The molecule of the title compound, C
30H
26N
4O
4S
2, has an inversion centre. The molecule is planar, with a mean devation of 0.179 Å from the least-squares plane defined by the 40 constituent atoms (excluding H atoms). The crystal structure has inversion-related intermolecular N—H
S hydrogen bonds and intramolecular N—H
O hydrogen bonds.
Supporting information
CCDC reference: 647283
Key indicators
- Single-crystal X-ray study
- T = 294 K
- Mean (C-C) = 0.004 Å
- R factor = 0.069
- wR factor = 0.188
- Data-to-parameter ratio = 13.7
checkCIF/PLATON results
No syntax errors found
Alert level B
RINTA01_ALERT_3_B The value of Rint is greater than 0.15
Rint given 0.170
PLAT020_ALERT_3_B The value of Rint is greater than 0.10 ......... 0.17
Alert level C
PLAT250_ALERT_2_C Large U3/U1 Ratio for Average U(i,j) Tensor .... 2.50
PLAT720_ALERT_4_C Number of Unusual/Non-Standard Label(s) ........ 2
0 ALERT level A = In general: serious problem
2 ALERT level B = Potentially serious problem
2 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
1 ALERT type 2 Indicator that the structure model may be wrong or deficient
2 ALERT type 3 Indicator that the structure quality may be low
1 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
Data collection: SMART (Bruker, 1998); cell refinement: SAINT (Bruker, 1998); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 1997); program(s) used to refine structure: SHELXTL; molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 1998); software used to prepare material for publication: SHELXTL.
N-Benzoyl-
N'-(2-{2-[2-(
N-benzoylthioureido)phenoxy]ethoxy}phenyl)thiourea
top
Crystal data top
C30H26N4O4S2 | F(000) = 596 |
Mr = 570.67 | Dx = 1.336 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -p_2yn | Cell parameters from 2068 reflections |
a = 14.1248 (7) Å | θ = 3.0–26.5° |
b = 5.5175 (3) Å | µ = 0.23 mm−1 |
c = 19.179 (1) Å | T = 294 K |
β = 108.408 (2)° | Block, colourless |
V = 1418.21 (13) Å3 | 0.39 × 0.23 × 0.08 mm |
Z = 2 | |
Data collection top
Bruker SMART CCD area-detector diffractometer | 1689 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.170 |
Graphite monochromator | θmax = 25.0°, θmin = 2.2° |
Detector resolution: 10.00 pixels mm-1 | h = −14→16 |
φ and ω scans | k = −6→6 |
6813 measured reflections | l = −21→22 |
2485 independent reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.069 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.188 | H-atom parameters constrained |
S = 0.95 | w = 1/[σ2(Fo2) + (0.0891P)2] where P = (Fo2 + 2Fc2)/3 |
2485 reflections | (Δ/σ)max < 0.001 |
181 parameters | Δρmax = 0.40 e Å−3 |
0 restraints | Δρmin = −0.40 e Å−3 |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S | 0.48978 (5) | 0.17436 (18) | 0.09278 (4) | 0.0734 (4) | |
O1 | 0.16747 (13) | −0.0118 (3) | −0.03308 (10) | 0.0618 (6) | |
O2 | 0.12806 (13) | 0.4622 (4) | 0.05001 (11) | 0.0649 (6) | |
N1 | 0.33694 (15) | −0.0512 (4) | 0.00232 (12) | 0.0537 (6) | |
H1N1 | 0.3840 | −0.1339 | −0.0058 | 0.064* | |
N2 | 0.29423 (15) | 0.2477 (4) | 0.07012 (12) | 0.0496 (6) | |
H2N2 | 0.2355 | 0.1950 | 0.0466 | 0.060* | |
C1 | 0.2323 (2) | −0.3102 (5) | −0.09469 (15) | 0.0517 (7) | |
C2 | 0.3056 (2) | −0.4829 (5) | −0.09043 (17) | 0.0586 (8) | |
H2 | 0.3647 | −0.4790 | −0.0513 | 0.070* | |
C3 | 0.2920 (3) | −0.6585 (5) | −0.1431 (2) | 0.0697 (9) | |
H3 | 0.3421 | −0.7713 | −0.1401 | 0.084* | |
C4 | 0.2036 (3) | −0.6677 (6) | −0.2008 (2) | 0.0772 (10) | |
H4 | 0.1940 | −0.7878 | −0.2364 | 0.093* | |
C5 | 0.1306 (3) | −0.5013 (6) | −0.2056 (2) | 0.0820 (11) | |
H5 | 0.0716 | −0.5069 | −0.2448 | 0.098* | |
C6 | 0.1442 (2) | −0.3242 (6) | −0.15244 (18) | 0.0709 (9) | |
H6 | 0.0935 | −0.2132 | −0.1555 | 0.085* | |
C7 | 0.29591 (18) | 0.4453 (5) | 0.11721 (14) | 0.0475 (7) | |
C8 | 0.20437 (18) | 0.5646 (5) | 0.10427 (14) | 0.0492 (7) | |
C9 | 0.1968 (2) | 0.7652 (6) | 0.14449 (16) | 0.0621 (8) | |
H9 | 0.1361 | 0.8454 | 0.1348 | 0.074* | |
C10 | 0.2801 (2) | 0.8479 (6) | 0.19963 (17) | 0.0670 (9) | |
H10 | 0.2756 | 0.9844 | 0.2269 | 0.080* | |
C11 | 0.3673 (2) | 0.7298 (7) | 0.21351 (18) | 0.0750 (10) | |
H11 | 0.4224 | 0.7846 | 0.2513 | 0.090* | |
C12 | 0.3775 (2) | 0.5302 (6) | 0.17347 (18) | 0.0678 (9) | |
H12 | 0.4388 | 0.4523 | 0.1841 | 0.081* | |
C14 | 0.24112 (19) | −0.1160 (5) | −0.03972 (15) | 0.0507 (7) | |
C13 | 0.36826 (19) | 0.1287 (5) | 0.05589 (14) | 0.0492 (7) | |
C15 | 0.03241 (18) | 0.5768 (6) | 0.03060 (16) | 0.0586 (8) | |
H15A | 0.0360 | 0.7417 | 0.0141 | 0.070* | |
H15B | 0.0070 | 0.5793 | 0.0720 | 0.070* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S | 0.0188 (4) | 0.1374 (9) | 0.0584 (5) | 0.0027 (4) | 0.0041 (4) | −0.0124 (4) |
O1 | 0.0228 (10) | 0.0969 (15) | 0.0622 (12) | 0.0031 (9) | 0.0084 (9) | −0.0125 (10) |
O2 | 0.0243 (10) | 0.0948 (15) | 0.0609 (12) | 0.0137 (9) | −0.0076 (9) | −0.0175 (10) |
N1 | 0.0229 (11) | 0.0876 (16) | 0.0484 (12) | 0.0092 (11) | 0.0082 (10) | 0.0013 (12) |
N2 | 0.0189 (11) | 0.0802 (15) | 0.0471 (12) | −0.0023 (10) | 0.0067 (10) | −0.0005 (11) |
C1 | 0.0355 (15) | 0.0675 (18) | 0.0523 (16) | 0.0025 (12) | 0.0140 (13) | 0.0075 (13) |
C2 | 0.0456 (17) | 0.0677 (19) | 0.0623 (17) | 0.0053 (14) | 0.0172 (15) | 0.0184 (15) |
C3 | 0.066 (2) | 0.0618 (19) | 0.088 (2) | 0.0141 (15) | 0.035 (2) | 0.0076 (17) |
C4 | 0.075 (3) | 0.080 (2) | 0.081 (2) | −0.0023 (19) | 0.031 (2) | −0.0134 (18) |
C5 | 0.053 (2) | 0.108 (3) | 0.078 (2) | 0.002 (2) | 0.0109 (19) | −0.026 (2) |
C6 | 0.0366 (17) | 0.099 (2) | 0.069 (2) | 0.0088 (15) | 0.0052 (16) | −0.0181 (18) |
C7 | 0.0273 (13) | 0.0719 (17) | 0.0396 (13) | −0.0040 (12) | 0.0054 (11) | 0.0050 (13) |
C8 | 0.0279 (14) | 0.0702 (17) | 0.0421 (14) | −0.0024 (12) | 0.0003 (12) | 0.0029 (13) |
C9 | 0.0476 (18) | 0.0756 (19) | 0.0552 (16) | 0.0053 (15) | 0.0051 (15) | −0.0009 (15) |
C10 | 0.055 (2) | 0.081 (2) | 0.0590 (18) | −0.0104 (16) | 0.0098 (16) | −0.0090 (15) |
C11 | 0.0424 (19) | 0.109 (3) | 0.0624 (19) | −0.0237 (18) | 0.0004 (16) | −0.0206 (19) |
C12 | 0.0250 (14) | 0.112 (3) | 0.0590 (17) | −0.0082 (15) | 0.0022 (14) | −0.0093 (17) |
C14 | 0.0264 (14) | 0.0748 (18) | 0.0488 (15) | 0.0033 (12) | 0.0089 (12) | 0.0077 (13) |
C13 | 0.0243 (13) | 0.0821 (19) | 0.0386 (13) | 0.0043 (13) | 0.0060 (11) | 0.0066 (13) |
C15 | 0.0206 (13) | 0.090 (2) | 0.0571 (16) | 0.0107 (13) | 0.0011 (12) | −0.0095 (15) |
Geometric parameters (Å, º) top
S—C13 | 1.656 (3) | C4—H4 | 0.9300 |
O1—C14 | 1.230 (3) | C5—C6 | 1.381 (4) |
O2—C8 | 1.362 (3) | C5—H5 | 0.9300 |
O2—C15 | 1.430 (3) | C6—H6 | 0.9300 |
N1—C14 | 1.386 (3) | C7—C12 | 1.388 (4) |
N1—C13 | 1.396 (4) | C7—C8 | 1.401 (4) |
N1—H1N1 | 0.8600 | C8—C9 | 1.373 (4) |
N2—C13 | 1.334 (3) | C9—C10 | 1.388 (4) |
N2—C7 | 1.411 (3) | C9—H9 | 0.9300 |
N2—H2N2 | 0.8600 | C10—C11 | 1.344 (5) |
C1—C6 | 1.383 (4) | C10—H10 | 0.9300 |
C1—C2 | 1.390 (4) | C11—C12 | 1.376 (4) |
C1—C14 | 1.481 (4) | C11—H11 | 0.9300 |
C2—C3 | 1.369 (4) | C12—H12 | 0.9300 |
C2—H2 | 0.9300 | C15—C15i | 1.502 (5) |
C3—C4 | 1.383 (5) | C15—H15A | 0.9700 |
C3—H3 | 0.9300 | C15—H15B | 0.9700 |
C4—C5 | 1.361 (4) | | |
| | | |
C8—O2—C15 | 118.0 (2) | O2—C8—C9 | 125.5 (2) |
C14—N1—C13 | 129.5 (2) | O2—C8—C7 | 113.8 (3) |
C14—N1—H1N1 | 115.3 | C9—C8—C7 | 120.7 (3) |
C13—N1—H1N1 | 115.3 | C8—C9—C10 | 119.7 (3) |
C13—N2—C7 | 131.0 (2) | C8—C9—H9 | 120.2 |
C13—N2—H2N2 | 114.5 | C10—C9—H9 | 120.2 |
C7—N2—H2N2 | 114.5 | C11—C10—C9 | 119.7 (3) |
C6—C1—C2 | 118.3 (3) | C11—C10—H10 | 120.1 |
C6—C1—C14 | 117.6 (2) | C9—C10—H10 | 120.1 |
C2—C1—C14 | 124.1 (3) | C10—C11—C12 | 121.9 (3) |
C3—C2—C1 | 120.9 (3) | C10—C11—H11 | 119.0 |
C3—C2—H2 | 119.6 | C12—C11—H11 | 119.0 |
C1—C2—H2 | 119.6 | C11—C12—C7 | 119.8 (3) |
C2—C3—C4 | 119.8 (3) | C11—C12—H12 | 120.1 |
C2—C3—H3 | 120.1 | C7—C12—H12 | 120.1 |
C4—C3—H3 | 120.1 | O1—C14—N1 | 121.5 (3) |
C5—C4—C3 | 120.2 (3) | O1—C14—C1 | 121.9 (2) |
C5—C4—H4 | 119.9 | N1—C14—C1 | 116.6 (2) |
C3—C4—H4 | 119.9 | N2—C13—N1 | 114.4 (2) |
C4—C5—C6 | 120.1 (3) | N2—C13—S | 127.7 (2) |
C4—C5—H5 | 120.0 | N1—C13—S | 117.86 (19) |
C6—C5—H5 | 120.0 | O2—C15—C15i | 104.3 (3) |
C5—C6—C1 | 120.7 (3) | O2—C15—H15A | 110.9 |
C5—C6—H6 | 119.6 | C15i—C15—H15A | 110.9 |
C1—C6—H6 | 119.6 | O2—C15—H15B | 110.9 |
C12—C7—C8 | 118.2 (3) | C15i—C15—H15B | 110.9 |
C12—C7—N2 | 126.9 (3) | H15A—C15—H15B | 108.9 |
C8—C7—N2 | 114.9 (2) | | |
Symmetry code: (i) −x, −y+1, −z. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N1···Sii | 0.86 | 2.81 | 3.549 (2) | 145 |
N2—H2N2···O1 | 0.86 | 1.91 | 2.634 (3) | 141 |
N2—H2N2···O2 | 0.86 | 2.13 | 2.547 (3) | 109 |
Symmetry code: (ii) −x+1, −y, −z. |