Download citation
Download citation
link to html
The crystal structures and packing features of two homologous Meyer's bicyclic lactams with fused pyrrolidone and medium-sized perhydro­pyrimidine rings, namely, 8a-phenyl-2,3,4,7,8,8a-hexa­hydro­pyrrolo­[1,2-a]pyrimidin-6(1H)-one, C13H16N2O (1), and 8a-(4-methyl­phen­yl)-2,3,4,7,8,8a-hexa­hydro­pyrrolo­[1,2-a]pyrimidin-6(1H)-one, C14H18N2O (2), were elucidated, and Hirshfeld surface plots were calculated and drawn for visualization and a deeper analysis of the inter­molecular noncovalent inter­actions. Mol­ecules of 1 and 2 are weakly linked by inter­molecular C=O...H—N hydrogen bonds into chains, which are in turn weakly linked by other C=O...H—Car inter­actions. The steric volume of the substituent significantly affects the crystal packing pattern.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S2053229620005409/ov3138sup1.cif
Contains datablocks 1, 2, global

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229620005409/ov31381sup2.hkl
Contains datablock 1

cdx

Chemdraw file https://doi.org/10.1107/S2053229620005409/ov31381sup4.cdx
Supplementary material

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229620005409/ov31382sup3.hkl
Contains datablock 2

cml

Chemical Markup Language (CML) file https://doi.org/10.1107/S2053229620005409/ov31381sup5.cml
Supplementary material

cml

Chemical Markup Language (CML) file https://doi.org/10.1107/S2053229620005409/ov31382sup6.cml
Supplementary material

CCDC references: 1980026; 1980027

Computing details top

Data collection: APEX2 (Bruker, 2014) for (1); CrysAlis PRO (Agilent, 2014) for (2). Cell refinement: SAINT (Bruker, 2014) for (1); CrysAlis PRO (Agilent, 2014) for (2). Data reduction: SAINT (Bruker, 2014) for (1); CrysAlis PRO (Agilent, 2014) for (2). Program(s) used to solve structure: SHELXT (Sheldrick, 2015a) for (1); SHELXS97 (Sheldrick, 2008) for (2). For both structures, program(s) used to refine structure: SHELXL2018 (Sheldrick, 2015b); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009).

8a-Phenyl-2,3,4,7,8,8a-hexahydropyrrolo[1,2-a]pyrimidin-6(1H)-one (1) top
Crystal data top
C13H16N2OF(000) = 464
Mr = 216.28Dx = 1.295 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 6.0910 (13) ÅCell parameters from 346 reflections
b = 17.016 (4) Åθ = 3–25°
c = 10.707 (2) ŵ = 0.08 mm1
β = 90.581 (5)°T = 120 K
V = 1109.6 (4) Å3Needle, clear colourless
Z = 40.3 × 0.11 × 0.09 mm
Data collection top
Bruker SMART APEXII
diffractometer
3456 measured reflections
Radiation source: microfocus sealed X-ray tube, Incoatec Iµs3456 independent reflections
Mirror optics monochromator2533 reflections with I > 2σ(I)
Detector resolution: 7.9 pixels mm-1θmax = 30.9°, θmin = 2.3°
ω scansh = 88
Absorption correction: multi-scan
(SADABS; Bruker, 2008)
k = 2424
Tmin = 0.609, Tmax = 0.746l = 1515
Refinement top
Refinement on F2Primary atom site location: dual
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.070H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.208 w = 1/[σ2(Fo2) + (0.1028P)2 + 0.8443P]
where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
3456 reflectionsΔρmax = 0.35 e Å3
264 parametersΔρmin = 0.35 e Å3
137 restraints
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. Refined as a 2-component twin. Twin law 1 0 0 0 -1 0 -0.036 0 -1 as determined with PLATON (Spek 2009).

The refinement was carried out using the SHELX software package version 2016/6 (Sheldrick, 2015).

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
C10.4836 (4)0.08090 (13)0.3214 (2)0.0152 (5)0.921 (4)
N10.5999 (4)0.11258 (18)0.2270 (2)0.0138 (5)0.921 (4)
O10.3219 (3)0.03783 (10)0.30857 (19)0.0206 (4)0.921 (4)
C20.5851 (5)0.10959 (18)0.4429 (3)0.0217 (6)0.921 (4)
H2A0.6024770.0657960.5030670.026*0.921 (4)
H2B0.4933380.1509760.4810550.026*0.921 (4)
N20.9784 (3)0.15293 (12)0.1970 (2)0.0166 (4)0.921 (4)
H21.035 (7)0.108 (3)0.228 (4)0.053 (13)*0.921 (4)
C30.8083 (5)0.14239 (15)0.4057 (2)0.0206 (5)0.921 (4)
H3A0.9242160.1019960.4151470.025*0.921 (4)
H3B0.8478120.1885160.4575810.025*0.921 (4)
C40.7790 (4)0.16616 (17)0.2675 (3)0.0144 (5)0.921 (4)
C50.9372 (4)0.14838 (15)0.0621 (3)0.0201 (5)0.921 (4)
H5A1.0771240.1372610.0193270.024*0.921 (4)
H5B0.8827440.1999120.0320930.024*0.921 (4)
C60.7698 (4)0.08480 (15)0.0273 (2)0.0199 (5)0.921 (4)
H6A0.7438440.0850660.0641640.024*0.921 (4)
H6B0.8278340.0325060.0511060.024*0.921 (4)
C70.5545 (4)0.09994 (15)0.0945 (2)0.0166 (5)0.921 (4)
H7A0.4812200.1468140.0585740.020*0.921 (4)
H7B0.4552390.0543240.0836460.020*0.921 (4)
C80.7093 (6)0.25260 (17)0.2538 (4)0.0145 (5)0.921 (4)
C90.4926 (5)0.27548 (15)0.2269 (4)0.0160 (5)0.921 (4)
H90.3812440.2369310.2159320.019*0.921 (4)
C100.4416 (4)0.35504 (14)0.2163 (3)0.0169 (5)0.921 (4)
H100.2947740.3706670.1988790.020*0.921 (4)
C110.6039 (6)0.41160 (19)0.2311 (4)0.0192 (7)0.921 (4)
H110.5691000.4656160.2202600.023*0.921 (4)
C120.8179 (7)0.3892 (2)0.2618 (6)0.0190 (10)0.921 (4)
H120.9277030.4279670.2758870.023*0.921 (4)
C130.8696 (5)0.30968 (17)0.2718 (4)0.0169 (6)0.921 (4)
H131.0159900.2943210.2911880.020*0.921 (4)
C1A0.491 (5)0.0814 (18)0.161 (3)0.030 (6)0.079 (4)
N1A0.590 (7)0.107 (3)0.266 (2)0.027 (6)0.079 (4)
O1A0.338 (4)0.0370 (15)0.176 (3)0.037 (6)0.079 (4)
C2A0.632 (5)0.103 (2)0.050 (3)0.031 (6)0.079 (4)
H2AA0.5476290.1358510.0093540.037*0.079 (4)
H2AB0.6785390.0543810.0057100.037*0.079 (4)
N2A0.973 (4)0.1564 (16)0.319 (2)0.024 (5)0.079 (4)
H2AC1.0415120.1120280.3031360.029*0.079 (4)
C3A0.831 (6)0.147 (2)0.099 (3)0.033 (7)0.079 (4)
H3AA0.8468980.1983290.0562340.040*0.079 (4)
H3AB0.9674450.1160880.0871030.040*0.079 (4)
C4A0.781 (5)0.158 (2)0.238 (3)0.021 (6)0.079 (4)
C5A0.918 (5)0.1543 (16)0.452 (2)0.024 (5)0.079 (4)
H5AA0.8713480.2074210.4785450.028*0.079 (4)
H5AB1.0503600.1399650.5009420.028*0.079 (4)
C6A0.735 (5)0.096 (2)0.481 (3)0.034 (6)0.079 (4)
H6AA0.7925120.0418380.4723480.041*0.079 (4)
H6AB0.6905510.1028880.5693460.041*0.079 (4)
C7A0.533 (5)0.105 (3)0.397 (3)0.028 (6)0.079 (4)
H7AA0.4310410.0606860.4125970.034*0.079 (4)
H7AB0.4556570.1542690.4192770.034*0.079 (4)
C8A0.709 (6)0.243 (2)0.247 (5)0.020*0.079 (4)
C9A0.497 (6)0.2717 (17)0.265 (3)0.009 (8)*0.079 (4)
H9A0.3810250.2345040.2727450.010*0.079 (4)
C10A0.444 (6)0.3511 (16)0.273 (3)0.026 (8)*0.079 (4)
H10A0.2942480.3641170.2858300.032*0.079 (4)
C11A0.590 (7)0.412 (3)0.262 (4)0.019 (12)*0.079 (4)
H11A0.5519840.4663780.2659310.022*0.079 (4)
C12A0.803 (10)0.384 (4)0.246 (7)0.05 (3)*0.079 (4)
H12A0.9187530.4210520.2400820.055*0.079 (4)
C13A0.855 (10)0.304 (3)0.237 (5)0.034 (17)*0.079 (4)
H13A1.0038340.2912090.2224220.041*0.079 (4)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C10.0170 (10)0.0079 (9)0.0207 (11)0.0008 (8)0.0029 (9)0.0017 (8)
N10.0157 (9)0.0100 (10)0.0158 (10)0.0029 (7)0.0014 (9)0.0022 (10)
O10.0172 (8)0.0127 (8)0.0320 (10)0.0027 (6)0.0021 (7)0.0029 (7)
C20.0312 (15)0.0178 (12)0.0160 (12)0.0041 (11)0.0013 (10)0.0004 (11)
N20.0144 (9)0.0119 (9)0.0236 (10)0.0006 (7)0.0014 (8)0.0007 (7)
C30.0269 (13)0.0160 (11)0.0189 (11)0.0044 (9)0.0045 (10)0.0021 (9)
C40.0156 (10)0.0092 (11)0.0184 (12)0.0020 (8)0.0032 (10)0.0012 (10)
C50.0180 (11)0.0199 (11)0.0224 (12)0.0005 (9)0.0050 (10)0.0000 (9)
C60.0211 (12)0.0191 (11)0.0195 (11)0.0014 (9)0.0034 (9)0.0038 (9)
C70.0171 (11)0.0158 (11)0.0169 (11)0.0012 (9)0.0013 (9)0.0025 (9)
C80.0151 (10)0.0093 (11)0.0191 (12)0.0005 (8)0.0011 (8)0.0011 (9)
C90.0163 (12)0.0150 (12)0.0166 (15)0.0009 (8)0.0017 (11)0.0016 (10)
C100.0178 (11)0.0159 (11)0.0170 (13)0.0036 (8)0.0012 (9)0.0001 (9)
C110.0230 (15)0.0121 (13)0.0224 (19)0.0031 (9)0.0039 (13)0.0015 (12)
C120.0194 (16)0.0089 (13)0.0288 (16)0.0029 (9)0.0013 (12)0.0011 (11)
C130.0145 (12)0.0126 (12)0.0237 (18)0.0014 (8)0.0004 (12)0.0005 (11)
C1A0.031 (12)0.022 (12)0.036 (9)0.003 (9)0.003 (8)0.004 (11)
N1A0.030 (10)0.022 (13)0.028 (7)0.002 (8)0.002 (7)0.003 (11)
O1A0.021 (10)0.028 (12)0.061 (16)0.000 (7)0.014 (9)0.008 (10)
C2A0.038 (13)0.024 (12)0.030 (8)0.002 (10)0.001 (8)0.015 (10)
N2A0.021 (7)0.023 (8)0.029 (7)0.011 (6)0.001 (5)0.007 (7)
C3A0.038 (14)0.037 (16)0.026 (7)0.008 (11)0.003 (7)0.004 (11)
C4A0.026 (8)0.013 (10)0.025 (7)0.003 (6)0.000 (5)0.003 (7)
C5A0.030 (11)0.014 (11)0.026 (6)0.003 (8)0.002 (7)0.004 (10)
C6A0.029 (11)0.043 (14)0.030 (9)0.011 (9)0.008 (8)0.001 (11)
C7A0.022 (10)0.031 (16)0.031 (8)0.006 (10)0.001 (8)0.006 (12)
Geometric parameters (Å, º) top
C1—N11.353 (3)C1A—N1A1.339 (19)
C1—O11.234 (3)C1A—O1A1.213 (19)
C1—C21.515 (4)C1A—C2A1.52 (2)
N1—C41.483 (3)N1A—C4A1.485 (19)
N1—C71.458 (3)N1A—C7A1.45 (2)
C2—H2A0.9900C2A—H2AA0.9900
C2—H2B0.9900C2A—H2AB0.9900
C2—C31.526 (4)C2A—C3A1.52 (2)
N2—H20.90 (5)N2A—H2AC0.8805
N2—C41.454 (4)N2A—C4A1.453 (19)
N2—C51.466 (4)N2A—C5A1.465 (19)
C3—H3A0.9900C3A—H3AA0.9900
C3—H3B0.9900C3A—H3AB0.9900
C3—C41.542 (4)C3A—C4A1.54 (2)
C4—C81.538 (3)C4A—C8A1.525 (19)
C5—H5A0.9900C5A—H5AA0.9900
C5—H5B0.9900C5A—H5AB0.9900
C5—C61.530 (4)C5A—C6A1.527 (19)
C6—H6A0.9900C6A—H6AA0.9900
C6—H6B0.9900C6A—H6AB0.9900
C6—C71.524 (4)C6A—C7A1.52 (2)
C7—H7A0.9900C7A—H7AA0.9900
C7—H7B0.9900C7A—H7AB0.9900
C8—C91.403 (4)C8A—C9A1.394 (19)
C8—C131.389 (4)C8A—C13A1.37 (2)
C9—H90.9500C9A—H9A0.9500
C9—C101.393 (3)C9A—C10A1.391 (19)
C10—H100.9500C10A—H10A0.9500
C10—C111.387 (4)C10A—C11A1.378 (19)
C11—H110.9500C11A—H11A0.9500
C11—C121.394 (5)C11A—C12A1.39 (2)
C12—H120.9500C12A—H12A0.9500
C12—C131.394 (3)C12A—C13A1.40 (2)
C13—H130.9500C13A—H13A0.9500
N1—C1—C2107.5 (2)N1A—C1A—C2A109 (2)
O1—C1—N1125.2 (2)O1A—C1A—N1A115 (3)
O1—C1—C2127.3 (2)O1A—C1A—C2A134 (3)
C1—N1—C4114.6 (2)C1A—N1A—C4A111 (2)
C1—N1—C7124.9 (2)C1A—N1A—C7A134 (3)
C7—N1—C4120.4 (2)C7A—N1A—C4A114 (3)
C1—C2—H2A110.8C1A—C2A—H2AA110.2
C1—C2—H2B110.8C1A—C2A—H2AB110.2
C1—C2—C3104.5 (2)C1A—C2A—C3A108 (2)
H2A—C2—H2B108.9H2AA—C2A—H2AB108.5
C3—C2—H2A110.8C3A—C2A—H2AA110.2
C3—C2—H2B110.8C3A—C2A—H2AB110.2
C4—N2—H2105 (3)C4A—N2A—H2AC106.1
C4—N2—C5112.6 (2)C4A—N2A—C5A113 (2)
C5—N2—H2112 (3)C5A—N2A—H2AC106.4
C2—C3—H3A110.8C2A—C3A—H3AA111.2
C2—C3—H3B110.8C2A—C3A—H3AB111.2
C2—C3—C4104.6 (2)C2A—C3A—C4A103 (2)
H3A—C3—H3B108.9H3AA—C3A—H3AB109.1
C4—C3—H3A110.8C4A—C3A—H3AA111.2
C4—C3—H3B110.8C4A—C3A—H3AB111.2
N1—C4—C3101.3 (2)N1A—C4A—C3A107 (2)
N1—C4—C8111.0 (3)N1A—C4A—C8A109 (3)
N2—C4—N1111.6 (2)N2A—C4A—N1A120 (3)
N2—C4—C3111.6 (2)N2A—C4A—C3A114 (3)
N2—C4—C8109.3 (2)N2A—C4A—C8A102 (3)
C8—C4—C3111.8 (3)C8A—C4A—C3A104 (3)
N2—C5—H5A109.1N2A—C5A—H5AA109.0
N2—C5—H5B109.1N2A—C5A—H5AB109.0
N2—C5—C6112.6 (2)N2A—C5A—C6A113 (3)
H5A—C5—H5B107.8H5AA—C5A—H5AB107.8
C6—C5—H5A109.1C6A—C5A—H5AA109.0
C6—C5—H5B109.1C6A—C5A—H5AB109.0
C5—C6—H6A109.7C5A—C6A—H6AA108.9
C5—C6—H6B109.7C5A—C6A—H6AB108.9
H6A—C6—H6B108.2H6AA—C6A—H6AB107.7
C7—C6—C5109.9 (2)C7A—C6A—C5A114 (3)
C7—C6—H6A109.7C7A—C6A—H6AA108.9
C7—C6—H6B109.7C7A—C6A—H6AB108.9
N1—C7—C6109.2 (2)N1A—C7A—C6A112 (3)
N1—C7—H7A109.8N1A—C7A—H7AA109.2
N1—C7—H7B109.8N1A—C7A—H7AB109.2
C6—C7—H7A109.8C6A—C7A—H7AA109.2
C6—C7—H7B109.8C6A—C7A—H7AB109.2
H7A—C7—H7B108.3H7AA—C7A—H7AB107.9
C9—C8—C4122.9 (3)C9A—C8A—C4A127 (4)
C13—C8—C4117.5 (3)C13A—C8A—C4A122 (4)
C13—C8—C9119.5 (3)C13A—C8A—C9A111 (4)
C8—C9—H9120.2C8A—C9A—H9A118.0
C10—C9—C8119.6 (3)C10A—C9A—C8A124 (3)
C10—C9—H9120.2C10A—C9A—H9A118.0
C9—C10—H10119.8C9A—C10A—H10A117.3
C11—C10—C9120.5 (3)C11A—C10A—C9A125 (4)
C11—C10—H10119.8C11A—C10A—H10A117.3
C10—C11—H11120.0C10A—C11A—H11A124.7
C10—C11—C12120.0 (3)C10A—C11A—C12A111 (5)
C12—C11—H11120.0C12A—C11A—H11A124.7
C11—C12—H12120.2C11A—C12A—H12A118.1
C13—C12—C11119.6 (4)C11A—C12A—C13A124 (7)
C13—C12—H12120.2C13A—C12A—H12A118.1
C8—C13—C12120.7 (4)C8A—C13A—C12A126 (6)
C8—C13—H13119.7C8A—C13A—H13A117.2
C12—C13—H13119.7C12A—C13A—H13A117.2
C1—N1—C4—N2137.1 (3)C1A—N1A—C4A—N2A146 (4)
C1—N1—C4—C318.2 (3)C1A—N1A—C4A—C3A14 (5)
C1—N1—C4—C8100.7 (3)C1A—N1A—C4A—C8A98 (4)
C1—N1—C7—C6136.0 (3)C1A—N1A—C7A—C6A146 (6)
C1—C2—C3—C425.7 (3)C1A—C2A—C3A—C4A6 (4)
N1—C1—C2—C315.2 (3)N1A—C1A—C2A—C3A1 (5)
N1—C4—C8—C910.0 (5)N1A—C4A—C8A—C9A7 (5)
N1—C4—C8—C13171.4 (3)N1A—C4A—C8A—C13A174 (3)
O1—C1—N1—C4176.5 (2)O1A—C1A—N1A—C4A177 (3)
O1—C1—N1—C70.9 (5)O1A—C1A—N1A—C7A13 (8)
O1—C1—C2—C3166.2 (2)O1A—C1A—C2A—C3A166 (4)
C2—C1—N1—C42.2 (3)C2A—C1A—N1A—C4A9 (5)
C2—C1—N1—C7179.6 (3)C2A—C1A—N1A—C7A178 (5)
C2—C3—C4—N126.0 (3)C2A—C3A—C4A—N1A12 (4)
C2—C3—C4—N2145.0 (2)C2A—C3A—C4A—N2A147 (3)
C2—C3—C4—C892.2 (3)C2A—C3A—C4A—C8A103 (3)
N2—C4—C8—C9133.6 (4)N2A—C4A—C8A—C9A134 (4)
N2—C4—C8—C1347.9 (4)N2A—C4A—C8A—C13A47 (5)
N2—C5—C6—C757.6 (3)N2A—C5A—C6A—C7A50 (4)
C3—C4—C8—C9102.4 (4)C3A—C4A—C8A—C9A107 (4)
C3—C4—C8—C1376.2 (4)C3A—C4A—C8A—C13A72 (4)
C4—N1—C7—C646.7 (4)C4A—N1A—C7A—C6A45 (5)
C4—N2—C5—C656.5 (3)C4A—N2A—C5A—C6A44 (4)
C4—C8—C9—C10179.7 (3)C4A—C8A—C9A—C10A180 (5)
C4—C8—C13—C12179.5 (4)C4A—C8A—C13A—C12A179 (5)
C5—N2—C4—N147.4 (3)C5A—N2A—C4A—N1A42 (4)
C5—N2—C4—C3160.1 (2)C5A—N2A—C4A—C3A171 (3)
C5—N2—C4—C875.7 (3)C5A—N2A—C4A—C8A78 (3)
C5—C6—C7—N149.9 (3)C5A—C6A—C7A—N1A50 (5)
C7—N1—C4—N245.3 (4)C7A—N1A—C4A—N2A43 (5)
C7—N1—C4—C3164.3 (3)C7A—N1A—C4A—C3A175 (4)
C7—N1—C4—C876.9 (4)C7A—N1A—C4A—C8A74 (5)
C8—C9—C10—C110.6 (6)C8A—C9A—C10A—C11A1 (3)
C9—C8—C13—C120.9 (7)C9A—C8A—C13A—C12A1 (6)
C9—C10—C11—C122.7 (6)C9A—C10A—C11A—C12A1 (5)
C10—C11—C12—C133.0 (8)C10A—C11A—C12A—C13A2 (7)
C11—C12—C13—C81.2 (8)C11A—C12A—C13A—C8A2 (9)
C13—C8—C9—C101.2 (6)C13A—C8A—C9A—C10A1 (3)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N2—H2···O1i0.90 (5)2.28 (5)3.097 (3)151 (4)
Symmetry code: (i) x+1, y, z.
8a-(4-Methylphenyl)-2,3,4,7,8,8a-hexahydropyrrolo[1,2-a]pyrimidin-6(1H)-one (2) top
Crystal data top
C14H18N2OF(000) = 496
Mr = 230.30Dx = 1.256 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 10.143 (2) ÅCell parameters from 2097 reflections
b = 11.703 (3) Åθ = 3.7–28.2°
c = 10.776 (3) ŵ = 0.08 mm1
β = 107.84 (3)°T = 295 K
V = 1217.7 (6) Å3Block, clear colourless
Z = 40.5 × 0.45 × 0.3 mm
Data collection top
Agilent Xcalibur Ruby
diffractometer
2848 independent reflections
Radiation source: Enhance (Mo) X-ray Source2191 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
Detector resolution: 10.4752 pixels mm-1θmax = 29.4°, θmin = 3.0°
ω scansh = 128
Absorption correction: multi-scan
(CrysAlis PRO; Agilent, 2014)
k = 1414
Tmin = 0.601, Tmax = 1.000l = 1213
5980 measured reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.050H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.135 w = 1/[σ2(Fo2) + (0.0635P)2 + 0.2084P]
where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
2848 reflectionsΔρmax = 0.24 e Å3
159 parametersΔρmin = 0.24 e Å3
0 restraints
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O10.70057 (11)0.12818 (10)0.80679 (12)0.0507 (3)
N10.59664 (11)0.30192 (10)0.80043 (11)0.0311 (3)
N20.55037 (12)0.49806 (11)0.72902 (12)0.0365 (3)
H10.6249 (18)0.5054 (15)0.7026 (17)0.048 (5)*
C10.62698 (13)0.20578 (13)0.74720 (15)0.0353 (3)
C20.55360 (16)0.21083 (15)0.60237 (16)0.0469 (4)
H2A0.4728490.1615300.5788990.056*
H2B0.6150120.1876780.5534290.056*
C30.51168 (15)0.33512 (15)0.57597 (14)0.0411 (4)
H3A0.4228280.3414470.5089110.049*
H3B0.5803600.3770300.5484010.049*
C40.50283 (13)0.38078 (12)0.70756 (13)0.0300 (3)
C50.58799 (15)0.53061 (13)0.86624 (16)0.0415 (4)
H5A0.5053540.5300920.8935970.050*
H5B0.6238500.6080290.8757650.050*
C60.69547 (16)0.45218 (14)0.95521 (15)0.0424 (4)
H6A0.7817440.4579890.9344100.051*
H6B0.7127830.4755371.0451660.051*
C70.64502 (15)0.32973 (14)0.93868 (14)0.0385 (4)
H7A0.7197970.2787140.9835610.046*
H7B0.5701580.3201830.9762190.046*
C80.35515 (13)0.37256 (12)0.71721 (13)0.0292 (3)
C90.30920 (15)0.28178 (13)0.77474 (16)0.0380 (4)
H90.3706590.2237040.8133880.046*
C100.17292 (16)0.27566 (14)0.77592 (17)0.0434 (4)
H100.1448060.2132740.8149700.052*
C110.07854 (14)0.35979 (13)0.72063 (16)0.0395 (4)
C120.12425 (15)0.45027 (13)0.66201 (16)0.0413 (4)
H120.0625860.5083030.6236500.050*
C130.25920 (14)0.45645 (13)0.65909 (15)0.0370 (4)
H130.2862850.5177180.6175840.044*
C140.07029 (17)0.35342 (17)0.7210 (2)0.0644 (6)
H14A0.0971030.4256180.7480900.097*
H14B0.0790590.2948550.7803830.097*
H14C0.1291470.3357390.6348710.097*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.0431 (6)0.0424 (7)0.0636 (8)0.0144 (5)0.0119 (5)0.0004 (6)
N10.0266 (6)0.0343 (7)0.0313 (6)0.0050 (5)0.0070 (4)0.0008 (5)
N20.0315 (6)0.0356 (7)0.0436 (7)0.0044 (5)0.0134 (5)0.0057 (6)
C10.0235 (7)0.0372 (8)0.0460 (8)0.0004 (6)0.0118 (6)0.0038 (7)
C20.0378 (8)0.0551 (11)0.0455 (9)0.0031 (7)0.0094 (7)0.0153 (8)
C30.0353 (8)0.0572 (10)0.0316 (8)0.0004 (7)0.0115 (6)0.0010 (7)
C40.0259 (7)0.0326 (8)0.0307 (7)0.0011 (5)0.0077 (5)0.0049 (6)
C50.0372 (8)0.0346 (8)0.0518 (9)0.0048 (6)0.0121 (7)0.0051 (7)
C60.0354 (8)0.0494 (10)0.0387 (8)0.0016 (7)0.0059 (6)0.0093 (7)
C70.0373 (8)0.0454 (9)0.0303 (7)0.0091 (6)0.0067 (6)0.0021 (7)
C80.0272 (7)0.0293 (7)0.0302 (7)0.0002 (5)0.0074 (5)0.0001 (6)
C90.0334 (8)0.0316 (8)0.0514 (9)0.0066 (6)0.0164 (6)0.0095 (7)
C100.0410 (9)0.0356 (9)0.0599 (10)0.0012 (7)0.0248 (7)0.0072 (8)
C110.0304 (7)0.0363 (8)0.0539 (9)0.0023 (6)0.0160 (6)0.0082 (7)
C120.0303 (8)0.0342 (8)0.0544 (10)0.0050 (6)0.0054 (6)0.0011 (7)
C130.0322 (8)0.0318 (8)0.0445 (8)0.0004 (6)0.0079 (6)0.0084 (7)
C140.0366 (9)0.0560 (12)0.1085 (17)0.0010 (8)0.0339 (10)0.0055 (11)
Geometric parameters (Å, º) top
O1—C11.2250 (18)C7—C61.514 (2)
N1—C11.3409 (18)C8—C41.5360 (18)
N1—C41.4749 (17)C8—C91.381 (2)
N1—C71.4554 (18)C8—C131.3892 (19)
N2—C51.460 (2)C9—C101.388 (2)
C1—C21.510 (2)C11—C101.375 (2)
C3—C21.518 (2)C11—C121.384 (2)
C4—N21.4497 (19)C11—C141.513 (2)
C4—C31.543 (2)C13—C121.381 (2)
C6—C51.520 (2)
C1—N1—C4114.82 (12)C8—C4—C3111.90 (11)
C1—N1—C7125.17 (12)N2—C5—C6113.31 (13)
C7—N1—C4119.98 (11)C7—C6—C5110.26 (12)
C4—N2—C5112.31 (12)N1—C7—C6109.15 (12)
O1—C1—N1125.50 (14)C9—C8—C4123.29 (12)
O1—C1—C2126.79 (14)C9—C8—C13117.38 (12)
N1—C1—C2107.70 (12)C13—C8—C4119.23 (12)
C1—C2—C3104.61 (12)C8—C9—C10121.18 (13)
C2—C3—C4104.56 (12)C11—C10—C9121.47 (14)
N1—C4—C3101.52 (11)C10—C11—C12117.36 (13)
N1—C4—C8110.77 (11)C10—C11—C14121.75 (15)
N2—C4—N1111.74 (11)C12—C11—C14120.88 (14)
N2—C4—C3111.36 (12)C13—C12—C11121.58 (13)
N2—C4—C8109.39 (11)C12—C13—C8121.01 (13)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N2—H1···O1i0.890 (18)2.306 (18)3.0737 (17)144.4 (15)
Symmetry code: (i) x+3/2, y+1/2, z+3/2.
Calculated hydrogen-bond geometry (Å, °) and energy (kcal mol-1) top
Ph is phenyl and p-Tol is p-tolyl or 4-methylphenyl.
FunctionalRD—HH···AD···AD—H···AEnergy
MPWB95Ph1.0272.1253.090155.631.06
MPWB95p-Tol-----
WB97XDPh1.0182.0342.975152.528.53
WB97XDp-Tol-----
M06-2XPh1.0192.0823.028153.826.45
M06-2Xp-Tol1.0172.0582.977148.835.56
B97-D3Ph1.0222.0693.018153.637.59
B97-D3p-Tol1.0202.0363.056178.536.78
 

Follow Acta Cryst. C
Sign up for e-alerts
Follow Acta Cryst. on Twitter
Follow us on facebook
Sign up for RSS feeds