High-resolution X-ray diffraction experiments and atom-specific X-ray absorption experiments are applied to investigate a series of square planar complexes with the non-innocent ligand of maleonitriledithiolate (mnt), [S2C2(CN)2]z−, containing M—S bonds. Four complexes of (PyH)z[M(mnt)2]z−, where M = Ni or Cu, z = 2 or 1 and PyH+ = C5NH6+, were studied in order to clarify whether such one-electron oxidation–reduction, [M(mnt)2]2−/[M(mnt)2]1−, is taking place at the metal or the ligand site. Combining the techniques of metal K-, L-edge and S K-edge X-ray absorption spectroscopy with high-resolution X-ray charge density studies, it is unambiguously demonstrated that the electron redox reaction is ligand based and metal based for Ni and Cu pairs, respectively. The bonding characters in terms of topological properties associated with the bond critical points are compared between the oxidized form [ML]− and the reduced form [ML]2−. In the case of Ni complexes, the formal oxidation state of Ni remains as Ni2+ and each mnt ligand carries a 2− charge in [Ni(mnt)2]2−, but only one of the ligands is formally oxidized in [Ni(mnt)2]1−. In contrast, in the case of Cu complexes, the mnt remains as 2− in both complexes, but the formal oxidation states of the metal are Cu2+ and Cu3+. Bond characterizations and d-orbital populations will be presented. The complementary results of XAS, XRD and DFT calculations will be discussed. The conclusion on the redox reactions in these complexes can be firmly established.
Supporting information
CCDC references: 1525429; 1525430; 1525431; 1525432; 1544718; 1544719
Data collection: NONIUS COLLECT for CCDC_1525429, CCDC_1525430, CCDC_1525431, CCDC_1525432; ? for CCDC_1544718. Cell refinement: DENZO-SMN for CCDC_1525429, CCDC_1525430, CCDC_1525431, CCDC_1525432; ? for CCDC_1544718. Data reduction: DENZO-SMN for CCDC_1525429, CCDC_1525430, CCDC_1525431, CCDC_1525432; ? for CCDC_1544718. Program(s) used to solve structure: SHELXS97 (Sheldrick, 1990) for CCDC_1525429, CCDC_1525430, CCDC_1525431, CCDC_1525432; SHELXS97 (Sheldrick, 2008) for CCDC_1544718, CCDC_1544719. Program(s) used to refine structure: SHELXL97 (Sheldrick, 1997) for CCDC_1525429, CCDC_1525430, CCDC_1525431, CCDC_1525432; SHELXL97 (Sheldrick, 2008) for CCDC_1544718, CCDC_1544719. For all structures, molecular graphics: Bruker SHELXTL; software used to prepare material for publication: Bruker SHELXTL.
Crystal data top
C18H12N6NiS4 | Z = 1 |
Mr = 499.29 | F(000) = 254 |
Triclinic, P1 | Dx = 1.626 Mg m−3 |
a = 7.4460 (3) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 8.8942 (4) Å | Cell parameters from 10618 reflections |
c = 9.2799 (6) Å | θ = 2.5–50.0° |
α = 114.992 (3)° | µ = 1.38 mm−1 |
β = 94.904 (4)° | T = 100 K |
γ = 108.680 (3)° | Block, red |
V = 509.94 (5) Å3 | 0.30 × 0.20 × 0.20 mm |
Data collection top
CCD area detector diffractometer | 9918 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.000 |
Graphite monochromator | θmax = 50.0°, θmin = 2.5° |
Absorption correction: multi-scan sadabs | h = −16→15 |
Tmin = 0.683, Tmax = 0.770 | k = −19→17 |
10618 measured reflections | l = 0→19 |
10618 independent reflections | |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.019 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.057 | w = 1/[σ2(Fo2) + (0.0295P)2 + 0.0587P] where P = (Fo2 + 2Fc2)/3 |
S = 1.11 | (Δ/σ)max = 0.003 |
10618 reflections | Δρmax = 0.76 e Å−3 |
158 parameters | Δρmin = −0.78 e Å−3 |
0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0076 (15) |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and
goodness of fit S are based on F2, conventional R-factors R are based
on F, with F set to zero for negative F2. The threshold expression of
F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is
not relevant to the choice of reflections for refinement. R-factors based
on F2 are statistically about twice as large as those based on F, and R-
factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Ni | 0.0000 | 0.5000 | 0.5000 | 0.008910 (10) | |
S1 | 0.317374 (14) | 0.603532 (14) | 0.579192 (12) | 0.01237 (2) | |
S2 | 0.011539 (14) | 0.580577 (14) | 0.309528 (13) | 0.01265 (2) | |
N3 | 0.87139 (6) | 0.86157 (5) | 0.19770 (5) | 0.01601 (5) | |
N1 | 0.76338 (5) | 0.88534 (6) | 0.51254 (5) | 0.01721 (5) | |
N2 | 0.36025 (7) | 0.80512 (7) | 0.13303 (6) | 0.02260 (7) | |
C8 | 0.78344 (7) | 1.04004 (6) | 0.10149 (5) | 0.01543 (5) | |
C9 | 0.85770 (7) | 1.01847 (6) | 0.22901 (5) | 0.01637 (6) | |
C1 | 0.39412 (5) | 0.70371 (5) | 0.45894 (4) | 0.01113 (4) | |
C6 | 0.73909 (8) | 0.73712 (6) | −0.08601 (6) | 0.01998 (7) | |
C3 | 0.59827 (5) | 0.80096 (5) | 0.48744 (5) | 0.01285 (5) | |
C4 | 0.31959 (6) | 0.75788 (6) | 0.22885 (5) | 0.01458 (5) | |
C7 | 0.72268 (7) | 0.89780 (6) | −0.05724 (5) | 0.01598 (6) | |
C2 | 0.26083 (5) | 0.69056 (5) | 0.33871 (5) | 0.01142 (4) | |
C5 | 0.81473 (8) | 0.72133 (6) | 0.04519 (6) | 0.01914 (7) | |
H7 | 0.6700 (18) | 0.9073 (16) | −0.1419 (15) | 0.030 (3)* | |
H9 | 0.8994 (18) | 1.1037 (16) | 0.3354 (15) | 0.031 (3)* | |
H8 | 0.7728 (17) | 1.1529 (15) | 0.1262 (14) | 0.026 (3)* | |
H5 | 0.8283 (19) | 0.6188 (17) | 0.0356 (16) | 0.036 (3)* | |
H3 | 0.9162 (17) | 0.8506 (15) | 0.2800 (15) | 0.029 (3)* | |
H6 | 0.6977 (19) | 0.6320 (16) | −0.1946 (15) | 0.033 (3)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Ni | 0.00772 (2) | 0.00913 (2) | 0.00989 (2) | 0.00302 (2) | 0.00179 (2) | 0.00487 (2) |
S1 | 0.00868 (3) | 0.01653 (4) | 0.01342 (3) | 0.00398 (3) | 0.00212 (2) | 0.00929 (3) |
S2 | 0.00935 (3) | 0.01618 (4) | 0.01432 (3) | 0.00400 (3) | 0.00190 (2) | 0.00988 (3) |
N3 | 0.01878 (13) | 0.01813 (12) | 0.01231 (10) | 0.00877 (11) | 0.00203 (9) | 0.00755 (10) |
N1 | 0.01059 (10) | 0.01991 (13) | 0.01920 (13) | 0.00246 (10) | 0.00283 (9) | 0.01042 (11) |
N2 | 0.02243 (17) | 0.0300 (2) | 0.02538 (18) | 0.01021 (15) | 0.00966 (14) | 0.02128 (17) |
C8 | 0.01803 (14) | 0.01354 (12) | 0.01387 (12) | 0.00697 (11) | 0.00232 (10) | 0.00560 (10) |
C9 | 0.01966 (15) | 0.01592 (13) | 0.01138 (11) | 0.00804 (12) | 0.00205 (10) | 0.00427 (10) |
C1 | 0.00929 (10) | 0.01148 (10) | 0.01210 (10) | 0.00327 (8) | 0.00250 (8) | 0.00583 (9) |
C6 | 0.0276 (2) | 0.01572 (14) | 0.01277 (13) | 0.01071 (14) | −0.00166 (13) | 0.00312 (11) |
C3 | 0.01000 (10) | 0.01383 (11) | 0.01360 (11) | 0.00323 (9) | 0.00278 (9) | 0.00668 (10) |
C4 | 0.01382 (12) | 0.01655 (13) | 0.01683 (13) | 0.00575 (10) | 0.00490 (10) | 0.01094 (11) |
C7 | 0.01927 (15) | 0.01563 (13) | 0.01231 (12) | 0.00771 (11) | 0.00069 (10) | 0.00605 (10) |
C2 | 0.01045 (10) | 0.01195 (10) | 0.01283 (11) | 0.00404 (8) | 0.00295 (8) | 0.00703 (9) |
C5 | 0.02529 (19) | 0.01543 (13) | 0.01567 (14) | 0.01035 (13) | −0.00013 (13) | 0.00583 (11) |
Geometric parameters (Å, º) top
Ni—S2i | 2.1685 (2) | N2—C4 | 1.1572 (6) |
Ni—S2 | 2.1685 (2) | C8—C9 | 1.3751 (6) |
Ni—S1 | 2.1702 (2) | C8—C7 | 1.3855 (6) |
Ni—S1i | 2.1702 (2) | C1—C2 | 1.3673 (5) |
S1—C1 | 1.7288 (4) | C1—C3 | 1.4228 (5) |
S2—C2 | 1.7329 (4) | C6—C5 | 1.3773 (6) |
N3—C9 | 1.3401 (6) | C6—C7 | 1.3870 (6) |
N3—C5 | 1.3438 (6) | C4—C2 | 1.4190 (5) |
N1—C3 | 1.1582 (5) | | |
| | | |
S2i—Ni—S2 | 180.0 | C2—C1—C3 | 120.41 (3) |
S2i—Ni—S1 | 87.723 (5) | C2—C1—S1 | 120.59 (3) |
S2—Ni—S1 | 92.277 (5) | C3—C1—S1 | 119.00 (3) |
S2i—Ni—S1i | 92.277 (5) | C5—C6—C7 | 119.03 (4) |
S2—Ni—S1i | 87.723 (5) | N1—C3—C1 | 177.73 (4) |
S1—Ni—S1i | 180.0 | N2—C4—C2 | 176.61 (5) |
C1—S1—Ni | 103.172 (13) | C8—C7—C6 | 120.02 (4) |
C2—S2—Ni | 103.165 (13) | C1—C2—C4 | 121.96 (3) |
C9—N3—C5 | 122.79 (4) | C1—C2—S2 | 120.54 (3) |
C9—C8—C7 | 119.07 (4) | C4—C2—S2 | 117.44 (3) |
N3—C9—C8 | 119.63 (4) | N3—C5—C6 | 119.44 (4) |
Symmetry code: (i) −x, −y+1, −z+1. |
Crystal data top
C13H6N5NiS4 | F(000) = 844 |
Mr = 419.18 | Dx = 1.775 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 16.1805 (10) Å | Cell parameters from 16292 reflections |
b = 6.3567 (5) Å | θ = 1.4–50.0° |
c = 17.0872 (7) Å | µ = 1.77 mm−1 |
β = 116.837 (5)° | T = 100 K |
V = 1568.20 (17) Å3 | Block, black |
Z = 4 | 0.45 × 0.20 × 0.20 mm |
Data collection top
CCD area detector diffractometer | 14166 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.000 |
Graphite monochromator | θmax = 50.0°, θmin = 1.4° |
Absorption correction: multi-scan sadabs | h = −34→30 |
Tmin = 0.503, Tmax = 0.718 | k = 0→13 |
16292 measured reflections | l = 0→36 |
16292 independent reflections | |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.029 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.081 | w = 1/[σ2(Fo2) + (0.0317P)2 + 0.3858P] where P = (Fo2 + 2Fc2)/3 |
S = 1.28 | (Δ/σ)max = 0.005 |
16292 reflections | Δρmax = 1.16 e Å−3 |
233 parameters | Δρmin = −0.47 e Å−3 |
0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0065 (4) |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and
goodness of fit S are based on F2, conventional R-factors R are based
on F, with F set to zero for negative F2. The threshold expression of
F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is
not relevant to the choice of reflections for refinement. R-factors based
on F2 are statistically about twice as large as those based on F, and R-
factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Ni1 | 0.633099 (5) | 0.513914 (13) | 0.503857 (5) | 0.00990 (2) | |
S1 | 0.718112 (11) | 0.79137 (3) | 0.544576 (10) | 0.01244 (3) | |
S2 | 0.712140 (12) | 0.35970 (3) | 0.627215 (10) | 0.01296 (3) | |
S3 | 0.547816 (12) | 0.67530 (3) | 0.383680 (11) | 0.01362 (3) | |
S4 | 0.551011 (11) | 0.23250 (3) | 0.462853 (10) | 0.01241 (2) | |
N1 | 0.92449 (6) | 1.01174 (12) | 0.72942 (5) | 0.02236 (12) | |
N2 | 0.90642 (5) | 0.45331 (12) | 0.84827 (4) | 0.01999 (11) | |
N3 | 0.33551 (5) | 0.59238 (12) | 0.17317 (4) | 0.01947 (10) | |
N4 | 0.33876 (5) | 0.03446 (11) | 0.26528 (4) | 0.01799 (10) | |
N5 | 0.79905 (4) | 0.42283 (10) | 0.41538 (4) | 0.01507 (8) | |
C1 | 0.79871 (4) | 0.73158 (10) | 0.64971 (4) | 0.01219 (8) | |
C2 | 0.79550 (4) | 0.54197 (10) | 0.68679 (4) | 0.01214 (8) | |
C3 | 0.86802 (5) | 0.88515 (11) | 0.69516 (4) | 0.01519 (9) | |
C4 | 0.85810 (5) | 0.49211 (11) | 0.77552 (4) | 0.01438 (9) | |
C5 | 0.46594 (4) | 0.49220 (10) | 0.32538 (4) | 0.01209 (8) | |
C6 | 0.46731 (4) | 0.29523 (10) | 0.36044 (4) | 0.01181 (8) | |
C7 | 0.39438 (5) | 0.54811 (11) | 0.24117 (4) | 0.01397 (8) | |
C8 | 0.39751 (5) | 0.14632 (10) | 0.31021 (4) | 0.01361 (8) | |
C9 | 0.83363 (5) | 0.61377 (12) | 0.41451 (4) | 0.01628 (10) | |
C10 | 0.90564 (5) | 0.69132 (12) | 0.48989 (5) | 0.01650 (10) | |
C11 | 0.94043 (5) | 0.56886 (12) | 0.56549 (4) | 0.01594 (9) | |
C12 | 0.90282 (5) | 0.37159 (12) | 0.56416 (5) | 0.01640 (10) | |
C13 | 0.83052 (5) | 0.30060 (11) | 0.48721 (5) | 0.01598 (9) | |
H5 | 0.7589 (14) | 0.377 (3) | 0.3702 (13) | 0.044 (5)* | |
H9 | 0.8064 (11) | 0.686 (3) | 0.3608 (10) | 0.022 (3)* | |
H10 | 0.9300 (11) | 0.822 (3) | 0.4884 (10) | 0.024 (4)* | |
H11 | 0.9889 (11) | 0.619 (3) | 0.6170 (10) | 0.022 (4)* | |
H12 | 0.9231 (11) | 0.289 (3) | 0.6118 (11) | 0.028 (4)* | |
H13 | 0.8000 (11) | 0.173 (3) | 0.4804 (10) | 0.026 (4)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Ni1 | 0.00930 (3) | 0.00994 (3) | 0.00919 (3) | −0.00020 (2) | 0.00306 (2) | 0.00023 (2) |
S1 | 0.01238 (5) | 0.01092 (5) | 0.01078 (5) | −0.00086 (4) | 0.00237 (4) | 0.00100 (4) |
S2 | 0.01365 (6) | 0.01206 (5) | 0.01092 (5) | −0.00128 (4) | 0.00355 (4) | 0.00170 (4) |
S3 | 0.01339 (6) | 0.01110 (5) | 0.01224 (5) | −0.00157 (4) | 0.00213 (4) | 0.00189 (4) |
S4 | 0.01259 (5) | 0.01033 (5) | 0.01108 (5) | −0.00061 (4) | 0.00250 (4) | 0.00100 (4) |
N1 | 0.0226 (3) | 0.0185 (2) | 0.0175 (2) | −0.0063 (2) | 0.0016 (2) | −0.00205 (19) |
N2 | 0.0224 (3) | 0.0204 (2) | 0.01152 (18) | 0.0050 (2) | 0.00265 (18) | 0.00101 (17) |
N3 | 0.0194 (2) | 0.0209 (3) | 0.01223 (18) | 0.0054 (2) | 0.00189 (17) | 0.00140 (17) |
N4 | 0.0193 (2) | 0.0153 (2) | 0.01413 (19) | −0.00428 (18) | 0.00287 (17) | −0.00127 (16) |
N5 | 0.01448 (19) | 0.0163 (2) | 0.01198 (17) | −0.00194 (16) | 0.00377 (15) | −0.00159 (15) |
C1 | 0.01210 (19) | 0.01172 (18) | 0.01064 (17) | −0.00004 (15) | 0.00327 (15) | −0.00042 (14) |
C2 | 0.01242 (19) | 0.01241 (19) | 0.01012 (17) | 0.00051 (15) | 0.00379 (15) | 0.00010 (14) |
C3 | 0.0153 (2) | 0.0135 (2) | 0.01250 (19) | −0.00137 (17) | 0.00243 (17) | −0.00094 (16) |
C4 | 0.0156 (2) | 0.0145 (2) | 0.01048 (18) | 0.00201 (17) | 0.00363 (16) | 0.00012 (15) |
C5 | 0.01187 (19) | 0.01124 (18) | 0.01108 (17) | 0.00041 (14) | 0.00334 (15) | 0.00051 (14) |
C6 | 0.01184 (19) | 0.01056 (18) | 0.01126 (17) | −0.00020 (14) | 0.00366 (15) | −0.00051 (14) |
C7 | 0.0144 (2) | 0.0131 (2) | 0.01178 (18) | 0.00169 (16) | 0.00358 (16) | 0.00031 (15) |
C8 | 0.0141 (2) | 0.01194 (19) | 0.01217 (18) | −0.00111 (16) | 0.00361 (16) | −0.00065 (15) |
C9 | 0.0166 (2) | 0.0173 (2) | 0.0124 (2) | −0.00179 (19) | 0.00424 (18) | 0.00167 (17) |
C10 | 0.0158 (2) | 0.0160 (2) | 0.0151 (2) | −0.00273 (18) | 0.00468 (18) | 0.00024 (18) |
C11 | 0.0137 (2) | 0.0184 (2) | 0.01256 (19) | −0.00119 (18) | 0.00316 (17) | −0.00043 (18) |
C12 | 0.0158 (2) | 0.0177 (2) | 0.0134 (2) | 0.00059 (19) | 0.00458 (18) | 0.00261 (18) |
C13 | 0.0162 (2) | 0.0143 (2) | 0.0158 (2) | −0.00127 (18) | 0.00586 (18) | 0.00041 (18) |
Geometric parameters (Å, º) top
Ni1—S2 | 2.1461 (2) | N5—C9 | 1.3394 (10) |
Ni1—S4 | 2.1482 (2) | N5—C13 | 1.3435 (9) |
Ni1—S3 | 2.1482 (2) | C1—C2 | 1.3736 (9) |
Ni1—S1 | 2.1501 (2) | C1—C3 | 1.4239 (9) |
S1—C1 | 1.7196 (6) | C2—C4 | 1.4278 (9) |
S2—C2 | 1.7199 (7) | C5—C6 | 1.3839 (9) |
S3—C5 | 1.7060 (6) | C5—C7 | 1.4259 (9) |
S4—C6 | 1.7076 (6) | C6—C8 | 1.4258 (9) |
N1—C3 | 1.1586 (10) | C9—C10 | 1.3801 (10) |
N2—C4 | 1.1576 (9) | C10—C11 | 1.3910 (10) |
N3—C7 | 1.1564 (9) | C11—C12 | 1.3895 (11) |
N4—C8 | 1.1575 (9) | C12—C13 | 1.3829 (10) |
| | | |
S2—Ni1—S4 | 86.934 (9) | C4—C2—S2 | 118.02 (5) |
S2—Ni1—S3 | 176.207 (8) | N1—C3—C1 | 177.62 (8) |
S4—Ni1—S3 | 92.874 (9) | N2—C4—C2 | 177.60 (8) |
S2—Ni1—S1 | 92.657 (9) | C6—C5—C7 | 120.62 (6) |
S4—Ni1—S1 | 178.517 (8) | C6—C5—S3 | 120.53 (5) |
S3—Ni1—S1 | 87.628 (9) | C7—C5—S3 | 118.82 (5) |
C1—S1—Ni1 | 103.26 (2) | C5—C6—C8 | 119.12 (6) |
C2—S2—Ni1 | 103.53 (2) | C5—C6—S4 | 120.34 (5) |
C5—S3—Ni1 | 103.11 (2) | C8—C6—S4 | 120.54 (5) |
C6—S4—Ni1 | 103.14 (2) | N3—C7—C5 | 179.12 (8) |
C9—N5—C13 | 123.11 (6) | N4—C8—C6 | 175.77 (7) |
C2—C1—C3 | 122.31 (6) | N5—C9—C10 | 119.61 (6) |
C2—C1—S1 | 120.47 (5) | C9—C10—C11 | 118.95 (7) |
C3—C1—S1 | 117.22 (5) | C12—C11—C10 | 119.94 (6) |
C1—C2—C4 | 121.88 (6) | C13—C12—C11 | 119.10 (6) |
C1—C2—S2 | 120.07 (5) | N5—C13—C12 | 119.27 (7) |
Crystal data top
C18H12CuN6S4 | Z = 1 |
Mr = 504.12 | F(000) = 255 |
Triclinic, P1 | Dx = 1.610 Mg m−3 |
a = 7.5458 (3) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 9.0111 (7) Å | Cell parameters from 15123 reflections |
c = 9.2574 (3) Å | θ = 2.5–60.0° |
α = 115.334 (4)° | µ = 1.47 mm−1 |
β = 95.223 (4)° | T = 100 K |
γ = 108.563 (4)° | Block, dark green |
V = 520.01 (5) Å3 | 0.40 × 0.30 × 0.24 mm |
Data collection top
CCD area detector diffractometer | 13925 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.000 |
Graphite monochromator | θmax = 60.0°, θmin = 2.5° |
Absorption correction: multi-scan sadabs | h = −18→18 |
Tmin = 0.591, Tmax = 0.719 | k = −21→19 |
15123 measured reflections | l = 0→22 |
15123 independent reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.022 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.068 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.14 | w = 1/[σ2(Fo2) + (0.0283P)2 + 0.0689P] where P = (Fo2 + 2Fc2)/3 |
15123 reflections | (Δ/σ)max = 0.002 |
157 parameters | Δρmax = 0.98 e Å−3 |
0 restraints | Δρmin = −0.44 e Å−3 |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and
goodness of fit S are based on F2, conventional R-factors R are based
on F, with F set to zero for negative F2. The threshold expression of
F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is
not relevant to the choice of reflections for refinement. R-factors based
on F2 are statistically about twice as large as those based on F, and R-
factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Cu1 | 0.5000 | 1.0000 | 0.5000 | 0.009600 (10) | |
S1 | 0.172576 (14) | 0.892888 (15) | 0.419114 (13) | 0.01361 (2) | |
S2 | 0.485502 (15) | 0.914568 (16) | 0.698811 (14) | 0.01464 (2) | |
N1 | −0.26008 (5) | 0.61894 (6) | 0.49164 (5) | 0.01815 (6) | |
N2 | 0.13349 (8) | 0.69076 (8) | 0.86499 (7) | 0.02447 (8) | |
N3 | 0.62647 (6) | 0.64016 (5) | 0.80570 (5) | 0.01629 (5) | |
C1 | 0.10528 (5) | 0.79684 (5) | 0.54262 (4) | 0.01159 (4) | |
C2 | 0.23749 (5) | 0.80869 (5) | 0.66343 (5) | 0.01212 (4) | |
C3 | −0.09672 (5) | 0.70110 (5) | 0.51590 (5) | 0.01350 (4) | |
C4 | 0.17607 (6) | 0.73972 (6) | 0.77115 (6) | 0.01590 (5) | |
C5 | 0.67251 (8) | 0.77338 (6) | 0.96161 (6) | 0.01912 (7) | |
C6 | 0.74637 (8) | 0.75487 (6) | 1.09197 (6) | 0.01948 (7) | |
C7 | 0.77132 (7) | 0.59832 (6) | 1.05847 (5) | 0.01630 (5) | |
C8 | 0.72136 (7) | 0.46287 (6) | 0.89608 (5) | 0.01623 (5) | |
C9 | 0.64875 (7) | 0.48710 (6) | 0.76925 (5) | 0.01690 (6) | |
H3 | 0.5803 (19) | 0.6538 (17) | 0.7229 (17) | 0.032 (3)* | |
H5 | 0.657 (2) | 0.8757 (19) | 0.9779 (18) | 0.042 (4)* | |
H6 | 0.785 (2) | 0.8507 (17) | 1.2045 (16) | 0.032 (3)* | |
H7 | 0.8229 (19) | 0.5892 (16) | 1.1457 (16) | 0.028 (3)* | |
H8 | 0.7358 (18) | 0.3498 (16) | 0.8643 (15) | 0.024 (3)* | |
H9 | 0.6146 (19) | 0.4108 (17) | 0.6622 (16) | 0.031 (3)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Cu1 | 0.00857 (2) | 0.00993 (2) | 0.01061 (2) | 0.003380 (10) | 0.002420 (10) | 0.005460 (10) |
S1 | 0.00953 (3) | 0.01944 (4) | 0.01442 (3) | 0.00481 (3) | 0.00290 (2) | 0.01107 (3) |
S2 | 0.00991 (3) | 0.02021 (4) | 0.01716 (4) | 0.00448 (3) | 0.00241 (3) | 0.01319 (3) |
N1 | 0.01084 (10) | 0.02172 (14) | 0.01978 (13) | 0.00237 (9) | 0.00298 (9) | 0.01137 (12) |
N2 | 0.02269 (17) | 0.0334 (2) | 0.0279 (2) | 0.00961 (16) | 0.00940 (15) | 0.02438 (19) |
N3 | 0.01910 (13) | 0.01829 (12) | 0.01241 (10) | 0.00812 (10) | 0.00219 (9) | 0.00812 (9) |
C1 | 0.00968 (9) | 0.01258 (10) | 0.01238 (10) | 0.00364 (8) | 0.00285 (7) | 0.00649 (8) |
C2 | 0.01088 (10) | 0.01341 (10) | 0.01361 (11) | 0.00430 (8) | 0.00322 (8) | 0.00822 (9) |
C3 | 0.01030 (10) | 0.01506 (11) | 0.01385 (11) | 0.00322 (8) | 0.00287 (8) | 0.00726 (9) |
C4 | 0.01420 (12) | 0.01936 (14) | 0.01848 (14) | 0.00587 (10) | 0.00511 (10) | 0.01325 (12) |
C5 | 0.02549 (19) | 0.01669 (14) | 0.01523 (13) | 0.01083 (13) | 0.00121 (12) | 0.00685 (11) |
C6 | 0.02663 (19) | 0.01639 (14) | 0.01236 (12) | 0.01003 (13) | −0.00034 (12) | 0.00437 (10) |
C7 | 0.01921 (14) | 0.01589 (12) | 0.01295 (11) | 0.00718 (11) | 0.00058 (10) | 0.00681 (10) |
C8 | 0.01911 (14) | 0.01465 (12) | 0.01448 (12) | 0.00749 (11) | 0.00287 (10) | 0.00641 (10) |
C9 | 0.02054 (15) | 0.01696 (13) | 0.01179 (11) | 0.00805 (12) | 0.00309 (10) | 0.00558 (10) |
Geometric parameters (Å, º) top
Cu1—S1 | 2.2634 (2) | N3—C5 | 1.3436 (6) |
Cu1—S1i | 2.2634 (2) | C1—C2 | 1.3727 (5) |
Cu1—S2i | 2.2776 (1) | C1—C3 | 1.4284 (5) |
Cu1—S2 | 2.2776 (1) | C2—C4 | 1.4236 (5) |
S1—C1 | 1.7283 (4) | C5—C6 | 1.3797 (6) |
S2—C2 | 1.7332 (4) | C6—C7 | 1.3882 (6) |
N1—C3 | 1.1594 (5) | C7—C8 | 1.3875 (6) |
N2—C4 | 1.1580 (6) | C8—C9 | 1.3801 (6) |
N3—C9 | 1.3432 (6) | | |
| | | |
S1—Cu1—S1i | 180.0 | C3—C1—S1 | 117.92 (3) |
S1—Cu1—S2i | 89.067 (5) | C1—C2—C4 | 121.06 (3) |
S1i—Cu1—S2i | 90.933 (5) | C1—C2—S2 | 122.46 (3) |
S1—Cu1—S2 | 90.933 (5) | C4—C2—S2 | 116.44 (3) |
S1i—Cu1—S2 | 89.067 (5) | N1—C3—C1 | 178.07 (5) |
S2i—Cu1—S2 | 180.000 (5) | N2—C4—C2 | 176.67 (6) |
C1—S1—Cu1 | 102.019 (13) | N3—C5—C6 | 119.49 (4) |
C2—S2—Cu1 | 101.667 (13) | C5—C6—C7 | 118.96 (4) |
C9—N3—C5 | 122.97 (4) | C8—C7—C6 | 120.12 (4) |
C2—C1—C3 | 119.38 (3) | C9—C8—C7 | 119.07 (4) |
C2—C1—S1 | 122.70 (3) | N3—C9—C8 | 119.38 (4) |
Symmetry code: (i) −x+1, −y+2, −z+1. |
Crystal data top
C13H6CuN5S4 | F(000) = 848 |
Mr = 424.01 | Dx = 1.801 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 17.418 (4) Å | Cell parameters from 16128 reflections |
b = 6.1838 (12) Å | θ = 2.3–49.9° |
c = 18.165 (4) Å | µ = 1.93 mm−1 |
β = 126.93 (3)° | T = 100 K |
V = 1563.9 (5) Å3 | Block, dark green |
Z = 4 | 0.22 × 0.15 × 0.13 mm |
Data collection top
CCD area detector diffractometer | 11366 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.000 |
Graphite monochromator | θmax = 49.9°, θmin = 2.3° |
Absorption correction: multi-scan sadabs | h = −37→0 |
Tmin = 0.676, Tmax = 0.787 | k = 0→13 |
16128 measured reflections | l = −30→38 |
16128 independent reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.036 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.075 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.08 | w = 1/[σ2(Fo2) + (0.0237P)2 + 0.6927P] where P = (Fo2 + 2Fc2)/3 |
16128 reflections | (Δ/σ)max = 0.001 |
233 parameters | Δρmax = 0.80 e Å−3 |
0 restraints | Δρmin = −0.71 e Å−3 |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and
goodness of fit S are based on F2, conventional R-factors R are based
on F, with F set to zero for negative F2. The threshold expression of
F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is
not relevant to the choice of reflections for refinement. R-factors based
on F2 are statistically about twice as large as those based on F, and R-
factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Cu1 | 0.118064 (7) | −0.004154 (16) | 0.128612 (7) | 0.00966 (2) | |
S1 | 0.208665 (15) | −0.29276 (3) | 0.173631 (15) | 0.01371 (3) | |
S2 | 0.198386 (15) | 0.16371 (3) | 0.088456 (15) | 0.01338 (3) | |
S3 | 0.045012 (16) | −0.15923 (4) | 0.178841 (16) | 0.01538 (4) | |
S4 | 0.024707 (15) | 0.28010 (3) | 0.079175 (16) | 0.01485 (4) | |
N1 | 0.41943 (6) | −0.50598 (14) | 0.19766 (7) | 0.02093 (14) | |
N2 | 0.38480 (6) | 0.04115 (14) | 0.05365 (6) | 0.01953 (13) | |
N3 | −0.17236 (6) | −0.09488 (14) | 0.16853 (6) | 0.01910 (13) | |
N4 | −0.19023 (6) | 0.47762 (13) | 0.06015 (6) | 0.01685 (12) | |
N5 | 0.68599 (5) | 0.57025 (13) | 0.11604 (5) | 0.01450 (11) | |
C1 | 0.28768 (5) | −0.22363 (13) | 0.14921 (5) | 0.01195 (11) | |
C2 | 0.28083 (5) | −0.03160 (13) | 0.10902 (5) | 0.01178 (11) | |
C3 | 0.36005 (6) | −0.37910 (14) | 0.17397 (6) | 0.01456 (12) | |
C4 | 0.33950 (6) | 0.01229 (14) | 0.07999 (6) | 0.01406 (11) | |
C5 | −0.04536 (5) | 0.02406 (12) | 0.14676 (5) | 0.01148 (10) | |
C6 | −0.05266 (5) | 0.21545 (12) | 0.10590 (5) | 0.01121 (10) | |
C7 | −0.11486 (6) | −0.03962 (13) | 0.16009 (6) | 0.01301 (11) | |
C8 | −0.12773 (6) | 0.36355 (13) | 0.08049 (6) | 0.01295 (11) | |
C9 | 0.64876 (6) | 0.37474 (15) | 0.08093 (6) | 0.01608 (13) | |
C10 | 0.57815 (6) | 0.29382 (15) | 0.08576 (6) | 0.01640 (13) | |
C11 | 0.54715 (6) | 0.41706 (15) | 0.12715 (6) | 0.01564 (13) | |
C12 | 0.58763 (6) | 0.61922 (15) | 0.16332 (6) | 0.01553 (12) | |
C13 | 0.65862 (6) | 0.69333 (14) | 0.15763 (6) | 0.01510 (12) | |
H5 | 0.7277 (12) | 0.620 (3) | 0.1101 (11) | 0.028 (4)* | |
H9 | 0.6711 (11) | 0.304 (3) | 0.0531 (10) | 0.022 (4)* | |
H10 | 0.5527 (12) | 0.160 (3) | 0.0621 (11) | 0.028 (4)* | |
H11 | 0.5042 (12) | 0.366 (3) | 0.1328 (11) | 0.030 (4)* | |
H12 | 0.5678 (11) | 0.702 (3) | 0.1893 (11) | 0.026 (4)* | |
H13 | 0.6889 (11) | 0.825 (3) | 0.1793 (10) | 0.020 (4)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Cu1 | 0.00967 (3) | 0.00956 (3) | 0.01148 (3) | 0.00046 (3) | 0.00728 (3) | 0.00073 (3) |
S1 | 0.01342 (7) | 0.01151 (7) | 0.02069 (8) | 0.00218 (6) | 0.01264 (7) | 0.00381 (6) |
S2 | 0.01453 (7) | 0.01112 (7) | 0.01895 (8) | 0.00095 (6) | 0.01243 (7) | 0.00252 (6) |
S3 | 0.01781 (8) | 0.01319 (8) | 0.02272 (9) | 0.00501 (6) | 0.01621 (8) | 0.00694 (7) |
S4 | 0.01638 (8) | 0.01206 (8) | 0.02299 (9) | 0.00359 (6) | 0.01549 (7) | 0.00563 (7) |
N1 | 0.0203 (3) | 0.0181 (3) | 0.0306 (4) | 0.0047 (3) | 0.0186 (3) | 0.0030 (3) |
N2 | 0.0220 (3) | 0.0203 (3) | 0.0257 (3) | −0.0052 (3) | 0.0193 (3) | −0.0042 (3) |
N3 | 0.0197 (3) | 0.0188 (3) | 0.0259 (4) | −0.0061 (3) | 0.0174 (3) | −0.0044 (3) |
N4 | 0.0173 (3) | 0.0158 (3) | 0.0222 (3) | 0.0036 (2) | 0.0144 (3) | 0.0019 (2) |
N5 | 0.0142 (2) | 0.0156 (3) | 0.0175 (3) | −0.0019 (2) | 0.0116 (2) | −0.0009 (2) |
C1 | 0.0119 (2) | 0.0115 (3) | 0.0148 (3) | −0.0003 (2) | 0.0093 (2) | −0.0006 (2) |
C2 | 0.0119 (2) | 0.0119 (3) | 0.0143 (3) | −0.0013 (2) | 0.0093 (2) | −0.0011 (2) |
C3 | 0.0144 (3) | 0.0134 (3) | 0.0195 (3) | 0.0008 (2) | 0.0122 (3) | 0.0001 (2) |
C4 | 0.0151 (3) | 0.0140 (3) | 0.0168 (3) | −0.0028 (2) | 0.0116 (2) | −0.0022 (2) |
C5 | 0.0123 (2) | 0.0110 (3) | 0.0141 (3) | 0.0000 (2) | 0.0096 (2) | 0.0002 (2) |
C6 | 0.0115 (2) | 0.0106 (3) | 0.0136 (3) | 0.0006 (2) | 0.0087 (2) | 0.0004 (2) |
C7 | 0.0142 (3) | 0.0119 (3) | 0.0165 (3) | −0.0017 (2) | 0.0112 (2) | −0.0016 (2) |
C8 | 0.0141 (3) | 0.0118 (3) | 0.0157 (3) | 0.0004 (2) | 0.0105 (2) | 0.0001 (2) |
C9 | 0.0172 (3) | 0.0165 (3) | 0.0186 (3) | −0.0015 (3) | 0.0129 (3) | −0.0033 (3) |
C10 | 0.0164 (3) | 0.0145 (3) | 0.0194 (3) | −0.0035 (2) | 0.0113 (3) | −0.0030 (3) |
C11 | 0.0134 (3) | 0.0182 (3) | 0.0177 (3) | −0.0024 (2) | 0.0106 (3) | −0.0005 (3) |
C12 | 0.0155 (3) | 0.0173 (3) | 0.0177 (3) | −0.0006 (2) | 0.0120 (3) | −0.0022 (3) |
C13 | 0.0149 (3) | 0.0135 (3) | 0.0189 (3) | −0.0017 (2) | 0.0112 (3) | −0.0022 (2) |
Geometric parameters (Å, º) top
Cu1—S3 | 2.1832 (4) | N5—C9 | 1.3386 (12) |
Cu1—S4 | 2.1876 (5) | N5—C13 | 1.3455 (11) |
Cu1—S1 | 2.1894 (5) | C1—C2 | 1.3611 (11) |
Cu1—S2 | 2.1894 (4) | C1—C3 | 1.4263 (11) |
S1—C1 | 1.7342 (8) | C2—C4 | 1.4295 (11) |
S2—C2 | 1.7366 (8) | C5—C6 | 1.3617 (11) |
S3—C5 | 1.7320 (8) | C5—C7 | 1.4253 (10) |
S4—C6 | 1.7314 (8) | C6—C8 | 1.4269 (11) |
N1—C3 | 1.1556 (12) | C9—C10 | 1.3785 (12) |
N2—C4 | 1.1564 (11) | C10—C11 | 1.3876 (13) |
N3—C7 | 1.1525 (11) | C11—C12 | 1.3910 (13) |
N4—C8 | 1.1559 (11) | C12—C13 | 1.3795 (12) |
| | | |
S3—Cu1—S4 | 92.771 (16) | C4—C2—S2 | 118.08 (6) |
S3—Cu1—S1 | 87.487 (16) | N1—C3—C1 | 177.05 (9) |
S4—Cu1—S1 | 178.180 (11) | N2—C4—C2 | 177.09 (9) |
S3—Cu1—S2 | 175.623 (10) | C6—C5—C7 | 121.47 (7) |
S4—Cu1—S2 | 87.047 (16) | C6—C5—S3 | 121.37 (6) |
S1—Cu1—S2 | 92.833 (16) | C7—C5—S3 | 117.07 (6) |
C1—S1—Cu1 | 102.02 (3) | C5—C6—C8 | 120.10 (7) |
C2—S2—Cu1 | 102.12 (3) | C5—C6—S4 | 121.33 (6) |
C5—S3—Cu1 | 102.24 (3) | C8—C6—S4 | 118.52 (6) |
C6—S4—Cu1 | 102.19 (3) | N3—C7—C5 | 177.95 (9) |
C9—N5—C13 | 123.01 (7) | N4—C8—C6 | 177.58 (9) |
C2—C1—C3 | 122.22 (7) | N5—C9—C10 | 119.53 (8) |
C2—C1—S1 | 121.67 (6) | C9—C10—C11 | 119.18 (8) |
C3—C1—S1 | 116.11 (6) | C10—C11—C12 | 119.85 (8) |
C1—C2—C4 | 120.79 (7) | C13—C12—C11 | 119.07 (8) |
C1—C2—S2 | 121.11 (6) | N5—C13—C12 | 119.35 (8) |
Crystal data top
C18H12N6NiS4 | Z = 1 |
Mr = 499.29 | F(000) = 254 |
Triclinic, P1 | Dx = 1.632 Mg m−3 |
a = 7.4307 (2) Å | Cell parameters from 131084 reflections |
b = 8.9072 (2) Å | θ = 1.5–33.3° |
c = 9.2445 (2) Å | µ = 0.31 mm−1 |
α = 115.167 (1)° | T = 15 K |
β = 94.727 (1)° | Block, red |
γ = 108.525 (1)° | 0.12 × 0.09 × 0.06 mm |
V = 507.94 (2) Å3 | |
Data collection top
APEX II CCD detector diffractometer | Rint = 0.044 |
Radiation source: Synchrotron | θmax = 33.3°, θmin = 1.5° |
DCM monochromator | h = −19→18 |
130961 measured reflections | k = −23→23 |
16291 independent reflections | l = −14→23 |
14895 reflections with I > 2σ(I) | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.019 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.058 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0296P)2 + 0.0397P] where P = (Fo2 + 2Fc2)/3 |
16291 reflections | (Δ/σ)max = 0.014 |
157 parameters | Δρmax = 0.98 e Å−3 |
0 restraints | Δρmin = −1.83 e Å−3 |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and
goodness of fit S are based on F2, conventional R-factors R are based
on F, with F set to zero for negative F2. The threshold expression of
F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is
not relevant to the choice of reflections for refinement. R-factors based
on F2 are statistically about twice as large as those based on F, and R-
factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Ni | 0.0000 | 0.5000 | 1.5000 | 0.004130 (10) | |
S1 | 0.317618 (9) | 0.603163 (9) | 1.579636 (9) | 0.005930 (10) | |
S2 | 0.012018 (9) | 0.581040 (9) | 1.308949 (9) | 0.006160 (10) | |
C1 | 0.39474 (3) | 0.70368 (3) | 1.45924 (3) | 0.00597 (3) | |
C2 | 0.26156 (3) | 0.69072 (3) | 1.33830 (3) | 0.00608 (3) | |
N2 | 0.36226 (4) | 0.80414 (4) | 1.13119 (4) | 0.01179 (4) | |
C4 | 0.32093 (4) | 0.75749 (4) | 1.22776 (4) | 0.00769 (3) | |
C3 | 0.59890 (3) | 0.80103 (3) | 1.48805 (3) | 0.00709 (3) | |
N1 | 0.76412 (3) | 0.88561 (4) | 1.51355 (4) | 0.01002 (3) | |
N3 | 0.87136 (3) | 0.86159 (3) | 1.19702 (3) | 0.00776 (3) | |
C9 | 0.85642 (4) | 1.01879 (3) | 1.22929 (4) | 0.00804 (3) | |
C8 | 0.78291 (4) | 1.04088 (3) | 1.10109 (4) | 0.00795 (3) | |
C7 | 0.72426 (4) | 0.89928 (3) | 0.94116 (4) | 0.00820 (3) | |
C6 | 0.74185 (4) | 0.73830 (4) | 0.91130 (4) | 0.00921 (3) | |
C5 | 0.81664 (4) | 0.72187 (4) | 1.04315 (4) | 0.00888 (3) | |
H5 | 0.8355 (16) | 0.6178 (14) | 1.0364 (14) | 0.028 (3)* | |
H7 | 0.6677 (13) | 0.9102 (12) | 0.8533 (12) | 0.0156 (19)* | |
H9 | 0.9024 (14) | 1.1078 (12) | 1.3380 (12) | 0.017 (2)* | |
H6 | 0.6975 (14) | 0.6343 (12) | 0.8005 (12) | 0.021 (2)* | |
H8 | 0.7733 (14) | 1.1521 (12) | 1.1242 (12) | 0.021 (2)* | |
H3 | 0.9178 (14) | 0.8491 (12) | 1.2818 (13) | 0.020 (2)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Ni | 0.003240 (10) | 0.004800 (10) | 0.00433 (2) | 0.001230 (10) | 0.000740 (10) | 0.002430 (10) |
S1 | 0.00413 (2) | 0.00804 (2) | 0.00641 (2) | 0.001820 (10) | 0.001010 (10) | 0.00458 (2) |
S2 | 0.00423 (2) | 0.00834 (2) | 0.00659 (2) | 0.001820 (10) | 0.000870 (10) | 0.00469 (2) |
C1 | 0.00462 (5) | 0.00688 (5) | 0.00655 (8) | 0.00169 (4) | 0.00117 (4) | 0.00376 (5) |
C2 | 0.00514 (5) | 0.00719 (6) | 0.00652 (8) | 0.00199 (4) | 0.00134 (4) | 0.00410 (6) |
N2 | 0.01239 (8) | 0.01559 (9) | 0.01276 (11) | 0.00559 (7) | 0.00527 (6) | 0.01093 (8) |
C4 | 0.00723 (6) | 0.00930 (6) | 0.00842 (9) | 0.00301 (5) | 0.00245 (5) | 0.00593 (7) |
C3 | 0.00494 (5) | 0.00825 (6) | 0.00776 (9) | 0.00160 (5) | 0.00135 (5) | 0.00428 (6) |
N1 | 0.00528 (5) | 0.01214 (7) | 0.01194 (9) | 0.00120 (5) | 0.00150 (5) | 0.00686 (7) |
N3 | 0.00932 (6) | 0.00833 (5) | 0.00602 (7) | 0.00381 (5) | 0.00080 (5) | 0.00371 (5) |
C9 | 0.00967 (7) | 0.00741 (6) | 0.00595 (9) | 0.00363 (5) | 0.00072 (5) | 0.00227 (6) |
C8 | 0.00995 (7) | 0.00691 (6) | 0.00690 (9) | 0.00385 (5) | 0.00107 (5) | 0.00301 (6) |
C7 | 0.01037 (7) | 0.00779 (6) | 0.00617 (8) | 0.00385 (5) | 0.00045 (6) | 0.00319 (6) |
C6 | 0.01240 (8) | 0.00759 (6) | 0.00606 (9) | 0.00445 (6) | 0.00013 (6) | 0.00191 (6) |
C5 | 0.01152 (8) | 0.00738 (6) | 0.00766 (9) | 0.00456 (6) | 0.00073 (6) | 0.00322 (6) |
Geometric parameters (Å, º) top
Ni—S1i | 2.1718 | N2—C4 | 1.1592 (4) |
Ni—S1 | 2.1718 | C3—N1 | 1.1592 (3) |
Ni—S2 | 2.1720 | N3—C9 | 1.3457 (3) |
Ni—S2i | 2.1721 | N3—C5 | 1.3472 (4) |
S1—C1 | 1.7308 (2) | C9—C8 | 1.3789 (4) |
S2—C2 | 1.7340 (2) | C8—C7 | 1.3875 (4) |
C1—C2 | 1.3704 (3) | C7—C6 | 1.3921 (4) |
C1—C3 | 1.4232 (3) | C6—C5 | 1.3811 (4) |
C2—C4 | 1.4202 (4) | | |
| | | |
S1i—Ni—S1 | 179.999 (4) | C1—C2—C4 | 121.96 (2) |
S1i—Ni—S2 | 87.677 (3) | C1—C2—S2 | 120.477 (18) |
S1—Ni—S2 | 92.324 (3) | C4—C2—S2 | 117.490 (17) |
S1i—Ni—S2i | 92.324 (3) | N2—C4—C2 | 176.58 (3) |
S1—Ni—S2i | 87.676 (3) | N1—C3—C1 | 177.70 (3) |
S2—Ni—S2i | 180.0 | C9—N3—C5 | 122.83 (2) |
C1—S1—Ni | 103.123 (8) | N3—C9—C8 | 119.57 (3) |
C2—S2—Ni | 103.152 (8) | C9—C8—C7 | 119.06 (2) |
C2—C1—C3 | 120.31 (2) | C8—C7—C6 | 120.14 (2) |
C2—C1—S1 | 120.661 (17) | C5—C6—C7 | 118.96 (3) |
C3—C1—S1 | 119.032 (17) | N3—C5—C6 | 119.43 (2) |
Symmetry code: (i) −x, −y+1, −z+3. |
Crystal data top
C13H6N5NiS4 | F(000) = 844 |
Mr = 419.18 | Dx = 1.793 Mg m−3 |
Monoclinic, P21/c | Cell parameters from 277512 reflections |
a = 16.0654 (5) Å | θ = 1.4–42.2° |
b = 6.3464 (2) Å | µ = 0.40 mm−1 |
c = 17.0333 (5) Å | T = 15 K |
β = 116.606 (1)° | Block, black |
V = 1552.77 (8) Å3 | 0.21 × 0.19 × 0.09 mm |
Z = 4 | |
Data collection top
APEX II CCD detector diffractometer | Rint = 0.053 |
Radiation source: Synchrotron | θmax = 42.2°, θmin = 1.4° |
DCM monochromator | h = −48→50 |
276927 measured reflections | k = −19→19 |
49058 independent reflections | l = −50→31 |
42535 reflections with I > 2σ(I) | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.023 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.062 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0288P)2 + 0.0769P] where P = (Fo2 + 2Fc2)/3 |
49058 reflections | (Δ/σ)max = 0.015 |
232 parameters | Δρmax = 1.16 e Å−3 |
0 restraints | Δρmin = −2.76 e Å−3 |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and
goodness of fit S are based on F2, conventional R-factors R are based
on F, with F set to zero for negative F2. The threshold expression of
F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is
not relevant to the choice of reflections for refinement. R-factors based
on F2 are statistically about twice as large as those based on F, and R-
factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Ni1 | 0.633534 (1) | 0.513951 (3) | 0.503987 (1) | 0.003500 | |
S1 | 0.718564 (3) | 0.792403 (8) | 0.544859 (3) | 0.004960 (10) | |
S2 | 0.712721 (3) | 0.359276 (8) | 0.627322 (3) | 0.005090 (10) | |
S3 | 0.547916 (3) | 0.675608 (8) | 0.383834 (4) | 0.005300 (10) | |
S4 | 0.551424 (3) | 0.231606 (8) | 0.463015 (3) | 0.004960 (10) | |
N1 | 0.925259 (15) | 1.01380 (3) | 0.729738 (15) | 0.00997 (2) | |
N2 | 0.907187 (14) | 0.45322 (3) | 0.848649 (13) | 0.00931 (2) | |
N3 | 0.335054 (14) | 0.59094 (3) | 0.173195 (13) | 0.00918 (2) | |
N4 | 0.338677 (13) | 0.03297 (3) | 0.265198 (13) | 0.00865 (2) | |
N5 | 0.799300 (11) | 0.42247 (3) | 0.414799 (11) | 0.00674 (2) | |
C1 | 0.799372 (12) | 0.73248 (3) | 0.649993 (12) | 0.00545 (2) | |
C2 | 0.796234 (12) | 0.54209 (3) | 0.687055 (12) | 0.00547 (2) | |
C3 | 0.868884 (13) | 0.88636 (3) | 0.695574 (13) | 0.00677 (2) | |
C4 | 0.858835 (13) | 0.49211 (3) | 0.775762 (13) | 0.00657 (2) | |
C5 | 0.465910 (12) | 0.49175 (3) | 0.325513 (12) | 0.00546 (2) | |
C6 | 0.467465 (12) | 0.29433 (3) | 0.360625 (12) | 0.00537 (2) | |
C7 | 0.394167 (13) | 0.54723 (3) | 0.241303 (13) | 0.00644 (2) | |
C8 | 0.397552 (13) | 0.14498 (3) | 0.310349 (13) | 0.00635 (2) | |
C9 | 0.833795 (14) | 0.61461 (3) | 0.414109 (14) | 0.00737 (2) | |
C10 | 0.905744 (14) | 0.69261 (3) | 0.489726 (14) | 0.00736 (2) | |
C11 | 0.940612 (14) | 0.56947 (3) | 0.565358 (14) | 0.00723 (2) | |
C12 | 0.903043 (14) | 0.37080 (3) | 0.563884 (14) | 0.00740 (2) | |
C13 | 0.830829 (14) | 0.29974 (3) | 0.486645 (14) | 0.00728 (2) | |
H5 | 0.7527 (8) | 0.3743 (18) | 0.3677 (7) | 0.042 (3)* | |
H9 | 0.8058 (6) | 0.6874 (13) | 0.3606 (5) | 0.0152 (18)* | |
H10 | 0.9320 (6) | 0.8242 (14) | 0.4883 (5) | 0.0159 (18)* | |
H11 | 0.9899 (6) | 0.6206 (14) | 0.6198 (5) | 0.0158 (18)* | |
H12 | 0.9253 (6) | 0.2835 (14) | 0.6145 (5) | 0.0152 (18)* | |
H13 | 0.8002 (6) | 0.1708 (15) | 0.4788 (6) | 0.021 (2)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Ni1 | 0.003060 | 0.003550 | 0.003190 (10) | −0.000190 | 0.000770 | 0.000030 |
S1 | 0.004620 (10) | 0.004440 (10) | 0.004340 (10) | −0.000540 (10) | 0.000690 (10) | 0.000440 (10) |
S2 | 0.004950 (10) | 0.004680 (10) | 0.004340 (10) | −0.000730 (10) | 0.000930 (10) | 0.000540 (10) |
S3 | 0.004890 (10) | 0.004450 (10) | 0.004750 (10) | −0.000760 (10) | 0.000540 (10) | 0.000600 (10) |
S4 | 0.004670 (10) | 0.004250 (10) | 0.004370 (10) | −0.000450 (10) | 0.000620 (10) | 0.000430 (10) |
N1 | 0.00922 (5) | 0.00870 (5) | 0.00902 (5) | −0.00378 (4) | 0.00143 (4) | −0.00174 (4) |
N2 | 0.00963 (5) | 0.01031 (5) | 0.00505 (4) | 0.00198 (4) | 0.00067 (3) | 0.00092 (4) |
N3 | 0.00812 (4) | 0.01050 (5) | 0.00566 (4) | 0.00231 (4) | 0.00017 (3) | 0.00117 (4) |
N4 | 0.00789 (4) | 0.00780 (4) | 0.00748 (5) | −0.00275 (3) | 0.00098 (3) | −0.00142 (4) |
N5 | 0.00632 (3) | 0.00698 (4) | 0.00541 (4) | −0.00103 (3) | 0.00129 (3) | −0.00037 (3) |
C1 | 0.00514 (4) | 0.00509 (4) | 0.00479 (4) | −0.00068 (3) | 0.00103 (3) | −0.00003 (3) |
C2 | 0.00531 (4) | 0.00542 (4) | 0.00445 (4) | −0.00031 (3) | 0.00109 (3) | 0.00026 (3) |
C3 | 0.00622 (4) | 0.00612 (4) | 0.00611 (5) | −0.00147 (3) | 0.00111 (3) | −0.00064 (3) |
C4 | 0.00641 (4) | 0.00703 (4) | 0.00464 (4) | 0.00051 (3) | 0.00101 (3) | 0.00036 (3) |
C5 | 0.00497 (4) | 0.00511 (4) | 0.00477 (4) | −0.00025 (3) | 0.00080 (3) | 0.00036 (3) |
C6 | 0.00495 (3) | 0.00485 (4) | 0.00489 (4) | −0.00054 (3) | 0.00095 (3) | 0.00001 (3) |
C7 | 0.00581 (4) | 0.00660 (4) | 0.00495 (4) | 0.00063 (3) | 0.00067 (3) | 0.00052 (3) |
C8 | 0.00581 (4) | 0.00584 (4) | 0.00582 (4) | −0.00123 (3) | 0.00119 (3) | −0.00070 (3) |
C9 | 0.00731 (4) | 0.00741 (5) | 0.00588 (5) | −0.00086 (4) | 0.00161 (4) | 0.00088 (4) |
C10 | 0.00720 (4) | 0.00672 (4) | 0.00677 (5) | −0.00133 (3) | 0.00189 (4) | 0.00026 (4) |
C11 | 0.00650 (4) | 0.00779 (5) | 0.00578 (5) | −0.00098 (3) | 0.00130 (4) | −0.00015 (4) |
C12 | 0.00725 (4) | 0.00752 (5) | 0.00608 (5) | −0.00023 (4) | 0.00178 (4) | 0.00112 (4) |
C13 | 0.00736 (4) | 0.00633 (4) | 0.00701 (5) | −0.00105 (3) | 0.00221 (4) | 0.00036 (4) |
Geometric parameters (Å, º) top
Ni1—S2 | 2.1451 | N5—C9 | 1.3416 (3) |
Ni1—S3 | 2.1475 | N5—C13 | 1.3438 (3) |
Ni1—S4 | 2.1479 | C1—C2 | 1.3746 (3) |
Ni1—S1 | 2.1498 | C1—C3 | 1.4237 (2) |
S1—C1 | 1.7189 (2) | C2—C4 | 1.4262 (3) |
S2—C2 | 1.7201 (2) | C5—C6 | 1.3837 (3) |
S3—C5 | 1.7064 (2) | C5—C7 | 1.4245 (3) |
S4—C6 | 1.7066 (2) | C6—C8 | 1.4254 (2) |
N1—C3 | 1.1580 (3) | C9—C10 | 1.3808 (3) |
N2—C4 | 1.1584 (3) | C10—C11 | 1.3920 (3) |
N3—C7 | 1.1567 (3) | C11—C12 | 1.3932 (3) |
N4—C8 | 1.1575 (2) | C12—C13 | 1.3831 (3) |
| | | |
S2—Ni1—S3 | 176.170 (2) | C4—C2—S2 | 118.021 (14) |
S2—Ni1—S4 | 86.848 (3) | N1—C3—C1 | 177.50 (2) |
S3—Ni1—S4 | 92.916 (3) | N2—C4—C2 | 177.56 (2) |
S2—Ni1—S1 | 92.687 (3) | C6—C5—C7 | 120.591 (16) |
S3—Ni1—S1 | 87.639 (3) | C6—C5—S3 | 120.514 (14) |
S4—Ni1—S1 | 178.569 (2) | C7—C5—S3 | 118.865 (14) |
C1—S1—Ni1 | 103.263 (6) | C5—C6—C8 | 119.051 (16) |
C2—S2—Ni1 | 103.533 (7) | C5—C6—S4 | 120.393 (13) |
C5—S3—Ni1 | 103.068 (7) | C8—C6—S4 | 120.554 (14) |
C6—S4—Ni1 | 103.107 (7) | N3—C7—C5 | 179.09 (2) |
C9—N5—C13 | 123.100 (17) | N4—C8—C6 | 175.63 (2) |
C2—C1—C3 | 122.250 (17) | N5—C9—C10 | 119.615 (19) |
C2—C1—S1 | 120.465 (13) | C9—C10—C11 | 118.934 (19) |
C3—C1—S1 | 117.283 (14) | C10—C11—C12 | 119.991 (18) |
C1—C2—C4 | 121.908 (17) | C13—C12—C11 | 118.964 (19) |
C1—C2—S2 | 120.038 (14) | N5—C13—C12 | 119.391 (18) |