Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807019496/hk2235sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807019496/hk2235Isup2.hkl |
CCDC reference: 647699
The title compound was prepared according to a literature procedure (Jensen & Wärnmark, 2001) in 87% yield and recrystallized from chloroform solution.
H atoms were positioned geometrically, with C—H = 0.95 and 0.99 Å for aromatic and methylene H atoms, respectively, and constrained to ride on their parent atoms, with Uiso(H) = 1.2Ueq(C).
Tröger's base was the first chiral compound to be successfully resolved whose optical activity was the result of stereogenic tertiary nitrogen centres. This resolution was achieved through what may have been the first example of a chiral separation using chromatography with a chiral stationary phase (Prelog & Wieland, 1944). An important feature of this family of molecules is the
diazocine bridge that imparts a twist within the compounds such that the two aryl rings are offset with respect to one another. The angle made by the intersection of two least squares planes (as defined by the aryl rings) is referred to as the dihedral angle. This dihedral angle has been measured across a range of compounds to lie between 82° (Solano et al., 2005) and 108.44 (4)° (Faroughi et al., 2006b) for simple dibenzo Tröger's base analogues, and is dependent upon the nature of the substituents on the aromatic rings. We have previously reported that the dihedral angle in 2,8-dibromo Tröger's base is 94.45 (4)° (Faroughi et al., 2006a) and now report that the title compound, (I), has a very similar structure.
We were interested in preparing a range of dihalo Tröger's base analogues as precursors for supramolecular recognition elements. The synthesis of (I) in racemic form was achieved by reacting 4-chloroaniline with paraformaldehyde in trifluoroacetic acid (TFA).
In the molecule of the title compound, (I), the bond lengths and angles are within normal ranges (Allen et al., 1987). Rings B (N1/N2/C1/C6/C7/C15) and C (N1/N2/C8/C13—C15) are not planar, having total puckering amplitudes, QT, of 1.376 (3) and 0.741 (3) Å, respectively and twist conformations φ = -115.97 (3)°, θ = 108.20 (2)° and φ = -31.28 (3)°, θ = 48.67 (3)° (Cremer & Pople, 1975). Rings A (C1—C6) and D (C8—C13) are, of course, planar and the dihedral angle between them is 95.64 (3)°.
For general background, see: Prelog & Wieland (1944); Allen et al. (1987); Cremer & Pople (1975); Jensen & Wärnmark (2001). For related literature, see: Solano et al. (2005); Faroughi et al. (2006a,b).
Data collection: SMART (Siemens, 1995); cell refinement: SAINT (Siemens, 1995); data reduction: SAINT and XPREP (Siemens, 1995); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: TEXSAN for Windows (Molecular Structure Corporation, 1998), Xtal3.6 (Hall et al., 1999), ORTEPII (Johnson, 1976) and WinGX (Farrugia, 1999); software used to prepare material for publication: WinGX.
Fig. 1. The molecular structure of (I) with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. | |
Fig. 2. Reaction scheme. |
C15H12Cl2N2 | Z = 2 |
Mr = 291.17 | F(000) = 300 |
Triclinic, P1 | Dx = 1.469 Mg m−3 |
Hall symbol: -P 1 | Melting point: 402.49 K |
a = 6.3017 (18) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 10.203 (3) Å | Cell parameters from 868 reflections |
c = 10.685 (3) Å | θ = 2.7–28.3° |
α = 83.059 (5)° | µ = 0.48 mm−1 |
β = 77.303 (4)° | T = 150 K |
γ = 80.297 (5)° | Prism, colorless |
V = 658.1 (3) Å3 | 0.40 × 0.30 × 0.25 mm |
Siemens SMART 1000 CCD diffractometer | 3041 independent reflections |
Radiation source: sealed tube | 2845 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.028 |
ω scans | θmax = 28.3°, θmin = 2.0° |
Absorption correction: gaussian [GAUSSIAN (Coppens et al., 1965) and XPREP (Siemens, 1995)] | h = −8→8 |
Tmin = 0.838, Tmax = 0.887 | k = −13→13 |
6481 measured reflections | l = −13→14 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.030 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.077 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.03P)2 + 0.3P] where P = (Fo2 + 2Fc2)/3 |
3041 reflections | (Δ/σ)max = 0.001 |
172 parameters | Δρmax = 0.39 e Å−3 |
0 restraints | Δρmin = −0.31 e Å−3 |
C15H12Cl2N2 | γ = 80.297 (5)° |
Mr = 291.17 | V = 658.1 (3) Å3 |
Triclinic, P1 | Z = 2 |
a = 6.3017 (18) Å | Mo Kα radiation |
b = 10.203 (3) Å | µ = 0.48 mm−1 |
c = 10.685 (3) Å | T = 150 K |
α = 83.059 (5)° | 0.40 × 0.30 × 0.25 mm |
β = 77.303 (4)° |
Siemens SMART 1000 CCD diffractometer | 3041 independent reflections |
Absorption correction: gaussian [GAUSSIAN (Coppens et al., 1965) and XPREP (Siemens, 1995)] | 2845 reflections with I > 2σ(I) |
Tmin = 0.838, Tmax = 0.887 | Rint = 0.028 |
6481 measured reflections |
R[F2 > 2σ(F2)] = 0.030 | 0 restraints |
wR(F2) = 0.077 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.39 e Å−3 |
3041 reflections | Δρmin = −0.31 e Å−3 |
172 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.13871 (6) | 0.53475 (3) | −0.23138 (3) | 0.03051 (10) | |
Cl2 | −0.36576 (6) | 0.31732 (4) | 0.63832 (3) | 0.03694 (11) | |
N1 | 0.21497 (17) | 0.04929 (10) | 0.13464 (10) | 0.0225 (2) | |
N2 | 0.43312 (17) | 0.15300 (11) | 0.24498 (10) | 0.0237 (2) | |
C1 | 0.19385 (19) | 0.16949 (12) | 0.05035 (11) | 0.0202 (2) | |
C2 | 0.0451 (2) | 0.18494 (12) | −0.03192 (12) | 0.0223 (2) | |
H2 | −0.0435 | 0.1174 | −0.0287 | 0.027* | |
C3 | 0.0246 (2) | 0.29694 (12) | −0.11795 (12) | 0.0235 (2) | |
H3 | −0.0790 | 0.3076 | −0.1723 | 0.028* | |
C4 | 0.1586 (2) | 0.39335 (12) | −0.12326 (11) | 0.0231 (2) | |
C5 | 0.3063 (2) | 0.38015 (13) | −0.04268 (12) | 0.0244 (2) | |
H5 | 0.3972 | 0.4469 | −0.0483 | 0.029* | |
C6 | 0.32302 (19) | 0.26959 (12) | 0.04676 (11) | 0.0216 (2) | |
C7 | 0.4719 (2) | 0.26153 (14) | 0.14220 (12) | 0.0257 (3) | |
H7A | 0.6272 | 0.2467 | 0.0961 | 0.031* | |
H7B | 0.4461 | 0.3475 | 0.1812 | 0.031* | |
C8 | 0.2378 (2) | 0.18853 (12) | 0.33978 (11) | 0.0210 (2) | |
C9 | 0.2439 (2) | 0.27932 (13) | 0.42655 (12) | 0.0247 (3) | |
H9 | 0.3760 | 0.3145 | 0.4222 | 0.030* | |
C10 | 0.0598 (2) | 0.31846 (13) | 0.51862 (12) | 0.0264 (3) | |
H10 | 0.0639 | 0.3807 | 0.5770 | 0.032* | |
C11 | −0.1310 (2) | 0.26523 (13) | 0.52427 (12) | 0.0253 (3) | |
C12 | −0.1417 (2) | 0.17465 (12) | 0.44002 (12) | 0.0236 (2) | |
H12 | −0.2736 | 0.1387 | 0.4463 | 0.028* | |
C13 | 0.0435 (2) | 0.13667 (11) | 0.34567 (11) | 0.0206 (2) | |
C14 | 0.0297 (2) | 0.04557 (12) | 0.24619 (12) | 0.0227 (2) | |
H14A | 0.0304 | −0.0471 | 0.2865 | 0.027* | |
H14B | −0.1104 | 0.0735 | 0.2163 | 0.027* | |
C15 | 0.4179 (2) | 0.03436 (13) | 0.18434 (13) | 0.0266 (3) | |
H15A | 0.4225 | −0.0444 | 0.2482 | 0.032* | |
H15B | 0.5462 | 0.0184 | 0.1127 | 0.032* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.04063 (19) | 0.02569 (16) | 0.02488 (16) | −0.00416 (13) | −0.00813 (13) | 0.00082 (12) |
Cl2 | 0.03147 (19) | 0.0498 (2) | 0.02675 (17) | 0.00243 (15) | −0.00157 (13) | −0.01223 (14) |
N1 | 0.0245 (5) | 0.0207 (5) | 0.0233 (5) | −0.0005 (4) | −0.0072 (4) | −0.0045 (4) |
N2 | 0.0211 (5) | 0.0275 (5) | 0.0236 (5) | −0.0012 (4) | −0.0071 (4) | −0.0048 (4) |
C1 | 0.0206 (6) | 0.0204 (5) | 0.0190 (5) | −0.0002 (4) | −0.0023 (4) | −0.0065 (4) |
C2 | 0.0230 (6) | 0.0226 (6) | 0.0226 (6) | −0.0032 (4) | −0.0047 (4) | −0.0075 (4) |
C3 | 0.0236 (6) | 0.0270 (6) | 0.0209 (6) | −0.0010 (5) | −0.0062 (5) | −0.0064 (5) |
C4 | 0.0274 (6) | 0.0223 (6) | 0.0180 (5) | −0.0013 (5) | −0.0027 (4) | −0.0029 (4) |
C5 | 0.0255 (6) | 0.0268 (6) | 0.0222 (6) | −0.0080 (5) | −0.0027 (5) | −0.0046 (5) |
C6 | 0.0185 (5) | 0.0270 (6) | 0.0198 (5) | −0.0032 (4) | −0.0023 (4) | −0.0065 (4) |
C7 | 0.0213 (6) | 0.0340 (7) | 0.0236 (6) | −0.0078 (5) | −0.0051 (5) | −0.0029 (5) |
C8 | 0.0222 (6) | 0.0218 (5) | 0.0198 (5) | −0.0011 (4) | −0.0079 (4) | −0.0007 (4) |
C9 | 0.0278 (6) | 0.0259 (6) | 0.0232 (6) | −0.0051 (5) | −0.0106 (5) | −0.0017 (5) |
C10 | 0.0350 (7) | 0.0252 (6) | 0.0207 (6) | −0.0014 (5) | −0.0101 (5) | −0.0045 (5) |
C11 | 0.0278 (6) | 0.0278 (6) | 0.0179 (5) | 0.0018 (5) | −0.0044 (5) | −0.0016 (5) |
C12 | 0.0242 (6) | 0.0250 (6) | 0.0216 (6) | −0.0041 (5) | −0.0066 (5) | 0.0016 (5) |
C13 | 0.0246 (6) | 0.0187 (5) | 0.0194 (5) | −0.0024 (4) | −0.0079 (4) | −0.0001 (4) |
C14 | 0.0266 (6) | 0.0205 (5) | 0.0229 (6) | −0.0055 (5) | −0.0072 (5) | −0.0026 (4) |
C15 | 0.0251 (6) | 0.0259 (6) | 0.0291 (6) | 0.0038 (5) | −0.0094 (5) | −0.0072 (5) |
Cl1—C4 | 1.7411 (13) | C6—C7 | 1.5170 (17) |
Cl2—C11 | 1.7477 (13) | C7—H7A | 0.9900 |
N1—C1 | 1.4366 (16) | C7—H7B | 0.9900 |
N1—C15 | 1.4678 (17) | C8—C9 | 1.3981 (17) |
N1—C14 | 1.4754 (16) | C8—C13 | 1.3997 (17) |
N2—C8 | 1.4362 (16) | C9—C10 | 1.3821 (19) |
N2—C15 | 1.4663 (16) | C9—H9 | 0.9500 |
N2—C7 | 1.4736 (17) | C10—C11 | 1.388 (2) |
C1—C2 | 1.3983 (17) | C10—H10 | 0.9500 |
C1—C6 | 1.4014 (17) | C11—C12 | 1.3847 (18) |
C2—C3 | 1.3841 (18) | C12—C13 | 1.3975 (17) |
C2—H2 | 0.9500 | C12—H12 | 0.9500 |
C3—C4 | 1.3888 (18) | C13—C14 | 1.5191 (16) |
C3—H3 | 0.9500 | C14—H14A | 0.9900 |
C4—C5 | 1.3813 (18) | C14—H14B | 0.9900 |
C5—C6 | 1.3930 (18) | C15—H15A | 0.9900 |
C5—H5 | 0.9500 | C15—H15B | 0.9900 |
C1—N1—C15 | 110.57 (10) | C9—C8—C13 | 119.88 (11) |
C1—N1—C14 | 112.99 (9) | C9—C8—N2 | 118.21 (11) |
C15—N1—C14 | 107.69 (10) | C13—C8—N2 | 121.90 (11) |
C8—N2—C15 | 111.00 (10) | C10—C9—C8 | 120.66 (12) |
C8—N2—C7 | 111.85 (10) | C10—C9—H9 | 119.7 |
C15—N2—C7 | 107.72 (10) | C8—C9—H9 | 119.7 |
C2—C1—C6 | 119.56 (11) | C9—C10—C11 | 118.88 (12) |
C2—C1—N1 | 119.08 (11) | C9—C10—H10 | 120.6 |
C6—C1—N1 | 121.34 (11) | C11—C10—H10 | 120.6 |
C3—C2—C1 | 121.12 (11) | C12—C11—C10 | 121.75 (12) |
C3—C2—H2 | 119.4 | C12—C11—Cl2 | 119.29 (10) |
C1—C2—H2 | 119.4 | C10—C11—Cl2 | 118.95 (10) |
C2—C3—C4 | 118.68 (12) | C11—C12—C13 | 119.36 (12) |
C2—C3—H3 | 120.7 | C11—C12—H12 | 120.3 |
C4—C3—H3 | 120.7 | C13—C12—H12 | 120.3 |
C5—C4—C3 | 121.10 (12) | C12—C13—C8 | 119.47 (11) |
C5—C4—Cl1 | 119.04 (10) | C12—C13—C14 | 120.04 (11) |
C3—C4—Cl1 | 119.85 (10) | C8—C13—C14 | 120.41 (11) |
C4—C5—C6 | 120.48 (12) | N1—C14—C13 | 111.62 (10) |
C4—C5—H5 | 119.8 | N1—C14—H14A | 109.3 |
C6—C5—H5 | 119.8 | C13—C14—H14A | 109.3 |
C5—C6—C1 | 118.99 (11) | N1—C14—H14B | 109.3 |
C5—C6—C7 | 120.05 (11) | C13—C14—H14B | 109.3 |
C1—C6—C7 | 120.90 (11) | H14A—C14—H14B | 108.0 |
N2—C7—C6 | 111.91 (10) | N2—C15—N1 | 111.81 (10) |
N2—C7—H7A | 109.2 | N2—C15—H15A | 109.3 |
C6—C7—H7A | 109.2 | N1—C15—H15A | 109.3 |
N2—C7—H7B | 109.2 | N2—C15—H15B | 109.3 |
C6—C7—H7B | 109.2 | N1—C15—H15B | 109.3 |
H7A—C7—H7B | 107.9 | H15A—C15—H15B | 107.9 |
C15—N1—C1—C2 | 163.66 (10) | C15—N2—C8—C13 | −15.32 (15) |
C14—N1—C1—C2 | −75.55 (13) | C7—N2—C8—C13 | 105.03 (13) |
C15—N1—C1—C6 | −14.71 (15) | C13—C8—C9—C10 | 0.13 (18) |
C14—N1—C1—C6 | 106.08 (12) | N2—C8—C9—C10 | 179.10 (11) |
C6—C1—C2—C3 | 0.66 (17) | C8—C9—C10—C11 | 0.54 (19) |
N1—C1—C2—C3 | −177.73 (10) | C9—C10—C11—C12 | −0.22 (19) |
C1—C2—C3—C4 | 1.33 (18) | C9—C10—C11—Cl2 | −178.62 (10) |
C2—C3—C4—C5 | −1.45 (18) | C10—C11—C12—C13 | −0.75 (19) |
C2—C3—C4—Cl1 | 179.45 (9) | Cl2—C11—C12—C13 | 177.65 (9) |
C3—C4—C5—C6 | −0.44 (19) | C11—C12—C13—C8 | 1.40 (18) |
Cl1—C4—C5—C6 | 178.66 (9) | C11—C12—C13—C14 | −175.40 (11) |
C4—C5—C6—C1 | 2.44 (18) | C9—C8—C13—C12 | −1.10 (17) |
C4—C5—C6—C7 | −174.95 (11) | N2—C8—C13—C12 | 179.97 (11) |
C2—C1—C6—C5 | −2.54 (17) | C9—C8—C13—C14 | 175.69 (11) |
N1—C1—C6—C5 | 175.82 (10) | N2—C8—C13—C14 | −3.24 (17) |
C2—C1—C6—C7 | 174.83 (11) | C1—N1—C14—C13 | −74.78 (13) |
N1—C1—C6—C7 | −6.81 (17) | C15—N1—C14—C13 | 47.63 (13) |
C8—N2—C7—C6 | −77.31 (13) | C12—C13—C14—N1 | 162.98 (10) |
C15—N2—C7—C6 | 44.93 (13) | C8—C13—C14—N1 | −13.79 (15) |
C5—C6—C7—N2 | 168.04 (11) | C8—N2—C15—N1 | 52.32 (14) |
C1—C6—C7—N2 | −9.29 (16) | C7—N2—C15—N1 | −70.44 (13) |
C15—N2—C8—C9 | 165.73 (11) | C1—N1—C15—N2 | 53.76 (14) |
C7—N2—C8—C9 | −73.93 (14) | C14—N1—C15—N2 | −70.13 (13) |
Experimental details
Crystal data | |
Chemical formula | C15H12Cl2N2 |
Mr | 291.17 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 150 |
a, b, c (Å) | 6.3017 (18), 10.203 (3), 10.685 (3) |
α, β, γ (°) | 83.059 (5), 77.303 (4), 80.297 (5) |
V (Å3) | 658.1 (3) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.48 |
Crystal size (mm) | 0.40 × 0.30 × 0.25 |
Data collection | |
Diffractometer | Siemens SMART 1000 CCD |
Absorption correction | Gaussian [GAUSSIAN (Coppens et al., 1965) and XPREP (Siemens, 1995)] |
Tmin, Tmax | 0.838, 0.887 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6481, 3041, 2845 |
Rint | 0.028 |
(sin θ/λ)max (Å−1) | 0.667 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.030, 0.077, 1.07 |
No. of reflections | 3041 |
No. of parameters | 172 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.39, −0.31 |
Computer programs: SMART (Siemens, 1995), SAINT (Siemens, 1995), SAINT and XPREP (Siemens, 1995), SIR97 (Altomare et al., 1999), SHELXL97 (Sheldrick, 1997), TEXSAN for Windows (Molecular Structure Corporation, 1998), Xtal3.6 (Hall et al., 1999), ORTEPII (Johnson, 1976) and WinGX (Farrugia, 1999), WinGX.
Tröger's base was the first chiral compound to be successfully resolved whose optical activity was the result of stereogenic tertiary nitrogen centres. This resolution was achieved through what may have been the first example of a chiral separation using chromatography with a chiral stationary phase (Prelog & Wieland, 1944). An important feature of this family of molecules is the
diazocine bridge that imparts a twist within the compounds such that the two aryl rings are offset with respect to one another. The angle made by the intersection of two least squares planes (as defined by the aryl rings) is referred to as the dihedral angle. This dihedral angle has been measured across a range of compounds to lie between 82° (Solano et al., 2005) and 108.44 (4)° (Faroughi et al., 2006b) for simple dibenzo Tröger's base analogues, and is dependent upon the nature of the substituents on the aromatic rings. We have previously reported that the dihedral angle in 2,8-dibromo Tröger's base is 94.45 (4)° (Faroughi et al., 2006a) and now report that the title compound, (I), has a very similar structure.
We were interested in preparing a range of dihalo Tröger's base analogues as precursors for supramolecular recognition elements. The synthesis of (I) in racemic form was achieved by reacting 4-chloroaniline with paraformaldehyde in trifluoroacetic acid (TFA).
In the molecule of the title compound, (I), the bond lengths and angles are within normal ranges (Allen et al., 1987). Rings B (N1/N2/C1/C6/C7/C15) and C (N1/N2/C8/C13—C15) are not planar, having total puckering amplitudes, QT, of 1.376 (3) and 0.741 (3) Å, respectively and twist conformations φ = -115.97 (3)°, θ = 108.20 (2)° and φ = -31.28 (3)°, θ = 48.67 (3)° (Cremer & Pople, 1975). Rings A (C1—C6) and D (C8—C13) are, of course, planar and the dihedral angle between them is 95.64 (3)°.