Derivatives of 4-methyl-1,6-diphenylpyrimidine-2(1
H)-selenone show very strong antimicrobial activity. In order to extend the current knowledge about the features responsible for the biological activity, crystal structure analyses are presented for 4-methyl-1-(2-methylphenyl)-6-phenylpyrimidine-2(1
H)-selenone (
1), 4-methyl-1-(3-methylphenyl)-6-phenylpyrimidine-2(1
H)-selenone (
2), 4-methyl-1-(4-methylphenyl)-6-phenylpyrimidine-2(1
H)-selenone (
3) (all C
18H
16N
2Se) and 1-(4-chlorophenyl)-4-methyl-6-phenylpyrimidine-2(1
H)-selenone (
4) (C
17H
13ClN
2Se). Furthermore, the antibacterial and antifungal activities of these compounds were evaluated. All the presented derivatives crystallize in the space group
P2
1/
c with one molecule in the asymmetric unit. The molecular geometries differ slightly in the mutual orientation of the rings. The packing of molecules in the crystals is dominated by C—H
N and C—H
Se intermolecular interactions. Additionally, in the crystal structure of
4, C—H
Cl intermolecular interactions are observed. The introduction of a methyl or chlorine substituent improves the biological activity, while its position significantly affects biological activity only in case of the chlorine substituent.
Supporting information
CCDC references: 2110986; 2110985; 2110984; 2110983
Data collection: CrysAlis PRO (Rigaku OD, 2015) for (1); COLLECT (Bruker, 2004) for (2), (3), (4). Cell refinement: CrysAlis PRO (Rigaku OD, 2015) for (1); SCALEPACK (Otwinowski & Minor, 1997) for (2), (3), (4). Data reduction: CrysAlis PRO (Rigaku OD, 2015) for (1); DENZO and SCALEPACK (Otwinowski & Minor, 1997) for (2), (3), (4). Program(s) used to solve structure: SIR2014 (Burla et al., 2015) for (1); SHELXS97 (Sheldrick, 2008) for (2), (3), (4). For all structures, program(s) used to refine structure: SHELXL2018 (Sheldrick, 2015); molecular graphics: Mercury (Macrae et al., 2020); software used to prepare material for publication: publCIF (Westrip, 2010).
4-Methyl-1-(2-methylphenyl)-6-phenylpyrimidine-2(1
H)-selenone (1)
top
Crystal data top
C18H16N2Se | F(000) = 688 |
Mr = 339.29 | Dx = 1.476 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 7450 reflections |
a = 13.6910 (4) Å | θ = 3.6–28.0° |
b = 11.2468 (2) Å | µ = 2.45 mm−1 |
c = 10.3665 (2) Å | T = 130 K |
β = 106.980 (3)° | Plate, orange |
V = 1526.65 (6) Å3 | 0.38 × 0.31 × 0.06 mm |
Z = 4 | |
Data collection top
SuperNova, Dual, Cu at zero, Atlas diffractometer | 3683 independent reflections |
Radiation source: micro-focus sealed X-ray tube, SuperNova (Mo) X-ray Source | 2987 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.047 |
Detector resolution: 10.3756 pixels mm-1 | θmax = 28.6°, θmin = 3.1° |
ω scans | h = −18→18 |
Absorption correction: gaussian (CrysAlis PRO; Rigaku OD, 2015) | k = −14→15 |
Tmin = 0.447, Tmax = 0.862 | l = −13→13 |
20043 measured reflections | |
Refinement top
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.034 | H-atom parameters constrained |
wR(F2) = 0.085 | w = 1/[σ2(Fo2) + (0.0329P)2 + 1.6011P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max = 0.001 |
3683 reflections | Δρmax = 0.68 e Å−3 |
192 parameters | Δρmin = −0.72 e Å−3 |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
C2 | 0.38994 (18) | −0.0723 (2) | 0.5277 (2) | 0.0191 (5) | |
N3 | 0.45736 (15) | −0.16292 (17) | 0.55102 (19) | 0.0198 (4) | |
C4 | 0.46161 (18) | −0.2338 (2) | 0.4502 (2) | 0.0206 (5) | |
C5 | 0.39539 (18) | −0.2198 (2) | 0.3194 (2) | 0.0224 (5) | |
H5 | 0.400062 | −0.271229 | 0.248753 | 0.027* | |
C6 | 0.32443 (17) | −0.1316 (2) | 0.2951 (2) | 0.0183 (4) | |
N1 | 0.32166 (15) | −0.05678 (16) | 0.39949 (18) | 0.0180 (4) | |
C19 | 0.5409 (2) | −0.3290 (2) | 0.4797 (2) | 0.0264 (5) | |
H19A | 0.604303 | −0.297583 | 0.467191 | 0.04* | |
H19B | 0.516919 | −0.396065 | 0.418226 | 0.04* | |
H19C | 0.553661 | −0.355979 | 0.573062 | 0.04* | |
C13 | 0.25143 (18) | −0.1142 (2) | 0.1590 (2) | 0.0199 (5) | |
C18 | 0.2911 (2) | −0.0874 (2) | 0.0531 (2) | 0.0259 (5) | |
H18 | 0.362654 | −0.077337 | 0.069956 | 0.031* | |
C17 | 0.2264 (2) | −0.0754 (3) | −0.0768 (3) | 0.0334 (6) | |
H17 | 0.253484 | −0.056773 | −0.148987 | 0.04* | |
C16 | 0.1227 (2) | −0.0905 (3) | −0.1012 (3) | 0.0331 (6) | |
H16 | 0.07834 | −0.081206 | −0.190078 | 0.04* | |
C15 | 0.0829 (2) | −0.1190 (2) | 0.0033 (3) | 0.0313 (6) | |
H15 | 0.011498 | −0.130856 | −0.014633 | 0.038* | |
C14 | 0.14664 (19) | −0.1305 (2) | 0.1334 (3) | 0.0257 (5) | |
H14 | 0.119101 | −0.149345 | 0.205066 | 0.031* | |
C7 | 0.25398 (18) | 0.0458 (2) | 0.3714 (2) | 0.0198 (5) | |
C12 | 0.28024 (19) | 0.1391 (2) | 0.3008 (2) | 0.0243 (5) | |
H12 | 0.340745 | 0.135389 | 0.273778 | 0.029* | |
C11 | 0.2172 (2) | 0.2383 (2) | 0.2701 (3) | 0.0309 (6) | |
H11 | 0.233456 | 0.302357 | 0.22037 | 0.037* | |
C10 | 0.1306 (2) | 0.2428 (2) | 0.3127 (3) | 0.0332 (6) | |
H10 | 0.087923 | 0.311099 | 0.293701 | 0.04* | |
C9 | 0.1055 (2) | 0.1487 (2) | 0.3826 (3) | 0.0305 (6) | |
H9 | 0.045705 | 0.153785 | 0.41114 | 0.037* | |
C8 | 0.16565 (19) | 0.0465 (2) | 0.4125 (2) | 0.0235 (5) | |
C20 | 0.1356 (2) | −0.0561 (2) | 0.4856 (3) | 0.0327 (6) | |
H20A | 0.180812 | −0.123753 | 0.486266 | 0.049* | |
H20B | 0.064835 | −0.078895 | 0.439771 | 0.049* | |
H20C | 0.141407 | −0.032575 | 0.578628 | 0.049* | |
Se1 | 0.39029 (2) | 0.03034 (2) | 0.66592 (2) | 0.02545 (9) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
C2 | 0.0240 (11) | 0.0212 (11) | 0.0141 (10) | −0.0042 (9) | 0.0088 (9) | 0.0000 (9) |
N3 | 0.0248 (10) | 0.0216 (10) | 0.0141 (9) | −0.0003 (8) | 0.0073 (8) | 0.0019 (7) |
C4 | 0.0251 (12) | 0.0196 (11) | 0.0181 (11) | −0.0003 (9) | 0.0078 (9) | 0.0021 (9) |
C5 | 0.0286 (12) | 0.0227 (12) | 0.0161 (11) | 0.0021 (10) | 0.0072 (9) | −0.0033 (9) |
C6 | 0.0211 (11) | 0.0209 (11) | 0.0145 (10) | −0.0034 (9) | 0.0076 (9) | −0.0009 (8) |
N1 | 0.0229 (10) | 0.0180 (9) | 0.0148 (9) | −0.0006 (8) | 0.0082 (8) | −0.0008 (7) |
C19 | 0.0316 (13) | 0.0249 (12) | 0.0213 (12) | 0.0034 (10) | 0.0057 (10) | −0.0001 (10) |
C13 | 0.0271 (12) | 0.0158 (10) | 0.0155 (11) | 0.0011 (9) | 0.0040 (9) | −0.0025 (8) |
C18 | 0.0268 (12) | 0.0307 (13) | 0.0204 (12) | 0.0016 (11) | 0.0073 (10) | −0.0010 (10) |
C17 | 0.0435 (16) | 0.0372 (15) | 0.0185 (12) | 0.0047 (13) | 0.0072 (11) | 0.0031 (11) |
C16 | 0.0373 (15) | 0.0343 (15) | 0.0205 (13) | 0.0068 (12) | −0.0029 (11) | 0.0009 (11) |
C15 | 0.0254 (13) | 0.0302 (14) | 0.0324 (14) | 0.0022 (11) | −0.0010 (11) | −0.0062 (11) |
C14 | 0.0257 (12) | 0.0280 (13) | 0.0241 (12) | −0.0009 (10) | 0.0085 (10) | −0.0039 (10) |
C7 | 0.0227 (11) | 0.0206 (11) | 0.0152 (11) | −0.0003 (9) | 0.0040 (9) | −0.0031 (8) |
C12 | 0.0264 (12) | 0.0251 (12) | 0.0206 (12) | −0.0028 (10) | 0.0056 (10) | −0.0014 (9) |
C11 | 0.0330 (14) | 0.0245 (13) | 0.0318 (14) | −0.0023 (11) | 0.0040 (11) | 0.0049 (11) |
C10 | 0.0295 (14) | 0.0259 (13) | 0.0402 (16) | 0.0046 (11) | 0.0041 (12) | −0.0005 (11) |
C9 | 0.0254 (13) | 0.0326 (14) | 0.0336 (14) | 0.0041 (11) | 0.0087 (11) | −0.0056 (11) |
C8 | 0.0251 (12) | 0.0259 (12) | 0.0207 (12) | −0.0029 (10) | 0.0088 (10) | −0.0050 (9) |
C20 | 0.0332 (14) | 0.0349 (14) | 0.0368 (15) | −0.0034 (12) | 0.0207 (12) | 0.0010 (12) |
Se1 | 0.03882 (16) | 0.02391 (14) | 0.01487 (13) | −0.00015 (11) | 0.00981 (10) | −0.00236 (9) |
Geometric parameters (Å, º) top
C2—N3 | 1.349 (3) | C18—C17 | 1.386 (3) |
C2—N1 | 1.395 (3) | C17—C16 | 1.378 (4) |
C2—Se1 | 1.839 (2) | C16—C15 | 1.385 (4) |
N3—C4 | 1.329 (3) | C15—C14 | 1.382 (4) |
C4—C5 | 1.403 (3) | C7—C12 | 1.385 (3) |
C4—C19 | 1.492 (3) | C7—C8 | 1.395 (3) |
C5—C6 | 1.360 (3) | C12—C11 | 1.389 (4) |
C6—N1 | 1.380 (3) | C11—C10 | 1.382 (4) |
C6—C13 | 1.485 (3) | C10—C9 | 1.381 (4) |
N1—C7 | 1.455 (3) | C9—C8 | 1.395 (4) |
C13—C18 | 1.393 (3) | C8—C20 | 1.503 (4) |
C13—C14 | 1.393 (3) | | |
| | | |
N3—C2—N1 | 119.9 (2) | C14—C13—C6 | 122.2 (2) |
N3—C2—Se1 | 119.28 (16) | C17—C18—C13 | 120.1 (2) |
N1—C2—Se1 | 120.83 (17) | C16—C17—C18 | 119.9 (3) |
C4—N3—C2 | 119.8 (2) | C17—C16—C15 | 120.3 (2) |
N3—C4—C5 | 121.9 (2) | C14—C15—C16 | 120.3 (2) |
N3—C4—C19 | 117.8 (2) | C15—C14—C13 | 119.7 (2) |
C5—C4—C19 | 120.3 (2) | C12—C7—C8 | 122.6 (2) |
C6—C5—C4 | 119.1 (2) | C12—C7—N1 | 117.3 (2) |
C5—C6—N1 | 118.8 (2) | C8—C7—N1 | 120.1 (2) |
C5—C6—C13 | 121.2 (2) | C7—C12—C11 | 119.3 (2) |
N1—C6—C13 | 120.0 (2) | C10—C11—C12 | 119.4 (2) |
C6—N1—C2 | 120.44 (19) | C9—C10—C11 | 120.5 (3) |
C6—N1—C7 | 119.22 (19) | C10—C9—C8 | 121.8 (3) |
C2—N1—C7 | 120.03 (18) | C7—C8—C9 | 116.4 (2) |
C18—C13—C14 | 119.7 (2) | C7—C8—C20 | 122.7 (2) |
C18—C13—C6 | 117.9 (2) | C9—C8—C20 | 120.9 (2) |
| | | |
N1—C2—N3—C4 | 3.1 (3) | C13—C18—C17—C16 | −0.3 (4) |
Se1—C2—N3—C4 | −176.32 (17) | C18—C17—C16—C15 | −0.8 (4) |
C2—N3—C4—C5 | −2.0 (3) | C17—C16—C15—C14 | 1.2 (4) |
C2—N3—C4—C19 | 177.1 (2) | C16—C15—C14—C13 | −0.6 (4) |
N3—C4—C5—C6 | −0.3 (4) | C18—C13—C14—C15 | −0.5 (4) |
C19—C4—C5—C6 | −179.4 (2) | C6—C13—C14—C15 | −176.6 (2) |
C4—C5—C6—N1 | 1.6 (3) | C6—N1—C7—C12 | −71.5 (3) |
C4—C5—C6—C13 | −179.0 (2) | C2—N1—C7—C12 | 102.3 (2) |
C5—C6—N1—C2 | −0.6 (3) | C6—N1—C7—C8 | 107.2 (3) |
C13—C6—N1—C2 | −179.9 (2) | C2—N1—C7—C8 | −79.1 (3) |
C5—C6—N1—C7 | 173.1 (2) | C8—C7—C12—C11 | 0.5 (4) |
C13—C6—N1—C7 | −6.2 (3) | N1—C7—C12—C11 | 179.1 (2) |
N3—C2—N1—C6 | −1.8 (3) | C7—C12—C11—C10 | 1.2 (4) |
Se1—C2—N1—C6 | 177.59 (16) | C12—C11—C10—C9 | −1.4 (4) |
N3—C2—N1—C7 | −175.5 (2) | C11—C10—C9—C8 | −0.2 (4) |
Se1—C2—N1—C7 | 3.9 (3) | C12—C7—C8—C9 | −2.0 (3) |
C5—C6—C13—C18 | −61.4 (3) | N1—C7—C8—C9 | 179.4 (2) |
N1—C6—C13—C18 | 117.9 (2) | C12—C7—C8—C20 | 178.3 (2) |
C5—C6—C13—C14 | 114.8 (3) | N1—C7—C8—C20 | −0.3 (3) |
N1—C6—C13—C14 | −65.8 (3) | C10—C9—C8—C7 | 1.8 (4) |
C14—C13—C18—C17 | 0.9 (4) | C10—C9—C8—C20 | −178.5 (3) |
C6—C13—C18—C17 | 177.2 (2) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5···N3i | 0.95 | 2.51 | 3.403 (3) | 156 |
C5—H5···Se1i | 0.95 | 3.03 | 3.830 (2) | 143 |
C19—H19B···Se1i | 0.98 | 3.08 | 4.005 (3) | 158 |
C19—H19C···Se1ii | 0.98 | 2.89 | 3.855 (2) | 170 |
Symmetry codes: (i) x, −y−1/2, z−1/2; (ii) −x+1, y−1/2, −z+3/2. |
4-Methyl-1-(3-methylphenyl)-6-phenylpyrimidine-2(1
H)-selenone (2)
top
Crystal data top
C18H16N2Se | F(000) = 688 |
Mr = 339.29 | Dx = 1.454 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 5719 reflections |
a = 8.4770 (7) Å | θ = 1.0–27.5° |
b = 19.6180 (15) Å | µ = 2.42 mm−1 |
c = 9.8030 (9) Å | T = 100 K |
β = 108.025 (5)° | Block, red |
V = 1550.2 (2) Å3 | 0.39 × 0.12 × 0.09 mm |
Z = 4 | |
Data collection top
KappaCCD diffractometer | 3479 independent reflections |
Horizonally mounted graphite crystal monochromator | 2550 reflections with I > 2σ(I) |
Detector resolution: 9 pixels mm-1 | Rint = 0.119 |
CCD scans | θmax = 27.4°, θmin = 2.4° |
Absorption correction: multi-scan (DENZO-SMN; Otwinowski & Minor, 1997) | h = −10→10 |
Tmin = 0.760, Tmax = 1 | k = −24→25 |
10897 measured reflections | l = −12→12 |
Refinement top
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.069 | H-atom parameters constrained |
wR(F2) = 0.127 | w = 1/[σ2(Fo2) + (0.031P)2 + 4.9629P] where P = (Fo2 + 2Fc2)/3 |
S = 1.08 | (Δ/σ)max < 0.001 |
3479 reflections | Δρmax = 1.39 e Å−3 |
192 parameters | Δρmin = −0.83 e Å−3 |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
C2 | 0.4682 (5) | −0.0418 (2) | 0.3230 (5) | 0.0196 (10) | |
N1 | 0.4774 (4) | 0.01976 (18) | 0.2559 (4) | 0.0167 (8) | |
C6 | 0.6255 (5) | 0.0417 (2) | 0.2389 (4) | 0.0174 (9) | |
C5 | 0.7609 (5) | 0.0008 (2) | 0.2858 (4) | 0.0186 (9) | |
H5 | 0.862711 | 0.014474 | 0.277746 | 0.022* | |
C4 | 0.7443 (5) | −0.0628 (2) | 0.3468 (4) | 0.0205 (9) | |
N3 | 0.6025 (5) | −0.08355 (18) | 0.3626 (4) | 0.0196 (8) | |
C19 | 0.8902 (6) | −0.1095 (3) | 0.3983 (6) | 0.0335 (12) | |
H19A | 0.853671 | −0.153359 | 0.419657 | 0.05* | |
H19B | 0.96786 | −0.090829 | 0.483341 | 0.05* | |
H19C | 0.942885 | −0.114136 | 0.325079 | 0.05* | |
C13 | 0.6284 (5) | 0.1088 (2) | 0.1697 (5) | 0.0183 (9) | |
C18 | 0.5588 (6) | 0.1169 (3) | 0.0227 (5) | 0.0236 (10) | |
H18 | 0.510931 | 0.079898 | −0.034525 | 0.028* | |
C17 | 0.5609 (6) | 0.1805 (3) | −0.0385 (5) | 0.0268 (11) | |
H170 | 0.516632 | 0.18592 | −0.13728 | 0.032* | |
C16 | 0.6284 (6) | 0.2356 (2) | 0.0467 (5) | 0.0246 (11) | |
H160 | 0.625099 | 0.278559 | 0.005577 | 0.03* | |
C15 | 0.7009 (5) | 0.2276 (2) | 0.1926 (5) | 0.0222 (10) | |
H150 | 0.748339 | 0.264773 | 0.249303 | 0.027* | |
C14 | 0.7027 (5) | 0.1639 (2) | 0.2544 (5) | 0.0204 (10) | |
H14 | 0.75363 | 0.158021 | 0.352303 | 0.025* | |
C7 | 0.3326 (6) | 0.0637 (3) | 0.2074 (5) | 0.0244 (10) | |
C12 | 0.2131 (6) | 0.0496 (3) | 0.0762 (5) | 0.0298 (12) | |
H12 | 0.223664 | 0.012013 | 0.021893 | 0.036* | |
C11 | 0.0789 (6) | 0.0929 (3) | 0.0292 (6) | 0.0382 (14) | |
H11 | −0.002731 | 0.084434 | −0.057523 | 0.046* | |
C10 | 0.0658 (7) | 0.1480 (3) | 0.1096 (6) | 0.0371 (13) | |
H10 | −0.025477 | 0.176652 | 0.076085 | 0.045* | |
C9 | 0.1837 (6) | 0.1629 (3) | 0.2392 (6) | 0.0317 (12) | |
C8 | 0.3199 (6) | 0.1186 (2) | 0.2895 (5) | 0.0251 (11) | |
H8 | 0.400099 | 0.12647 | 0.377242 | 0.03* | |
C20 | 0.1713 (8) | 0.2248 (3) | 0.3260 (7) | 0.0442 (15) | |
H20A | 0.188313 | 0.2651 | 0.276822 | 0.066* | |
H20B | 0.254342 | 0.222363 | 0.418227 | 0.066* | |
H20C | 0.063305 | 0.226386 | 0.338266 | 0.066* | |
Se1 | 0.27704 (6) | −0.06709 (2) | 0.36013 (5) | 0.02394 (16) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
C2 | 0.023 (2) | 0.016 (2) | 0.024 (2) | −0.0063 (19) | 0.0135 (19) | −0.0013 (18) |
N1 | 0.0135 (17) | 0.0158 (18) | 0.0234 (19) | −0.0001 (15) | 0.0094 (15) | 0.0026 (15) |
C6 | 0.020 (2) | 0.018 (2) | 0.017 (2) | −0.0060 (19) | 0.0109 (18) | −0.0050 (18) |
C5 | 0.017 (2) | 0.021 (2) | 0.020 (2) | −0.0035 (19) | 0.0095 (18) | −0.0023 (19) |
C4 | 0.020 (2) | 0.021 (2) | 0.021 (2) | 0.000 (2) | 0.0080 (19) | −0.005 (2) |
N3 | 0.0202 (19) | 0.0157 (19) | 0.027 (2) | 0.0011 (16) | 0.0125 (16) | 0.0021 (15) |
C19 | 0.022 (3) | 0.031 (3) | 0.051 (3) | 0.009 (2) | 0.016 (2) | 0.010 (3) |
C13 | 0.017 (2) | 0.018 (2) | 0.026 (2) | −0.0002 (19) | 0.0153 (19) | 0.0014 (19) |
C18 | 0.025 (2) | 0.024 (2) | 0.025 (3) | −0.005 (2) | 0.012 (2) | 0.000 (2) |
C17 | 0.025 (2) | 0.029 (3) | 0.028 (3) | 0.001 (2) | 0.011 (2) | 0.008 (2) |
C16 | 0.023 (2) | 0.020 (2) | 0.036 (3) | 0.006 (2) | 0.018 (2) | 0.010 (2) |
C15 | 0.021 (2) | 0.017 (2) | 0.033 (3) | −0.0018 (19) | 0.014 (2) | −0.005 (2) |
C14 | 0.019 (2) | 0.020 (2) | 0.026 (2) | −0.0006 (19) | 0.0122 (19) | −0.0014 (19) |
C7 | 0.022 (2) | 0.025 (2) | 0.032 (3) | 0.002 (2) | 0.017 (2) | 0.009 (2) |
C12 | 0.020 (2) | 0.038 (3) | 0.036 (3) | −0.002 (2) | 0.015 (2) | 0.005 (2) |
C11 | 0.025 (3) | 0.055 (4) | 0.037 (3) | 0.003 (3) | 0.013 (2) | 0.014 (3) |
C10 | 0.025 (3) | 0.039 (3) | 0.048 (3) | 0.003 (3) | 0.013 (3) | 0.020 (3) |
C9 | 0.029 (3) | 0.024 (3) | 0.053 (3) | 0.001 (2) | 0.029 (3) | 0.006 (2) |
C8 | 0.028 (3) | 0.016 (2) | 0.038 (3) | 0.002 (2) | 0.020 (2) | 0.007 (2) |
C20 | 0.047 (4) | 0.026 (3) | 0.065 (4) | 0.006 (3) | 0.025 (3) | 0.000 (3) |
Se1 | 0.0216 (2) | 0.0205 (2) | 0.0352 (3) | −0.0031 (2) | 0.01672 (19) | 0.0045 (2) |
Geometric parameters (Å, º) top
C2—N3 | 1.358 (6) | C16—C15 | 1.380 (7) |
C2—N1 | 1.389 (6) | C16—H160 | 0.93 |
C2—Se1 | 1.835 (4) | C15—C14 | 1.387 (6) |
N1—C6 | 1.386 (5) | C15—H150 | 0.93 |
N1—C7 | 1.453 (6) | C14—H14 | 0.93 |
C6—C5 | 1.359 (6) | C7—C8 | 1.369 (7) |
C6—C13 | 1.483 (6) | C7—C12 | 1.397 (7) |
C5—C4 | 1.409 (6) | C12—C11 | 1.379 (7) |
C5—H5 | 0.93 | C12—H12 | 0.93 |
C4—N3 | 1.322 (5) | C11—C10 | 1.363 (9) |
C4—C19 | 1.496 (6) | C11—H11 | 0.93 |
C19—H19A | 0.96 | C10—C9 | 1.383 (8) |
C19—H19B | 0.96 | C10—H10 | 0.93 |
C19—H19C | 0.96 | C9—C8 | 1.407 (7) |
C13—C18 | 1.388 (6) | C9—C20 | 1.504 (7) |
C13—C14 | 1.389 (6) | C8—H8 | 0.93 |
C18—C17 | 1.387 (7) | C20—H20A | 0.96 |
C18—H18 | 0.93 | C20—H20B | 0.96 |
C17—C16 | 1.379 (7) | C20—H20C | 0.96 |
C17—H170 | 0.93 | | |
| | | |
N3—C2—N1 | 119.6 (3) | C17—C16—H160 | 119.8 |
N3—C2—Se1 | 119.6 (3) | C15—C16—H160 | 119.8 |
N1—C2—Se1 | 120.8 (3) | C16—C15—C14 | 119.8 (4) |
C6—N1—C2 | 120.9 (4) | C16—C15—H150 | 120.1 |
C6—N1—C7 | 118.8 (3) | C14—C15—H150 | 120.1 |
C2—N1—C7 | 120.3 (3) | C15—C14—C13 | 119.9 (4) |
C5—C6—N1 | 118.5 (4) | C15—C14—H14 | 120 |
C5—C6—C13 | 123.2 (4) | C13—C14—H14 | 120 |
N1—C6—C13 | 118.3 (4) | C8—C7—C12 | 122.0 (5) |
C6—C5—C4 | 118.8 (4) | C8—C7—N1 | 119.1 (4) |
C6—C5—H5 | 120.6 | C12—C7—N1 | 118.9 (4) |
C4—C5—H5 | 120.6 | C11—C12—C7 | 118.3 (5) |
N3—C4—C5 | 122.4 (4) | C11—C12—H12 | 120.8 |
N3—C4—C19 | 117.3 (4) | C7—C12—H12 | 120.8 |
C5—C4—C19 | 120.3 (4) | C10—C11—C12 | 120.1 (5) |
C4—N3—C2 | 119.5 (4) | C10—C11—H11 | 119.9 |
C4—C19—H19A | 109.5 | C12—C11—H11 | 119.9 |
C4—C19—H19B | 109.5 | C11—C10—C9 | 122.3 (5) |
H19A—C19—H19B | 109.5 | C11—C10—H10 | 118.9 |
C4—C19—H19C | 109.5 | C9—C10—H10 | 118.9 |
H19A—C19—H19C | 109.5 | C10—C9—C8 | 118.2 (5) |
H19B—C19—H19C | 109.5 | C10—C9—C20 | 122.2 (5) |
C18—C13—C14 | 120.0 (4) | C8—C9—C20 | 119.6 (5) |
C18—C13—C6 | 121.0 (4) | C7—C8—C9 | 119.1 (5) |
C14—C13—C6 | 119.1 (4) | C7—C8—H8 | 120.4 |
C17—C18—C13 | 119.6 (5) | C9—C8—H8 | 120.4 |
C17—C18—H18 | 120.2 | C9—C20—H20A | 109.5 |
C13—C18—H18 | 120.2 | C9—C20—H20B | 109.5 |
C16—C17—C18 | 120.2 (4) | H20A—C20—H20B | 109.5 |
C16—C17—H170 | 119.9 | C9—C20—H20C | 109.5 |
C18—C17—H170 | 119.9 | H20A—C20—H20C | 109.5 |
C17—C16—C15 | 120.4 (4) | H20B—C20—H20C | 109.5 |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C19—H19C···Se1i | 0.96 | 2.90 | 3.513 (5) | 123 |
C8—H8···N3ii | 0.93 | 2.70 | 3.339 (6) | 127 |
Symmetry codes: (i) x+1, y, z; (ii) −x+1, −y, −z+1. |
4-Methyl-1-(4-methylphenyl)-6-phenylpyrimidine-2(1
H)-selenone (3)
top
Crystal data top
C18H16N2Se | F(000) = 688 |
Mr = 339.29 | Dx = 1.439 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 6950 reflections |
a = 12.2520 (3) Å | θ = 1.0–27.5° |
b = 12.2930 (3) Å | µ = 2.39 mm−1 |
c = 10.4050 (3) Å | T = 100 K |
β = 92.516 (2)° | Red, plate |
V = 1565.63 (7) Å3 | 0.44 × 0.3 × 0.06 mm |
Z = 4 | |
Data collection top
KappaCCD diffractometer | 3592 independent reflections |
Horizonally mounted graphite crystal monochromator | 3079 reflections with I > 2σ(I) |
Detector resolution: 9 pixels mm-1 | Rint = 0.039 |
CCD scans | θmax = 27.5°, θmin = 3.0° |
Absorption correction: multi-scan (DENZO-SMN; Otwinowski & Minor, 1997) | h = −15→15 |
Tmin = 0.787, Tmax = 1 | k = −15→15 |
12443 measured reflections | l = −13→13 |
Refinement top
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.027 | w = 1/[σ2(Fo2) + (0.0347P)2 + 0.7949P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.07 | (Δ/σ)max = 0.003 |
S = 1.04 | Δρmax = 0.41 e Å−3 |
3592 reflections | Δρmin = −0.48 e Å−3 |
193 parameters | Extinction correction: SHELXL2018 (Sheldrick, 2015), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
0 restraints | Extinction coefficient: 0.0070 (7) |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
C2 | 0.37304 (14) | 0.07969 (14) | 1.02643 (17) | 0.0154 (3) | |
N3 | 0.43470 (12) | 0.16988 (12) | 1.04800 (14) | 0.0155 (3) | |
C4 | 0.44321 (14) | 0.24380 (14) | 0.95640 (17) | 0.0165 (3) | |
C5 | 0.38807 (14) | 0.23402 (14) | 0.83590 (17) | 0.0176 (4) | |
H5 | 0.392985 | 0.288498 | 0.77441 | 0.021* | |
C6 | 0.32701 (14) | 0.14286 (14) | 0.81069 (17) | 0.0160 (3) | |
N1 | 0.32041 (12) | 0.06545 (12) | 0.90634 (14) | 0.0146 (3) | |
C19 | 0.51761 (15) | 0.33849 (15) | 0.98494 (19) | 0.0222 (4) | |
H19A | 0.514997 | 0.357354 | 1.074285 | 0.033* | |
H19B | 0.494429 | 0.399556 | 0.933119 | 0.033* | |
H19C | 0.59103 | 0.319142 | 0.96569 | 0.033* | |
C13 | 0.26777 (14) | 0.12843 (15) | 0.68435 (17) | 0.0172 (3) | |
C18 | 0.20152 (15) | 0.21321 (16) | 0.63847 (18) | 0.0206 (4) | |
H18 | 0.195429 | 0.276287 | 0.686979 | 0.025* | |
C17 | 0.14431 (17) | 0.20401 (18) | 0.5203 (2) | 0.0268 (4) | |
H17 | 0.098996 | 0.260245 | 0.490831 | 0.032* | |
C16 | 0.15494 (18) | 0.11117 (18) | 0.4467 (2) | 0.0289 (4) | |
H16 | 0.115301 | 0.104095 | 0.368847 | 0.035* | |
C15 | 0.22485 (19) | 0.02865 (17) | 0.4892 (2) | 0.0285 (4) | |
H15 | 0.234411 | −0.032346 | 0.438038 | 0.034* | |
C14 | 0.28035 (17) | 0.03678 (16) | 0.60742 (19) | 0.0232 (4) | |
H14 | 0.326375 | −0.019238 | 0.635812 | 0.028* | |
C7 | 0.25721 (15) | −0.03316 (14) | 0.88041 (17) | 0.0160 (3) | |
C12 | 0.14452 (15) | −0.02969 (14) | 0.87833 (18) | 0.0185 (4) | |
H12 | 0.108541 | 0.033373 | 0.901897 | 0.022* | |
C11 | 0.08537 (15) | −0.12205 (16) | 0.84040 (19) | 0.0218 (4) | |
H11 | 0.009454 | −0.120327 | 0.839359 | 0.026* | |
C10 | 0.13817 (16) | −0.21688 (16) | 0.80404 (19) | 0.0221 (4) | |
C9 | 0.25194 (16) | −0.21816 (15) | 0.8099 (2) | 0.0226 (4) | |
H9 | 0.288354 | −0.281275 | 0.787425 | 0.027* | |
C8 | 0.31225 (15) | −0.12730 (15) | 0.84854 (18) | 0.0198 (4) | |
H8 | 0.388191 | −0.129553 | 0.852969 | 0.024* | |
C20 | 0.07524 (18) | −0.31604 (17) | 0.7572 (2) | 0.0316 (5) | |
H20A | 0.117829 | −0.355669 | 0.697648 | 0.047* | |
H20B | 0.007666 | −0.293628 | 0.715043 | 0.047* | |
H20C | 0.060255 | −0.361791 | 0.829061 | 0.047* | |
Se1 | 0.35942 (2) | −0.01894 (2) | 1.15715 (2) | 0.02159 (8) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
C2 | 0.0164 (8) | 0.0142 (8) | 0.0159 (8) | 0.0012 (6) | 0.0022 (6) | −0.0023 (6) |
N3 | 0.0171 (7) | 0.0136 (7) | 0.0158 (7) | −0.0003 (5) | 0.0015 (6) | −0.0019 (6) |
C4 | 0.0164 (8) | 0.0144 (8) | 0.0187 (9) | 0.0008 (6) | 0.0027 (7) | −0.0014 (7) |
C5 | 0.0209 (9) | 0.0157 (8) | 0.0165 (8) | −0.0012 (7) | 0.0019 (7) | 0.0025 (7) |
C6 | 0.0168 (8) | 0.0160 (8) | 0.0153 (8) | 0.0021 (6) | 0.0030 (6) | 0.0006 (7) |
N1 | 0.0176 (7) | 0.0119 (7) | 0.0142 (7) | 0.0003 (5) | 0.0005 (6) | 0.0000 (5) |
C19 | 0.0244 (10) | 0.0179 (9) | 0.0241 (10) | −0.0058 (7) | −0.0015 (7) | 0.0013 (7) |
C13 | 0.0178 (8) | 0.0194 (9) | 0.0145 (8) | −0.0012 (7) | 0.0011 (6) | 0.0006 (7) |
C18 | 0.0243 (9) | 0.0199 (9) | 0.0176 (9) | 0.0003 (7) | 0.0001 (7) | 0.0013 (7) |
C17 | 0.0262 (10) | 0.0311 (11) | 0.0227 (10) | 0.0017 (8) | −0.0054 (8) | 0.0069 (8) |
C16 | 0.0322 (11) | 0.0373 (12) | 0.0166 (9) | −0.0076 (9) | −0.0062 (8) | 0.0025 (8) |
C15 | 0.0401 (12) | 0.0275 (11) | 0.0176 (10) | −0.0034 (9) | −0.0002 (8) | −0.0044 (8) |
C14 | 0.0291 (10) | 0.0220 (10) | 0.0184 (9) | 0.0028 (7) | 0.0004 (8) | −0.0012 (7) |
C7 | 0.0198 (9) | 0.0129 (8) | 0.0151 (8) | −0.0030 (6) | −0.0013 (7) | 0.0006 (6) |
C12 | 0.0207 (9) | 0.0150 (9) | 0.0198 (9) | 0.0014 (7) | 0.0020 (7) | 0.0012 (7) |
C11 | 0.0166 (9) | 0.0216 (9) | 0.0270 (10) | −0.0017 (7) | −0.0015 (7) | 0.0001 (8) |
C10 | 0.0250 (10) | 0.0181 (9) | 0.0229 (9) | −0.0025 (7) | −0.0033 (7) | −0.0005 (7) |
C9 | 0.0250 (10) | 0.0150 (9) | 0.0276 (10) | 0.0035 (7) | −0.0020 (8) | −0.0039 (7) |
C8 | 0.0185 (9) | 0.0183 (9) | 0.0224 (9) | 0.0015 (7) | −0.0022 (7) | −0.0022 (7) |
C20 | 0.0282 (11) | 0.0202 (10) | 0.0456 (14) | −0.0044 (8) | −0.0072 (9) | −0.0076 (9) |
Se1 | 0.03395 (13) | 0.01578 (11) | 0.01504 (11) | −0.00326 (8) | 0.00095 (7) | 0.00317 (7) |
Geometric parameters (Å, º) top
C2—N3 | 1.355 (2) | C16—C15 | 1.388 (3) |
C2—N1 | 1.392 (2) | C16—H16 | 0.93 |
C2—Se1 | 1.8351 (18) | C15—C14 | 1.383 (3) |
N3—C4 | 1.324 (2) | C15—H15 | 0.93 |
C4—C5 | 1.403 (3) | C14—H14 | 0.93 |
C4—C19 | 1.500 (2) | C7—C12 | 1.381 (3) |
C5—C6 | 1.366 (2) | C7—C8 | 1.387 (2) |
C5—H5 | 0.93 | C12—C11 | 1.395 (3) |
C6—N1 | 1.382 (2) | C12—H12 | 0.93 |
C6—C13 | 1.484 (2) | C11—C10 | 1.394 (3) |
N1—C7 | 1.457 (2) | C11—H11 | 0.93 |
C19—H19A | 0.96 | C10—C9 | 1.393 (3) |
C19—H19B | 0.96 | C10—C20 | 1.512 (3) |
C19—H19C | 0.96 | C9—C8 | 1.389 (3) |
C13—C18 | 1.392 (3) | C9—H9 | 0.93 |
C13—C14 | 1.394 (3) | C8—H8 | 0.93 |
C18—C17 | 1.393 (3) | C20—H20A | 0.96 |
C18—H18 | 0.93 | C20—H20B | 0.96 |
C17—C16 | 1.384 (3) | C20—H20C | 0.96 |
C17—H17 | 0.93 | | |
| | | |
N3—C2—N1 | 118.99 (15) | C17—C16—H16 | 120.1 |
N3—C2—Se1 | 119.08 (13) | C15—C16—H16 | 120.1 |
N1—C2—Se1 | 121.92 (12) | C14—C15—C16 | 120.22 (19) |
C4—N3—C2 | 120.22 (16) | C14—C15—H15 | 119.9 |
N3—C4—C5 | 122.30 (16) | C16—C15—H15 | 119.9 |
N3—C4—C19 | 117.15 (16) | C15—C14—C13 | 120.44 (19) |
C5—C4—C19 | 120.53 (16) | C15—C14—H14 | 119.8 |
C6—C5—C4 | 118.68 (17) | C13—C14—H14 | 119.8 |
C6—C5—H5 | 120.7 | C12—C7—C8 | 121.23 (16) |
C4—C5—H5 | 120.7 | C12—C7—N1 | 120.00 (15) |
C5—C6—N1 | 118.38 (16) | C8—C7—N1 | 118.58 (16) |
C5—C6—C13 | 120.69 (16) | C7—C12—C11 | 119.09 (17) |
N1—C6—C13 | 120.92 (15) | C7—C12—H12 | 120.5 |
C6—N1—C2 | 121.37 (15) | C11—C12—H12 | 120.5 |
C6—N1—C7 | 119.14 (15) | C10—C11—C12 | 121.08 (17) |
C2—N1—C7 | 119.50 (14) | C10—C11—H11 | 119.5 |
C4—C19—H19A | 109.5 | C12—C11—H11 | 119.5 |
C4—C19—H19B | 109.5 | C9—C10—C11 | 118.24 (17) |
H19A—C19—H19B | 109.5 | C9—C10—C20 | 120.03 (18) |
C4—C19—H19C | 109.5 | C11—C10—C20 | 121.73 (18) |
H19A—C19—H19C | 109.5 | C8—C9—C10 | 121.49 (18) |
H19B—C19—H19C | 109.5 | C8—C9—H9 | 119.3 |
C18—C13—C14 | 119.04 (18) | C10—C9—H9 | 119.3 |
C18—C13—C6 | 117.98 (16) | C7—C8—C9 | 118.83 (17) |
C14—C13—C6 | 122.89 (17) | C7—C8—H8 | 120.6 |
C13—C18—C17 | 120.33 (18) | C9—C8—H8 | 120.6 |
C13—C18—H18 | 119.8 | C10—C20—H20A | 109.5 |
C17—C18—H18 | 119.8 | C10—C20—H20B | 109.5 |
C16—C17—C18 | 119.96 (19) | H20A—C20—H20B | 109.5 |
C16—C17—H17 | 120 | C10—C20—H20C | 109.5 |
C18—C17—H17 | 120 | H20A—C20—H20C | 109.5 |
C17—C16—C15 | 119.90 (19) | H20B—C20—H20C | 109.5 |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5···N3i | 0.93 | 2.49 | 3.293 (2) | 145 |
C5—H5···Se1i | 0.93 | 3.10 | 3.974 (2) | 156 |
C8—H8···N3ii | 0.93 | 2.41 | 3.279 (2) | 155 |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) −x+1, −y, −z+2. |
1-(4-Chlorophenyl)-4-methyl-6-phenylpyrimidine-2(1
H)-selenone (4)
top
Crystal data top
C17H13ClN2Se | F(000) = 720 |
Mr = 359.7 | Dx = 1.519 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 6956 reflections |
a = 13.7780 (2) Å | θ = 1.0–27.5° |
b = 11.4050 (2) Å | µ = 2.55 mm−1 |
c = 10.4020 (3) Å | T = 100 K |
β = 105.828 (1)° | Prism, red |
V = 1572.58 (6) Å3 | 0.39 × 0.25 × 0.22 mm |
Z = 4 | |
Data collection top
Nonius KappaCCD diffractometer | 3593 independent reflections |
Horizonally mounted graphite crystal monochromator | 3227 reflections with I > 2σ(I) |
Detector resolution: 9 pixels mm-1 | Rint = 0.027 |
CCD scans | θmax = 27.5°, θmin = 3.4° |
Absorption correction: multi-scan (DENZO-SMN; Otwinowski & Minor, 1997) | h = −17→17 |
Tmin = 0.876, Tmax = 1 | k = −14→14 |
12403 measured reflections | l = −12→13 |
Refinement top
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.022 | w = 1/[σ2(Fo2) + (0.0224P)2 + 1.1006P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.056 | (Δ/σ)max = 0.002 |
S = 1.05 | Δρmax = 0.30 e Å−3 |
3593 reflections | Δρmin = −0.35 e Å−3 |
192 parameters | Extinction correction: SHELXL2018 (Sheldrick, 2015), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
0 restraints | Extinction coefficient: 0.0059 (5) |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N3 | 0.96317 (10) | 0.16230 (12) | 1.05526 (13) | 0.0153 (3) | |
C4 | 0.97265 (12) | 0.23172 (14) | 0.95698 (16) | 0.0162 (3) | |
C5 | 0.90930 (12) | 0.22187 (14) | 0.82610 (16) | 0.0174 (3) | |
H5 | 0.916405 | 0.273634 | 0.757689 | 0.021* | |
C6 | 0.83760 (12) | 0.13642 (14) | 0.79980 (15) | 0.0152 (3) | |
N1 | 0.83143 (10) | 0.06093 (12) | 0.90075 (13) | 0.0140 (3) | |
C2 | 0.89430 (12) | 0.07458 (14) | 1.02985 (15) | 0.0150 (3) | |
C19 | 1.05269 (13) | 0.32379 (15) | 0.98901 (17) | 0.0213 (3) | |
H19A | 1.065433 | 0.347039 | 1.08285 | 0.032* | |
H19B | 1.030304 | 0.39219 | 0.931541 | 0.032* | |
H19C | 1.114852 | 0.292584 | 0.973665 | 0.032* | |
C13 | 0.76513 (12) | 0.12450 (14) | 0.66545 (15) | 0.0162 (3) | |
C18 | 0.80158 (13) | 0.10071 (15) | 0.55566 (16) | 0.0197 (3) | |
H18 | 0.871803 | 0.089568 | 0.567525 | 0.024* | |
C17 | 0.73473 (15) | 0.09333 (16) | 0.42851 (17) | 0.0256 (4) | |
H17 | 0.759181 | 0.076517 | 0.353492 | 0.031* | |
C16 | 0.63272 (15) | 0.11054 (17) | 0.41178 (18) | 0.0276 (4) | |
H16 | 0.587301 | 0.105833 | 0.324916 | 0.033* | |
C15 | 0.59594 (14) | 0.13468 (17) | 0.52084 (19) | 0.0281 (4) | |
H15 | 0.525716 | 0.146365 | 0.508493 | 0.034* | |
C14 | 0.66225 (13) | 0.14164 (16) | 0.64792 (17) | 0.0228 (4) | |
H14 | 0.637465 | 0.158074 | 0.722745 | 0.027* | |
C7 | 0.76596 (12) | −0.04089 (14) | 0.86602 (15) | 0.0154 (3) | |
C12 | 0.79215 (12) | −0.12537 (14) | 0.78611 (16) | 0.0173 (3) | |
H12 | 0.853301 | −0.118485 | 0.761166 | 0.021* | |
C11 | 0.72840 (12) | −0.22056 (14) | 0.74242 (17) | 0.0197 (3) | |
H11 | 0.744807 | −0.278802 | 0.686499 | 0.024* | |
C10 | 0.64068 (13) | −0.22849 (15) | 0.78219 (17) | 0.0206 (3) | |
C9 | 0.61518 (13) | −0.14525 (16) | 0.86483 (17) | 0.0220 (3) | |
H9 | 0.555301 | −0.153636 | 0.892524 | 0.026* | |
C8 | 0.67834 (13) | −0.04950 (15) | 0.90652 (16) | 0.0197 (3) | |
H8 | 0.661738 | 0.009099 | 0.961878 | 0.024* | |
Se1 | 0.88616 (2) | −0.02359 (2) | 1.16677 (2) | 0.01812 (7) | |
Cl1 | 0.56019 (3) | −0.34709 (4) | 0.72652 (5) | 0.02899 (11) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N3 | 0.0183 (7) | 0.0158 (6) | 0.0129 (6) | 0.0010 (5) | 0.0058 (5) | −0.0009 (5) |
C4 | 0.0194 (8) | 0.0154 (7) | 0.0151 (7) | 0.0022 (6) | 0.0067 (6) | −0.0005 (6) |
C5 | 0.0237 (8) | 0.0156 (7) | 0.0135 (7) | 0.0006 (6) | 0.0064 (6) | 0.0024 (6) |
C6 | 0.0183 (8) | 0.0160 (7) | 0.0122 (7) | 0.0031 (6) | 0.0055 (6) | 0.0003 (6) |
N1 | 0.0166 (6) | 0.0145 (6) | 0.0118 (6) | 0.0001 (5) | 0.0052 (5) | 0.0001 (5) |
C2 | 0.0174 (8) | 0.0156 (7) | 0.0128 (7) | 0.0029 (6) | 0.0058 (6) | −0.0011 (6) |
C19 | 0.0260 (9) | 0.0202 (8) | 0.0174 (8) | −0.0052 (7) | 0.0056 (7) | −0.0008 (6) |
C13 | 0.0213 (8) | 0.0141 (7) | 0.0128 (7) | 0.0005 (6) | 0.0041 (6) | 0.0014 (6) |
C18 | 0.0235 (8) | 0.0209 (8) | 0.0153 (8) | −0.0012 (7) | 0.0064 (6) | 0.0001 (6) |
C17 | 0.0354 (10) | 0.0266 (9) | 0.0147 (8) | −0.0018 (7) | 0.0067 (7) | −0.0020 (7) |
C16 | 0.0346 (10) | 0.0261 (9) | 0.0164 (8) | 0.0004 (8) | −0.0028 (7) | −0.0004 (7) |
C15 | 0.0231 (9) | 0.0323 (10) | 0.0251 (9) | 0.0052 (7) | 0.0001 (7) | 0.0014 (7) |
C14 | 0.0243 (9) | 0.0260 (9) | 0.0177 (8) | 0.0054 (7) | 0.0050 (7) | 0.0007 (7) |
C7 | 0.0162 (7) | 0.0170 (8) | 0.0125 (7) | −0.0001 (6) | 0.0031 (6) | 0.0019 (6) |
C12 | 0.0166 (7) | 0.0177 (8) | 0.0182 (8) | 0.0014 (6) | 0.0057 (6) | 0.0018 (6) |
C11 | 0.0203 (8) | 0.0165 (8) | 0.0219 (8) | 0.0016 (6) | 0.0049 (6) | −0.0005 (6) |
C10 | 0.0189 (8) | 0.0184 (8) | 0.0223 (8) | −0.0020 (6) | 0.0021 (6) | 0.0047 (6) |
C9 | 0.0161 (8) | 0.0286 (9) | 0.0227 (8) | −0.0010 (7) | 0.0074 (7) | 0.0042 (7) |
C8 | 0.0200 (8) | 0.0241 (8) | 0.0163 (8) | 0.0019 (6) | 0.0073 (6) | 0.0004 (6) |
Se1 | 0.02780 (10) | 0.01574 (9) | 0.01163 (9) | −0.00042 (6) | 0.00676 (6) | 0.00179 (6) |
Cl1 | 0.0233 (2) | 0.0231 (2) | 0.0381 (3) | −0.00756 (17) | 0.00418 (18) | 0.00154 (18) |
Geometric parameters (Å, º) top
N3—C4 | 1.327 (2) | C17—C16 | 1.382 (3) |
N3—C2 | 1.354 (2) | C17—H17 | 0.95 |
C4—C5 | 1.407 (2) | C16—C15 | 1.390 (3) |
C4—C19 | 1.493 (2) | C16—H16 | 0.95 |
C5—C6 | 1.361 (2) | C15—C14 | 1.389 (2) |
C5—H5 | 0.95 | C15—H15 | 0.95 |
C6—N1 | 1.378 (2) | C14—H14 | 0.95 |
C6—C13 | 1.486 (2) | C7—C12 | 1.383 (2) |
N1—C2 | 1.394 (2) | C7—C8 | 1.386 (2) |
N1—C7 | 1.454 (2) | C12—C11 | 1.392 (2) |
C2—Se1 | 1.8389 (16) | C12—H12 | 0.95 |
C19—H19A | 0.98 | C11—C10 | 1.383 (2) |
C19—H19B | 0.98 | C11—H11 | 0.95 |
C19—H19C | 0.98 | C10—C9 | 1.389 (3) |
C13—C14 | 1.393 (2) | C10—Cl1 | 1.7450 (17) |
C13—C18 | 1.394 (2) | C9—C8 | 1.390 (2) |
C18—C17 | 1.393 (2) | C9—H9 | 0.95 |
C18—H18 | 0.95 | C8—H8 | 0.95 |
| | | |
C4—N3—C2 | 120.08 (14) | C16—C17—H17 | 120.1 |
N3—C4—C5 | 122.15 (15) | C18—C17—H17 | 120.1 |
N3—C4—C19 | 118.00 (14) | C17—C16—C15 | 120.65 (16) |
C5—C4—C19 | 119.84 (14) | C17—C16—H16 | 119.7 |
C6—C5—C4 | 118.44 (14) | C15—C16—H16 | 119.7 |
C6—C5—H5 | 120.8 | C14—C15—C16 | 119.75 (18) |
C4—C5—H5 | 120.8 | C14—C15—H15 | 120.1 |
C5—C6—N1 | 119.09 (14) | C16—C15—H15 | 120.1 |
C5—C6—C13 | 121.28 (14) | C15—C14—C13 | 119.89 (17) |
N1—C6—C13 | 119.62 (14) | C15—C14—H14 | 120.1 |
C6—N1—C2 | 120.86 (13) | C13—C14—H14 | 120.1 |
C6—N1—C7 | 118.19 (13) | C12—C7—C8 | 121.65 (15) |
C2—N1—C7 | 120.59 (13) | C12—C7—N1 | 117.37 (14) |
N3—C2—N1 | 119.26 (14) | C8—C7—N1 | 120.91 (14) |
N3—C2—Se1 | 119.08 (11) | C7—C12—C11 | 119.64 (15) |
N1—C2—Se1 | 121.66 (11) | C7—C12—H12 | 120.2 |
C4—C19—H19A | 109.5 | C11—C12—H12 | 120.2 |
C4—C19—H19B | 109.5 | C10—C11—C12 | 118.57 (16) |
H19A—C19—H19B | 109.5 | C10—C11—H11 | 120.7 |
C4—C19—H19C | 109.5 | C12—C11—H11 | 120.7 |
H19A—C19—H19C | 109.5 | C11—C10—C9 | 121.99 (16) |
H19B—C19—H19C | 109.5 | C11—C10—Cl1 | 118.66 (14) |
C14—C13—C18 | 120.09 (15) | C9—C10—Cl1 | 119.35 (13) |
C14—C13—C6 | 120.61 (15) | C10—C9—C8 | 119.18 (15) |
C18—C13—C6 | 119.25 (15) | C10—C9—H9 | 120.4 |
C17—C18—C13 | 119.81 (16) | C8—C9—H9 | 120.4 |
C17—C18—H18 | 120.1 | C7—C8—C9 | 118.94 (16) |
C13—C18—H18 | 120.1 | C7—C8—H8 | 120.5 |
C16—C17—C18 | 119.81 (17) | C9—C8—H8 | 120.5 |
| | | |
C2—N3—C4—C5 | 3.5 (2) | C6—C13—C18—C17 | −177.79 (16) |
C2—N3—C4—C19 | −177.39 (14) | C13—C18—C17—C16 | 0.5 (3) |
N3—C4—C5—C6 | −1.4 (2) | C18—C17—C16—C15 | −0.3 (3) |
C19—C4—C5—C6 | 179.47 (15) | C17—C16—C15—C14 | 0.0 (3) |
C4—C5—C6—N1 | −1.8 (2) | C16—C15—C14—C13 | 0.0 (3) |
C4—C5—C6—C13 | 177.16 (14) | C18—C13—C14—C15 | 0.2 (3) |
C5—C6—N1—C2 | 3.0 (2) | C6—C13—C14—C15 | 177.49 (16) |
C13—C6—N1—C2 | −175.99 (14) | C6—N1—C7—C12 | 65.85 (19) |
C5—C6—N1—C7 | −170.15 (14) | C2—N1—C7—C12 | −107.30 (17) |
C13—C6—N1—C7 | 10.9 (2) | C6—N1—C7—C8 | −111.15 (17) |
C4—N3—C2—N1 | −2.3 (2) | C2—N1—C7—C8 | 75.70 (19) |
C4—N3—C2—Se1 | 177.73 (11) | C8—C7—C12—C11 | 1.4 (2) |
C6—N1—C2—N3 | −1.0 (2) | N1—C7—C12—C11 | −175.61 (14) |
C7—N1—C2—N3 | 171.99 (14) | C7—C12—C11—C10 | −0.9 (2) |
C6—N1—C2—Se1 | 179.03 (11) | C12—C11—C10—C9 | −0.6 (3) |
C7—N1—C2—Se1 | −8.00 (19) | C12—C11—C10—Cl1 | 179.51 (12) |
C5—C6—C13—C14 | −115.64 (19) | C11—C10—C9—C8 | 1.5 (3) |
N1—C6—C13—C14 | 63.3 (2) | Cl1—C10—C9—C8 | −178.56 (13) |
C5—C6—C13—C18 | 61.7 (2) | C12—C7—C8—C9 | −0.4 (2) |
N1—C6—C13—C18 | −119.37 (17) | N1—C7—C8—C9 | 176.47 (14) |
C14—C13—C18—C17 | −0.4 (3) | C10—C9—C8—C7 | −1.0 (2) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5···N3i | 0.95 | 2.47 | 3.372 (2) | 158 |
C5—H5···Se1i | 0.95 | 3 | 3.795 (2) | 143 |
C11—H11···Se1ii | 0.95 | 3.02 | 3.846 (2) | 146 |
C14—H14···Cl1iii | 0.95 | 2.91 | 3.648 (2) | 135 |
C19—H19A···Se1iv | 0.98 | 2.91 | 3.862 (2) | 165 |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) x, −y−1/2, z−1/2; (iii) −x+1, y+1/2, −z+3/2; (iv) −x+2, y+1/2, −z+5/2. |
The antimicrobial activity (µg ml-1) of compounds 1–3 top | | 1 | | 2 | | 3 | |
Bacteria | Microorganisms | MIC | MBC | MIC | MBC | MIC | MBC |
| S. aureus ATCC 6538 | 15.6 | 31.25 | 15.6 | 31.25 | 15.6 | 62.5 |
| S. aureus ATCC 25923 | 1.95 | 62.5 | 1.95 | 62.5 | 1.95 | 3.9 |
| S. aureus ATCC 43300 | 1.95 | 3.9 | 1.95 | 3.9 | 1.95 | 3.9 |
| S. epidermidis ATCC 12228 | 0.98 | 3.9 | 0.98 | 3.9 | 0.98 | 1.95 |
| M. luteus ATCC 10240 | 0.98 | 1.95 | 0.98 | 1.95 | 0.98 | 1.95 |
| B. subtilis ATCC 6633 | 1250 | >5000 | 1250 | >5000 | 1250 | >5000 |
| B. cereus ATCC 10876 | 2500 | >5000 | 2500 | >5000 | 2500 | >5000 |
| S. pyogenes ATCC 19615 | 1250 | 5000 | 1250 | 5000 | 2500 | 5000 |
| S. pneumoniae ATCC 49619 | 1250 | 1250 | 1250 | 1250 | 2500 | 2500 |
| S. mutans ATCC 25175 | 1250 | 1250 | 1250 | 1250 | 2500 | 2500 |
Yeasts | C. albicans ATCC 102231 | 1.95 | 3.9 | 1.95 | 3.9 | 7.8 | 15.6 |
| C. albicans ATCC 2091 | 1.95 | 7.8 | 1.95 | 7.8 | 7.8 | 31.5 |
| C. parapsilosis ATCC 22019 | 0.49 | 0.98 | 0.49 | 0.98 | 0.49 | 0.98 |
The antimicrobial activity (µg ml-1) of compounds 4–6 top | | 4 | | 5 | | 6 | |
Bacteria | Microorganisms | MIC | MBC | MIC | MBC | MIC | MBC |
| S. aureus ATCC 6538 | 3.9 | 15.6 | 3.9 | 15.6 | 31.25 | 62.5 |
| S. aureus ATCC 25923 | 1.95 | 15.6 | 3.9 | 62.5 | 62.5 | 250 |
| S. aureus ATCC 43300 | 1.95 | 3.9 | 1.95 | 3.9 | 31.25 | 31.25 |
| S. epidermidis ATCC 12228 | 0.98 | 1.95 | 1.95 | 15.6 | 31.25 | 62.5 |
| M. luteus ATCC 10240 | 0.98 | 1.95 | 0.98 | 1.95 | 31.25 | 62.5 |
| B. subtilis ATCC 6633 | 2500 | >5000 | 2500 | >5000 | 2500 | >5000 |
| B. cereus ATCC 10876 | 2500 | >5000 | 2500 | >5000 | 2500 | >5000 |
| S. pyogenes ATCC 19615 | 1250 | 5000 | 2500 | 5000 | >5000 | >5000 |
| S. pneumoniae ATCC 49619 | 1250 | 2500 | 2500 | 5000 | >5000 | >5000 |
| S. mutans ATCC 25175 | 1250 | 1250 | 2500 | 5000 | >5000 | >5000 |
Yeasts | C. albicans ATCC 102231 | 3.95 | 15.6 | 62.5 | 1000 | 62.5 | 125 |
| C. albicans ATCC 2091 | 3.95 | 15.6 | 31.25 | 500 | 125 | 250 |
| C. parapsilosis ATCC 22019 | 0.49 | 0.98 | 15.6 | 31.25 | 0.98 | 1.95 |
The antimicrobial activity (µg ml-1) of reference compounds vancomycin and
fluconazole [What does the asterisk signify?] top | | Vancomycin/Fluconazole* | Vancomycin/Fluconazole* |
Bacteria | Microorganisms | MIC | MBC |
| S. aureus ATCC 6538 | 0.49 | 1.95 |
| S. aureus ATCC 25923 | 0.98 | 7.81 |
| S. aureus ATCC 43300 | 0.49 | 1.95 |
| S. epidermidis ATCC 12228 | 0.98 | 0.98 |
| M. luteus ATCC 10240 | 0.12 | 0.12 |
| B. subtilis ATCC 6633 | 0.24 | 0.49 |
| B. cereus ATCC 10876 | 0.98 | 15.6 |
| S. pyogenes ATCC 19615 | 0.24 | 0.49 |
| S. pneumoniae ATCC 49619 | 0.24 | 0.49 |
| S. mutans ATCC 25175 | 0.98 | 0.98 |
Yeasts | C. albicans ATCC 102231 | 0.98* | 1.95* |
| C. albicans ATCC 2091 | 0.25* | 0.25* |
| C. parapsilosis ATCC 22019 | 1.95* | 1.95* |