The present study evaluates the potential combination of charge-transfer electron-donor–acceptor π–π complexation and C—H hydrogen bonding to form colored cocrystals. The crystal structures of the red 1:1 cocrystals formed from the isomeric pyridines 4- and 3-{2-[4-(dimethylamino)phenyl]ethynyl}pyridine with 1-[2-(3,5-dinitrophenyl)ethynyl]-2,3,5,6-tetrafluorobenzene, both C14H4F4N2O4·C15H14N2, are reported. Intermolecular interaction energy calculations confirm that π-stacking interactions dominate the intermolecular interactions within each crystal structure. The close contacts revealed by Hirshfeld surface calculations are predominantly C—H interactions with N, O, and F atoms.
Supporting information
CCDC references: 2247037; 2247036
Data collection: CrysAlis PRO (Rigaku OD, 2022) for (1); SMART (Bruker, 2014) for (2). Cell refinement: CrysAlis PRO (Rigaku OD, 2022) for (1); SMART (Bruker, 2014) for (2). Data reduction: CrysAlis PRO (Rigaku OD, 2022) for (1); SAINT (Bruker, 2014) for (2). For both structures, program(s) used to solve structure: SHELXT2018 (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2018 (Sheldrick, 2015b); molecular graphics: X-SEED (Barbour, 2020); software used to prepare material for publication: X-SEED (Barbour, 2020).
4-{2-[4-(Dimethylamino)phenyl]ethynyl}pyridine;
1-[2-(3,5-dinitrophenyl)ethynyl]-2,3,5,6-tetrafluorobenzene (1)
top
Crystal data top
C14H4F4N2O4·C15H14N2 | F(000) = 1152 |
Mr = 562.47 | Dx = 1.467 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 23.8353 (8) Å | Cell parameters from 4996 reflections |
b = 6.8067 (2) Å | θ = 2.6–26.0° |
c = 16.6103 (5) Å | µ = 0.12 mm−1 |
β = 109.104 (3)° | T = 100 K |
V = 2546.43 (14) Å3 | Cut block, red |
Z = 4 | 0.40 × 0.20 × 0.02 mm |
Data collection top
Rigaku XtaLAB Synergy Dualflex HyPix diffractometer | 6490 independent reflections |
Radiation source: micro-focus sealed X-ray tube, PhotonJet (Mo) X-ray Source | 4632 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.045 |
Detector resolution: 10.0000 pixels mm-1 | θmax = 30.1°, θmin = 2.5° |
ω scans | h = −32→30 |
Absorption correction: gaussian (CrysAlis PRO; Rigaku OD, 2022) | k = −8→9 |
Tmin = 0.734, Tmax = 1.000 | l = −21→22 |
50721 measured reflections | |
Refinement top
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.053 | H-atom parameters constrained |
wR(F2) = 0.147 | w = 1/[σ2(Fo2) + (0.0582P)2 + 1.7045P] where P = (Fo2 + 2Fc2)/3 |
S = 1.02 | (Δ/σ)max < 0.001 |
6490 reflections | Δρmax = 0.43 e Å−3 |
372 parameters | Δρmin = −0.33 e Å−3 |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
F1 | 0.28456 (5) | 0.8952 (2) | 0.56244 (9) | 0.0523 (3) | |
O1 | 0.16990 (7) | 0.8728 (3) | 0.02012 (10) | 0.0569 (4) | |
N1 | 0.56110 (8) | 0.8842 (3) | 0.77962 (11) | 0.0479 (5) | |
C1 | 0.66347 (9) | 0.9153 (3) | 0.86474 (11) | 0.0377 (4) | |
H1 | 0.703142 | 0.939993 | 0.866805 | 0.045* | |
F2 | 0.38279 (6) | 0.8967 (2) | 0.69917 (7) | 0.0542 (3) | |
O2 | 0.07428 (7) | 0.8889 (3) | −0.01819 (9) | 0.0622 (5) | |
N2 | 0.87535 (7) | 0.8433 (3) | 1.43508 (9) | 0.0374 (4) | |
C2 | 0.61747 (10) | 0.9154 (3) | 0.78774 (12) | 0.0456 (5) | |
H2 | 0.627064 | 0.939357 | 0.737419 | 0.055* | |
F3 | 0.49846 (5) | 0.7940 (2) | 0.52233 (9) | 0.0590 (4) | |
O3 | −0.02267 (7) | 0.8563 (4) | 0.19380 (11) | 0.0835 (8) | |
N3 | 0.12366 (8) | 0.8794 (3) | 0.03622 (10) | 0.0446 (4) | |
C3 | 0.54875 (9) | 0.8501 (3) | 0.85129 (14) | 0.0438 (5) | |
H3 | 0.508550 | 0.827434 | 0.847032 | 0.053* | |
F4 | 0.40060 (6) | 0.8014 (2) | 0.38489 (7) | 0.0545 (3) | |
O4 | 0.02756 (8) | 0.8887 (4) | 0.32412 (11) | 0.0803 (7) | |
N4 | 0.02398 (7) | 0.8720 (3) | 0.25021 (10) | 0.0388 (4) | |
C4 | 0.59125 (8) | 0.8459 (3) | 0.93119 (12) | 0.0364 (4) | |
H4 | 0.580164 | 0.821170 | 0.980224 | 0.044* | |
C5 | 0.65027 (8) | 0.8782 (3) | 0.93908 (11) | 0.0302 (4) | |
C6 | 0.69531 (8) | 0.8735 (3) | 1.02069 (11) | 0.0316 (4) | |
C7 | 0.73052 (8) | 0.8709 (3) | 1.09104 (11) | 0.0311 (4) | |
C8 | 0.76868 (7) | 0.8680 (2) | 1.17791 (10) | 0.0280 (3) | |
C9 | 0.74375 (8) | 0.8652 (3) | 1.24264 (11) | 0.0319 (4) | |
H9 | 0.701761 | 0.866569 | 1.228328 | 0.038* | |
C10 | 0.77861 (8) | 0.8605 (3) | 1.32728 (11) | 0.0325 (4) | |
H10 | 0.760409 | 0.859549 | 1.370321 | 0.039* | |
C11 | 0.84062 (7) | 0.8572 (3) | 1.35024 (10) | 0.0270 (3) | |
C12 | 0.86623 (7) | 0.8646 (2) | 1.28534 (10) | 0.0272 (3) | |
H12 | 0.908213 | 0.865951 | 1.299570 | 0.033* | |
C13 | 0.83073 (7) | 0.8699 (3) | 1.20077 (10) | 0.0280 (3) | |
H13 | 0.848688 | 0.875039 | 1.157496 | 0.034* | |
C14 | 0.84830 (9) | 0.8579 (3) | 1.50130 (11) | 0.0415 (5) | |
H14A | 0.828751 | 0.985830 | 1.497565 | 0.062* | |
H14B | 0.878988 | 0.844721 | 1.557196 | 0.062* | |
H14C | 0.818879 | 0.753012 | 1.493936 | 0.062* | |
C15 | 0.93842 (8) | 0.8670 (3) | 1.45946 (12) | 0.0404 (4) | |
H15A | 0.954801 | 0.767690 | 1.430668 | 0.061* | |
H15B | 0.956009 | 0.851147 | 1.521291 | 0.061* | |
H15C | 0.947599 | 0.998385 | 1.443099 | 0.061* | |
C16 | 0.33747 (8) | 0.8741 (3) | 0.55145 (12) | 0.0342 (4) | |
C17 | 0.38804 (9) | 0.8729 (3) | 0.62161 (11) | 0.0351 (4) | |
C18 | 0.44282 (8) | 0.8476 (3) | 0.61351 (12) | 0.0356 (4) | |
H18 | 0.477752 | 0.846873 | 0.661968 | 0.043* | |
C19 | 0.44556 (8) | 0.8234 (3) | 0.53314 (13) | 0.0372 (4) | |
C20 | 0.39544 (8) | 0.8263 (3) | 0.46219 (11) | 0.0354 (4) | |
C21 | 0.33970 (7) | 0.8529 (3) | 0.46970 (11) | 0.0313 (4) | |
C22 | 0.28676 (8) | 0.8556 (3) | 0.39792 (12) | 0.0363 (4) | |
C23 | 0.24107 (8) | 0.8576 (3) | 0.34014 (12) | 0.0368 (4) | |
C24 | 0.18501 (8) | 0.8612 (3) | 0.27323 (11) | 0.0313 (4) | |
C25 | 0.18202 (8) | 0.8654 (3) | 0.18809 (12) | 0.0328 (4) | |
H25 | 0.217176 | 0.862299 | 0.173019 | 0.039* | |
C26 | 0.12667 (8) | 0.8741 (3) | 0.12585 (11) | 0.0325 (4) | |
C27 | 0.07436 (8) | 0.8779 (3) | 0.14376 (10) | 0.0307 (4) | |
H27 | 0.036964 | 0.885664 | 0.099941 | 0.037* | |
C28 | 0.07892 (7) | 0.8700 (3) | 0.22857 (11) | 0.0292 (3) | |
C29 | 0.13262 (8) | 0.8613 (3) | 0.29382 (11) | 0.0316 (4) | |
H29 | 0.133930 | 0.855430 | 0.351555 | 0.038* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
F1 | 0.0337 (6) | 0.0577 (8) | 0.0685 (8) | 0.0075 (6) | 0.0209 (6) | −0.0085 (6) |
O1 | 0.0573 (10) | 0.0682 (11) | 0.0561 (9) | 0.0014 (8) | 0.0333 (8) | 0.0001 (8) |
N1 | 0.0459 (10) | 0.0446 (10) | 0.0386 (9) | 0.0085 (8) | −0.0062 (7) | −0.0064 (8) |
C1 | 0.0350 (9) | 0.0434 (11) | 0.0330 (9) | 0.0064 (8) | 0.0088 (7) | 0.0028 (8) |
F2 | 0.0701 (9) | 0.0547 (8) | 0.0378 (6) | 0.0059 (7) | 0.0175 (6) | −0.0106 (6) |
O2 | 0.0533 (9) | 0.0982 (15) | 0.0290 (7) | −0.0181 (9) | 0.0053 (7) | −0.0041 (8) |
N2 | 0.0308 (8) | 0.0565 (11) | 0.0235 (7) | 0.0034 (7) | 0.0071 (6) | 0.0009 (7) |
C2 | 0.0516 (12) | 0.0526 (13) | 0.0274 (9) | 0.0136 (10) | 0.0061 (8) | 0.0017 (8) |
F3 | 0.0284 (6) | 0.0817 (10) | 0.0686 (9) | 0.0057 (6) | 0.0183 (6) | 0.0109 (7) |
O3 | 0.0274 (8) | 0.173 (2) | 0.0483 (9) | −0.0018 (11) | 0.0095 (7) | −0.0078 (12) |
N3 | 0.0466 (10) | 0.0540 (11) | 0.0359 (9) | −0.0075 (8) | 0.0171 (7) | −0.0036 (8) |
C3 | 0.0333 (10) | 0.0366 (11) | 0.0523 (12) | −0.0003 (8) | 0.0016 (8) | −0.0037 (9) |
F4 | 0.0568 (8) | 0.0738 (9) | 0.0346 (6) | 0.0064 (7) | 0.0175 (5) | 0.0087 (6) |
O4 | 0.0555 (10) | 0.148 (2) | 0.0449 (9) | −0.0032 (12) | 0.0271 (8) | 0.0004 (11) |
N4 | 0.0359 (8) | 0.0431 (10) | 0.0388 (8) | 0.0022 (7) | 0.0142 (7) | 0.0031 (7) |
C4 | 0.0351 (9) | 0.0316 (10) | 0.0401 (10) | 0.0002 (8) | 0.0092 (8) | 0.0019 (8) |
C5 | 0.0339 (9) | 0.0225 (8) | 0.0291 (8) | 0.0013 (7) | 0.0035 (7) | 0.0003 (6) |
C6 | 0.0336 (9) | 0.0257 (9) | 0.0325 (9) | 0.0008 (7) | 0.0069 (7) | 0.0009 (7) |
C7 | 0.0341 (9) | 0.0239 (8) | 0.0313 (8) | 0.0008 (7) | 0.0054 (7) | −0.0008 (7) |
C8 | 0.0314 (8) | 0.0219 (8) | 0.0263 (8) | 0.0010 (7) | 0.0034 (6) | −0.0001 (6) |
C9 | 0.0265 (8) | 0.0333 (9) | 0.0340 (9) | 0.0006 (7) | 0.0073 (7) | −0.0007 (7) |
C10 | 0.0304 (8) | 0.0399 (10) | 0.0293 (8) | 0.0011 (8) | 0.0125 (7) | −0.0002 (7) |
C11 | 0.0284 (8) | 0.0269 (8) | 0.0243 (7) | 0.0018 (7) | 0.0070 (6) | −0.0010 (6) |
C12 | 0.0262 (8) | 0.0274 (8) | 0.0274 (8) | 0.0010 (7) | 0.0079 (6) | 0.0005 (6) |
C13 | 0.0315 (8) | 0.0271 (8) | 0.0258 (8) | 0.0002 (7) | 0.0102 (6) | −0.0006 (6) |
C14 | 0.0427 (10) | 0.0547 (13) | 0.0267 (9) | 0.0001 (9) | 0.0109 (8) | 0.0008 (8) |
C15 | 0.0310 (9) | 0.0517 (12) | 0.0334 (9) | 0.0010 (9) | 0.0034 (7) | 0.0007 (8) |
C16 | 0.0268 (8) | 0.0279 (9) | 0.0471 (10) | 0.0020 (7) | 0.0110 (7) | −0.0039 (8) |
C17 | 0.0422 (10) | 0.0286 (9) | 0.0315 (9) | −0.0002 (8) | 0.0077 (7) | −0.0037 (7) |
C18 | 0.0307 (9) | 0.0296 (9) | 0.0367 (9) | −0.0012 (7) | −0.0023 (7) | 0.0005 (7) |
C19 | 0.0231 (8) | 0.0405 (11) | 0.0453 (10) | 0.0005 (7) | 0.0078 (7) | 0.0066 (8) |
C20 | 0.0351 (9) | 0.0379 (10) | 0.0313 (9) | 0.0007 (8) | 0.0080 (7) | 0.0054 (7) |
C21 | 0.0264 (8) | 0.0230 (8) | 0.0368 (9) | −0.0009 (7) | −0.0002 (7) | 0.0004 (7) |
C22 | 0.0331 (9) | 0.0234 (9) | 0.0430 (10) | −0.0008 (7) | −0.0004 (8) | 0.0004 (7) |
C23 | 0.0337 (9) | 0.0230 (9) | 0.0439 (10) | −0.0005 (7) | −0.0007 (8) | 0.0005 (7) |
C24 | 0.0301 (8) | 0.0204 (8) | 0.0352 (9) | −0.0014 (7) | −0.0006 (7) | −0.0010 (7) |
C25 | 0.0271 (8) | 0.0279 (9) | 0.0414 (10) | −0.0033 (7) | 0.0084 (7) | −0.0009 (7) |
C26 | 0.0347 (9) | 0.0336 (10) | 0.0274 (8) | −0.0049 (8) | 0.0076 (7) | −0.0015 (7) |
C27 | 0.0270 (8) | 0.0334 (9) | 0.0274 (8) | −0.0037 (7) | 0.0030 (6) | 0.0003 (7) |
C28 | 0.0282 (8) | 0.0269 (8) | 0.0309 (8) | −0.0008 (7) | 0.0075 (6) | −0.0009 (7) |
C29 | 0.0368 (9) | 0.0259 (9) | 0.0270 (8) | 0.0008 (7) | 0.0034 (7) | −0.0010 (7) |
Geometric parameters (Å, º) top
F1—C16 | 1.340 (2) | C10—H10 | 0.9500 |
O1—N3 | 1.217 (2) | C11—C12 | 1.403 (2) |
N1—C2 | 1.323 (3) | C12—C13 | 1.383 (2) |
N1—C3 | 1.337 (3) | C12—H12 | 0.9500 |
C1—C2 | 1.386 (3) | C13—H13 | 0.9500 |
C1—C5 | 1.393 (3) | C14—H14A | 0.9800 |
C1—H1 | 0.9500 | C14—H14B | 0.9800 |
F2—C17 | 1.344 (2) | C14—H14C | 0.9800 |
O2—N3 | 1.229 (2) | C15—H15A | 0.9800 |
N2—C11 | 1.384 (2) | C15—H15B | 0.9800 |
N2—C15 | 1.432 (2) | C15—H15C | 0.9800 |
N2—C14 | 1.449 (2) | C16—C17 | 1.375 (3) |
C2—H2 | 0.9500 | C16—C21 | 1.384 (3) |
F3—C19 | 1.345 (2) | C17—C18 | 1.367 (3) |
O3—N4 | 1.202 (2) | C18—C19 | 1.368 (3) |
N3—C26 | 1.467 (2) | C18—H18 | 0.9500 |
C3—C4 | 1.381 (3) | C19—C20 | 1.377 (3) |
C3—H3 | 0.9500 | C20—C21 | 1.386 (3) |
F4—C20 | 1.340 (2) | C21—C22 | 1.425 (2) |
O4—N4 | 1.208 (2) | C22—C23 | 1.193 (3) |
N4—C28 | 1.467 (2) | C23—C24 | 1.431 (2) |
C4—C5 | 1.387 (3) | C24—C25 | 1.393 (3) |
C4—H4 | 0.9500 | C24—C29 | 1.399 (3) |
C5—C6 | 1.428 (2) | C25—C26 | 1.386 (2) |
C6—C7 | 1.195 (2) | C25—H25 | 0.9500 |
C7—C8 | 1.432 (2) | C26—C27 | 1.374 (2) |
C8—C9 | 1.388 (2) | C27—C28 | 1.378 (2) |
C8—C13 | 1.402 (2) | C27—H27 | 0.9500 |
C9—C10 | 1.380 (2) | C28—C29 | 1.381 (2) |
C9—H9 | 0.9500 | C29—H29 | 0.9500 |
C10—C11 | 1.400 (2) | | |
| | | |
C2—N1—C3 | 116.71 (17) | N2—C14—H14C | 109.5 |
C2—C1—C5 | 118.57 (18) | H14A—C14—H14C | 109.5 |
C2—C1—H1 | 120.7 | H14B—C14—H14C | 109.5 |
C5—C1—H1 | 120.7 | N2—C15—H15A | 109.5 |
C11—N2—C15 | 120.18 (15) | N2—C15—H15B | 109.5 |
C11—N2—C14 | 120.10 (15) | H15A—C15—H15B | 109.5 |
C15—N2—C14 | 117.66 (15) | N2—C15—H15C | 109.5 |
N1—C2—C1 | 124.36 (19) | H15A—C15—H15C | 109.5 |
N1—C2—H2 | 117.8 | H15B—C15—H15C | 109.5 |
C1—C2—H2 | 117.8 | F1—C16—C17 | 119.21 (17) |
O1—N3—O2 | 123.95 (17) | F1—C16—C21 | 119.01 (16) |
O1—N3—C26 | 118.36 (17) | C17—C16—C21 | 121.77 (17) |
O2—N3—C26 | 117.68 (16) | F2—C17—C18 | 120.07 (17) |
N1—C3—C4 | 123.58 (19) | F2—C17—C16 | 118.74 (17) |
N1—C3—H3 | 118.2 | C18—C17—C16 | 121.18 (17) |
C4—C3—H3 | 118.2 | C17—C18—C19 | 117.63 (16) |
O3—N4—O4 | 122.72 (18) | C17—C18—H18 | 121.2 |
O3—N4—C28 | 118.72 (16) | C19—C18—H18 | 121.2 |
O4—N4—C28 | 118.56 (17) | F3—C19—C18 | 119.63 (16) |
C3—C4—C5 | 119.32 (19) | F3—C19—C20 | 118.46 (18) |
C3—C4—H4 | 120.3 | C18—C19—C20 | 121.91 (17) |
C5—C4—H4 | 120.3 | F4—C20—C19 | 119.49 (17) |
C4—C5—C1 | 117.46 (16) | F4—C20—C21 | 119.60 (16) |
C4—C5—C6 | 120.69 (17) | C19—C20—C21 | 120.90 (17) |
C1—C5—C6 | 121.85 (17) | C16—C21—C20 | 116.60 (15) |
C7—C6—C5 | 176.3 (2) | C16—C21—C22 | 120.80 (17) |
C6—C7—C8 | 175.3 (2) | C20—C21—C22 | 122.60 (17) |
C9—C8—C13 | 118.13 (15) | C23—C22—C21 | 177.2 (2) |
C9—C8—C7 | 119.27 (16) | C22—C23—C24 | 177.7 (2) |
C13—C8—C7 | 122.60 (16) | C25—C24—C29 | 119.69 (15) |
C10—C9—C8 | 121.45 (16) | C25—C24—C23 | 120.88 (17) |
C10—C9—H9 | 119.3 | C29—C24—C23 | 119.43 (17) |
C8—C9—H9 | 119.3 | C26—C25—C24 | 118.57 (17) |
C9—C10—C11 | 120.53 (16) | C26—C25—H25 | 120.7 |
C9—C10—H10 | 119.7 | C24—C25—H25 | 120.7 |
C11—C10—H10 | 119.7 | C27—C26—C25 | 123.32 (16) |
N2—C11—C10 | 120.31 (15) | C27—C26—N3 | 118.22 (16) |
N2—C11—C12 | 121.26 (15) | C25—C26—N3 | 118.46 (17) |
C10—C11—C12 | 118.42 (15) | C26—C27—C28 | 116.56 (16) |
C13—C12—C11 | 120.40 (15) | C26—C27—H27 | 121.7 |
C13—C12—H12 | 119.8 | C28—C27—H27 | 121.7 |
C11—C12—H12 | 119.8 | C27—C28—C29 | 123.14 (17) |
C12—C13—C8 | 121.03 (15) | C27—C28—N4 | 118.16 (15) |
C12—C13—H13 | 119.5 | C29—C28—N4 | 118.70 (15) |
C8—C13—H13 | 119.5 | C28—C29—C24 | 118.69 (16) |
N2—C14—H14A | 109.5 | C28—C29—H29 | 120.7 |
N2—C14—H14B | 109.5 | C24—C29—H29 | 120.7 |
H14A—C14—H14B | 109.5 | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2···F4i | 0.95 | 2.61 | 3.364 (2) | 137 |
C4—H4···F3ii | 0.95 | 2.41 | 3.207 (2) | 142 |
C10—H10···F1iii | 0.95 | 2.44 | 3.193 (2) | 136 |
C14—H14A···O1iv | 0.98 | 2.65 | 3.535 (3) | 150 |
C14—H14C···O1v | 0.98 | 2.62 | 3.334 (3) | 130 |
C18—H18···N1 | 0.95 | 2.30 | 3.245 (2) | 173 |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) x, −y+3/2, z+1/2; (iii) −x+1, −y+2, −z+2; (iv) −x+1, y+1/2, −z+3/2; (v) −x+1, y−1/2, −z+3/2. |
3-{2-[4-(Dimethylamino)phenyl]ethynyl}pyridine;
1-[2-(3,5-dinitrophenyl)ethynyl]-2,3,5,6-tetrafluorobenzene (2)
top
Crystal data top
C14H4F4N2O4·C15H14N2 | Dx = 1.488 Mg m−3 |
Mr = 562.47 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Pbcn | Cell parameters from 6048 reflections |
a = 13.131 (4) Å | θ = 2.2–24.9° |
b = 14.423 (4) Å | µ = 0.12 mm−1 |
c = 26.523 (7) Å | T = 100 K |
V = 5023 (2) Å3 | Cut block, red |
Z = 8 | 0.30 × 0.20 × 0.15 mm |
F(000) = 2304 | |
Data collection top
Bruker APEXI CCD diffractometer | 5554 independent reflections |
Radiation source: fine-focus sealed tube | 3976 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.077 |
Detector resolution: 8.3660 pixels mm-1 | θmax = 27.1°, θmin = 2.1° |
phi and ω scans | h = −16→16 |
Absorption correction: multi-scan (SADABS; Bruker, 2014) | k = −18→18 |
Tmin = 0.598, Tmax = 0.746 | l = −33→33 |
60342 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: dual |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.056 | H-atom parameters constrained |
wR(F2) = 0.154 | w = 1/[σ2(Fo2) + (0.0771P)2 + 2.8101P] where P = (Fo2 + 2Fc2)/3 |
S = 1.03 | (Δ/σ)max < 0.001 |
5554 reflections | Δρmax = 0.34 e Å−3 |
372 parameters | Δρmin = −0.27 e Å−3 |
0 restraints | |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
F1 | 0.38474 (11) | 0.41632 (9) | 0.43737 (5) | 0.0380 (4) | |
O1 | 0.31801 (13) | 0.97332 (11) | 0.54808 (6) | 0.0346 (4) | |
N1 | 0.39262 (14) | 0.40849 (12) | 0.60892 (7) | 0.0277 (4) | |
C1 | 0.40199 (16) | 0.35428 (14) | 0.56857 (8) | 0.0249 (4) | |
H1 | 0.404321 | 0.383090 | 0.536381 | 0.030* | |
F2 | 0.40359 (11) | 0.36309 (8) | 0.34049 (5) | 0.0370 (3) | |
O2 | 0.34149 (13) | 0.98327 (10) | 0.62884 (6) | 0.0332 (4) | |
N2 | 0.37851 (17) | −0.01111 (13) | 0.29567 (7) | 0.0367 (5) | |
C2 | 0.39061 (16) | 0.36700 (15) | 0.65390 (9) | 0.0282 (5) | |
H2 | 0.384300 | 0.404670 | 0.683118 | 0.034* | |
F3 | 0.35870 (10) | 0.67142 (9) | 0.28711 (5) | 0.0351 (3) | |
O3 | 0.36752 (18) | 0.70936 (13) | 0.72859 (7) | 0.0568 (6) | |
N3 | 0.33430 (14) | 0.93901 (12) | 0.58941 (7) | 0.0259 (4) | |
C3 | 0.39728 (17) | 0.27162 (16) | 0.66019 (9) | 0.0296 (5) | |
H3 | 0.396045 | 0.245202 | 0.692996 | 0.036* | |
F4 | 0.33985 (10) | 0.72583 (8) | 0.38375 (5) | 0.0312 (3) | |
O4 | 0.37845 (15) | 0.57505 (11) | 0.69379 (6) | 0.0419 (5) | |
N4 | 0.37037 (15) | 0.65946 (13) | 0.69135 (7) | 0.0300 (4) | |
C4 | 0.40574 (16) | 0.21554 (15) | 0.61807 (9) | 0.0279 (5) | |
H4 | 0.409481 | 0.150057 | 0.621452 | 0.034* | |
C5 | 0.40866 (16) | 0.25686 (14) | 0.57060 (8) | 0.0245 (4) | |
C6 | 0.41423 (16) | 0.20425 (14) | 0.52504 (9) | 0.0266 (5) | |
C7 | 0.41224 (16) | 0.16104 (14) | 0.48619 (9) | 0.0266 (5) | |
C8 | 0.40680 (15) | 0.11544 (14) | 0.43836 (8) | 0.0247 (4) | |
C9 | 0.40617 (16) | 0.01862 (14) | 0.43342 (8) | 0.0256 (5) | |
H9 | 0.412462 | −0.019045 | 0.462633 | 0.031* | |
C10 | 0.39657 (16) | −0.02264 (14) | 0.38683 (8) | 0.0265 (5) | |
H10 | 0.395229 | −0.088382 | 0.384679 | 0.032* | |
C11 | 0.38867 (16) | 0.03017 (15) | 0.34216 (8) | 0.0253 (5) | |
C12 | 0.39060 (16) | 0.12726 (15) | 0.34730 (9) | 0.0275 (5) | |
H12 | 0.385972 | 0.165304 | 0.318150 | 0.033* | |
C13 | 0.39914 (16) | 0.16776 (14) | 0.39422 (8) | 0.0269 (5) | |
H13 | 0.399829 | 0.233486 | 0.396587 | 0.032* | |
C14 | 0.3687 (2) | −0.11100 (16) | 0.29177 (9) | 0.0383 (6) | |
H14A | 0.308064 | −0.131321 | 0.310226 | 0.057* | |
H14B | 0.429238 | −0.140616 | 0.306219 | 0.057* | |
H14C | 0.362319 | −0.128576 | 0.256217 | 0.057* | |
C15 | 0.3625 (2) | 0.04253 (18) | 0.25039 (9) | 0.0384 (6) | |
H15A | 0.416917 | 0.088593 | 0.246992 | 0.058* | |
H15B | 0.296569 | 0.074181 | 0.252385 | 0.058* | |
H15C | 0.363092 | 0.001212 | 0.221055 | 0.058* | |
C16 | 0.37692 (17) | 0.48011 (15) | 0.40039 (8) | 0.0257 (5) | |
C17 | 0.38694 (17) | 0.45312 (14) | 0.35105 (8) | 0.0259 (5) | |
C18 | 0.38115 (16) | 0.51602 (15) | 0.31196 (8) | 0.0260 (5) | |
H18 | 0.388326 | 0.496944 | 0.277863 | 0.031* | |
C19 | 0.36461 (16) | 0.60723 (14) | 0.32426 (8) | 0.0247 (5) | |
C20 | 0.35458 (15) | 0.63559 (14) | 0.37361 (8) | 0.0243 (4) | |
C21 | 0.36105 (15) | 0.57272 (15) | 0.41342 (8) | 0.0230 (4) | |
C22 | 0.35608 (16) | 0.60451 (15) | 0.46421 (8) | 0.0246 (5) | |
C23 | 0.35522 (15) | 0.63854 (14) | 0.50532 (8) | 0.0241 (4) | |
C24 | 0.35445 (15) | 0.68955 (14) | 0.55165 (8) | 0.0230 (4) | |
C25 | 0.34476 (15) | 0.78594 (14) | 0.54866 (8) | 0.0222 (4) | |
H25 | 0.337937 | 0.815635 | 0.516863 | 0.027* | |
C26 | 0.34526 (15) | 0.83733 (14) | 0.59255 (8) | 0.0219 (4) | |
C27 | 0.35444 (15) | 0.79785 (14) | 0.63971 (8) | 0.0227 (4) | |
H27 | 0.354911 | 0.834366 | 0.669514 | 0.027* | |
C28 | 0.36292 (16) | 0.70242 (14) | 0.64131 (8) | 0.0230 (4) | |
C29 | 0.36315 (15) | 0.64641 (15) | 0.59890 (8) | 0.0237 (4) | |
H29 | 0.368998 | 0.580953 | 0.601686 | 0.028* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
F1 | 0.0628 (9) | 0.0243 (7) | 0.0268 (7) | 0.0032 (6) | −0.0021 (6) | 0.0041 (5) |
O1 | 0.0487 (10) | 0.0253 (8) | 0.0298 (9) | 0.0004 (7) | 0.0012 (7) | 0.0056 (7) |
N1 | 0.0263 (10) | 0.0220 (9) | 0.0347 (11) | −0.0017 (7) | −0.0006 (8) | −0.0041 (8) |
C1 | 0.0241 (10) | 0.0233 (10) | 0.0272 (11) | −0.0025 (8) | 0.0012 (9) | 0.0003 (9) |
F2 | 0.0609 (9) | 0.0185 (6) | 0.0316 (7) | 0.0055 (6) | −0.0031 (6) | −0.0035 (5) |
O2 | 0.0483 (10) | 0.0183 (7) | 0.0331 (9) | −0.0033 (7) | −0.0010 (7) | −0.0034 (7) |
N2 | 0.0605 (14) | 0.0261 (10) | 0.0234 (10) | 0.0054 (9) | 0.0015 (9) | −0.0002 (8) |
C2 | 0.0262 (11) | 0.0269 (11) | 0.0315 (12) | −0.0023 (9) | −0.0021 (9) | −0.0045 (9) |
F3 | 0.0536 (9) | 0.0235 (7) | 0.0284 (7) | 0.0001 (6) | −0.0021 (6) | 0.0048 (5) |
O3 | 0.1175 (19) | 0.0299 (9) | 0.0229 (9) | 0.0151 (10) | −0.0008 (10) | −0.0027 (7) |
N3 | 0.0301 (10) | 0.0204 (9) | 0.0272 (10) | −0.0038 (7) | 0.0008 (8) | 0.0010 (8) |
C3 | 0.0274 (11) | 0.0332 (12) | 0.0283 (12) | −0.0010 (9) | −0.0011 (9) | 0.0027 (9) |
F4 | 0.0406 (8) | 0.0183 (6) | 0.0347 (7) | 0.0013 (5) | 0.0000 (6) | −0.0034 (5) |
O4 | 0.0763 (13) | 0.0191 (8) | 0.0304 (9) | 0.0048 (8) | −0.0007 (9) | 0.0040 (7) |
N4 | 0.0433 (12) | 0.0224 (9) | 0.0242 (10) | 0.0052 (8) | 0.0021 (8) | 0.0009 (8) |
C4 | 0.0252 (11) | 0.0214 (10) | 0.0372 (13) | 0.0007 (8) | −0.0004 (9) | 0.0000 (9) |
C5 | 0.0195 (10) | 0.0237 (10) | 0.0303 (12) | −0.0010 (8) | −0.0005 (9) | −0.0043 (9) |
C6 | 0.0234 (11) | 0.0213 (10) | 0.0353 (13) | −0.0011 (8) | 0.0000 (9) | −0.0012 (9) |
C7 | 0.0219 (11) | 0.0215 (10) | 0.0363 (13) | −0.0017 (8) | 0.0005 (9) | −0.0002 (9) |
C8 | 0.0213 (10) | 0.0221 (10) | 0.0307 (12) | 0.0003 (8) | 0.0021 (9) | −0.0025 (9) |
C9 | 0.0287 (11) | 0.0227 (10) | 0.0254 (11) | 0.0014 (9) | 0.0029 (9) | 0.0030 (9) |
C10 | 0.0327 (12) | 0.0179 (10) | 0.0289 (12) | 0.0032 (9) | 0.0024 (9) | 0.0020 (9) |
C11 | 0.0257 (11) | 0.0257 (11) | 0.0245 (11) | 0.0025 (8) | 0.0045 (9) | −0.0004 (9) |
C12 | 0.0284 (11) | 0.0225 (10) | 0.0314 (12) | −0.0002 (9) | −0.0005 (9) | 0.0067 (9) |
C13 | 0.0259 (11) | 0.0174 (10) | 0.0373 (13) | −0.0013 (8) | −0.0003 (9) | 0.0007 (9) |
C14 | 0.0584 (17) | 0.0290 (12) | 0.0274 (12) | 0.0103 (11) | −0.0044 (11) | −0.0066 (10) |
C15 | 0.0481 (15) | 0.0419 (14) | 0.0253 (12) | 0.0069 (11) | 0.0016 (11) | 0.0038 (11) |
C16 | 0.0314 (11) | 0.0224 (10) | 0.0233 (11) | −0.0005 (9) | −0.0023 (9) | 0.0030 (9) |
C17 | 0.0311 (12) | 0.0178 (10) | 0.0288 (12) | 0.0020 (8) | −0.0024 (9) | −0.0025 (9) |
C18 | 0.0320 (12) | 0.0252 (11) | 0.0209 (10) | −0.0020 (9) | −0.0017 (9) | −0.0033 (9) |
C19 | 0.0272 (11) | 0.0218 (10) | 0.0251 (11) | −0.0009 (8) | −0.0032 (9) | 0.0032 (9) |
C20 | 0.0239 (11) | 0.0193 (10) | 0.0299 (11) | −0.0007 (8) | −0.0008 (9) | −0.0032 (9) |
C21 | 0.0209 (10) | 0.0254 (11) | 0.0226 (11) | −0.0006 (8) | −0.0021 (8) | −0.0023 (8) |
C22 | 0.0235 (11) | 0.0246 (10) | 0.0258 (12) | −0.0007 (8) | 0.0003 (8) | −0.0001 (9) |
C23 | 0.0224 (10) | 0.0237 (10) | 0.0263 (11) | −0.0010 (8) | 0.0016 (8) | 0.0016 (9) |
C24 | 0.0217 (10) | 0.0247 (10) | 0.0227 (11) | −0.0005 (8) | 0.0017 (8) | −0.0024 (8) |
C25 | 0.0200 (10) | 0.0254 (10) | 0.0213 (10) | −0.0017 (8) | 0.0006 (8) | 0.0019 (8) |
C26 | 0.0204 (10) | 0.0188 (10) | 0.0264 (11) | −0.0025 (8) | 0.0020 (8) | 0.0005 (8) |
C27 | 0.0223 (10) | 0.0229 (10) | 0.0229 (11) | −0.0008 (8) | 0.0014 (8) | −0.0027 (8) |
C28 | 0.0264 (10) | 0.0216 (10) | 0.0212 (11) | 0.0007 (8) | 0.0020 (8) | 0.0009 (8) |
C29 | 0.0246 (10) | 0.0207 (10) | 0.0258 (11) | 0.0013 (8) | 0.0014 (8) | −0.0024 (8) |
Geometric parameters (Å, º) top
F1—C16 | 1.349 (2) | C10—H10 | 0.9500 |
O1—N3 | 1.222 (2) | C11—C12 | 1.407 (3) |
N1—C1 | 1.331 (3) | C12—C13 | 1.379 (3) |
N1—C2 | 1.335 (3) | C12—H12 | 0.9500 |
C1—C5 | 1.409 (3) | C13—H13 | 0.9500 |
C1—H1 | 0.9500 | C14—H14A | 0.9800 |
F2—C17 | 1.346 (2) | C14—H14B | 0.9800 |
O2—N3 | 1.229 (2) | C14—H14C | 0.9800 |
N2—C11 | 1.376 (3) | C15—H15A | 0.9800 |
N2—C15 | 1.444 (3) | C15—H15B | 0.9800 |
N2—C14 | 1.450 (3) | C15—H15C | 0.9800 |
C2—C3 | 1.388 (3) | C16—C17 | 1.372 (3) |
C2—H2 | 0.9500 | C16—C21 | 1.395 (3) |
F3—C19 | 1.354 (2) | C17—C18 | 1.380 (3) |
O3—N4 | 1.223 (2) | C18—C19 | 1.373 (3) |
N3—C26 | 1.476 (3) | C18—H18 | 0.9500 |
C3—C4 | 1.384 (3) | C19—C20 | 1.378 (3) |
C3—H3 | 0.9500 | C20—C21 | 1.394 (3) |
F4—C20 | 1.343 (2) | C21—C22 | 1.424 (3) |
O4—N4 | 1.224 (2) | C22—C23 | 1.196 (3) |
N4—C28 | 1.468 (3) | C23—C24 | 1.432 (3) |
C4—C5 | 1.393 (3) | C24—C25 | 1.398 (3) |
C4—H4 | 0.9500 | C24—C29 | 1.404 (3) |
C5—C6 | 1.429 (3) | C25—C26 | 1.380 (3) |
C6—C7 | 1.204 (3) | C25—H25 | 0.9500 |
C7—C8 | 1.431 (3) | C26—C27 | 1.380 (3) |
C8—C13 | 1.396 (3) | C27—C28 | 1.381 (3) |
C8—C9 | 1.403 (3) | C27—H27 | 0.9500 |
C9—C10 | 1.377 (3) | C28—C29 | 1.385 (3) |
C9—H9 | 0.9500 | C29—H29 | 0.9500 |
C10—C11 | 1.412 (3) | | |
| | | |
C1—N1—C2 | 117.19 (19) | N2—C14—H14C | 109.5 |
N1—C1—C5 | 124.1 (2) | H14A—C14—H14C | 109.5 |
N1—C1—H1 | 117.9 | H14B—C14—H14C | 109.5 |
C5—C1—H1 | 117.9 | N2—C15—H15A | 109.5 |
C11—N2—C15 | 121.85 (19) | N2—C15—H15B | 109.5 |
C11—N2—C14 | 120.17 (19) | H15A—C15—H15B | 109.5 |
C15—N2—C14 | 117.4 (2) | N2—C15—H15C | 109.5 |
N1—C2—C3 | 123.4 (2) | H15A—C15—H15C | 109.5 |
N1—C2—H2 | 118.3 | H15B—C15—H15C | 109.5 |
C3—C2—H2 | 118.3 | F1—C16—C17 | 119.53 (19) |
O1—N3—O2 | 124.52 (18) | F1—C16—C21 | 118.96 (19) |
O1—N3—C26 | 118.06 (17) | C17—C16—C21 | 121.49 (19) |
O2—N3—C26 | 117.42 (17) | F2—C17—C16 | 119.19 (19) |
C4—C3—C2 | 119.2 (2) | F2—C17—C18 | 119.14 (19) |
C4—C3—H3 | 120.4 | C16—C17—C18 | 121.7 (2) |
C2—C3—H3 | 120.4 | C19—C18—C17 | 117.4 (2) |
O3—N4—O4 | 123.07 (19) | C19—C18—H18 | 121.3 |
O3—N4—C28 | 118.66 (18) | C17—C18—H18 | 121.3 |
O4—N4—C28 | 118.26 (18) | F3—C19—C18 | 119.44 (19) |
C3—C4—C5 | 118.8 (2) | F3—C19—C20 | 118.86 (18) |
C3—C4—H4 | 120.6 | C18—C19—C20 | 121.7 (2) |
C5—C4—H4 | 120.6 | F4—C20—C19 | 119.46 (19) |
C4—C5—C1 | 117.34 (19) | F4—C20—C21 | 119.16 (19) |
C4—C5—C6 | 122.59 (19) | C19—C20—C21 | 121.37 (19) |
C1—C5—C6 | 120.0 (2) | C20—C21—C16 | 116.36 (19) |
C7—C6—C5 | 175.7 (2) | C20—C21—C22 | 120.27 (19) |
C6—C7—C8 | 175.9 (2) | C16—C21—C22 | 123.3 (2) |
C13—C8—C9 | 117.3 (2) | C23—C22—C21 | 174.2 (2) |
C13—C8—C7 | 119.91 (19) | C22—C23—C24 | 173.3 (2) |
C9—C8—C7 | 122.7 (2) | C25—C24—C29 | 119.92 (19) |
C10—C9—C8 | 121.0 (2) | C25—C24—C23 | 117.56 (19) |
C10—C9—H9 | 119.5 | C29—C24—C23 | 122.52 (19) |
C8—C9—H9 | 119.5 | C26—C25—C24 | 119.05 (19) |
C9—C10—C11 | 121.75 (19) | C26—C25—H25 | 120.5 |
C9—C10—H10 | 119.1 | C24—C25—H25 | 120.5 |
C11—C10—H10 | 119.1 | C27—C26—C25 | 122.92 (19) |
N2—C11—C12 | 121.3 (2) | C27—C26—N3 | 118.03 (18) |
N2—C11—C10 | 121.70 (19) | C25—C26—N3 | 119.05 (19) |
C12—C11—C10 | 117.0 (2) | C26—C27—C28 | 116.51 (19) |
C13—C12—C11 | 120.7 (2) | C26—C27—H27 | 121.7 |
C13—C12—H12 | 119.7 | C28—C27—H27 | 121.7 |
C11—C12—H12 | 119.7 | C27—C28—C29 | 123.8 (2) |
C12—C13—C8 | 122.23 (19) | C27—C28—N4 | 116.99 (18) |
C12—C13—H13 | 118.9 | C29—C28—N4 | 119.20 (18) |
C8—C13—H13 | 118.9 | C28—C29—C24 | 117.79 (19) |
N2—C14—H14A | 109.5 | C28—C29—H29 | 121.1 |
N2—C14—H14B | 109.5 | C24—C29—H29 | 121.1 |
H14A—C14—H14B | 109.5 | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C29—H29···N1 | 0.95 | 2.51 | 3.463 (3) | 178 |
C2—H2···O4 | 0.95 | 2.47 | 3.186 (3) | 132 |
C15—H15C···O2i | 0.98 | 2.47 | 3.257 (3) | 137 |
C18—H18···O4i | 0.95 | 2.46 | 3.398 (3) | 168 |
Symmetry code: (i) x, −y+1, z−1/2. |
Intermolecular interaction energies between 4DMAPP and molecules closer
than 3.8 Å in cocrystal (1) (kJ mol-1); colors and labels are from
Fig. 7. topScale factors for total energy of interaction:
kele = 1.057,
kpol = 0.740,
kdis = 0.871 and
krep = 0.618. |
Color, label | Eele | Epol | Edis | Erep | Etot |
Red, R | -20.2 | -4.3 | -83.0 | 55.7 | -62.5 |
Orange, O | -20.8 | -4.3 | -86.7 | 65.3 | -60.4 |
Chartreuse, C | -18.4 | -5.7 | -8.5 | 0.0 | -31.0 |
Blue, B | -5.6 | -1.1 | -22.9 | 18.7 | -15.1 |
Pink, P | -4.8 | -1.2 | -21.2 | 16.1 | -14.6 |
Turquoise, T | -3.9 | -0.8 | -9.9 | 0.0 | -13.4 |
Green, G | -5.8 | -1.5 | -9.3 | 7.6 | -10.7 |
Selected hydrogen-bond and close-contact parameters (Å, °) for
cocrystal (2) topD—H···A | Labela | D—H | H···A | D···A | D—H···A |
C29—H29···N1 | A | 0.95 | 2.51 | 3.463 (3) | 177.5 |
C2—H2···O4 | B | 0.95 | 2.47 | 3.186 (3) | 131.6 |
C13—H13···F2 | C | 0.95 | 2.39 | 3.158 (3) | 137.7 |
C18—H18···O4i | D | 0.95 | 2.46 | 3.398 (3) | 168.1 |
C4—H4···O2ii | E | 0.95 | 2.46 | 3.398 (3) | 168.1 |
C9—H9···O1ii | F | 0.95 | 2.59 | 3.319 (3) | 134.2 |
C15—H15C···O2iii | G | 0.98 | 2.47 | 3.257 (3) | 136.8 |
C27—H27···C15iii | H | 0.95 | 2.79 | 3.398 (3) | 173.8 |
Note: (a) labels in Figs. 8 and 9.
Symmetry codes: (i) x, -y+1, z-1/2;
(ii) x, y-1, z;
(iii) x, -y+1, z-1/2. |
Intermolecular energies of interaction of 4DMAPP with molecules within
3.8 Å in cocrystal (2) in kJ mol-1; colors and labels are from
Fig. 10 topScale factors for total energy of interaction:
kele = 1.057,
kpol = 0.740,
kdis = 0.871 and
krep = 0.618. |
Color/label | Eele | Epol | Edis | Erep | Etot |
Blue, B | -18.9 | -5.3 | -92.7 | 71.3 | -60.6 |
Purple, P | -19.3 | -4.1 | -70.0 | 49.5 | -53.9 |
Chartreuse, C | -23.4 | -4.5 | -24.1 | 32.1 | -29.2 |
Green, G | -6.6 | -1.1 | -13.6 | 0.0 | -19.6 |
Red, R | -4.4 | -1.8 | -23.1 | 19.4 | -14.1 |