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The reaction of 2-chloro-5-nitro­pyridine with two equivalents of base produces the title carbanion as an inter­mediate in a ring-opening/ring-closing reaction. The crystal structures of the tetra-n-butyl­ammonium salts of the inter­mediates, C16H36N+·C5H3N2O3-, revealed that pseudo-cis and pseudo-trans isomers are possible. One crystal structure displayed a mixture of the two isomers with approximately 90% pseudo-cis geometry and confirms the structure predicted by the SN(ANRORC) mechanism. The pseudo-cis inter­mediate undergoes a slow isomerization over a period of months to the pseudo-trans isomer, which does not have the appropriate geometry for the subsequent ring-closing reaction. The structure of the pure pseudo-trans isomer is also reported. In both isomers, the negative charge is highly delocalized, but relatively small differences in C-C bond distances indicate a system of conjugated double bonds with the nitro group bearing the negative charge. The packing of the two unit cells is very similar and largely determined by the inter­actions between the planar carbanion and the bulky tetra­hedral cation.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270107019506/ln3045sup1.cif
Contains datablocks global, I_II, II

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108270107019506/ln3045IIsup2.hkl
Contains datablock II

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108270107019506/ln3045I_IIsup3.hkl
Contains datablock I_II

CCDC references: 652513; 652514

Comment top

During the 1980 s, Reinheimer et al. (1980, 1984) investigated the reaction of 2-chloro-5-nitropyridine with an excess of sodium hydroxide in dimethyl sulfoxide/water solutions. Using visible spectroscopy, in addition to 1H and 13C NMR, they were able to show that a relatively stable intermediate was formed. They proposed that the pseudo-cis isomer, (I), would enable the intermediate to undergo the second part of the reaction sequence, namely ring closure. This reaction sequence was named by van???? or Van der Plas (1978) as the SN(ANRORC) process (addition of the nucleophile, ring opening and ring closure) [scheme 1].

If only two equivalents of hydroxide were used, the intermediate formed from 2-chloro-5-nitropyridine was reasonably stable in the reaction medium. However, over a period of months we observed that the intermediate either slowly isomerized or decomposed to formate. We followed these transformations using 1H NMR spectroscopy. In contrast, 2-chloro-3-nitropyridine in the presence of two equivalents of sodium hydroxide forms a pseudo-cis intermediate that, during work-up, readily isomerizes to a pseudo-trans intermediate, (III). The structures of both of the intermediates from 2-chloro-3-nitropyridine were determined using NMR and X-ray crystallography (Haynes & Pett, 2007).

The dramatic difference between the isomerization rates of intermediates from two very similar starting materials prompted us to continue our investigations with the intermediates from 2-chloro-5-nitropyridine. In order to verify our assumptions concerning the structures of the two intermediates, we conducted crystallization experiments with samples containing predominantly one isomer or the other, as indicated by the 1H NMR spectra.

One sample (as the tetra-n-butylammonium salt) gave disordered monoclinic crystals that were found to consist of a mixture of mainly the pseudo-cis isomer, (I), with a small but significant amount of the pseudo-trans isomer, (II) (Fig. 1a). Several crystals from different crystallization attempts were analyzed, resulting in all cases in similar pseudo-cis to pseudo-trans ratios. For the data set used here, the ratio refined to 91.7 (3) to 8.3 (3)% in favor of the pseudo-cis isomer [scheme 2].

The X-ray crystallographic study using the crystals isolated from a sample that was stable in solution for eight months (again as the tetra-n-butylammonium salt) showed that these crystals were made up only of carbanions in the pseudo-trans geometry, (II) (Fig. 1b). This pure isomer also crystallized with the same monoclinic space group, P21/n, and with an almost identical unit cell volume. The two monoclinic cells have comparable unit cell axes and β angles, but the positions of the glide planes differ. Thus, the designation of the unit cell axes is different; a, b and c in the (I/II) mixed crystal are converted into c, a and b in the crystal of pure (II).

The type of packing in the two different cells is very similar (Fig. 2), with layers of the planar carbanions alternating with the tetra-n-butylammonium cations. The orientation of the ions and their orientation with respect to each other is the same in both cells; only the separation between the ions varies slightly between the two structures. The largest difference is observed for the closest distance of the O atoms of adjacent nitro groups, which is 5.6827 (18) Å in (II) and 5.821 (3) Å in (I/II) [the symmetry operator relating the adjacent molecules is (-x + 1, -y + 1, -z + 1)].

Within the layers, the carbanions are arranged in loosely connected dimers. In both pseudo-trans (II) and disordered (I/II), the nitrile groups are arranged in such a way that the N atom interacts with atom H20 of the neighboring anion to form a very weak intermolecular hydrogen bond (Fig. 3). For the pseudo-cis isomer, (I), the interaction is slightly weaker, with a C20···N3 distance of 3.519 (4) Å. For the pseudo-trans geometry, in both types of crystals, the hydrogen bond is slightly strengthened, and the C···N distances are 3.39 (4) and 3.348 (2) Å in the structures of (I/II) and (II), respectively (see Tables 1 and 2 for the hydrogen-bonding parameters.) However, even this slightly shorter hydrogen bond is not unusually strong. A search of the Cambridge Structural Database for nitrile dimers connected via similar hydrogen bonds revealed 58 compounds with both hydrogen bonds equal to or shorter than 2.8 Å (Version ?; Allen, 2002).

In the pseudo-trans geometry, atom H20 also forms an intramolecular hydrogen bond with the aldehyde atom O3, thus possibly stabilizing the pseudo-trans geometry slightly as compared with the pseudo-cis isomer (Tables 1 and 2, and Fig. 3). Nevertheless, all the hydrogen-bonding interactions seem to be rather weak and are probably not a significant directing force towards the overall packing mode. It seems more likely that the packing is determined by the electrostatic interactions between the alternating layers of carbanions and tetra-n-butylammonium cations.

The C—C bonds in carbanions (I), (II) and (III) are shorter than standard single bonds, indicating considerable delocalization of the negative charge over each anion (Table 3). However, the C19—C20 distances in all three anions are significantly shorter than the other C—C bonds and almost as short as a standard double bond. Also, the C18—N2 distances in the nitro group are shorter than a single C—N bond, while the N2—O1 and N2—O2 distances are longer than an NO double bond. The bond distances in these three carbanions exhibit a conjugated system of double bonds, revealing that the electron distribution is clearly directed by the nitro group, the most powerful electron withdrawing substituent in the anions. Thus, the structures coincide with what we would expect from the electronegativities of the atoms.

Related literature top

For related literature, see: Allen (2002); Haynes & Pett (2007); Reinheimer et al. (1980, 1984); Van der Plas (1978).

Experimental top

The original samples of the intermediates as their sodium salts were prepared by following the directions of Reinheimer et al. (1980, 1984). Because of what appeared to be oxidation of the intermediate, one reaction of 2-chloro-5-nitropyridine with sodium hydroxide was carried out in a nitrogen atmosphere. Interestingly, the intermediate formed was (II). That reaction provided the sample of (II) that was used for the crystal structure determination. To produce crystalline material suitable for the vapor diffusion process, tetra-n-butylammonium bromide was added to an aqueous or water/dimethyl sulfoxide solution of the sodium salt. After freeze-drying to remove solvent(s), the tetra-n-butylammonium salt of the intermediate was separated from inorganic salts by extraction with acetone. Evaporation of the acetone gave a solid suitable for crystallization. 1H NMR: pseudo-cis (I) (D2O/D6DMSO): δ 9.75, 6.97, 5.23; pseudo-trans (II) (D2O/D6DMSO): δ 9.80, 7.37, 6.20. Suitable crystals of the tetra-n-butylammonium salts of the mixture of both intermediates were grown by vapor diffusion of hexanes into dichloromethane solutions of the intermediates.

Refinement top

The crystals grown from the original sample exhibit a disorder of the major pseudo-cis intermediate, (I), with a minor presence of the pseudo-trans isomer, (II). The data of several crystals were collected (only the best data set is reported here) and all structures exhibited similar pseudo-cis to pseudo-trans ratios [0.917 (3) to 0.083 (3) for the reported example]. The bond distances within the minor component were restrained to be the same as those of the major component (within a standard deviation of 0.02 Å), and the anisotropic displacement parameters of the minor component atoms were set to be the same as those of the major isomer. Atom C19, which by itself is not disordered, was included in the disorder but the major and minor component atoms were set to have the same coordinates and anisotropic displacement parameters, thus allowing us to add H19 and H19B in calculated positions rather than refining their positions using constraints. In both structures, all H atoms were placed in calculated positions with C—H distances of 0.98, 0.99 and 0.95 Å for methyl, methylene and alkene H atoms, respectively, and were refined with an isotropic displacement parameter of 1.5 (methyl) or 1.2 (methylene, alkene) times Ueq of the adjacent C atom. Methyl H atoms were allowed to rotate to best fit the experimental electron density.

Computing details top

For both compounds, data collection: SMART (Bruker, 1997); cell refinement: SAINT-Plus (Bruker, 2003); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Bruker, 2000); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.

Figures top
[Figure 1] Fig. 1. Displacement ellipsoid diagrams at the 50% probability level of the molecular structures of (a) the pseudo-cis/pseudo-trans mixture, (I/II), showing both components, viz. pseudo-cis intermediate (I) and the pseudo-trans intermediate (II) (B labels), in the disordered structure, and (b) the pure pseudo-trans intermediate, (II).
[Figure 2] Fig. 2. A packing view of the crystal structures with 50% probability displacement ellipsoids, showing the layered nature of the two structures: (a) the disordered structure of the pseudo-cis/pseudo-trans mixture, (I/II), showing both components, and (b) the pure pseudo-trans intermediate, (II).
[Figure 3] Fig. 3. A packing view of the crystal structures: (a) the disordered structure of the mixture showing both the main pseudo-cis intermediate, (I), and the minor pseudo-trans intermediate, (II), and (b) the pure pseudo-trans intermediate, (II). Displacement ellipsoids are drawn at the 50% probability level.
(I_II) tetra-n-butylammonium 4-nitro-5-oxo-2-pentenenitrilate top
Crystal data top
C16H36N+·C5H3N2O3F(000) = 840
Mr = 381.55Dx = 1.158 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 12.2793 (16) ÅCell parameters from 6428 reflections
b = 9.7588 (12) Åθ = 2.7–30.6°
c = 18.422 (2) ŵ = 0.08 mm1
β = 97.444 (2)°T = 100 K
V = 2189.0 (5) Å3Block, colourless
Z = 40.6 × 0.4 × 0.25 mm
Data collection top
Bruker SMART APEX CCD
diffractometer
5406 independent reflections
Radiation source: fine-focus sealed tube4323 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.047
ω scansθmax = 28.3°, θmin = 1.9°
Absorption correction: multi-scan
(SADABS in SAINT-Plus; Bruker, 2003)
h = 1616
Tmin = 0.848, Tmax = 0.981k = 1313
21198 measured reflectionsl = 2423
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.069Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.175H-atom parameters constrained
S = 1.13 w = 1/[σ2(Fo2) + (0.0476P)2 + 2.9417P]
where P = (Fo2 + 2Fc2)/3
5406 reflections(Δ/σ)max < 0.001
258 parametersΔρmax = 0.46 e Å3
3 restraintsΔρmin = 0.22 e Å3
Crystal data top
C16H36N+·C5H3N2O3V = 2189.0 (5) Å3
Mr = 381.55Z = 4
Monoclinic, P21/nMo Kα radiation
a = 12.2793 (16) ŵ = 0.08 mm1
b = 9.7588 (12) ÅT = 100 K
c = 18.422 (2) Å0.6 × 0.4 × 0.25 mm
β = 97.444 (2)°
Data collection top
Bruker SMART APEX CCD
diffractometer
5406 independent reflections
Absorption correction: multi-scan
(SADABS in SAINT-Plus; Bruker, 2003)
4323 reflections with I > 2σ(I)
Tmin = 0.848, Tmax = 0.981Rint = 0.047
21198 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0693 restraints
wR(F2) = 0.175H-atom parameters constrained
S = 1.13Δρmax = 0.46 e Å3
5406 reflectionsΔρmin = 0.22 e Å3
258 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and

goodness of fit S are based on F2, conventional R-factors R are based

on F, with F set to zero for negative F2. The threshold expression of

F2 > σ(F2) is used only for calculating R-factors(gt) etc and is

not relevant to the choice of reflections for refinement. R-factors based

on F2 are statistically about twice as large as those based on F, and R-

factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
C10.66758 (17)0.4305 (2)0.51970 (11)0.0177 (4)
H1A0.62270.47140.55500.021*
H1B0.61720.40700.47500.021*
C20.71834 (17)0.2987 (2)0.55253 (12)0.0198 (4)
H2A0.76180.31790.60060.024*
H2B0.76800.25910.51980.024*
C30.62603 (18)0.1977 (2)0.56196 (12)0.0225 (4)
H3A0.57430.24100.59200.027*
H3B0.58510.17670.51330.027*
C40.6689 (2)0.0647 (2)0.59833 (13)0.0277 (5)
H4B0.70510.08420.64780.042*
H4C0.72160.02260.56950.042*
H4A0.60740.00170.60110.042*
C50.82398 (17)0.5857 (2)0.56707 (11)0.0180 (4)
H5A0.86450.50510.58920.022*
H5B0.87860.64990.55110.022*
C60.76742 (18)0.6557 (2)0.62561 (12)0.0220 (4)
H6A0.71540.59100.64420.026*
H6B0.72500.73540.60410.026*
C70.85114 (18)0.7034 (2)0.68867 (12)0.0244 (5)
H7B0.91040.75480.66900.029*
H7A0.88450.62260.71540.029*
C80.7982 (2)0.7949 (2)0.74164 (12)0.0259 (5)
H8B0.73850.74490.76040.039*
H8C0.76870.87750.71600.039*
H8A0.85340.82100.78260.039*
C90.67666 (17)0.6553 (2)0.46563 (11)0.0174 (4)
H9A0.63090.62000.42140.021*
H9B0.62630.68360.50070.021*
C100.73768 (17)0.7814 (2)0.44421 (12)0.0194 (4)
H10A0.78130.75810.40430.023*
H10B0.78870.81410.48670.023*
C110.65515 (18)0.8942 (2)0.41870 (12)0.0205 (4)
H11A0.60560.86160.37550.025*
H11B0.60980.91410.45810.025*
C120.7123 (2)1.0254 (2)0.39888 (13)0.0253 (5)
H12B0.75461.00690.35840.038*
H12C0.76181.05750.44150.038*
H12A0.65701.09590.38400.038*
C130.82321 (17)0.4830 (2)0.44702 (11)0.0185 (4)
H13A0.87030.55880.43370.022*
H13B0.87200.41310.47310.022*
C140.76606 (18)0.4194 (2)0.37688 (11)0.0201 (4)
H14A0.72690.49120.34580.024*
H14B0.71160.35090.38870.024*
C150.85185 (19)0.3506 (2)0.33596 (13)0.0257 (5)
H15A0.90510.42050.32380.031*
H15B0.89260.28190.36840.031*
C160.8011 (2)0.2806 (2)0.26595 (12)0.0278 (5)
H16B0.76150.34840.23330.042*
H16C0.74990.20950.27780.042*
H16A0.85920.23880.24160.042*
N10.74801 (14)0.53846 (17)0.49969 (9)0.0167 (3)
C170.50529 (19)0.8085 (2)0.77333 (13)0.0268 (5)
H170.50740.87630.73660.032*
C180.50457 (17)0.6675 (2)0.75225 (12)0.0212 (4)
N20.50543 (15)0.6390 (2)0.67769 (10)0.0243 (4)
O10.50716 (13)0.51655 (17)0.65574 (9)0.0273 (4)
O20.50433 (15)0.7341 (2)0.63188 (10)0.0343 (4)
O30.50335 (17)0.84590 (19)0.83661 (10)0.0389 (5)
C190.50129 (18)0.5527 (2)0.79985 (13)0.0237 (5)0.917 (3)
H190.49730.46750.77460.028*0.917 (3)
C200.5026 (5)0.5383 (4)0.87301 (15)0.0262 (7)0.917 (3)
H200.49540.44620.88840.031*0.917 (3)
C210.51271 (19)0.6356 (3)0.93144 (14)0.0240 (5)0.917 (3)
N30.51927 (18)0.6968 (2)0.98476 (12)0.0290 (5)0.917 (3)
C19B0.50129 (18)0.5527 (2)0.79985 (13)0.0237 (5)0.083 (3)
H19B0.48820.46480.77830.028*0.083 (3)
C20B0.516 (7)0.561 (4)0.8742 (10)0.0262 (7)0.083 (3)
H20B0.53230.64670.89750.031*0.083 (3)
C21B0.506 (2)0.440 (2)0.9173 (14)0.0240 (5)0.083 (3)
N3B0.494 (2)0.341 (2)0.9503 (13)0.0290 (5)0.083 (3)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C10.0183 (10)0.0152 (9)0.0199 (9)0.0024 (8)0.0039 (7)0.0002 (7)
C20.0213 (10)0.0146 (9)0.0235 (10)0.0009 (8)0.0034 (8)0.0014 (8)
C30.0258 (11)0.0170 (10)0.0250 (11)0.0033 (8)0.0047 (8)0.0021 (8)
C40.0367 (13)0.0186 (11)0.0282 (12)0.0045 (9)0.0054 (9)0.0032 (9)
C50.0175 (9)0.0147 (9)0.0209 (10)0.0005 (7)0.0001 (7)0.0001 (8)
C60.0209 (10)0.0216 (11)0.0235 (10)0.0001 (8)0.0026 (8)0.0031 (8)
C70.0229 (11)0.0255 (11)0.0247 (11)0.0014 (9)0.0025 (8)0.0023 (9)
C80.0302 (12)0.0250 (11)0.0223 (11)0.0007 (9)0.0030 (9)0.0037 (9)
C90.0182 (9)0.0118 (9)0.0222 (10)0.0013 (7)0.0024 (7)0.0015 (7)
C100.0202 (10)0.0148 (9)0.0234 (10)0.0004 (8)0.0039 (8)0.0019 (8)
C110.0226 (10)0.0154 (10)0.0236 (10)0.0024 (8)0.0038 (8)0.0010 (8)
C120.0311 (12)0.0154 (10)0.0306 (12)0.0011 (9)0.0081 (9)0.0023 (9)
C130.0184 (10)0.0150 (9)0.0232 (10)0.0023 (8)0.0070 (8)0.0007 (8)
C140.0223 (10)0.0171 (10)0.0215 (10)0.0021 (8)0.0054 (8)0.0000 (8)
C150.0243 (11)0.0230 (11)0.0314 (12)0.0033 (9)0.0102 (9)0.0037 (9)
C160.0379 (13)0.0243 (11)0.0224 (11)0.0048 (10)0.0086 (9)0.0005 (9)
N10.0171 (8)0.0131 (8)0.0202 (8)0.0003 (6)0.0037 (6)0.0001 (6)
C170.0276 (12)0.0184 (11)0.0328 (12)0.0019 (9)0.0018 (9)0.0011 (9)
C180.0182 (10)0.0201 (10)0.0251 (10)0.0005 (8)0.0022 (8)0.0035 (8)
N20.0187 (9)0.0264 (10)0.0273 (10)0.0022 (8)0.0018 (7)0.0007 (8)
O10.0262 (8)0.0287 (9)0.0269 (8)0.0030 (7)0.0032 (6)0.0098 (7)
O20.0344 (10)0.0357 (10)0.0325 (9)0.0041 (8)0.0038 (7)0.0058 (8)
O30.0561 (13)0.0232 (9)0.0356 (10)0.0041 (8)0.0006 (9)0.0088 (8)
C190.0233 (11)0.0177 (10)0.0305 (11)0.0010 (8)0.0052 (9)0.0057 (9)
C200.029 (2)0.0205 (16)0.0301 (12)0.0035 (14)0.0070 (10)0.0040 (10)
C210.0182 (11)0.0259 (12)0.0287 (13)0.0014 (9)0.0053 (9)0.0002 (10)
N30.0256 (11)0.0319 (12)0.0298 (12)0.0029 (9)0.0043 (9)0.0071 (9)
C19B0.0233 (11)0.0177 (10)0.0305 (11)0.0010 (8)0.0052 (9)0.0057 (9)
C20B0.029 (2)0.0205 (16)0.0301 (12)0.0035 (14)0.0070 (10)0.0040 (10)
C21B0.0182 (11)0.0259 (12)0.0287 (13)0.0014 (9)0.0053 (9)0.0002 (10)
N3B0.0256 (11)0.0319 (12)0.0298 (12)0.0029 (9)0.0043 (9)0.0071 (9)
Geometric parameters (Å, º) top
C1—C21.520 (3)C11—H11A0.9900
C1—N11.522 (3)C11—H11B0.9900
C1—H1A0.9900C12—H12B0.9800
C1—H1B0.9900C12—H12C0.9800
C2—C31.529 (3)C12—H12A0.9800
C2—H2A0.9900C13—C141.520 (3)
C2—H2B0.9900C13—N11.523 (3)
C3—C41.523 (3)C13—H13A0.9900
C3—H3A0.9900C13—H13B0.9900
C3—H3B0.9900C14—C151.528 (3)
C4—H4B0.9800C14—H14A0.9900
C4—H4C0.9800C14—H14B0.9900
C4—H4A0.9800C15—C161.520 (3)
C5—C61.518 (3)C15—H15A0.9900
C5—N11.524 (3)C15—H15B0.9900
C5—H5A0.9900C16—H16B0.9800
C5—H5B0.9900C16—H16C0.9800
C6—C71.521 (3)C16—H16A0.9800
C6—H6A0.9900C17—O31.225 (3)
C6—H6B0.9900C17—C181.429 (3)
C7—C81.529 (3)C17—H170.9500
C7—H7B0.9900C18—N21.403 (3)
C7—H7A0.9900C18—C191.427 (3)
C8—H8B0.9800N2—O21.253 (3)
C8—H8C0.9800N2—O11.263 (3)
C8—H8A0.9800C19—C201.353 (4)
C9—C101.520 (3)C19—H190.9500
C9—N11.522 (3)C20—C211.428 (4)
C9—H9A0.9900C20—H200.9500
C9—H9B0.9900C21—N31.143 (3)
C10—C111.528 (3)C20B—C21B1.44 (2)
C10—H10A0.9900C20B—H20B0.9500
C10—H10B0.9900C21B—N3B1.163 (18)
C11—C121.527 (3)
C2—C1—N1115.89 (17)C12—C11—C10111.75 (18)
C2—C1—H1A108.3C12—C11—H11A109.3
N1—C1—H1A108.3C10—C11—H11A109.3
C2—C1—H1B108.3C12—C11—H11B109.3
N1—C1—H1B108.3C10—C11—H11B109.3
H1A—C1—H1B107.4H11A—C11—H11B107.9
C1—C2—C3108.59 (17)C11—C12—H12B109.5
C1—C2—H2A110.0C11—C12—H12C109.5
C3—C2—H2A110.0H12B—C12—H12C109.5
C1—C2—H2B110.0C11—C12—H12A109.5
C3—C2—H2B110.0H12B—C12—H12A109.5
H2A—C2—H2B108.4H12C—C12—H12A109.5
C4—C3—C2112.38 (19)C14—C13—N1115.80 (17)
C4—C3—H3A109.1C14—C13—H13A108.3
C2—C3—H3A109.1N1—C13—H13A108.3
C4—C3—H3B109.1C14—C13—H13B108.3
C2—C3—H3B109.1N1—C13—H13B108.3
H3A—C3—H3B107.9H13A—C13—H13B107.4
C3—C4—H4B109.5C13—C14—C15109.07 (18)
C3—C4—H4C109.5C13—C14—H14A109.9
H4B—C4—H4C109.5C15—C14—H14A109.9
C3—C4—H4A109.5C13—C14—H14B109.9
H4B—C4—H4A109.5C15—C14—H14B109.9
H4C—C4—H4A109.5H14A—C14—H14B108.3
C6—C5—N1115.24 (17)C16—C15—C14112.53 (19)
C6—C5—H5A108.5C16—C15—H15A109.1
N1—C5—H5A108.5C14—C15—H15A109.1
C6—C5—H5B108.5C16—C15—H15B109.1
N1—C5—H5B108.5C14—C15—H15B109.1
H5A—C5—H5B107.5H15A—C15—H15B107.8
C5—C6—C7110.73 (18)C15—C16—H16B109.5
C5—C6—H6A109.5C15—C16—H16C109.5
C7—C6—H6A109.5H16B—C16—H16C109.5
C5—C6—H6B109.5C15—C16—H16A109.5
C7—C6—H6B109.5H16B—C16—H16A109.5
H6A—C6—H6B108.1H16C—C16—H16A109.5
C6—C7—C8111.41 (19)C1—N1—C9105.15 (15)
C6—C7—H7B109.3C1—N1—C13111.98 (15)
C8—C7—H7B109.3C9—N1—C13111.56 (15)
C6—C7—H7A109.3C1—N1—C5111.12 (15)
C8—C7—H7A109.3C9—N1—C5111.58 (15)
H7B—C7—H7A108.0C13—N1—C5105.59 (15)
C7—C8—H8B109.5O3—C17—C18123.1 (2)
C7—C8—H8C109.5O3—C17—H17118.5
H8B—C8—H8C109.5C18—C17—H17118.5
C7—C8—H8A109.5N2—C18—C19116.78 (19)
H8B—C8—H8A109.5N2—C18—C17117.1 (2)
H8C—C8—H8A109.5C19—C18—C17126.1 (2)
C10—C9—N1115.90 (17)O2—N2—O1118.96 (19)
C10—C9—H9A108.3O2—N2—C18120.8 (2)
N1—C9—H9A108.3O1—N2—C18120.24 (19)
C10—C9—H9B108.3C20—C19—C18134.1 (2)
N1—C9—H9B108.3C20—C19—H19113.0
H9A—C9—H9B107.4C18—C19—H19113.0
C9—C10—C11109.49 (17)C19—C20—C21132.1 (3)
C9—C10—H10A109.8C19—C20—H20113.9
C11—C10—H10A109.8C21—C20—H20113.9
C9—C10—H10B109.8N3—C21—C20169.7 (3)
C11—C10—H10B109.8C21B—C20B—H20B120.0
H10A—C10—H10B108.2N3B—C21B—C20B177 (4)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C20—H20···N3i0.952.753.519 (4)139
C20B—H20B···N3Bi0.952.873.39 (4)116
C20B—H20B···O30.952.252.86 (4)122
Symmetry code: (i) x+1, y+1, z+2.
(II) tetra-n-butylammonium 4-nitro-5-oxo-2-pentenenitrilate top
Crystal data top
C16H36N+·C5H3N2O3F(000) = 840
Mr = 381.55Dx = 1.157 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 9.7894 (9) ÅCell parameters from 7740 reflections
b = 18.3872 (16) Åθ = 2.5–30.5°
c = 12.2327 (11) ŵ = 0.08 mm1
β = 95.894 (2)°T = 100 K
V = 2190.2 (3) Å3Plate, yellow
Z = 40.73 × 0.59 × 0.10 mm
Data collection top
Bruker SMART APEX CCD
diffractometer
5402 independent reflections
Radiation source: fine-focus sealed tube4809 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.033
ω scansθmax = 28.3°, θmin = 2.0°
Absorption correction: multi-scan
(SADABS in SAINT-Plus; Bruker, 2003)
h = 1212
Tmin = 0.792, Tmax = 0.992k = 2424
18699 measured reflectionsl = 1616
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.136H-atom parameters constrained
S = 1.19 w = 1/[σ2(Fo2) + (0.046P)2 + 1.24P]
where P = (Fo2 + 2Fc2)/3
5402 reflections(Δ/σ)max < 0.001
248 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = 0.18 e Å3
Crystal data top
C16H36N+·C5H3N2O3V = 2190.2 (3) Å3
Mr = 381.55Z = 4
Monoclinic, P21/nMo Kα radiation
a = 9.7894 (9) ŵ = 0.08 mm1
b = 18.3872 (16) ÅT = 100 K
c = 12.2327 (11) Å0.73 × 0.59 × 0.10 mm
β = 95.894 (2)°
Data collection top
Bruker SMART APEX CCD
diffractometer
5402 independent reflections
Absorption correction: multi-scan
(SADABS in SAINT-Plus; Bruker, 2003)
4809 reflections with I > 2σ(I)
Tmin = 0.792, Tmax = 0.992Rint = 0.033
18699 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0580 restraints
wR(F2) = 0.136H-atom parameters constrained
S = 1.19Δρmax = 0.40 e Å3
5402 reflectionsΔρmin = 0.18 e Å3
248 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and

goodness of fit S are based on F2, conventional R-factors R are based

on F, with F set to zero for negative F2. The threshold expression of

F2 > σ(F2) is used only for calculating R-factors(gt) etc and is

not relevant to the choice of reflections for refinement. R-factors based

on F2 are statistically about twice as large as those based on F, and R-

factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C10.63204 (14)0.54280 (8)0.32202 (11)0.0164 (3)
H1A0.60310.58200.37020.020*
H1B0.66660.50200.37000.020*
C20.74961 (15)0.57108 (8)0.26236 (12)0.0183 (3)
H2A0.71950.61440.21830.022*
H2B0.77860.53330.21190.022*
C30.87024 (15)0.59110 (8)0.34724 (12)0.0189 (3)
H3A0.83920.62760.39880.023*
H3B0.90010.54730.39020.023*
C40.99152 (16)0.62164 (9)0.29370 (14)0.0248 (3)
H4A1.02250.58570.24250.037*
H4B1.06670.63260.35050.037*
H4C0.96350.66620.25360.037*
C50.44491 (15)0.57737 (8)0.17477 (12)0.0169 (3)
H5A0.51660.59530.13000.020*
H5B0.36980.55680.12370.020*
C60.38857 (15)0.64184 (8)0.23411 (12)0.0187 (3)
H6A0.46320.66420.28370.022*
H6B0.31660.62490.27940.022*
C70.32799 (17)0.69845 (8)0.15138 (12)0.0216 (3)
H7A0.40320.72130.11530.026*
H7B0.26590.67390.09390.026*
C80.24848 (16)0.75733 (8)0.20554 (13)0.0227 (3)
H8A0.17080.73530.23780.034*
H8B0.21430.79330.15030.034*
H8C0.30920.78130.26330.034*
C90.40544 (14)0.49097 (8)0.32781 (11)0.0162 (3)
H9A0.44960.45140.37360.019*
H9B0.38880.53180.37760.019*
C100.26728 (15)0.46365 (8)0.27566 (12)0.0187 (3)
H10A0.27960.41840.23380.022*
H10B0.22390.50060.22440.022*
C110.17640 (16)0.44895 (8)0.36777 (13)0.0209 (3)
H11A0.22440.41470.42110.025*
H11B0.16250.49500.40700.025*
C120.03667 (16)0.41727 (9)0.32632 (15)0.0262 (3)
H12A0.01080.45050.27240.039*
H12B0.01830.41090.38820.039*
H12C0.04930.37000.29160.039*
C130.54293 (15)0.45516 (8)0.17377 (12)0.0173 (3)
H13A0.45710.43610.13410.021*
H13B0.59910.47550.11830.021*
C140.62082 (16)0.39207 (8)0.23095 (12)0.0212 (3)
H14A0.56790.37250.28910.025*
H14B0.71040.40950.26620.025*
C150.64426 (17)0.33200 (8)0.14898 (13)0.0226 (3)
H15A0.55750.30490.13080.027*
H15B0.67040.35420.08040.027*
C160.75587 (17)0.27925 (9)0.19360 (15)0.0268 (3)
H16A0.84270.30550.20950.040*
H16B0.76680.24130.13890.040*
H16C0.73010.25690.26120.040*
N10.50602 (12)0.51662 (6)0.24910 (9)0.0153 (2)
C170.20257 (17)0.77034 (9)0.50905 (13)0.0254 (3)
H170.13750.73240.51340.030*
C180.34253 (16)0.75045 (8)0.50268 (12)0.0203 (3)
C190.45254 (16)0.80048 (8)0.49434 (12)0.0202 (3)
H190.54140.78030.49120.024*
N20.37436 (14)0.67619 (7)0.50370 (10)0.0214 (3)
O10.49752 (12)0.65604 (6)0.50463 (9)0.0251 (3)
O20.28071 (13)0.62929 (6)0.50371 (10)0.0289 (3)
O30.16086 (12)0.83358 (7)0.50927 (11)0.0317 (3)
C200.44254 (16)0.87390 (8)0.49049 (13)0.0225 (3)
H200.35570.89650.49360.027*
C210.56115 (17)0.91752 (9)0.48180 (13)0.0244 (3)
N30.65593 (16)0.95393 (8)0.47543 (13)0.0312 (3)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C10.0139 (6)0.0180 (7)0.0169 (6)0.0007 (5)0.0006 (5)0.0018 (5)
C20.0161 (7)0.0200 (7)0.0189 (7)0.0029 (5)0.0015 (5)0.0007 (5)
C30.0158 (7)0.0202 (7)0.0203 (7)0.0012 (5)0.0003 (5)0.0001 (5)
C40.0174 (7)0.0287 (8)0.0281 (8)0.0041 (6)0.0007 (6)0.0028 (6)
C50.0168 (7)0.0162 (7)0.0174 (6)0.0002 (5)0.0001 (5)0.0032 (5)
C60.0199 (7)0.0170 (7)0.0191 (7)0.0007 (5)0.0008 (5)0.0012 (5)
C70.0257 (8)0.0182 (7)0.0204 (7)0.0024 (6)0.0008 (6)0.0023 (5)
C80.0245 (8)0.0163 (7)0.0271 (8)0.0004 (6)0.0019 (6)0.0018 (6)
C90.0153 (7)0.0165 (6)0.0171 (6)0.0009 (5)0.0035 (5)0.0016 (5)
C100.0164 (7)0.0189 (7)0.0209 (7)0.0026 (5)0.0020 (5)0.0002 (5)
C110.0186 (7)0.0210 (7)0.0237 (7)0.0019 (6)0.0051 (6)0.0005 (6)
C120.0191 (8)0.0246 (8)0.0355 (9)0.0029 (6)0.0063 (6)0.0024 (7)
C130.0176 (7)0.0173 (7)0.0171 (7)0.0006 (5)0.0017 (5)0.0027 (5)
C140.0244 (8)0.0194 (7)0.0198 (7)0.0048 (6)0.0017 (6)0.0011 (6)
C150.0255 (8)0.0177 (7)0.0246 (7)0.0008 (6)0.0027 (6)0.0036 (6)
C160.0249 (8)0.0190 (7)0.0366 (9)0.0011 (6)0.0037 (7)0.0049 (6)
N10.0137 (6)0.0157 (6)0.0166 (6)0.0004 (4)0.0014 (4)0.0003 (4)
C170.0218 (8)0.0293 (8)0.0248 (8)0.0013 (6)0.0009 (6)0.0062 (6)
C180.0225 (8)0.0205 (7)0.0175 (7)0.0023 (6)0.0005 (5)0.0021 (5)
C190.0202 (7)0.0240 (7)0.0163 (7)0.0038 (6)0.0011 (5)0.0015 (5)
N20.0275 (7)0.0211 (6)0.0150 (6)0.0012 (5)0.0001 (5)0.0012 (5)
O10.0278 (6)0.0212 (5)0.0257 (6)0.0073 (5)0.0006 (5)0.0014 (4)
O20.0343 (7)0.0237 (6)0.0281 (6)0.0067 (5)0.0006 (5)0.0016 (5)
O30.0219 (6)0.0317 (6)0.0408 (7)0.0068 (5)0.0006 (5)0.0092 (5)
C200.0208 (7)0.0226 (7)0.0238 (7)0.0031 (6)0.0010 (6)0.0011 (6)
C210.0269 (8)0.0196 (7)0.0265 (8)0.0064 (6)0.0015 (6)0.0002 (6)
N30.0269 (8)0.0227 (7)0.0439 (9)0.0023 (6)0.0038 (6)0.0027 (6)
Geometric parameters (Å, º) top
C1—C21.517 (2)C10—H10B0.9900
C1—N11.5243 (17)C11—C121.525 (2)
C1—H1A0.9900C11—H11A0.9900
C1—H1B0.9900C11—H11B0.9900
C2—C31.5350 (19)C12—H12A0.9800
C2—H2A0.9900C12—H12B0.9800
C2—H2B0.9900C12—H12C0.9800
C3—C41.521 (2)C13—C141.519 (2)
C3—H3A0.9900C13—N11.5248 (18)
C3—H3B0.9900C13—H13A0.9900
C4—H4A0.9800C13—H13B0.9900
C4—H4B0.9800C14—C151.525 (2)
C4—H4C0.9800C14—H14A0.9900
C5—C61.523 (2)C14—H14B0.9900
C5—N11.5233 (17)C15—C161.520 (2)
C5—H5A0.9900C15—H15A0.9900
C5—H5B0.9900C15—H15B0.9900
C6—C71.528 (2)C16—H16A0.9800
C6—H6A0.9900C16—H16B0.9800
C6—H6B0.9900C16—H16C0.9800
C7—C81.524 (2)C17—O31.233 (2)
C7—H7A0.9900C17—C181.428 (2)
C7—H7B0.9900C17—H170.9500
C8—H8A0.9800C18—N21.400 (2)
C8—H8B0.9800C18—C191.428 (2)
C8—H8C0.9800C19—C201.354 (2)
C9—C101.5203 (19)C19—H190.9500
C9—N11.5211 (18)N2—O21.2586 (18)
C9—H9A0.9900N2—O11.2602 (18)
C9—H9B0.9900C20—C211.424 (2)
C10—C111.530 (2)C20—H200.9500
C10—H10A0.9900C21—N31.153 (2)
C2—C1—N1115.80 (11)H10A—C10—H10B108.4
C2—C1—H1A108.3C12—C11—C10113.10 (13)
N1—C1—H1A108.3C12—C11—H11A109.0
C2—C1—H1B108.3C10—C11—H11A109.0
N1—C1—H1B108.3C12—C11—H11B109.0
H1A—C1—H1B107.4C10—C11—H11B109.0
C1—C2—C3109.02 (12)H11A—C11—H11B107.8
C1—C2—H2A109.9C11—C12—H12A109.5
C3—C2—H2A109.9C11—C12—H12B109.5
C1—C2—H2B109.9H12A—C12—H12B109.5
C3—C2—H2B109.9C11—C12—H12C109.5
H2A—C2—H2B108.3H12A—C12—H12C109.5
C4—C3—C2112.18 (12)H12B—C12—H12C109.5
C4—C3—H3A109.2C14—C13—N1115.26 (11)
C2—C3—H3A109.2C14—C13—H13A108.5
C4—C3—H3B109.2N1—C13—H13A108.5
C2—C3—H3B109.2C14—C13—H13B108.5
H3A—C3—H3B107.9N1—C13—H13B108.5
C3—C4—H4A109.5H13A—C13—H13B107.5
C3—C4—H4B109.5C13—C14—C15110.65 (12)
H4A—C4—H4B109.5C13—C14—H14A109.5
C3—C4—H4C109.5C15—C14—H14A109.5
H4A—C4—H4C109.5C13—C14—H14B109.5
H4B—C4—H4C109.5C15—C14—H14B109.5
C6—C5—N1115.19 (11)H14A—C14—H14B108.1
C6—C5—H5A108.5C16—C15—C14112.16 (13)
N1—C5—H5A108.5C16—C15—H15A109.2
C6—C5—H5B108.5C14—C15—H15A109.2
N1—C5—H5B108.5C16—C15—H15B109.2
H5A—C5—H5B107.5C14—C15—H15B109.2
C5—C6—C7110.46 (12)H15A—C15—H15B107.9
C5—C6—H6A109.6C15—C16—H16A109.5
C7—C6—H6A109.6C15—C16—H16B109.5
C5—C6—H6B109.6H16A—C16—H16B109.5
C7—C6—H6B109.6C15—C16—H16C109.5
H6A—C6—H6B108.1H16A—C16—H16C109.5
C8—C7—C6112.13 (13)H16B—C16—H16C109.5
C8—C7—H7A109.2C9—N1—C5111.42 (11)
C6—C7—H7A109.2C9—N1—C1105.37 (10)
C8—C7—H7B109.2C5—N1—C1111.25 (10)
C6—C7—H7B109.2C9—N1—C13111.21 (11)
H7A—C7—H7B107.9C5—N1—C13106.60 (10)
C7—C8—H8A109.5C1—N1—C13111.10 (11)
C7—C8—H8B109.5O3—C17—C18124.18 (16)
H8A—C8—H8B109.5O3—C17—H17117.9
C7—C8—H8C109.5C18—C17—H17117.9
H8A—C8—H8C109.5N2—C18—C17117.60 (14)
H8B—C8—H8C109.5N2—C18—C19117.39 (14)
C10—C9—N1116.27 (11)C17—C18—C19125.01 (14)
C10—C9—H9A108.2C20—C19—C18126.33 (15)
N1—C9—H9A108.2C20—C19—H19116.8
C10—C9—H9B108.2C18—C19—H19116.8
N1—C9—H9B108.2O2—N2—O1119.66 (13)
H9A—C9—H9B107.4O2—N2—C18120.44 (13)
C9—C10—C11107.99 (12)O1—N2—C18119.90 (13)
C9—C10—H10A110.1C19—C20—C21120.49 (15)
C11—C10—H10A110.1C19—C20—H20119.8
C9—C10—H10B110.1C21—C20—H20119.8
C11—C10—H10B110.1N3—C21—C20178.74 (18)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C20—H20···N3i0.952.783.348 (2)119
C20—H20···O30.952.262.887 (2)123
Symmetry code: (i) x+1, y+2, z+1.

Experimental details

(I_II)(II)
Crystal data
Chemical formulaC16H36N+·C5H3N2O3C16H36N+·C5H3N2O3
Mr381.55381.55
Crystal system, space groupMonoclinic, P21/nMonoclinic, P21/n
Temperature (K)100100
a, b, c (Å)12.2793 (16), 9.7588 (12), 18.422 (2)9.7894 (9), 18.3872 (16), 12.2327 (11)
β (°) 97.444 (2) 95.894 (2)
V3)2189.0 (5)2190.2 (3)
Z44
Radiation typeMo KαMo Kα
µ (mm1)0.080.08
Crystal size (mm)0.6 × 0.4 × 0.250.73 × 0.59 × 0.10
Data collection
DiffractometerBruker SMART APEX CCD
diffractometer
Bruker SMART APEX CCD
diffractometer
Absorption correctionMulti-scan
(SADABS in SAINT-Plus; Bruker, 2003)
Multi-scan
(SADABS in SAINT-Plus; Bruker, 2003)
Tmin, Tmax0.848, 0.9810.792, 0.992
No. of measured, independent and
observed [I > 2σ(I)] reflections
21198, 5406, 4323 18699, 5402, 4809
Rint0.0470.033
(sin θ/λ)max1)0.6670.667
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.069, 0.175, 1.13 0.058, 0.136, 1.19
No. of reflections54065402
No. of parameters258248
No. of restraints30
H-atom treatmentH-atom parameters constrainedH-atom parameters constrained
Δρmax, Δρmin (e Å3)0.46, 0.220.40, 0.18

Computer programs: SMART (Bruker, 1997), SAINT-Plus (Bruker, 2003), SAINT-Plus, SHELXTL (Bruker, 2000), SHELXTL.

Hydrogen-bond geometry (Å, º) for (I_II) top
D—H···AD—HH···AD···AD—H···A
C20—H20···N3i0.952.753.519 (4)139
C20B—H20B···N3Bi0.952.873.39 (4)116
C20B—H20B···O30.952.252.86 (4)122
Symmetry code: (i) x+1, y+1, z+2.
Hydrogen-bond geometry (Å, º) for (II) top
D—H···AD—HH···AD···AD—H···A
C20—H20···N3i0.952.783.348 (2)119
C20—H20···O30.952.262.887 (2)123
Symmetry code: (i) x+1, y+2, z+1.
Table 3. A comparison of selected bond lengths (Å) in (I), (II) and (III). top
Compound(I)a(II)b(II)c(III)d
O3—C171.225 (3)1.233 (2)1.225 (3)1.249 (3)
C17—C181.429 (3)1.428 (2)1.429 (3)1.421 (3)
C18—C191.427 (3)1.428 (2)1.427 (3)1.361 (3)
C19—C201.353 (4)1.354 (2)1.353 (4)1.408 (3)
C20—C211.428 (4)1.424 (2)1.44 (2)1.418 (3)
C18—N21.403 (3)1.400 (2)1.403 (3)1.378 (3)
C21—N31.143 (3)1.153 (2)1.163 (18)1.150 (3)
N2—O11.263 (3)1.2602 (18)1.263 (3)1.246 (2)
N2—O21.253 (3)1.2586 (18)1.253 (3)1.264 (3)
Notes: (a) this work, pseudo-cis isomer, cocrystallized sample (I/II); (b) this work, pure pseudo-trans sample (II); (c) this work, pseudo-trans isomer, cocrystallized sample (I/II); (d) Haynes & Pett (2007), (III); the same atom numbering as in samples (I/II) and (II) is used here for consistency.
 

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