02310.27680.15520.038*
C40.2096 (3)0.36767 (18)0.17088 (12)0.0358 (5)
C50.2832 (3)0.4190 (2)0.20880 (14)0.0462 (6)
H50.34220.46010.23920.055*
C60.4850 (2)0.23825 (17)0.12908 (12)0.0260 (4)
H6A0.47290.31020.09600.031*
H6B0.43650.26100.18210.031*
C70.4051 (2)0.12224 (16)0.10520 (11)0.0241 (4)
C80.1723 (2)0.25234 (16)0.11115 (12)0.0280 (5)
H8A0.21340.30440.14750.034*
H8B0.06710.22890.13590.034*
C90.1696 (2)0.33025 (17)0.04121 (13)0.0316 (5)
H9A0.13880.27690.00210.038*
H9B0.09470.39920.05450.038*
C100.3211 (3)0.44937 (19)0.05695 (13)0.0417 (6)
H10A0.29090.39380.09450.063*
H10B0.42460.47980.07690.063*
H10C0.25150.52120.04680.063*
C110.6839 (2)0.21781 (17)0.01622 (11)0.0251 (4)
H11A0.59920.15810.01470.030*
H11B0.64390.30420.01830.030*
C120.7451 (2)0.20279 (16)0.05599 (11)0.0235 (4)
C130.6958 (2)0.18054 (16)0.19275 (11)0.0253 (4)
H13A0.77930.11860.17980.030*
H13B0.61090.14000.22900.030*
C140.7501 (2)0.29427 (16)0.23049 (11)0.0274 (4)
H14A0.83560.33580.19530.033*
H14B0.66690.35600.24570.033*
C150.8611 (4)0.3446 (2)0.33318 (15)0.0556 (8)
H15A0.94510.38490.29740.083*
H15B0.89890.30780.37530.083*
H15C0.78330.40760.35310.083*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.0334 (9)0.0393 (8)0.0301 (9)0.0090 (6)0.0029 (7)0.0082 (6)
O20.0243 (8)0.0279 (7)0.0295 (8)0.0013 (5)0.0093 (6)0.0002 (5)
O30.0211 (8)0.0394 (8)0.0309 (9)0.0001 (5)0.0071 (6)0.0016 (6)
O40.0342 (9)0.0361 (7)0.0387 (9)0.0084 (6)0.0117 (7)0.0057 (6)
O50.0761 (13)0.0301 (8)0.0450 (10)0.0074 (7)0.0436 (9)0.0027 (6)
N10.0249 (9)0.0275 (8)0.0245 (9)0.0029 (6)0.0029 (7)0.0014 (6)
N20.0187 (9)0.0262 (8)0.0309 (10)0.0013 (6)0.0074 (7)0.0032 (6)
N30.0192 (9)0.0331 (8)0.0217 (9)0.0018 (6)0.0060 (7)0.0013 (6)
C10.0208 (10)0.0289 (10)0.0325 (12)0.0014 (7)0.0093 (9)0.0016 (7)
C20.0214 (10)0.0334 (10)0.0265 (11)0.0043 (7)0.0063 (9)0.0019 (8)
C30.0345 (12)0.0297 (10)0.0281 (12)0.0060 (8)0.0035 (10)0.0008 (7)
C40.0441 (14)0.0312 (10)0.0282 (12)0.0004 (9)0.0002 (10)0.0020 (8)
C50.0582 (17)0.0448 (13)0.0325 (13)0.0124 (11)0.0031 (12)0.0037 (9)
C60.0190 (10)0.0319 (10)0.0280 (11)0.0007 (7)0.0070 (8)0.0034 (7)
C70.0199 (10)0.0285 (10)0.0228 (10)0.0012 (7)0.0025 (8)0.0021 (7)
C80.0198 (10)0.0300 (10)0.0343 (12)0.0007 (7)0.0066 (9)0.0026 (8)
C90.0250 (11)0.0311 (10)0.0397 (13)0.0003 (8)0.0095 (10)0.0002 (8)
C100.0546 (16)0.0347 (11)0.0374 (14)0.0041 (10)0.0138 (12)0.0031 (9)
C110.0220 (11)0.0302 (9)0.0233 (10)0.0008 (7)0.0055 (8)0.0007 (7)
C120.0202 (10)0.0244 (9)0.0277 (11)0.0012 (7)0.0091 (8)0.0024 (7)
C130.0236 (10)0.0303 (10)0.0227 (10)0.0037 (7)0.0067 (8)0.0009 (7)
C140.0296 (12)0.0309 (10)0.0241 (11)0.0002 (8)0.0109 (9)0.0013 (7)
C150.091 (2)0.0384 (12)0.0541 (17)0.0130 (12)0.0522 (16)0.0002 (10)
Geometric parameters (Å, º) top
O1—C21.230 (2)C6—C71.536 (3)
O2—C71.230 (2)C6—H6A0.9900
O3—C121.225 (2)C6—H6B0.9900
O4—C91.419 (2)C8—C91.513 (3)
O4—C101.426 (2)C8—H8A0.9900
O5—C141.410 (2)C8—H8B0.9900
O5—C151.429 (3)C9—H9A0.9900
N1—C21.358 (2)C9—H9B0.9900
N1—C11i1.446 (2)C10—H10A0.9800
N1—C31.460 (2)C10—H10B0.9800
N2—C71.344 (2)C10—H10C0.9800
N2—C81.466 (2)C11—N1i1.446 (2)
N2—C11.470 (2)C11—C121.530 (3)
N3—C121.355 (2)C11—H11A0.9900
N3—C61.451 (2)C11—H11B0.9900
N3—C131.464 (2)C13—C141.520 (2)
C1—C21.518 (3)C13—H13A0.9900
C1—H1A0.9900C13—H13B0.9900
C1—H1B0.9900C14—H14A0.9900
C3—C41.461 (3)C14—H14B0.9900
C3—H3A0.9900C15—H15A0.9800
C3—H3B0.9900C15—H15B0.9800
C4—C51.186 (3)C15—H15C0.9800
C5—H50.9500
C9—O4—C10111.72 (16)C9—C8—H8B108.9
C14—O5—C15111.87 (15)H8A—C8—H8B107.7
C2—N1—C11i123.90 (15)O4—C9—C8109.65 (17)
C2—N1—C3118.71 (16)O4—C9—H9A109.7
C11i—N1—C3117.33 (14)C8—C9—H9A109.7
C7—N2—C8125.60 (15)O4—C9—H9B109.7
C7—N2—C1116.01 (14)C8—C9—H9B109.7
C8—N2—C1118.17 (15)H9A—C9—H9B108.2
C12—N3—C6122.33 (16)O4—C10—H10A109.5
C12—N3—C13118.10 (16)O4—C10—H10B109.5
C6—N3—C13118.55 (16)H10A—C10—H10B109.5
N2—C1—C2112.44 (16)O4—C10—H10C109.5
N2—C1—H1A109.1H10A—C10—H10C109.5
C2—C1—H1A109.1H10B—C10—H10C109.5
N2—C1—H1B109.1N1i—C11—C12111.30 (16)
C2—C1—H1B109.1N1i—C11—H11A109.4
H1A—C1—H1B107.8C12—C11—H11A109.4
O1—C2—N1121.92 (17)N1i—C11—H11B109.4
O1—C2—C1120.28 (16)C12—C11—H11B109.4
N1—C2—C1117.64 (17)H11A—C11—H11B108.0
N1—C3—C4112.80 (17)O3—C12—N3122.48 (17)
N1—C3—H3A109.0O3—C12—C11120.01 (18)
C4—C3—H3A109.0N3—C12—C11117.51 (16)
N1—C3—H3B109.0N3—C13—C14111.88 (14)
C4—C3—H3B109.0N3—C13—H13A109.2
H3A—C3—H3B107.8C14—C13—H13A109.2
C5—C4—C3179.0 (3)N3—C13—H13B109.2
C4—C5—H5180.0C14—C13—H13B109.2
N3—C6—C7111.63 (15)H13A—C13—H13B107.9
N3—C6—H6A109.3O5—C14—C13106.00 (14)
C7—C6—H6A109.3O5—C14—H14A110.5
N3—C6—H6B109.3C13—C14—H14A110.5
C7—C6—H6B109.3O5—C14—H14B110.5
H6A—C6—H6B108.0C13—C14—H14B110.5
O2—C7—N2121.50 (16)H14A—C14—H14B108.7
O2—C7—C6120.82 (17)O5—C15—H15A109.5
N2—C7—C6117.59 (15)O5—C15—H15B109.5
N2—C8—C9113.43 (17)H15A—C15—H15B109.5
N2—C8—H8A108.9O5—C15—H15C109.5
C9—C8—H8A108.9H15A—C15—H15C109.5
N2—C8—H8B108.9H15B—C15—H15C109.5
C7—N2—C1—C276.1 (2)N3—C6—C7—N2168.51 (16)
C8—N2—C1—C2109.07 (19)C7—N2—C8—C9101.0 (2)
C11i—N1—C2—O1170.09 (19)C1—N2—C8—C973.2 (2)
C3—N1—C2—O112.7 (3)C10—O4—C9—C8176.38 (16)
C11i—N1—C2—C114.5 (3)N2—C8—C9—O467.8 (2)
C3—N1—C2—C1162.64 (17)C6—N3—C12—O3177.58 (16)
N2—C1—C2—O151.2 (3)C13—N3—C12—O39.3 (2)
N2—C1—C2—N1133.33 (18)C6—N3—C12—C111.7 (2)
C2—N1—C3—C4103.5 (2)C13—N3—C12—C11169.97 (14)
C11i—N1—C3—C479.1 (2)N1i—C11—C12—O32.8 (2)
C12—N3—C6—C770.2 (2)N1i—C11—C12—N3176.48 (14)
C13—N3—C6—C798.02 (18)C12—N3—C13—C1496.14 (19)
C8—N2—C7—O2177.07 (17)C6—N3—C13—C1495.13 (19)
C1—N2—C7—O28.6 (3)C15—O5—C14—C13176.0 (2)
C8—N2—C7—C66.4 (3)N3—C13—C14—O5179.14 (16)
C1—N2—C7—C6167.95 (16)C2—N1—C11i—C12i80.0 (2)
N3—C6—C7—O28.0 (3)
Symmetry code: (i) x+1, y, z.
 

Follow Acta Cryst. B
Sign up for e-alerts
Follow Acta Cryst. on Twitter
Follow us on facebook
Sign up for RSS feeds