Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S160053680702661X/hk2262sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S160053680702661X/hk2262Isup2.hkl |
CCDC reference: 654880
2,8-Dibromo-6H,12H-5,11-methanodibenzo[b,f][1,5] diazocine (5.0 g, 13.16 mmol) was dissolved in absolute ethanol (750 ml) and dichloromethane (200 ml). Palladium, 10 wt. % on activated carbon (0.2 g) was added and the mixture was stirred under hydrogen atmosphere in the dark for 7 d. The reaction mixture was washed through celite, evaporated to dryness to afford a pale yellow solid. The solid was dissolved in dichloromethane (450 ml), basified with sodium hydrogen carbonate (2 x 400 ml). The mixture was extracted into dichloromethane (2 x 100 ml). The combined organic layers were washed with brine (100 ml), dried over anhydrous sodium sulfate, filtered and evaporated to dryness to afford the title compound (yield; 2.86 g, 98%) as a white solid. No further purification was needed: m.p. 413.62 K (DSC) (411–412 K (Cooper & Partridge, 1955), 403–404 K (Li et al., 2005), 409.5–410 K (Jensen et al., 2002). Single crystals of (I) were produced from slow evaporation of a dichloromethane solution.
H atoms were positioned geometrically, with C—H = 0.95 and 0.99 Å for aromatic and methylene H atoms, respectively, and constrained to ride on their parent atoms, with Uiso(H) = 1.2Ueq(C).
Tröger's base analogues are chiral, cavity-containing compounds with a V-shaped structure where two aromatic rings define the walls of the cavity. An important feature of all Tröger's base analogues is the methano-strapped diazocine bridge that imparts a twist within the compounds such that the two aryl rings are offset with respect to one another. The dihedral angle between these rings has been measured to lie between 82° (Solano et al., 2005) and 108.44 (4)° (Faroughi et al., 2006b) for simple dibenzo Tröger's base analogues, and is dependent upon the nature of the substituents on the aromatic rings. We have previously reported that the dihedral angles in 2,8-Dichloro and 2,8-dibromo Tröger's bases are 95.64 (3)° (Faroughi et al., 2007) and 94.45 (4)° (Faroughi et al., 2006a), respectively, and now report that the title compound, (I), has a very similar structure. Compound (I) is devoid of any substitutents and in the minimum energy conformation, the dihedral angle of this compound was calculated to be 101.33 ° (Pardo et al., 2006).
We were interested in preparing a range of dihalo Tröger's base analogues as precursors for supramolecular recognition elements. The synthesis of (I) in racemic form was achieved by hydrogenolysis of the 2,8-dibromo analogue.
In the molecule of the title compound, (I), (Fig. 1) the bond lengths and angles are within normal ranges (Allen et al., 1987). Rings B (N1/N2/C1/C6—C8) and C (N1/N2/C8/C9/C14/C15) are not planar, having total puckering amplitudes, QT, of 1.395 (3) and 0.668 (3) Å, respectively and twist conformations φ = -116.62 (3)°, θ = 109.90 (2)° and φ = -51.67 (3)°, θ = 113.44 (3)° (Cremer & Pople, 1975). Rings A (C1—C6) and D (C9—C14) are, of course, planar and the dihedral angle between them is 95.42 (4)°.
For general background, see: Solano et al. (2005); Allen et al. (1987); Cremer & Pople (1975). For related literature, see: Pardo et al. (2006); Faroughi et al. (2006a,b); Faroughi et al. (2007); Cooper & Partridge (1955); Li et al. (2005); Jensen et al. (2002).
Data collection: SMART (Bruker, 1998); cell refinement: SAINT (Bruker, 2003); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: X-SEED (Barbour, 2001) and SHELXTL (Bruker, 2003); software used to prepare material for publication: modiCIFer (Guzei, 2005).
Fig. 1. The molecular structure of (I) with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. | |
Fig. 2. Preparation of the title compound. |
C15H14N2 | F(000) = 472 |
Mr = 222.28 | Dx = 1.323 Mg m−3 |
Monoclinic, P21/c | Melting point: 413 K |
Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
a = 12.266 (2) Å | Cell parameters from 6144 reflections |
b = 7.362 (1) Å | θ = 3.2–28.4° |
c = 12.759 (2) Å | µ = 0.08 mm−1 |
β = 104.457 (2)° | T = 150 K |
V = 1115.7 (3) Å3 | Prism, colorless |
Z = 4 | 0.50 × 0.50 × 0.42 mm |
Bruker SMART 1000 CCD area-detector diffractometer | 2701 independent reflections |
Radiation source: fine-focus sealed tube | 2297 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.038 |
ω scans | θmax = 28.4°, θmin = 1.7° |
Absorption correction: integration [Gaussian (Coppens et al., 1965) and XPREP (Siemens, 1995)] | h = −16→16 |
Tmin = 0.964, Tmax = 0.976 | k = −9→9 |
10679 measured reflections | l = −16→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.038 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.106 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0499P)2 + 0.3391P] where P = (Fo2 + 2Fc2)/3 |
2701 reflections | (Δ/σ)max < 0.001 |
154 parameters | Δρmax = 0.32 e Å−3 |
0 restraints | Δρmin = −0.15 e Å−3 |
C15H14N2 | V = 1115.7 (3) Å3 |
Mr = 222.28 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 12.266 (2) Å | µ = 0.08 mm−1 |
b = 7.362 (1) Å | T = 150 K |
c = 12.759 (2) Å | 0.50 × 0.50 × 0.42 mm |
β = 104.457 (2)° |
Bruker SMART 1000 CCD area-detector diffractometer | 2701 independent reflections |
Absorption correction: integration [Gaussian (Coppens et al., 1965) and XPREP (Siemens, 1995)] | 2297 reflections with I > 2σ(I) |
Tmin = 0.964, Tmax = 0.976 | Rint = 0.038 |
10679 measured reflections |
R[F2 > 2σ(F2)] = 0.038 | 0 restraints |
wR(F2) = 0.106 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.32 e Å−3 |
2701 reflections | Δρmin = −0.15 e Å−3 |
154 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.18891 (7) | 0.28087 (13) | −0.03028 (7) | 0.0219 (2) | |
N2 | 0.26653 (8) | 0.18258 (13) | 0.15515 (7) | 0.0235 (2) | |
C1 | 0.15935 (8) | 0.09549 (15) | −0.05815 (8) | 0.0201 (2) | |
C2 | 0.12619 (9) | 0.04813 (16) | −0.16752 (9) | 0.0239 (2) | |
H2 | 0.1245 | 0.1383 | −0.2212 | 0.029* | |
C3 | 0.09587 (9) | −0.12837 (17) | −0.19852 (9) | 0.0280 (3) | |
H3 | 0.0740 | −0.1591 | −0.2732 | 0.034* | |
C4 | 0.09733 (9) | −0.26109 (16) | −0.12057 (10) | 0.0286 (3) | |
H4 | 0.0766 | −0.3826 | −0.1415 | 0.034* | |
C5 | 0.12936 (9) | −0.21395 (16) | −0.01225 (10) | 0.0263 (2) | |
H5 | 0.1288 | −0.3041 | 0.0409 | 0.032* | |
C6 | 0.16238 (8) | −0.03768 (15) | 0.02097 (9) | 0.0216 (2) | |
C7 | 0.20637 (9) | 0.00762 (16) | 0.13997 (9) | 0.0257 (2) | |
H7A | 0.1426 | 0.0132 | 0.1745 | 0.031* | |
H7B | 0.2580 | −0.0898 | 0.1759 | 0.031* | |
C8 | 0.19490 (9) | 0.31378 (16) | 0.08392 (9) | 0.0250 (2) | |
H8A | 0.2245 | 0.4376 | 0.1034 | 0.030* | |
H8B | 0.1181 | 0.3080 | 0.0953 | 0.030* | |
C9 | 0.37554 (9) | 0.17298 (15) | 0.13212 (8) | 0.0213 (2) | |
C10 | 0.46315 (9) | 0.08515 (16) | 0.20605 (9) | 0.0262 (2) | |
H10 | 0.4491 | 0.0277 | 0.2681 | 0.031* | |
C11 | 0.57021 (10) | 0.08172 (17) | 0.18908 (10) | 0.0294 (3) | |
H11 | 0.6292 | 0.0203 | 0.2390 | 0.035* | |
C12 | 0.59195 (9) | 0.16755 (17) | 0.09953 (10) | 0.0285 (3) | |
H12 | 0.6661 | 0.1691 | 0.0895 | 0.034* | |
C13 | 0.50467 (10) | 0.25091 (15) | 0.02499 (9) | 0.0252 (2) | |
H13 | 0.5194 | 0.3079 | −0.0368 | 0.030* | |
C14 | 0.39554 (9) | 0.25259 (14) | 0.03911 (9) | 0.0211 (2) | |
C15 | 0.29950 (9) | 0.33096 (15) | −0.04816 (9) | 0.0236 (2) | |
H15A | 0.3063 | 0.4649 | −0.0485 | 0.028* | |
H15B | 0.3047 | 0.2854 | −0.1198 | 0.028* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0195 (4) | 0.0218 (5) | 0.0237 (4) | 0.0013 (3) | 0.0043 (3) | 0.0017 (3) |
N2 | 0.0222 (5) | 0.0278 (5) | 0.0210 (4) | 0.0018 (4) | 0.0060 (3) | −0.0004 (4) |
C1 | 0.0140 (4) | 0.0230 (5) | 0.0235 (5) | 0.0017 (4) | 0.0050 (4) | 0.0007 (4) |
C2 | 0.0191 (5) | 0.0295 (6) | 0.0224 (5) | 0.0020 (4) | 0.0038 (4) | 0.0023 (4) |
C3 | 0.0206 (5) | 0.0356 (6) | 0.0265 (5) | 0.0005 (5) | 0.0032 (4) | −0.0069 (5) |
C4 | 0.0194 (5) | 0.0254 (6) | 0.0400 (7) | −0.0016 (4) | 0.0055 (4) | −0.0056 (5) |
C5 | 0.0207 (5) | 0.0251 (6) | 0.0336 (6) | −0.0001 (4) | 0.0077 (4) | 0.0049 (5) |
C6 | 0.0161 (5) | 0.0256 (5) | 0.0239 (5) | 0.0009 (4) | 0.0064 (4) | 0.0020 (4) |
C7 | 0.0254 (5) | 0.0304 (6) | 0.0223 (5) | −0.0017 (4) | 0.0081 (4) | 0.0042 (4) |
C8 | 0.0223 (5) | 0.0264 (6) | 0.0260 (5) | 0.0041 (4) | 0.0057 (4) | −0.0032 (4) |
C9 | 0.0205 (5) | 0.0212 (5) | 0.0215 (5) | 0.0005 (4) | 0.0040 (4) | −0.0030 (4) |
C10 | 0.0276 (6) | 0.0273 (6) | 0.0217 (5) | 0.0018 (4) | 0.0025 (4) | 0.0013 (4) |
C11 | 0.0234 (5) | 0.0287 (6) | 0.0317 (6) | 0.0045 (5) | −0.0014 (4) | 0.0001 (5) |
C12 | 0.0188 (5) | 0.0276 (6) | 0.0387 (6) | 0.0004 (4) | 0.0063 (5) | −0.0028 (5) |
C13 | 0.0231 (5) | 0.0236 (6) | 0.0296 (6) | −0.0026 (4) | 0.0078 (4) | 0.0001 (4) |
C14 | 0.0202 (5) | 0.0183 (5) | 0.0237 (5) | −0.0003 (4) | 0.0034 (4) | −0.0009 (4) |
C15 | 0.0210 (5) | 0.0233 (5) | 0.0256 (5) | −0.0015 (4) | 0.0041 (4) | 0.0051 (4) |
N1—C1 | 1.4340 (14) | C7—H7A | 0.9900 |
N1—C8 | 1.4607 (14) | C7—H7B | 0.9900 |
N1—C15 | 1.4774 (13) | C8—H8A | 0.9900 |
N2—C9 | 1.4406 (13) | C8—H8B | 0.9900 |
N2—C8 | 1.4602 (14) | C9—C10 | 1.3988 (15) |
N2—C7 | 1.4730 (15) | C9—C14 | 1.3990 (15) |
C1—C2 | 1.3967 (15) | C10—C11 | 1.3835 (16) |
C1—C6 | 1.4010 (15) | C10—H10 | 0.9500 |
C2—C3 | 1.3819 (17) | C11—C12 | 1.3885 (17) |
C2—H2 | 0.9500 | C11—H11 | 0.9500 |
C3—C4 | 1.3911 (18) | C12—C13 | 1.3853 (16) |
C3—H3 | 0.9500 | C12—H12 | 0.9500 |
C4—C5 | 1.3834 (17) | C13—C14 | 1.3945 (15) |
C4—H4 | 0.9500 | C13—H13 | 0.9500 |
C5—C6 | 1.3936 (16) | C14—C15 | 1.5184 (14) |
C5—H5 | 0.9500 | C15—H15A | 0.9900 |
C6—C7 | 1.5161 (15) | C15—H15B | 0.9900 |
C1—N1—C8 | 110.60 (9) | N2—C8—N1 | 112.56 (9) |
C1—N1—C15 | 112.60 (8) | N2—C8—H8A | 109.1 |
C8—N1—C15 | 107.05 (8) | N1—C8—H8A | 109.1 |
C9—N2—C8 | 110.51 (9) | N2—C8—H8B | 109.1 |
C9—N2—C7 | 112.97 (9) | N1—C8—H8B | 109.1 |
C8—N2—C7 | 107.02 (9) | H8A—C8—H8B | 107.8 |
C2—C1—C6 | 119.60 (10) | C10—C9—C14 | 119.85 (10) |
C2—C1—N1 | 118.55 (9) | C10—C9—N2 | 118.75 (10) |
C6—C1—N1 | 121.85 (9) | C14—C9—N2 | 121.38 (9) |
C3—C2—C1 | 120.74 (10) | C11—C10—C9 | 120.16 (11) |
C3—C2—H2 | 119.6 | C11—C10—H10 | 119.9 |
C1—C2—H2 | 119.6 | C9—C10—H10 | 119.9 |
C2—C3—C4 | 120.08 (11) | C10—C11—C12 | 120.34 (10) |
C2—C3—H3 | 120.0 | C10—C11—H11 | 119.8 |
C4—C3—H3 | 120.0 | C12—C11—H11 | 119.8 |
C5—C4—C3 | 119.20 (11) | C13—C12—C11 | 119.50 (10) |
C5—C4—H4 | 120.4 | C13—C12—H12 | 120.3 |
C3—C4—H4 | 120.4 | C11—C12—H12 | 120.3 |
C4—C5—C6 | 121.73 (11) | C12—C13—C14 | 121.16 (10) |
C4—C5—H5 | 119.1 | C12—C13—H13 | 119.4 |
C6—C5—H5 | 119.1 | C14—C13—H13 | 119.4 |
C5—C6—C1 | 118.62 (10) | C13—C14—C9 | 118.89 (10) |
C5—C6—C7 | 120.88 (10) | C13—C14—C15 | 120.17 (9) |
C1—C6—C7 | 120.43 (10) | C9—C14—C15 | 120.86 (9) |
N2—C7—C6 | 111.43 (9) | N1—C15—C14 | 111.48 (9) |
N2—C7—H7A | 109.3 | N1—C15—H15A | 109.3 |
C6—C7—H7A | 109.3 | C14—C15—H15A | 109.3 |
N2—C7—H7B | 109.3 | N1—C15—H15B | 109.3 |
C6—C7—H7B | 109.3 | C14—C15—H15B | 109.3 |
H7A—C7—H7B | 108.0 | H15A—C15—H15B | 108.0 |
C8—N1—C1—C2 | 166.47 (9) | C1—N1—C8—N2 | 51.79 (12) |
C15—N1—C1—C2 | −73.82 (11) | C15—N1—C8—N2 | −71.21 (11) |
C8—N1—C1—C6 | −13.21 (13) | C8—N2—C9—C10 | 166.53 (10) |
C15—N1—C1—C6 | 106.51 (11) | C7—N2—C9—C10 | −73.59 (12) |
C6—C1—C2—C3 | 0.29 (15) | C8—N2—C9—C14 | −12.12 (14) |
N1—C1—C2—C3 | −179.39 (9) | C7—N2—C9—C14 | 107.76 (11) |
C1—C2—C3—C4 | 0.47 (16) | C14—C9—C10—C11 | 2.00 (16) |
C2—C3—C4—C5 | 0.02 (16) | N2—C9—C10—C11 | −176.68 (10) |
C3—C4—C5—C6 | −1.30 (16) | C9—C10—C11—C12 | 0.95 (18) |
C4—C5—C6—C1 | 2.04 (16) | C10—C11—C12—C13 | −2.43 (18) |
C4—C5—C6—C7 | −174.88 (10) | C11—C12—C13—C14 | 0.98 (17) |
C2—C1—C6—C5 | −1.51 (15) | C12—C13—C14—C9 | 1.92 (16) |
N1—C1—C6—C5 | 178.16 (9) | C12—C13—C14—C15 | −174.93 (10) |
C2—C1—C6—C7 | 175.42 (9) | C10—C9—C14—C13 | −3.39 (15) |
N1—C1—C6—C7 | −4.91 (15) | N2—C9—C14—C13 | 175.25 (10) |
C9—N2—C7—C6 | −73.65 (11) | C10—C9—C14—C15 | 173.43 (10) |
C8—N2—C7—C6 | 48.21 (11) | N2—C9—C14—C15 | −7.93 (15) |
C5—C6—C7—N2 | 163.19 (9) | C1—N1—C15—C14 | −75.25 (11) |
C1—C6—C7—N2 | −13.68 (13) | C8—N1—C15—C14 | 46.50 (11) |
C9—N2—C8—N1 | 52.38 (12) | C13—C14—C15—N1 | 166.32 (9) |
C7—N2—C8—N1 | −71.01 (11) | C9—C14—C15—N1 | −10.46 (14) |
Experimental details
Crystal data | |
Chemical formula | C15H14N2 |
Mr | 222.28 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 150 |
a, b, c (Å) | 12.266 (2), 7.362 (1), 12.759 (2) |
β (°) | 104.457 (2) |
V (Å3) | 1115.7 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.50 × 0.50 × 0.42 |
Data collection | |
Diffractometer | Bruker SMART 1000 CCD area-detector |
Absorption correction | Integration [Gaussian (Coppens et al., 1965) and XPREP (Siemens, 1995)] |
Tmin, Tmax | 0.964, 0.976 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10679, 2701, 2297 |
Rint | 0.038 |
(sin θ/λ)max (Å−1) | 0.668 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.038, 0.106, 1.06 |
No. of reflections | 2701 |
No. of parameters | 154 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.32, −0.15 |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 2003), SAINT, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), X-SEED (Barbour, 2001) and SHELXTL (Bruker, 2003), modiCIFer (Guzei, 2005).
Tröger's base analogues are chiral, cavity-containing compounds with a V-shaped structure where two aromatic rings define the walls of the cavity. An important feature of all Tröger's base analogues is the methano-strapped diazocine bridge that imparts a twist within the compounds such that the two aryl rings are offset with respect to one another. The dihedral angle between these rings has been measured to lie between 82° (Solano et al., 2005) and 108.44 (4)° (Faroughi et al., 2006b) for simple dibenzo Tröger's base analogues, and is dependent upon the nature of the substituents on the aromatic rings. We have previously reported that the dihedral angles in 2,8-Dichloro and 2,8-dibromo Tröger's bases are 95.64 (3)° (Faroughi et al., 2007) and 94.45 (4)° (Faroughi et al., 2006a), respectively, and now report that the title compound, (I), has a very similar structure. Compound (I) is devoid of any substitutents and in the minimum energy conformation, the dihedral angle of this compound was calculated to be 101.33 ° (Pardo et al., 2006).
We were interested in preparing a range of dihalo Tröger's base analogues as precursors for supramolecular recognition elements. The synthesis of (I) in racemic form was achieved by hydrogenolysis of the 2,8-dibromo analogue.
In the molecule of the title compound, (I), (Fig. 1) the bond lengths and angles are within normal ranges (Allen et al., 1987). Rings B (N1/N2/C1/C6—C8) and C (N1/N2/C8/C9/C14/C15) are not planar, having total puckering amplitudes, QT, of 1.395 (3) and 0.668 (3) Å, respectively and twist conformations φ = -116.62 (3)°, θ = 109.90 (2)° and φ = -51.67 (3)°, θ = 113.44 (3)° (Cremer & Pople, 1975). Rings A (C1—C6) and D (C9—C14) are, of course, planar and the dihedral angle between them is 95.42 (4)°.