The title compound, C5H9N3·3H2O, features an extensive network of hydrogen bonding, but is otherwise unexceptional. The structure was determined from data collected on a non-merohedrally twinned crystal.
Supporting information
CCDC reference: 647299
Key indicators
- Single-crystal X-ray study
- T = 100 K
- Mean (C-C) = 0.001 Å
- R factor = 0.049
- wR factor = 0.149
- Data-to-parameter ratio = 41.7
checkCIF/PLATON results
No syntax errors found
Datablock: 05adb19m
Alert level A
REFLT03_ALERT_3_A Reflection count > 15% excess reflns - sys abs data present?
From the CIF: _diffrn_reflns_theta_max 30.68
From the CIF: _diffrn_reflns_theta_full 30.68
From the CIF: _reflns_number_total 5341
TEST2: Reflns within _diffrn_reflns_theta_max
Count of symmetry unique reflns 2765
Completeness (_total/calc) 193.16%
| Author Response: The crystal under investigation was non-merohedrally
twinned with a BASF value of 0.1344(5) and the hklf 5 procedure was
used for the refinement (see _exptl_special_details for details).
The data were integrated using TWINSAINT, equivalent reflections were
merged in TWINABS, and all reflections having at least one contribution
from the major component had been used for the hklf 5 refinement. Due
to "twin pairing errors" (equivalent reflections being counted as
overlapping for one reflection, but as not overlaped for an eqivalent
one) the merging in TWINABS is incomplete, thus resulting in too many
independent reflections.
|
Alert level B
PLAT021_ALERT_1_B Ratio Unique / Expected Reflections too High ... 1.93
| Author Response: The crystal under investigation was non-merohedrally
twinned with a BASF value of 0.1344(5) and the hklf 5 procedure was
used for the refinement (see _exptl_special_details for details).
The data were integrated using TWINSAINT, equivalent reflections were
merged in TWINABS, and all reflections having at least one contribution
from the major component had been used for the hklf 5 refinement. Due
to "twin pairing errors" (equivalent reflections being counted as
overlapping for one reflection, but as not overlaped for an eqivalent
one) the merging in TWINABS is incomplete, thus resulting in too many
independent reflections.
|
1 ALERT level A = In general: serious problem
1 ALERT level B = Potentially serious problem
0 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
0 ALERT type 2 Indicator that the structure model may be wrong or deficient
1 ALERT type 3 Indicator that the structure quality may be low
0 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
Data collection: SMART (Bruker, 2003); cell refinement: SAINT-Plus (Bruker, 2003); data reduction: SAINT-Plus; program(s) used to solve structure: SIR2004 (Burla et al., 2005); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and Mercury (Macrae
et al., 2006); software used to prepare material for publication: WinGX (Farrugia, 1999) and publCIF (Westrip, 2007).
3,4,5-Trimethyl-1,2,4-triazole trihydrate
top
Crystal data top
C5H9N3·3H2O | F(000) = 360 |
Mr = 165.2 | Dx = 1.233 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 7270 reflections |
a = 10.0587 (4) Å | θ = 2.6–30.7° |
b = 6.5923 (2) Å | µ = 0.1 mm−1 |
c = 13.4209 (5) Å | T = 100 K |
β = 91.183 (1)° | Block, colourless |
V = 889.75 (6) Å3 | 0.38 × 0.36 × 0.23 mm |
Z = 4 | |
Data collection top
Bruker SMART APEX CCD diffractometer | 3958 reflections with I > 2σ(I) |
ω scans | Rint = 0 |
Absorption correction: multi-scan (SADABS in SAINT-Plus; Bruker, 2003) | θmax = 30.7°, θmin = 2.5° |
Tmin = 0.966, Tmax = 0.977 | h = −14→14 |
17695 measured reflections | k = 0→9 |
5341 independent reflections | l = 0→19 |
Refinement top
Refinement on F2 | 0 restraints |
Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
R[F2 > 2σ(F2)] = 0.049 | w = 1/[σ2(Fo2) + (0.1015P)2] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.149 | (Δ/σ)max < 0.001 |
S = 1.02 | Δρmax = 0.48 e Å−3 |
5341 reflections | Δρmin = −0.39 e Å−3 |
128 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. The crystals under investigation were found to be non-merohedrally twinned. A
crystal with only two well defined twin components was selected for the data
collection and its two components were identified using the program
GEMINI (Sparks, 1999), integrated using SAINT-Plus (Bruker,
2003) and merged and corrected for absorption using TWINABS (Bruker,
2003). 7284 data (2281 unique) involved component 1 only (mean I/σ
19.0), 7155 data (2243 unique) involved component 2 only (mean I/σ
7.4), and 3256 data (1230 unique) involved both components (mean I/σ
19.5). The structure was solved using the reflections of only component 1
using direct methods and was refined with reflections containing at least one
contribution of component 1 using the hklf 5 method. The twin operation
involves a 180 degree rotation, and the twin matrix was found to be 0.28746
0.00210 - 0.71298, 0.00195 - 0.99981 - 0.00024, -1.28592 - 0.00555 - 0.28824.
The BASF factor refined to 0.1350 (6). |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.63048 (7) | 0.15687 (10) | 0.23095 (5) | 0.01905 (16) | |
N2 | 0.73510 (7) | 0.15563 (10) | 0.16438 (5) | 0.02019 (16) | |
C3 | 0.84600 (8) | 0.15397 (11) | 0.21729 (6) | 0.01866 (17) | |
N4 | 0.81871 (6) | 0.15437 (10) | 0.31612 (5) | 0.01783 (16) | |
C5 | 0.68335 (8) | 0.15592 (11) | 0.32118 (6) | 0.01763 (17) | |
C6 | 0.98224 (9) | 0.15140 (13) | 0.17707 (7) | 0.0261 (2) | |
H6A | 0.9771 | 0.1462 | 0.1041 | 0.031* | |
H6B | 1.03 | 0.0318 | 0.2023 | 0.031* | |
H6C | 1.0297 | 0.2745 | 0.1982 | 0.031* | |
C7 | 0.91311 (9) | 0.15041 (14) | 0.39952 (7) | 0.0280 (2) | |
H7A | 0.8925 | 0.0363 | 0.4434 | 0.034* | |
H7B | 0.9072 | 0.2777 | 0.4369 | 0.034* | |
H7C | 1.0034 | 0.1346 | 0.3745 | 0.034* | |
C8 | 0.61061 (9) | 0.15678 (13) | 0.41608 (6) | 0.02398 (19) | |
H8A | 0.5147 | 0.1509 | 0.4018 | 0.029* | |
H8B | 0.6316 | 0.2813 | 0.4531 | 0.029* | |
H8C | 0.6374 | 0.0388 | 0.4561 | 0.029* | |
O1 | 0.76661 (7) | 0.44373 (11) | 0.85164 (5) | 0.02738 (16) | |
O2 | 0.63598 (6) | 0.81171 (9) | 0.83098 (5) | 0.02416 (16) | |
O3 | 0.72608 (8) | 0.09621 (11) | 0.95808 (5) | 0.03501 (19) | |
H1A | 0.7994 (13) | 0.406 (2) | 0.7918 (11) | 0.052 (4)* | |
H1B | 0.7267 (13) | 0.546 (2) | 0.8390 (10) | 0.048 (4)* | |
H2A | 0.5460 (13) | 0.8271 (17) | 0.8170 (9) | 0.041 (3)* | |
H2B | 0.6582 (11) | 0.9033 (18) | 0.8786 (9) | 0.033 (3)* | |
H3A | 0.7407 (13) | 0.221 (2) | 0.9294 (9) | 0.053 (4)* | |
H3B | 0.7076 (17) | 0.118 (2) | 1.0237 (14) | 0.081 (5)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0195 (3) | 0.0203 (3) | 0.0174 (3) | −0.0005 (2) | −0.0002 (2) | 0.0010 (2) |
N2 | 0.0230 (4) | 0.0212 (3) | 0.0164 (3) | −0.0001 (2) | 0.0008 (3) | 0.0009 (2) |
C3 | 0.0216 (4) | 0.0160 (3) | 0.0184 (4) | −0.0012 (3) | 0.0016 (3) | 0.0005 (3) |
N4 | 0.0178 (3) | 0.0187 (3) | 0.0170 (3) | −0.0004 (2) | −0.0012 (2) | −0.0005 (2) |
C5 | 0.0184 (4) | 0.0166 (3) | 0.0179 (4) | −0.0003 (3) | −0.0001 (3) | −0.0001 (3) |
C6 | 0.0227 (4) | 0.0279 (4) | 0.0278 (4) | −0.0007 (3) | 0.0058 (3) | −0.0002 (3) |
C7 | 0.0231 (4) | 0.0393 (5) | 0.0213 (4) | 0.0022 (3) | −0.0063 (3) | −0.0028 (3) |
C8 | 0.0242 (4) | 0.0292 (4) | 0.0187 (4) | −0.0007 (3) | 0.0030 (3) | 0.0009 (3) |
O1 | 0.0315 (3) | 0.0277 (3) | 0.0230 (3) | 0.0034 (3) | 0.0016 (2) | 0.0033 (2) |
O2 | 0.0228 (3) | 0.0258 (3) | 0.0238 (3) | 0.0013 (2) | −0.0032 (2) | −0.0035 (2) |
O3 | 0.0596 (5) | 0.0273 (4) | 0.0179 (3) | −0.0080 (3) | −0.0035 (3) | −0.0004 (3) |
Geometric parameters (Å, º) top
N1—C5 | 1.3125 (11) | C7—H7B | 0.98 |
N1—N2 | 1.3945 (9) | C7—H7C | 0.98 |
N2—C3 | 1.3098 (11) | C8—H8A | 0.98 |
C3—N4 | 1.3601 (10) | C8—H8B | 0.98 |
C3—C6 | 1.4833 (11) | C8—H8C | 0.98 |
N4—C5 | 1.3646 (10) | O1—H1A | 0.908 (14) |
N4—C7 | 1.4530 (11) | O1—H1B | 0.800 (15) |
C5—C8 | 1.4819 (11) | O2—H2A | 0.926 (14) |
C6—H6A | 0.98 | O2—H2B | 0.904 (13) |
C6—H6B | 0.98 | O3—H3A | 0.923 (15) |
C6—H6C | 0.98 | O3—H3B | 0.915 (18) |
C7—H7A | 0.98 | | |
| | | |
C5—N1—N2 | 107.12 (7) | H6B—C6—H6C | 109.5 |
C3—N2—N1 | 107.35 (7) | N4—C7—H7A | 109.5 |
N2—C3—N4 | 109.99 (7) | N4—C7—H7B | 109.5 |
N2—C3—C6 | 125.85 (7) | H7A—C7—H7B | 109.5 |
N4—C3—C6 | 124.16 (8) | N4—C7—H7C | 109.5 |
C3—N4—C5 | 105.68 (7) | H7A—C7—H7C | 109.5 |
C3—N4—C7 | 127.54 (7) | H7B—C7—H7C | 109.5 |
C5—N4—C7 | 126.77 (7) | C5—C8—H8A | 109.5 |
N1—C5—N4 | 109.86 (7) | C5—C8—H8B | 109.5 |
N1—C5—C8 | 126.52 (7) | H8A—C8—H8B | 109.5 |
N4—C5—C8 | 123.62 (7) | C5—C8—H8C | 109.5 |
C3—C6—H6A | 109.5 | H8A—C8—H8C | 109.5 |
C3—C6—H6B | 109.5 | H8B—C8—H8C | 109.5 |
H6A—C6—H6B | 109.5 | H1A—O1—H1B | 103.3 (12) |
C3—C6—H6C | 109.5 | H2A—O2—H2B | 107.2 (10) |
H6A—C6—H6C | 109.5 | H3A—O3—H3B | 107.3 (12) |
| | | |
C5—N1—N2—C3 | 0.00 (8) | N2—N1—C5—N4 | 0.08 (8) |
N1—N2—C3—N4 | −0.09 (8) | N2—N1—C5—C8 | 179.96 (7) |
N1—N2—C3—C6 | 179.74 (7) | C3—N4—C5—N1 | −0.13 (8) |
N2—C3—N4—C5 | 0.13 (8) | C7—N4—C5—N1 | −179.17 (7) |
C6—C3—N4—C5 | −179.70 (7) | C3—N4—C5—C8 | 179.98 (7) |
N2—C3—N4—C7 | 179.17 (7) | C7—N4—C5—C8 | 0.94 (12) |
C6—C3—N4—C7 | −0.66 (12) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2B···O3i | 0.904 (13) | 1.786 (13) | 2.6804 (9) | 169.6 (10) |
O3—H3A···O1 | 0.923 (15) | 1.822 (14) | 2.7349 (10) | 169.7 (12) |
O2—H2A···N1ii | 0.926 (14) | 1.878 (14) | 2.7974 (10) | 171.2 (11) |
O1—H1A···O2iii | 0.908 (14) | 1.890 (15) | 2.7971 (9) | 176.4 (13) |
O3—H3B···N2iv | 0.915 (18) | 1.92 (2) | 2.7959 (10) | 159.9 (16) |
O1—H1B···O2 | 0.800 (15) | 1.978 (15) | 2.7700 (9) | 170.3 (14) |
Symmetry codes: (i) x, y+1, z; (ii) −x+1, −y+1, −z+1; (iii) −x+3/2, y−1/2, −z+3/2; (iv) x, y, z+1. |