The title compounds, both C
23H
21ClN
2OS, are isomeric, with (I) and (II) being the
N-3-methylphenyl and
N-2-methylphenyl derivatives, respectively. The dihedral angle between the 4-chlorophenyl group and the thiophene ring in (II) [38.1 (1)°] is larger than that in (I) [7.1 (1)°], indicating steric repulsion between the chlorophenyl and
o-toluidine groups in (II). In both compounds, an intramolecular N-H
N hydrogen bond forms a pseudo-six-membered ring, thus locking the molecular conformation. In the crystal structures, molecules are connected
via N-H
O hydrogen bonds, forming chains along the
b axis in (I) and along the
c axis in (II). Intermolecular C-H
O/S and
-
interactions are also observed in (II), but not in (I).
Supporting information
CCDC references: 257008; 257009
The title compounds were synthesized using the Gewald reaction (Gewald et al., 1966). For compound (I), m-cyanotoluidine was refluxed with cyclohexanone in the presence of sulfur, dimethylamine and ethanol at 313–323 K for 1 h. The resulting product was then treated with 4-chlorobenzaldehyde in an equimolar ratio in the presence of ethanol, which yielded (I). This was then recrystallized from a solution of dichloromethane and ethylacetate (1:2) by slow evaporation. Yellow crystals of (I) were obtained after four weeks and used for single-crystal data collection. For compound (II), a similar procedure was followed using o-cyanotoluidine, and later 4-chlorobenzaldehyde was added. The compound was purified and crystallized using the same procedure as (I).
For both compounds, amino atom H2N and atom H9 (bonded to C9) were located from difference Fourier maps and refined isotropically. Other H atoms were constrained to ride on their parent atom, with C—H = 0.93–0.97 Å and with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(Cmethyl). The methyl groups were allowed to rotate freely about the C—C bond. In both compounds, the C6—C7 bond length is shorter than the expected value. These C atoms of the cyclohexene moiety have a large vibrational degree of freedom and this is reflected in the large atomic displacement parameters, resulting in the short C—C bond length.
For both compounds, data collection: SMART (Bruker, 1998); cell refinement: SMART; data reduction: SAINT (Bruker, 1998); program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and CAMERON (Watkin et al., 1993); software used to prepare material for publication: PLATON (Spek, 2003).
(I) 2-[(1E)-(4-Chlorophenyl)methyleneamino]-
N-(3-methylphenyl)-4,5,6,7- tetrahydro-1-benzothiophene-3-carboxamide
top
Crystal data top
C23H21ClN2OS | F(000) = 1712 |
Mr = 408.93 | Dx = 1.326 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 650 reflections |
a = 13.785 (11) Å | θ = 1.6–26.4° |
b = 8.554 (7) Å | µ = 0.31 mm−1 |
c = 34.74 (3) Å | T = 293 K |
V = 4096 (6) Å3 | Blocks, yellow |
Z = 8 | 0.30 × 0.25 × 0.15 mm |
Data collection top
Bruker SMART APEX CCD area-detector diffractometer | 4113 independent reflections |
Radiation source: fine-focus sealed tube | 2436 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.069 |
ϕ and ω scans | θmax = 26.4°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −16→15 |
Tmin = 0.908, Tmax = 0.956 | k = −10→10 |
29534 measured reflections | l = −42→42 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.060 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.136 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0454P)2 + 2.7373P] where P = (Fo2 + 2Fc2)/3 |
4113 reflections | (Δ/σ)max < 0.001 |
262 parameters | Δρmax = 0.29 e Å−3 |
0 restraints | Δρmin = −0.23 e Å−3 |
Crystal data top
C23H21ClN2OS | V = 4096 (6) Å3 |
Mr = 408.93 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 13.785 (11) Å | µ = 0.31 mm−1 |
b = 8.554 (7) Å | T = 293 K |
c = 34.74 (3) Å | 0.30 × 0.25 × 0.15 mm |
Data collection top
Bruker SMART APEX CCD area-detector diffractometer | 4113 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 2436 reflections with I > 2σ(I) |
Tmin = 0.908, Tmax = 0.956 | Rint = 0.069 |
29534 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.060 | 0 restraints |
wR(F2) = 0.136 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 0.29 e Å−3 |
4113 reflections | Δρmin = −0.23 e Å−3 |
262 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S1 | 0.92208 (6) | 0.70576 (10) | 0.33068 (2) | 0.0602 (3) | |
Cl1 | 0.29069 (7) | 0.76530 (18) | 0.27328 (3) | 0.1112 (5) | |
N1 | 0.73401 (17) | 0.6108 (3) | 0.34342 (6) | 0.0457 (6) | |
N2 | 0.72118 (18) | 0.4374 (3) | 0.41452 (7) | 0.0458 (6) | |
O1 | 0.84827 (15) | 0.2705 (2) | 0.41780 (6) | 0.0574 (6) | |
C1 | 0.8307 (2) | 0.6006 (3) | 0.35358 (8) | 0.0434 (7) | |
C2 | 0.86855 (19) | 0.5004 (3) | 0.38087 (7) | 0.0394 (6) | |
C3 | 0.9725 (2) | 0.5082 (3) | 0.38288 (8) | 0.0459 (7) | |
C4 | 1.0096 (2) | 0.6141 (4) | 0.35767 (9) | 0.0545 (8) | |
C5 | 1.0371 (2) | 0.4144 (4) | 0.40892 (9) | 0.0585 (9) | |
C6 | 1.1396 (3) | 0.4738 (7) | 0.40844 (15) | 0.1224 (19) | |
C7 | 1.1754 (3) | 0.5376 (7) | 0.37429 (14) | 0.1170 (18) | |
C8 | 1.1155 (2) | 0.6520 (5) | 0.35284 (12) | 0.0817 (12) | |
C9 | 0.7036 (2) | 0.7164 (4) | 0.32054 (8) | 0.0470 (7) | |
C10 | 0.6025 (2) | 0.7268 (3) | 0.30893 (8) | 0.0461 (7) | |
C11 | 0.5326 (2) | 0.6282 (4) | 0.32424 (9) | 0.0573 (8) | |
C12 | 0.4377 (3) | 0.6386 (4) | 0.31303 (10) | 0.0672 (10) | |
C13 | 0.4111 (2) | 0.7507 (5) | 0.28681 (9) | 0.0651 (9) | |
C14 | 0.4779 (3) | 0.8502 (4) | 0.27108 (9) | 0.0663 (10) | |
C15 | 0.5740 (2) | 0.8385 (4) | 0.28237 (8) | 0.0564 (8) | |
C16 | 0.8125 (2) | 0.3922 (3) | 0.40592 (8) | 0.0395 (6) | |
C17 | 0.6523 (2) | 0.3637 (3) | 0.43844 (8) | 0.0411 (7) | |
C18 | 0.6736 (2) | 0.2406 (3) | 0.46303 (8) | 0.0522 (8) | |
C19 | 0.6005 (3) | 0.1797 (4) | 0.48564 (9) | 0.0672 (10) | |
C20 | 0.5078 (3) | 0.2399 (4) | 0.48442 (9) | 0.0668 (10) | |
C21 | 0.4860 (2) | 0.3629 (4) | 0.46018 (9) | 0.0544 (8) | |
C22 | 0.5585 (2) | 0.4233 (3) | 0.43739 (8) | 0.0486 (7) | |
C23 | 0.3849 (2) | 0.4315 (5) | 0.45889 (11) | 0.0762 (11) | |
HN2 | 0.702 (2) | 0.524 (4) | 0.4055 (9) | 0.061 (10)* | |
H5A | 1.0363 | 0.3059 | 0.4008 | 0.070* | |
H5B | 1.0121 | 0.4192 | 0.4350 | 0.070* | |
H6A | 1.1453 | 0.5528 | 0.4283 | 0.147* | |
H6B | 1.1817 | 0.3879 | 0.4157 | 0.147* | |
H7A | 1.1895 | 0.4515 | 0.3570 | 0.140* | |
H7B | 1.2368 | 0.5877 | 0.3802 | 0.140* | |
H8A | 1.1325 | 0.6491 | 0.3257 | 0.098* | |
H8B | 1.1282 | 0.7566 | 0.3624 | 0.098* | |
H9 | 0.748 (2) | 0.797 (3) | 0.3115 (7) | 0.052 (8)* | |
H11 | 0.5505 | 0.5539 | 0.3424 | 0.069* | |
H12 | 0.3917 | 0.5704 | 0.3231 | 0.081* | |
H14 | 0.4591 | 0.9246 | 0.2531 | 0.080* | |
H15 | 0.6198 | 0.9063 | 0.2720 | 0.068* | |
H18 | 0.7361 | 0.1999 | 0.4642 | 0.063* | |
H19 | 0.6141 | 0.0966 | 0.5020 | 0.081* | |
H20 | 0.4597 | 0.1974 | 0.5000 | 0.080* | |
H22 | 0.5444 | 0.5058 | 0.4209 | 0.058* | |
H23A | 0.3791 | 0.5118 | 0.4781 | 0.114* | |
H23B | 0.3382 | 0.3507 | 0.4639 | 0.114* | |
H23C | 0.3732 | 0.4754 | 0.4339 | 0.114* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S1 | 0.0566 (5) | 0.0630 (5) | 0.0609 (5) | −0.0031 (4) | 0.0093 (4) | 0.0196 (4) |
Cl1 | 0.0551 (6) | 0.1986 (14) | 0.0798 (7) | 0.0124 (7) | −0.0116 (5) | 0.0233 (8) |
O1 | 0.0471 (12) | 0.0467 (12) | 0.0784 (15) | 0.0063 (10) | 0.0026 (11) | 0.0196 (11) |
N1 | 0.0483 (15) | 0.0471 (14) | 0.0416 (13) | 0.0045 (12) | −0.0009 (11) | 0.0049 (12) |
N2 | 0.0437 (16) | 0.0430 (15) | 0.0509 (15) | 0.0037 (12) | 0.0048 (12) | 0.0135 (12) |
C1 | 0.0431 (18) | 0.0435 (16) | 0.0436 (16) | 0.0017 (14) | 0.0026 (13) | 0.0024 (13) |
C2 | 0.0404 (17) | 0.0383 (15) | 0.0395 (16) | 0.0015 (13) | 0.0020 (12) | −0.0011 (13) |
C3 | 0.0422 (18) | 0.0512 (17) | 0.0441 (17) | 0.0026 (14) | 0.0002 (14) | −0.0018 (14) |
C4 | 0.0468 (19) | 0.060 (2) | 0.0564 (19) | −0.0050 (16) | 0.0057 (15) | 0.0036 (16) |
C5 | 0.0418 (18) | 0.075 (2) | 0.059 (2) | 0.0019 (17) | −0.0052 (15) | 0.0051 (17) |
C6 | 0.042 (2) | 0.191 (5) | 0.135 (4) | −0.009 (3) | −0.012 (3) | 0.070 (4) |
C7 | 0.043 (2) | 0.178 (5) | 0.130 (4) | −0.006 (3) | 0.001 (3) | 0.050 (4) |
C8 | 0.049 (2) | 0.103 (3) | 0.093 (3) | −0.016 (2) | 0.012 (2) | 0.015 (2) |
C9 | 0.056 (2) | 0.0471 (17) | 0.0376 (16) | 0.0053 (16) | 0.0026 (14) | 0.0044 (14) |
C10 | 0.0517 (19) | 0.0513 (17) | 0.0354 (15) | 0.0089 (15) | −0.0011 (13) | 0.0004 (14) |
C11 | 0.060 (2) | 0.058 (2) | 0.0536 (19) | 0.0044 (17) | −0.0049 (17) | 0.0083 (16) |
C12 | 0.062 (2) | 0.080 (2) | 0.060 (2) | −0.009 (2) | 0.0011 (17) | 0.0036 (19) |
C13 | 0.053 (2) | 0.098 (3) | 0.0439 (18) | 0.012 (2) | −0.0037 (16) | 0.0001 (19) |
C14 | 0.066 (2) | 0.087 (3) | 0.0459 (18) | 0.016 (2) | −0.0062 (17) | 0.0170 (18) |
C15 | 0.056 (2) | 0.068 (2) | 0.0453 (17) | 0.0063 (17) | 0.0022 (15) | 0.0103 (16) |
C16 | 0.0401 (17) | 0.0377 (15) | 0.0407 (15) | −0.0022 (14) | −0.0032 (13) | 0.0009 (13) |
C17 | 0.0450 (18) | 0.0399 (15) | 0.0383 (15) | −0.0037 (13) | 0.0007 (13) | 0.0006 (12) |
C18 | 0.058 (2) | 0.0531 (18) | 0.0451 (17) | 0.0001 (16) | 0.0048 (15) | 0.0093 (15) |
C19 | 0.081 (3) | 0.061 (2) | 0.059 (2) | −0.0041 (19) | 0.0108 (19) | 0.0188 (17) |
C20 | 0.067 (2) | 0.076 (2) | 0.057 (2) | −0.023 (2) | 0.0147 (18) | 0.0080 (18) |
C21 | 0.047 (2) | 0.066 (2) | 0.0504 (18) | −0.0161 (16) | 0.0037 (15) | −0.0052 (17) |
C22 | 0.050 (2) | 0.0479 (17) | 0.0480 (17) | −0.0068 (15) | −0.0013 (14) | 0.0051 (14) |
C23 | 0.043 (2) | 0.104 (3) | 0.082 (3) | −0.012 (2) | 0.0069 (18) | −0.008 (2) |
Geometric parameters (Å, º) top
S1—C4 | 1.717 (3) | C21—C20 | 1.381 (4) |
S1—C1 | 1.740 (3) | C21—C23 | 1.512 (4) |
Cl1—C13 | 1.729 (4) | C5—C6 | 1.501 (5) |
O1—C16 | 1.224 (3) | C5—H5A | 0.9700 |
N2—C16 | 1.350 (4) | C5—H5B | 0.9700 |
N2—C17 | 1.411 (4) | C4—C8 | 1.506 (4) |
N2—HN2 | 0.85 (3) | C15—C14 | 1.385 (4) |
N1—C9 | 1.274 (3) | C15—H15 | 0.9300 |
N1—C1 | 1.382 (4) | C13—C14 | 1.367 (5) |
C2—C1 | 1.380 (4) | C13—C12 | 1.373 (5) |
C2—C3 | 1.436 (4) | C14—H14 | 0.9300 |
C2—C16 | 1.487 (4) | C20—C19 | 1.378 (5) |
C3—C4 | 1.359 (4) | C20—H20 | 0.9300 |
C3—C5 | 1.501 (4) | C12—H12 | 0.9300 |
C18—C19 | 1.380 (4) | C19—H19 | 0.9300 |
C18—C17 | 1.388 (4) | C23—H23A | 0.9600 |
C18—H18 | 0.9300 | C23—H23B | 0.9600 |
C17—C22 | 1.390 (4) | C23—H23C | 0.9600 |
C22—C21 | 1.376 (4) | C6—C7 | 1.396 (6) |
C22—H22 | 0.9300 | C6—H6A | 0.9700 |
C10—C15 | 1.385 (4) | C6—H6B | 0.9700 |
C10—C11 | 1.387 (4) | C7—C8 | 1.482 (5) |
C10—C9 | 1.454 (4) | C7—H7A | 0.9700 |
C9—H9 | 0.98 (3) | C7—H7B | 0.9700 |
C11—C12 | 1.368 (4) | C8—H8A | 0.9700 |
C11—H11 | 0.9300 | C8—H8B | 0.9700 |
| | | |
C4—S1—C1 | 91.28 (15) | C3—C4—S1 | 113.1 (2) |
C16—N2—C17 | 129.1 (3) | C8—C4—S1 | 121.4 (2) |
C16—N2—HN2 | 117 (2) | C14—C15—C10 | 120.7 (3) |
C17—N2—HN2 | 114 (2) | C14—C15—H15 | 119.7 |
C9—N1—C1 | 121.4 (3) | C10—C15—H15 | 119.7 |
C1—C2—C3 | 112.4 (3) | C14—C13—C12 | 121.3 (3) |
C1—C2—C16 | 126.3 (3) | C14—C13—Cl1 | 119.5 (3) |
C3—C2—C16 | 121.3 (2) | C12—C13—Cl1 | 119.2 (3) |
C4—C3—C2 | 112.0 (3) | C13—C14—C15 | 119.1 (3) |
C4—C3—C5 | 121.4 (3) | C13—C14—H14 | 120.5 |
C2—C3—C5 | 126.5 (3) | C15—C14—H14 | 120.5 |
C2—C1—N1 | 125.4 (3) | C19—C20—C21 | 120.4 (3) |
C2—C1—S1 | 111.2 (2) | C19—C20—H20 | 119.8 |
N1—C1—S1 | 123.3 (2) | C21—C20—H20 | 119.8 |
O1—C16—N2 | 123.0 (3) | C11—C12—C13 | 119.3 (3) |
O1—C16—C2 | 121.1 (3) | C11—C12—H12 | 120.3 |
N2—C16—C2 | 115.9 (2) | C13—C12—H12 | 120.3 |
C19—C18—C17 | 118.8 (3) | C20—C19—C18 | 121.3 (3) |
C19—C18—H18 | 120.6 | C20—C19—H19 | 119.4 |
C17—C18—H18 | 120.6 | C18—C19—H19 | 119.4 |
C18—C17—C22 | 119.5 (3) | C21—C23—H23A | 109.5 |
C18—C17—N2 | 124.0 (3) | C21—C23—H23B | 109.5 |
C22—C17—N2 | 116.6 (2) | H23A—C23—H23B | 109.5 |
C21—C22—C17 | 121.5 (3) | C21—C23—H23C | 109.5 |
C21—C22—H22 | 119.2 | H23A—C23—H23C | 109.5 |
C17—C22—H22 | 119.2 | H23B—C23—H23C | 109.5 |
C15—C10—C11 | 118.5 (3) | C7—C6—C5 | 118.3 (4) |
C15—C10—C9 | 120.0 (3) | C7—C6—H6A | 107.7 |
C11—C10—C9 | 121.5 (3) | C5—C6—H6A | 107.7 |
N1—C9—C10 | 122.1 (3) | C7—C6—H6B | 107.7 |
N1—C9—H9 | 119.4 (17) | C5—C6—H6B | 107.7 |
C10—C9—H9 | 118.4 (17) | H6A—C6—H6B | 107.1 |
C12—C11—C10 | 121.1 (3) | C6—C7—C8 | 119.2 (4) |
C12—C11—H11 | 119.5 | C6—C7—H7A | 107.5 |
C10—C11—H11 | 119.5 | C8—C7—H7A | 107.5 |
C22—C21—C20 | 118.6 (3) | C6—C7—H7B | 107.5 |
C22—C21—C23 | 120.5 (3) | C8—C7—H7B | 107.5 |
C20—C21—C23 | 121.0 (3) | H7A—C7—H7B | 107.0 |
C3—C5—C6 | 111.7 (3) | C7—C8—C4 | 110.0 (3) |
C3—C5—H5A | 109.3 | C7—C8—H8A | 109.7 |
C6—C5—H5A | 109.3 | C4—C8—H8A | 109.7 |
C3—C5—H5B | 109.3 | C7—C8—H8B | 109.7 |
C6—C5—H5B | 109.3 | C4—C8—H8B | 109.7 |
H5A—C5—H5B | 107.9 | H8A—C8—H8B | 108.2 |
C3—C4—C8 | 125.5 (3) | | |
| | | |
C1—C2—C3—C4 | 0.7 (4) | C9—C10—C11—C12 | −179.8 (3) |
C16—C2—C3—C4 | 180.0 (2) | C17—C22—C21—C20 | −0.3 (5) |
C1—C2—C3—C5 | −179.3 (3) | C17—C22—C21—C23 | 179.1 (3) |
C16—C2—C3—C5 | 0.0 (4) | C4—C3—C5—C6 | 10.6 (5) |
C3—C2—C1—N1 | 175.4 (3) | C2—C3—C5—C6 | −169.4 (3) |
C16—C2—C1—N1 | −3.8 (4) | C2—C3—C4—C8 | 179.2 (3) |
C3—C2—C1—S1 | −0.6 (3) | C5—C3—C4—C8 | −0.8 (5) |
C16—C2—C1—S1 | −179.8 (2) | C2—C3—C4—S1 | −0.5 (3) |
C9—N1—C1—C2 | 173.3 (3) | C5—C3—C4—S1 | 179.5 (2) |
C9—N1—C1—S1 | −11.1 (4) | C1—S1—C4—C3 | 0.2 (3) |
C4—S1—C1—C2 | 0.3 (2) | C1—S1—C4—C8 | −179.6 (3) |
C4—S1—C1—N1 | −175.8 (3) | C11—C10—C15—C14 | −0.7 (5) |
C17—N2—C16—O1 | 2.4 (5) | C9—C10—C15—C14 | −179.8 (3) |
C17—N2—C16—C2 | −177.4 (3) | C12—C13—C14—C15 | −1.0 (5) |
C1—C2—C16—O1 | 151.5 (3) | Cl1—C13—C14—C15 | 179.4 (3) |
C3—C2—C16—O1 | −27.7 (4) | C10—C15—C14—C13 | 0.6 (5) |
C1—C2—C16—N2 | −28.7 (4) | C22—C21—C20—C19 | 0.2 (5) |
C3—C2—C16—N2 | 152.1 (3) | C23—C21—C20—C19 | −179.2 (3) |
C19—C18—C17—C22 | 0.5 (4) | C10—C11—C12—C13 | −1.4 (5) |
C19—C18—C17—N2 | 178.8 (3) | C14—C13—C12—C11 | 1.4 (5) |
C16—N2—C17—C18 | 11.4 (5) | Cl1—C13—C12—C11 | −179.0 (3) |
C16—N2—C17—C22 | −170.2 (3) | C21—C20—C19—C18 | 0.3 (5) |
C18—C17—C22—C21 | 0.0 (4) | C17—C18—C19—C20 | −0.6 (5) |
N2—C17—C22—C21 | −178.5 (3) | C3—C5—C6—C7 | −32.9 (6) |
C1—N1—C9—C10 | 178.7 (3) | C5—C6—C7—C8 | 46.7 (8) |
C15—C10—C9—N1 | −176.5 (3) | C6—C7—C8—C4 | −32.8 (6) |
C11—C10—C9—N1 | 4.4 (4) | C3—C4—C8—C7 | 10.3 (5) |
C15—C10—C11—C12 | 1.1 (5) | S1—C4—C8—C7 | −170.0 (3) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N2—HN2···N1 | 0.85 (3) | 2.32 (3) | 2.887 (4) | 125 (3) |
N2—HN2···O1i | 0.85 (3) | 2.26 (3) | 3.009 (4) | 147 (3) |
Symmetry code: (i) −x+3/2, y+1/2, z. |
(II) 2-[(1E)-(4-Chlorophenyl)methyleneamino]-
N-(2-methylphenyl)-4,5,6,7- tetrahydro-1-benzothiophene-3-carboxamide
top
Crystal data top
C23H21ClN2OS | F(000) = 856 |
Mr = 408.94 | Dx = 1.354 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 725 reflections |
a = 17.511 (4) Å | θ = 1.7–25.4° |
b = 12.519 (3) Å | µ = 0.31 mm−1 |
c = 9.232 (2) Å | T = 293 K |
β = 97.406 (4)° | Blocks, yellow |
V = 2006.9 (8) Å3 | 0.30 × 0.15 × 0.10 mm |
Z = 4 | |
Data collection top
Bruker SMART APEX CCD area-detector diffractometer | 3994 independent reflections |
Radiation source: fine-focus sealed tube | 3307 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.018 |
ϕ and ω scans | θmax = 26.4°, θmin = 1.2° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −21→21 |
Tmin = 0.921, Tmax = 0.970 | k = −15→15 |
15187 measured reflections | l = −11→11 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.157 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.91 | w = 1/[σ2(Fo2) + (0.1224P)2 + 0.6875P] where P = (Fo2 + 2Fc2)/3 |
3994 reflections | (Δ/σ)max = 0.001 |
262 parameters | Δρmax = 0.43 e Å−3 |
0 restraints | Δρmin = −0.42 e Å−3 |
Crystal data top
C23H21ClN2OS | V = 2006.9 (8) Å3 |
Mr = 408.94 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 17.511 (4) Å | µ = 0.31 mm−1 |
b = 12.519 (3) Å | T = 293 K |
c = 9.232 (2) Å | 0.30 × 0.15 × 0.10 mm |
β = 97.406 (4)° | |
Data collection top
Bruker SMART APEX CCD area-detector diffractometer | 3994 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 3307 reflections with I > 2σ(I) |
Tmin = 0.921, Tmax = 0.970 | Rint = 0.018 |
15187 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.048 | 0 restraints |
wR(F2) = 0.157 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.91 | Δρmax = 0.43 e Å−3 |
3994 reflections | Δρmin = −0.42 e Å−3 |
262 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S1 | 0.66585 (3) | 0.40800 (4) | 0.65249 (6) | 0.04534 (19) | |
Cl1 | 0.50494 (4) | −0.25980 (5) | 0.61720 (8) | 0.0663 (2) | |
O1 | 0.83579 (9) | 0.34669 (12) | 0.28231 (16) | 0.0505 (4) | |
N1 | 0.69212 (9) | 0.20662 (13) | 0.55121 (17) | 0.0382 (4) | |
N2 | 0.84504 (11) | 0.20856 (14) | 0.4411 (2) | 0.0478 (5) | |
C1 | 0.71378 (11) | 0.31339 (15) | 0.55888 (19) | 0.0357 (4) | |
C2 | 0.76870 (10) | 0.36134 (15) | 0.48729 (19) | 0.0347 (4) | |
C3 | 0.77158 (11) | 0.47495 (15) | 0.5072 (2) | 0.0393 (4) | |
C4 | 0.71986 (12) | 0.51050 (16) | 0.5939 (2) | 0.0434 (5) | |
C5 | 0.82347 (14) | 0.55131 (18) | 0.4399 (3) | 0.0554 (6) | |
C6 | 0.8163 (2) | 0.6639 (2) | 0.4930 (5) | 0.1014 (13) | |
C7 | 0.7479 (3) | 0.6968 (2) | 0.5419 (6) | 0.1273 (19) | |
C8 | 0.70773 (16) | 0.62482 (19) | 0.6342 (3) | 0.0611 (6) | |
C9 | 0.65647 (11) | 0.16723 (17) | 0.6516 (2) | 0.0386 (4) | |
C10 | 0.62410 (11) | 0.05980 (16) | 0.6434 (2) | 0.0381 (4) | |
C11 | 0.61818 (13) | −0.00057 (18) | 0.5163 (2) | 0.0466 (5) | |
C12 | 0.58287 (13) | −0.09903 (18) | 0.5077 (2) | 0.0507 (5) | |
C13 | 0.55294 (11) | −0.13765 (17) | 0.6287 (2) | 0.0456 (5) | |
C14 | 0.55863 (13) | −0.08096 (18) | 0.7570 (2) | 0.0490 (5) | |
C15 | 0.59416 (12) | 0.01777 (18) | 0.7637 (2) | 0.0447 (5) | |
C16 | 0.81961 (10) | 0.30465 (15) | 0.3939 (2) | 0.0363 (4) | |
C17 | 0.89367 (12) | 0.13949 (17) | 0.3719 (2) | 0.0464 (5) | |
C18 | 0.94546 (16) | 0.1793 (2) | 0.2831 (4) | 0.0735 (8) | |
C19 | 0.99307 (19) | 0.1103 (3) | 0.2199 (4) | 0.0876 (11) | |
C20 | 0.99065 (17) | 0.0025 (2) | 0.2465 (4) | 0.0769 (9) | |
C21 | 0.94035 (15) | −0.0360 (2) | 0.3348 (3) | 0.0599 (6) | |
C22 | 0.89009 (12) | 0.03026 (17) | 0.3988 (2) | 0.0452 (5) | |
C23 | 0.83408 (16) | −0.01454 (19) | 0.4917 (3) | 0.0626 (7) | |
H2N | 0.8317 (16) | 0.190 (2) | 0.513 (3) | 0.059 (8)* | |
H5A | 0.8764 | 0.5280 | 0.4633 | 0.066* | |
H5B | 0.8107 | 0.5498 | 0.3345 | 0.066* | |
H6A | 0.8575 | 0.6754 | 0.5722 | 0.122* | |
H6B | 0.8258 | 0.7113 | 0.4142 | 0.122* | |
H7A | 0.7119 | 0.7142 | 0.4563 | 0.153* | |
H7B | 0.7588 | 0.7627 | 0.5959 | 0.153* | |
H8A | 0.6531 | 0.6409 | 0.6209 | 0.073* | |
H8B | 0.7273 | 0.6361 | 0.7362 | 0.073* | |
H9 | 0.6531 (13) | 0.206 (2) | 0.736 (3) | 0.049 (6)* | |
H11 | 0.6385 | 0.0260 | 0.4353 | 0.056* | |
H12 | 0.5792 | −0.1388 | 0.4220 | 0.061* | |
H14 | 0.5389 | −0.1086 | 0.8380 | 0.059* | |
H15 | 0.5981 | 0.0568 | 0.8500 | 0.054* | |
H18 | 0.9480 | 0.2524 | 0.2664 | 0.088* | |
H19 | 1.0269 | 0.1369 | 0.1589 | 0.105* | |
H20 | 1.0231 | −0.0439 | 0.2046 | 0.092* | |
H21 | 0.9395 | −0.1091 | 0.3531 | 0.072* | |
H23A | 0.8432 | −0.0897 | 0.5053 | 0.094* | |
H23B | 0.7826 | −0.0033 | 0.4446 | 0.094* | |
H23C | 0.8405 | 0.0206 | 0.5849 | 0.094* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S1 | 0.0531 (3) | 0.0430 (3) | 0.0442 (3) | 0.0040 (2) | 0.0224 (2) | −0.0010 (2) |
Cl1 | 0.0584 (4) | 0.0466 (4) | 0.0957 (5) | −0.0143 (3) | 0.0170 (3) | 0.0031 (3) |
O1 | 0.0611 (9) | 0.0468 (9) | 0.0482 (8) | 0.0099 (7) | 0.0244 (7) | 0.0077 (7) |
N1 | 0.0383 (8) | 0.0369 (9) | 0.0408 (8) | −0.0030 (7) | 0.0104 (7) | 0.0011 (7) |
N2 | 0.0524 (10) | 0.0363 (9) | 0.0605 (12) | 0.0079 (8) | 0.0299 (9) | 0.0078 (8) |
C1 | 0.0388 (10) | 0.0357 (10) | 0.0338 (9) | 0.0019 (8) | 0.0089 (7) | 0.0006 (7) |
C2 | 0.0362 (9) | 0.0328 (9) | 0.0359 (9) | 0.0014 (7) | 0.0076 (7) | 0.0016 (7) |
C3 | 0.0405 (10) | 0.0338 (10) | 0.0445 (10) | 0.0012 (8) | 0.0084 (8) | 0.0001 (8) |
C4 | 0.0493 (11) | 0.0360 (10) | 0.0458 (11) | 0.0033 (9) | 0.0104 (9) | −0.0011 (8) |
C5 | 0.0590 (14) | 0.0355 (11) | 0.0766 (15) | −0.0048 (10) | 0.0276 (12) | 0.0008 (11) |
C6 | 0.118 (3) | 0.0380 (14) | 0.164 (4) | −0.0109 (16) | 0.080 (3) | −0.0101 (18) |
C7 | 0.153 (4) | 0.0352 (15) | 0.219 (5) | 0.0004 (18) | 0.118 (4) | −0.007 (2) |
C8 | 0.0742 (16) | 0.0409 (12) | 0.0720 (15) | 0.0100 (11) | 0.0242 (13) | −0.0080 (11) |
C9 | 0.0399 (10) | 0.0416 (11) | 0.0353 (9) | −0.0004 (8) | 0.0081 (8) | 0.0017 (8) |
C10 | 0.0340 (9) | 0.0419 (10) | 0.0390 (10) | −0.0010 (8) | 0.0068 (7) | 0.0052 (8) |
C11 | 0.0496 (12) | 0.0523 (12) | 0.0409 (10) | −0.0086 (9) | 0.0173 (9) | 0.0020 (9) |
C12 | 0.0546 (12) | 0.0509 (13) | 0.0487 (12) | −0.0074 (10) | 0.0145 (10) | −0.0074 (9) |
C13 | 0.0371 (10) | 0.0404 (11) | 0.0598 (12) | −0.0025 (8) | 0.0082 (9) | 0.0083 (9) |
C14 | 0.0528 (12) | 0.0497 (13) | 0.0472 (12) | −0.0020 (10) | 0.0169 (10) | 0.0139 (9) |
C15 | 0.0504 (12) | 0.0474 (12) | 0.0377 (10) | −0.0018 (9) | 0.0108 (9) | 0.0043 (8) |
C16 | 0.0324 (9) | 0.0341 (10) | 0.0438 (10) | −0.0024 (7) | 0.0101 (8) | −0.0001 (8) |
C17 | 0.0436 (11) | 0.0397 (11) | 0.0591 (12) | 0.0074 (9) | 0.0188 (9) | 0.0005 (9) |
C18 | 0.0686 (17) | 0.0502 (14) | 0.113 (2) | 0.0150 (12) | 0.0532 (16) | 0.0159 (14) |
C19 | 0.0774 (19) | 0.078 (2) | 0.121 (3) | 0.0244 (16) | 0.065 (2) | 0.0163 (19) |
C20 | 0.0733 (18) | 0.0677 (18) | 0.097 (2) | 0.0269 (14) | 0.0390 (16) | −0.0042 (15) |
C21 | 0.0662 (15) | 0.0420 (12) | 0.0730 (16) | 0.0121 (11) | 0.0140 (12) | −0.0104 (11) |
C22 | 0.0472 (11) | 0.0385 (11) | 0.0502 (11) | 0.0036 (9) | 0.0074 (9) | −0.0043 (9) |
C23 | 0.0786 (18) | 0.0352 (11) | 0.0788 (17) | −0.0037 (11) | 0.0279 (14) | −0.0001 (11) |
Geometric parameters (Å, º) top
S1—C4 | 1.722 (2) | C10—C11 | 1.388 (3) |
S1—C1 | 1.7438 (19) | C10—C9 | 1.458 (3) |
Cl1—C13 | 1.741 (2) | C14—H14 | 0.9300 |
O1—C16 | 1.222 (2) | C9—H9 | 0.92 (2) |
N2—C16 | 1.336 (3) | C11—H11 | 0.9300 |
N2—C17 | 1.421 (3) | C5—C6 | 1.503 (4) |
N2—H2N | 0.77 (3) | C5—H5A | 0.9700 |
N1—C9 | 1.281 (2) | C5—H5B | 0.9700 |
N1—C1 | 1.389 (3) | C8—C7 | 1.479 (4) |
C3—C4 | 1.359 (3) | C8—H8A | 0.9700 |
C3—C2 | 1.434 (3) | C8—H8B | 0.9700 |
C3—C5 | 1.507 (3) | C21—C20 | 1.363 (4) |
C4—C8 | 1.501 (3) | C21—H21 | 0.9300 |
C22—C17 | 1.393 (3) | C23—H23A | 0.9600 |
C22—C21 | 1.395 (3) | C23—H23B | 0.9600 |
C22—C23 | 1.493 (3) | C23—H23C | 0.9600 |
C16—C2 | 1.496 (2) | C18—C19 | 1.382 (4) |
C2—C1 | 1.373 (3) | C18—H18 | 0.9300 |
C15—C14 | 1.382 (3) | C20—C19 | 1.373 (4) |
C15—C10 | 1.391 (3) | C20—H20 | 0.9300 |
C15—H15 | 0.9300 | C6—C7 | 1.395 (5) |
C12—C11 | 1.377 (3) | C6—H6A | 0.9700 |
C12—C13 | 1.381 (3) | C6—H6B | 0.9700 |
C12—H12 | 0.9300 | C19—H19 | 0.9300 |
C13—C14 | 1.373 (3) | C7—H7A | 0.9700 |
C17—C18 | 1.391 (3) | C7—H7B | 0.9700 |
| | | |
C4—S1—C1 | 91.81 (10) | C12—C11—H11 | 119.3 |
C16—N2—C17 | 126.53 (19) | C10—C11—H11 | 119.3 |
C16—N2—H2N | 115 (2) | C6—C5—C3 | 112.4 (2) |
C17—N2—H2N | 118 (2) | C6—C5—H5A | 109.1 |
C9—N1—C1 | 119.27 (17) | C3—C5—H5A | 109.1 |
C4—C3—C2 | 112.66 (17) | C6—C5—H5B | 109.1 |
C4—C3—C5 | 121.21 (18) | C3—C5—H5B | 109.1 |
C2—C3—C5 | 126.12 (17) | H5A—C5—H5B | 107.9 |
C3—C4—C8 | 125.8 (2) | C7—C8—C4 | 110.2 (2) |
C3—C4—S1 | 112.08 (15) | C7—C8—H8A | 109.6 |
C8—C4—S1 | 122.13 (17) | C4—C8—H8A | 109.6 |
C17—C22—C21 | 117.6 (2) | C7—C8—H8B | 109.6 |
C17—C22—C23 | 121.29 (19) | C4—C8—H8B | 109.6 |
C21—C22—C23 | 121.1 (2) | H8A—C8—H8B | 108.1 |
O1—C16—N2 | 123.95 (18) | C20—C21—C22 | 122.3 (2) |
O1—C16—C2 | 120.09 (17) | C20—C21—H21 | 118.8 |
N2—C16—C2 | 115.96 (17) | C22—C21—H21 | 118.8 |
C1—C2—C3 | 112.77 (16) | C22—C23—H23A | 109.5 |
C1—C2—C16 | 125.17 (17) | C22—C23—H23B | 109.5 |
C3—C2—C16 | 122.03 (16) | H23A—C23—H23B | 109.5 |
C14—C15—C10 | 121.1 (2) | C22—C23—H23C | 109.5 |
C14—C15—H15 | 119.4 | H23A—C23—H23C | 109.5 |
C10—C15—H15 | 119.4 | H23B—C23—H23C | 109.5 |
C2—C1—N1 | 126.85 (17) | C19—C18—C17 | 120.0 (3) |
C2—C1—S1 | 110.68 (14) | C19—C18—H18 | 120.0 |
N1—C1—S1 | 122.23 (14) | C17—C18—H18 | 120.0 |
C11—C12—C13 | 118.8 (2) | C21—C20—C19 | 119.5 (2) |
C11—C12—H12 | 120.6 | C21—C20—H20 | 120.3 |
C13—C12—H12 | 120.6 | C19—C20—H20 | 120.3 |
C14—C13—C12 | 121.6 (2) | C7—C6—C5 | 119.6 (3) |
C14—C13—Cl1 | 119.17 (16) | C7—C6—H6A | 107.4 |
C12—C13—Cl1 | 119.24 (18) | C5—C6—H6A | 107.4 |
C18—C17—C22 | 120.3 (2) | C7—C6—H6B | 107.4 |
C18—C17—N2 | 121.4 (2) | C5—C6—H6B | 107.4 |
C22—C17—N2 | 118.28 (19) | H6A—C6—H6B | 107.0 |
C11—C10—C15 | 118.30 (19) | C20—C19—C18 | 120.3 (3) |
C11—C10—C9 | 122.18 (17) | C20—C19—H19 | 119.8 |
C15—C10—C9 | 119.43 (18) | C18—C19—H19 | 119.8 |
C13—C14—C15 | 118.87 (19) | C6—C7—C8 | 119.9 (3) |
C13—C14—H14 | 120.6 | C6—C7—H7A | 107.4 |
C15—C14—H14 | 120.6 | C8—C7—H7A | 107.4 |
N1—C9—C10 | 122.67 (19) | C6—C7—H7B | 107.4 |
N1—C9—H9 | 119.7 (15) | C8—C7—H7B | 107.4 |
C10—C9—H9 | 117.5 (15) | H7A—C7—H7B | 106.9 |
C12—C11—C10 | 121.31 (19) | | |
| | | |
C2—C3—C4—C8 | −179.1 (2) | C23—C22—C17—N2 | 3.0 (3) |
C5—C3—C4—C8 | −0.4 (4) | C16—N2—C17—C18 | 27.4 (4) |
C2—C3—C4—S1 | −0.5 (2) | C16—N2—C17—C22 | −154.6 (2) |
C5—C3—C4—S1 | 178.25 (17) | C14—C15—C10—C11 | −0.7 (3) |
C1—S1—C4—C3 | 0.20 (17) | C14—C15—C10—C9 | 175.86 (19) |
C1—S1—C4—C8 | 178.9 (2) | C12—C13—C14—C15 | 1.0 (3) |
C17—N2—C16—O1 | −0.4 (4) | Cl1—C13—C14—C15 | −177.53 (17) |
C17—N2—C16—C2 | 179.88 (19) | C10—C15—C14—C13 | −0.2 (3) |
C4—C3—C2—C1 | 0.7 (2) | C1—N1—C9—C10 | 172.85 (17) |
C5—C3—C2—C1 | −178.0 (2) | C11—C10—C9—N1 | −11.1 (3) |
C4—C3—C2—C16 | 178.99 (18) | C15—C10—C9—N1 | 172.51 (19) |
C5—C3—C2—C16 | 0.3 (3) | C13—C12—C11—C10 | 0.0 (3) |
O1—C16—C2—C1 | 142.1 (2) | C15—C10—C11—C12 | 0.8 (3) |
N2—C16—C2—C1 | −38.2 (3) | C9—C10—C11—C12 | −175.7 (2) |
O1—C16—C2—C3 | −36.0 (3) | C4—C3—C5—C6 | 6.0 (4) |
N2—C16—C2—C3 | 143.71 (19) | C2—C3—C5—C6 | −175.4 (3) |
C3—C2—C1—N1 | 174.00 (18) | C3—C4—C8—C7 | 12.1 (4) |
C16—C2—C1—N1 | −4.3 (3) | S1—C4—C8—C7 | −166.4 (3) |
C3—C2—C1—S1 | −0.5 (2) | C17—C22—C21—C20 | −1.2 (4) |
C16—C2—C1—S1 | −178.76 (14) | C23—C22—C21—C20 | 178.2 (3) |
C9—N1—C1—C2 | 161.01 (19) | C22—C17—C18—C19 | 0.7 (5) |
C9—N1—C1—S1 | −25.1 (2) | N2—C17—C18—C19 | 178.7 (3) |
C4—S1—C1—C2 | 0.18 (15) | C22—C21—C20—C19 | 0.7 (5) |
C4—S1—C1—N1 | −174.62 (16) | C3—C5—C6—C7 | −26.1 (5) |
C11—C12—C13—C14 | −0.9 (3) | C21—C20—C19—C18 | 0.6 (6) |
C11—C12—C13—Cl1 | 177.61 (17) | C17—C18—C19—C20 | −1.3 (6) |
C21—C22—C17—C18 | 0.5 (4) | C5—C6—C7—C8 | 41.6 (7) |
C23—C22—C17—C18 | −179.0 (2) | C4—C8—C7—C6 | −32.2 (6) |
C21—C22—C17—N2 | −177.5 (2) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···N1 | 0.77 (3) | 2.52 (3) | 2.985 (3) | 121 (2) |
N2—H2N···O1i | 0.77 (3) | 2.52 (3) | 3.250 (3) | 159 (3) |
C11—H11···S1ii | 0.93 | 2.84 | 3.747 (2) | 166 |
C23—H23C···O1i | 0.96 | 2.48 | 3.406 (3) | 163 |
Symmetry codes: (i) x, −y+1/2, z+1/2; (ii) x, −y+1/2, z−1/2. |
Experimental details
| (I) | (II) |
Crystal data |
Chemical formula | C23H21ClN2OS | C23H21ClN2OS |
Mr | 408.93 | 408.94 |
Crystal system, space group | Orthorhombic, Pbca | Monoclinic, P21/c |
Temperature (K) | 293 | 293 |
a, b, c (Å) | 13.785 (11), 8.554 (7), 34.74 (3) | 17.511 (4), 12.519 (3), 9.232 (2) |
α, β, γ (°) | 90, 90, 90 | 90, 97.406 (4), 90 |
V (Å3) | 4096 (6) | 2006.9 (8) |
Z | 8 | 4 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.31 | 0.31 |
Crystal size (mm) | 0.30 × 0.25 × 0.15 | 0.30 × 0.15 × 0.10 |
|
Data collection |
Diffractometer | Bruker SMART APEX CCD area-detector diffractometer | Bruker SMART APEX CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.908, 0.956 | 0.921, 0.970 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 29534, 4113, 2436 | 15187, 3994, 3307 |
Rint | 0.069 | 0.018 |
(sin θ/λ)max (Å−1) | 0.625 | 0.625 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.060, 0.136, 1.02 | 0.048, 0.157, 0.91 |
No. of reflections | 4113 | 3994 |
No. of parameters | 262 | 262 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.29, −0.23 | 0.43, −0.42 |
Selected geometric parameters (Å, º) for (I) topN2—C16 | 1.350 (4) | N1—C9 | 1.274 (3) |
N2—C17 | 1.411 (4) | N1—C1 | 1.382 (4) |
| | | |
C21—C22—C17 | 121.5 (3) | C22—C21—C20 | 118.6 (3) |
| | | |
C9—N1—C1—S1 | −11.1 (4) | C16—N2—C17—C18 | 11.4 (5) |
C1—C2—C16—N2 | −28.7 (4) | C11—C10—C9—N1 | 4.4 (4) |
Hydrogen-bond geometry (Å, º) for (I) top
D—H···A | D—H | H···A | D···A | D—H···A |
N2—HN2···N1 | 0.85 (3) | 2.32 (3) | 2.887 (4) | 125 (3) |
N2—HN2···O1i | 0.85 (3) | 2.26 (3) | 3.009 (4) | 147 (3) |
Symmetry code: (i) −x+3/2, y+1/2, z. |
Selected geometric parameters (Å, º) for (II) topN2—C16 | 1.336 (3) | N1—C9 | 1.281 (2) |
N2—C17 | 1.421 (3) | N1—C1 | 1.389 (3) |
| | | |
C17—C22—C21 | 117.6 (2) | C20—C21—C22 | 122.3 (2) |
| | | |
N2—C16—C2—C1 | −38.2 (3) | C16—N2—C17—C18 | 27.4 (4) |
C9—N1—C1—S1 | −25.1 (2) | C11—C10—C9—N1 | −11.1 (3) |
Hydrogen-bond geometry (Å, º) for (II) top
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···N1 | 0.77 (3) | 2.52 (3) | 2.985 (3) | 121 (2) |
N2—H2N···O1i | 0.77 (3) | 2.52 (3) | 3.250 (3) | 159 (3) |
C11—H11···S1ii | 0.93 | 2.84 | 3.747 (2) | 166 |
C23—H23C···O1i | 0.96 | 2.48 | 3.406 (3) | 163 |
Symmetry codes: (i) x, −y+1/2, z+1/2; (ii) x, −y+1/2, z−1/2. |
The design and synthesis of compounds which possess important pharmacological properties, such as antibacterial, anticancer, antiinflamatory and antitoxic properties, is an area of research with widespread potential applications in medicine (Pellis & West, 1968; Cohen et al., 1977; Csaszar & Morvay, 1983; Lakshmi et al., 1985), and in this regard we have selected thiophene derivatives (El-Maghraby et al., 1984; Dzhurayev et al., 1992; Gewald et al., 1966) which have been found to exhibit these activities. In this context, S-containing Schiff bases are most effective. We have already reported the crystal structures of biologically active thiophene-3-carboxamide derivatives (Vasu Nirmala Choudhury et al., 2003; Vasu Nirmala Chopra et al., 2003). In this paper, structure analyses are presented for the title two compounds, (I) and (II), which show antibacterial and antifungal activities (Mohan & Saravanan, 2002, 2003). The compounds are isomers of each other, differing only in the position of attachment of the methyl at the meta and ortho positions. \sch
Compounds (I) (Fig. 1) and (II) (Fig. 2) contain three different structural moieties and these will be discussed separately. The thiophene ring is essentially planar. The six-membered cyclohexene ring adopts a half-chair conformation, with atoms C6 and C7 deviating from the C5/C3/C4/C8 plane by −0.246 (7) and 0.218 (7) Å, respectively, in (I), and by −0.249 (5) and 0.320 (1) Å, respectively, in (II). The puckering parameters (Cremer & Pople, 1975) generated by PLATON (Spek, 1990) for the cyclohexene ring are q2 = 0.138 (4) Å, ϕ2 = −151.(2)° and τ = 25 (1)° in (I), and the corresponding values are 0.126 (3) Å, −131 (2)° and 26 (1)°, respectively, in (II).
The bond angles in the methyl-phenyl ring, C20—C21—C22 in (I) [118.6 (1)°] and C17—C22—C21 in (II) [117.6 (2)°], deviate significantly from the ideal value of 120°. This deviation is due to the electron-donating inductive effect of the methyl group (Vasu Nirmala Choudhury et al., 2003; Vasu Nirmala Chopra et al., 2003). Please check both references were intended here - original CIF did not give a unique citation. The angle between the mean planes of the m-toluidine and thiophene rings is 18.4 (1)° in (I), whereas that between the o-toluidine and thiophene rings is 12.9 (1)° in (II). The C16—N2—C17—C18 torsion angle is 11.4 (5)° in (I) and 27.4 (4)° in (II), indicating that the presence of a methyl group in the ortho position in (II) causes rotation about the N2—C17 bond to minimize steric repulsion with the amino H atom. An intramolecular N—H···N hydrogen bond (Tables 2 and 4) in each structure locks the molecule into a rigid pseudo-six-membered ring conformation and removes the conformational flexibility.
The amino H atom is also involved in an intermolecular N—H···O hydrogen bond, and molecular chains are formed. In (I), the chains are along the b axis related by a b-glide plane (1/2 − x, 1/2 + y, z) orthogonal to the a axis. In (II), the chains are along the b axis related by a c-glide plane (x, 1/2 − y, z + 1/2) orthogonal to the b axis. There is no intermolecular C—H···O/S nor π–π interaction in (I). On the other hand, in (II), the chlorophenyl rings are oriented in a manner that facilitates intermolecular π–π interactions, the centre-to-centre distance between the chlorophenyl rings being 3.863 Å. In (II), there are also intermolecular C—H···O/S interactions (Fig. 4 and Table 4).