Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270105015714/gd1390sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270105015714/gd1390Isup2.hkl |
CCDC reference: 278575
Equimolar quantities of thiamine chloride hydrochloride and sodium tetraphenylborate (purchased from Aldrich) were dissolved in water and acetone, respectively. The solutions were mixed, and the mixture was set aside to afford crystals of (I) suitable for single-crystal X-ray diffraction. Analysis found: C 72.2, H 6.0, N 9.1%; C36H39BN4O2S requires: C 71.8, H 6.5, N 9.3%.
H atoms of the hydroxy group of the C5-hydroxyethyl side chain and the water molecule were located from difference Fourier maps and were fixed in the refinements. All other H atoms were treated as riding atoms, with C—H distances of 0.98 (CH3), 0.99 (CH2) or 0.95 Å (CH), and N—H distances of 0.88 Å, All H atoms were assigned isotropic displacement parameters the same as the Ueq value of the non-H atoms to which they are bonded.
Data collection: SMART (Bruker, 1998); cell refinement: SMART; data reduction: SAINT (Bruker, 2003); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 1997); software used to prepare material for publication: SHELXTL.
C24H20B−·C12H17N4OS+·H2O | F(000) = 1280 |
Mr = 602.58 | Dx = 1.259 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 5012 reflections |
a = 14.6464 (6) Å | θ = 2.4–26.0° |
b = 10.6667 (4) Å | µ = 0.14 mm−1 |
c = 20.4459 (8) Å | T = 187 K |
β = 95.523 (1)° | Tablet, colourless |
V = 3179.4 (2) Å3 | 0.30 × 0.24 × 0.12 mm |
Z = 4 |
Bruker SMART APEX CCD diffractometer | 6251 independent reflections |
Radiation source: fine-focus sealed tube | 5011 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.026 |
ϕ and ω scans | θmax = 26.0°, θmin = 1.4° |
Absorption correction: multi-scan (SAINT; Bruker, 2003) | h = −17→18 |
Tmin = 0.962, Tmax = 0.986 | k = −13→13 |
17468 measured reflections | l = −19→25 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.123 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.061P)2 + 1.2737P] where P = (Fo2 + 2Fc2)/3 |
6251 reflections | (Δ/σ)max = 0.004 |
399 parameters | Δρmax = 0.34 e Å−3 |
0 restraints | Δρmin = −0.27 e Å−3 |
C24H20B−·C12H17N4OS+·H2O | V = 3179.4 (2) Å3 |
Mr = 602.58 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 14.6464 (6) Å | µ = 0.14 mm−1 |
b = 10.6667 (4) Å | T = 187 K |
c = 20.4459 (8) Å | 0.30 × 0.24 × 0.12 mm |
β = 95.523 (1)° |
Bruker SMART APEX CCD diffractometer | 6251 independent reflections |
Absorption correction: multi-scan (SAINT; Bruker, 2003) | 5011 reflections with I > 2σ(I) |
Tmin = 0.962, Tmax = 0.986 | Rint = 0.026 |
17468 measured reflections |
R[F2 > 2σ(F2)] = 0.048 | 0 restraints |
wR(F2) = 0.123 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.34 e Å−3 |
6251 reflections | Δρmin = −0.27 e Å−3 |
399 parameters |
x | y | z | Uiso*/Ueq | ||
S1 | 0.29451 (3) | −0.03968 (5) | 0.46066 (2) | 0.03145 (14) | |
N1 | 0.22862 (10) | 0.17438 (14) | 0.46865 (7) | 0.0249 (3) | |
N2 | 0.32011 (11) | 0.42606 (15) | 0.65068 (8) | 0.0332 (4) | |
N3 | 0.42585 (11) | 0.46379 (15) | 0.57161 (7) | 0.0310 (4) | |
N4 | 0.40371 (11) | 0.38414 (16) | 0.46710 (7) | 0.0333 (4) | |
H4A | 0.4582 | 0.4134 | 0.4604 | 0.033* | |
H4B | 0.3707 | 0.3439 | 0.4355 | 0.033* | |
O1 | 0.26526 (11) | 0.08000 (13) | 0.27484 (6) | 0.0415 (4) | |
H1 | 0.2851 | 0.0862 | 0.2353 | 0.042* | |
O2 | 0.31515 (11) | 0.29804 (14) | 0.34436 (7) | 0.0445 (4) | |
H2A | 0.3027 | 0.2311 | 0.3214 | 0.044* | |
H2B | 0.3051 | 0.3636 | 0.3183 | 0.044* | |
C1 | 0.28942 (12) | 0.09837 (17) | 0.49929 (9) | 0.0279 (4) | |
H1A | 0.3261 | 0.1193 | 0.5387 | 0.028* | |
C2 | 0.18078 (12) | 0.12337 (17) | 0.41241 (9) | 0.0268 (4) | |
C3 | 0.21091 (12) | 0.00691 (17) | 0.40012 (9) | 0.0272 (4) | |
C4 | 0.10609 (14) | 0.1953 (2) | 0.37483 (10) | 0.0373 (5) | |
H4C | 0.0776 | 0.1432 | 0.3390 | 0.037* | |
H4D | 0.1317 | 0.2711 | 0.3566 | 0.037* | |
H4E | 0.0599 | 0.2189 | 0.4042 | 0.037* | |
C5 | 0.19123 (13) | −0.07100 (18) | 0.33918 (9) | 0.0316 (4) | |
H5A | 0.1304 | −0.0483 | 0.3170 | 0.032* | |
H5B | 0.1899 | −0.1608 | 0.3512 | 0.032* | |
C6 | 0.26470 (14) | −0.04902 (17) | 0.29274 (9) | 0.0320 (4) | |
H6A | 0.3255 | −0.0731 | 0.3145 | 0.032* | |
H6B | 0.2520 | −0.1014 | 0.2529 | 0.032* | |
C7 | 0.21286 (13) | 0.30585 (17) | 0.48943 (9) | 0.0292 (4) | |
H7A | 0.1524 | 0.3104 | 0.5071 | 0.029* | |
H7B | 0.2103 | 0.3606 | 0.4502 | 0.029* | |
C8 | 0.39803 (13) | 0.47419 (18) | 0.63163 (9) | 0.0318 (4) | |
C9 | 0.37099 (13) | 0.40084 (17) | 0.52538 (9) | 0.0275 (4) | |
C10 | 0.28416 (12) | 0.35582 (16) | 0.54005 (9) | 0.0269 (4) | |
C11 | 0.26413 (13) | 0.37049 (18) | 0.60373 (9) | 0.0315 (4) | |
H11 | 0.2071 | 0.3393 | 0.6153 | 0.031* | |
C12 | 0.45790 (15) | 0.5448 (2) | 0.68217 (10) | 0.0423 (5) | |
H12A | 0.4254 | 0.6194 | 0.6955 | 0.042* | |
H12B | 0.5144 | 0.5702 | 0.6637 | 0.042* | |
H12C | 0.4733 | 0.4910 | 0.7205 | 0.042* | |
B | 0.21305 (14) | 0.57783 (19) | 0.18076 (10) | 0.0265 (4) | |
C13 | 0.23119 (12) | 0.58899 (16) | 0.26148 (9) | 0.0269 (4) | |
C14 | 0.16434 (14) | 0.56452 (17) | 0.30437 (9) | 0.0323 (4) | |
H14 | 0.1049 | 0.5397 | 0.2863 | 0.032* | |
C15 | 0.18122 (15) | 0.57506 (18) | 0.37231 (10) | 0.0369 (5) | |
H15 | 0.1340 | 0.5558 | 0.3994 | 0.037* | |
C16 | 0.26602 (15) | 0.61321 (19) | 0.40064 (10) | 0.0392 (5) | |
H16 | 0.2777 | 0.6206 | 0.4470 | 0.039* | |
C17 | 0.33357 (15) | 0.64046 (19) | 0.36008 (10) | 0.0381 (5) | |
H17 | 0.3922 | 0.6678 | 0.3786 | 0.038* | |
C18 | 0.31616 (13) | 0.62805 (18) | 0.29234 (9) | 0.0317 (4) | |
H18 | 0.3640 | 0.6469 | 0.2657 | 0.032* | |
C19 | 0.13886 (12) | 0.46577 (17) | 0.15669 (9) | 0.0275 (4) | |
C20 | 0.12048 (13) | 0.36083 (18) | 0.19427 (10) | 0.0344 (4) | |
H20 | 0.1512 | 0.3528 | 0.2372 | 0.034* | |
C21 | 0.05888 (15) | 0.2676 (2) | 0.17128 (12) | 0.0443 (5) | |
H21 | 0.0474 | 0.1987 | 0.1988 | 0.044* | |
C22 | 0.01474 (14) | 0.2749 (2) | 0.10896 (13) | 0.0479 (6) | |
H22 | −0.0278 | 0.2119 | 0.0933 | 0.048* | |
C23 | 0.03284 (15) | 0.3744 (2) | 0.06949 (12) | 0.0461 (6) | |
H23 | 0.0039 | 0.3795 | 0.0260 | 0.046* | |
C24 | 0.09336 (14) | 0.46749 (19) | 0.09320 (10) | 0.0368 (5) | |
H24 | 0.1045 | 0.5356 | 0.0651 | 0.037* | |
C25 | 0.31209 (12) | 0.53770 (18) | 0.15468 (9) | 0.0281 (4) | |
C26 | 0.34524 (13) | 0.41625 (19) | 0.16709 (9) | 0.0314 (4) | |
H26 | 0.3084 | 0.3592 | 0.1887 | 0.031* | |
C27 | 0.42946 (14) | 0.3748 (2) | 0.14944 (10) | 0.0395 (5) | |
H27 | 0.4495 | 0.2917 | 0.1596 | 0.039* | |
C28 | 0.48353 (14) | 0.4547 (3) | 0.11717 (11) | 0.0490 (6) | |
H28 | 0.5401 | 0.4262 | 0.1034 | 0.049* | |
C29 | 0.45531 (15) | 0.5757 (3) | 0.10489 (12) | 0.0529 (6) | |
H29 | 0.4931 | 0.6316 | 0.0834 | 0.053* | |
C30 | 0.37072 (14) | 0.6173 (2) | 0.12388 (10) | 0.0396 (5) | |
H30 | 0.3528 | 0.7019 | 0.1156 | 0.040* | |
C31 | 0.16942 (12) | 0.71057 (17) | 0.15058 (9) | 0.0272 (4) | |
C32 | 0.11504 (12) | 0.78701 (18) | 0.18651 (9) | 0.0305 (4) | |
H32 | 0.1075 | 0.7645 | 0.2306 | 0.031* | |
C33 | 0.07152 (13) | 0.89418 (19) | 0.16092 (11) | 0.0383 (5) | |
H33 | 0.0362 | 0.9436 | 0.1878 | 0.038* | |
C34 | 0.07905 (15) | 0.92939 (19) | 0.09708 (11) | 0.0412 (5) | |
H34 | 0.0488 | 1.0023 | 0.0793 | 0.041* | |
C35 | 0.13144 (16) | 0.8567 (2) | 0.05939 (11) | 0.0422 (5) | |
H35 | 0.1373 | 0.8792 | 0.0150 | 0.042* | |
C36 | 0.17565 (15) | 0.75087 (19) | 0.08582 (10) | 0.0369 (5) | |
H36 | 0.2120 | 0.7033 | 0.0588 | 0.037* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0368 (3) | 0.0313 (3) | 0.0259 (3) | 0.0061 (2) | 0.00114 (19) | 0.00246 (19) |
N1 | 0.0238 (8) | 0.0280 (8) | 0.0229 (8) | −0.0004 (6) | 0.0031 (6) | 0.0024 (6) |
N2 | 0.0375 (9) | 0.0383 (9) | 0.0246 (8) | 0.0012 (7) | 0.0072 (7) | −0.0010 (7) |
N3 | 0.0317 (8) | 0.0363 (9) | 0.0251 (8) | −0.0020 (7) | 0.0025 (6) | −0.0020 (7) |
N4 | 0.0319 (9) | 0.0438 (10) | 0.0247 (8) | −0.0076 (7) | 0.0053 (7) | −0.0046 (7) |
O1 | 0.0673 (10) | 0.0334 (8) | 0.0261 (7) | −0.0092 (7) | 0.0162 (7) | −0.0018 (6) |
O2 | 0.0633 (10) | 0.0375 (8) | 0.0314 (8) | −0.0088 (7) | −0.0022 (7) | −0.0013 (6) |
C1 | 0.0290 (10) | 0.0323 (10) | 0.0222 (9) | 0.0012 (8) | 0.0005 (7) | 0.0026 (8) |
C2 | 0.0252 (9) | 0.0329 (10) | 0.0224 (9) | −0.0038 (8) | 0.0021 (7) | 0.0031 (7) |
C3 | 0.0274 (9) | 0.0305 (10) | 0.0237 (9) | −0.0039 (8) | 0.0029 (7) | 0.0047 (8) |
C4 | 0.0330 (11) | 0.0405 (12) | 0.0366 (11) | 0.0025 (9) | −0.0062 (9) | −0.0001 (9) |
C5 | 0.0371 (11) | 0.0306 (10) | 0.0265 (10) | −0.0049 (8) | 0.0006 (8) | −0.0016 (8) |
C6 | 0.0376 (11) | 0.0314 (10) | 0.0269 (10) | −0.0035 (8) | 0.0020 (8) | −0.0038 (8) |
C7 | 0.0289 (10) | 0.0283 (9) | 0.0305 (10) | 0.0023 (8) | 0.0026 (8) | 0.0005 (8) |
C8 | 0.0359 (11) | 0.0335 (10) | 0.0261 (10) | 0.0041 (8) | 0.0035 (8) | −0.0012 (8) |
C9 | 0.0312 (10) | 0.0270 (9) | 0.0242 (9) | 0.0017 (8) | 0.0025 (7) | 0.0017 (7) |
C10 | 0.0288 (9) | 0.0247 (9) | 0.0273 (10) | 0.0022 (7) | 0.0033 (7) | 0.0003 (7) |
C11 | 0.0318 (10) | 0.0324 (10) | 0.0310 (10) | 0.0007 (8) | 0.0070 (8) | 0.0018 (8) |
C12 | 0.0427 (12) | 0.0535 (14) | 0.0303 (11) | −0.0042 (10) | 0.0016 (9) | −0.0094 (10) |
B | 0.0274 (10) | 0.0274 (10) | 0.0252 (10) | −0.0017 (8) | 0.0050 (8) | −0.0030 (8) |
C13 | 0.0321 (10) | 0.0224 (9) | 0.0264 (10) | 0.0020 (7) | 0.0044 (8) | −0.0002 (7) |
C14 | 0.0349 (10) | 0.0292 (10) | 0.0337 (11) | 0.0030 (8) | 0.0085 (8) | −0.0011 (8) |
C15 | 0.0514 (13) | 0.0293 (10) | 0.0324 (11) | 0.0086 (9) | 0.0169 (9) | 0.0045 (8) |
C16 | 0.0554 (14) | 0.0370 (11) | 0.0255 (10) | 0.0118 (10) | 0.0051 (9) | 0.0010 (9) |
C17 | 0.0410 (12) | 0.0389 (11) | 0.0330 (11) | 0.0049 (9) | −0.0039 (9) | −0.0036 (9) |
C18 | 0.0337 (10) | 0.0321 (10) | 0.0296 (10) | 0.0006 (8) | 0.0047 (8) | −0.0008 (8) |
C19 | 0.0240 (9) | 0.0264 (9) | 0.0327 (10) | 0.0026 (7) | 0.0056 (7) | −0.0047 (8) |
C20 | 0.0337 (11) | 0.0313 (10) | 0.0392 (11) | −0.0019 (8) | 0.0085 (9) | −0.0029 (9) |
C21 | 0.0415 (12) | 0.0314 (11) | 0.0628 (15) | −0.0079 (9) | 0.0202 (11) | −0.0050 (10) |
C22 | 0.0291 (11) | 0.0364 (12) | 0.0781 (18) | −0.0066 (9) | 0.0040 (11) | −0.0206 (12) |
C23 | 0.0375 (12) | 0.0428 (13) | 0.0547 (14) | 0.0026 (10) | −0.0116 (10) | −0.0135 (11) |
C24 | 0.0376 (11) | 0.0315 (10) | 0.0400 (12) | 0.0005 (8) | −0.0027 (9) | −0.0029 (9) |
C25 | 0.0269 (9) | 0.0362 (10) | 0.0210 (9) | −0.0051 (8) | 0.0013 (7) | −0.0082 (8) |
C26 | 0.0286 (10) | 0.0408 (11) | 0.0245 (9) | −0.0011 (8) | 0.0017 (7) | −0.0059 (8) |
C27 | 0.0314 (11) | 0.0530 (13) | 0.0329 (11) | 0.0076 (10) | −0.0022 (9) | −0.0090 (10) |
C28 | 0.0254 (11) | 0.0765 (18) | 0.0454 (13) | 0.0046 (11) | 0.0055 (9) | −0.0097 (12) |
C29 | 0.0340 (12) | 0.0760 (18) | 0.0501 (14) | −0.0190 (12) | 0.0115 (10) | −0.0013 (13) |
C30 | 0.0366 (11) | 0.0443 (12) | 0.0386 (12) | −0.0112 (9) | 0.0065 (9) | −0.0037 (10) |
C31 | 0.0280 (9) | 0.0251 (9) | 0.0285 (10) | −0.0047 (7) | 0.0028 (7) | −0.0051 (8) |
C32 | 0.0282 (10) | 0.0333 (10) | 0.0298 (10) | −0.0030 (8) | 0.0010 (8) | −0.0059 (8) |
C33 | 0.0306 (11) | 0.0344 (11) | 0.0501 (13) | 0.0020 (9) | 0.0044 (9) | −0.0089 (10) |
C34 | 0.0406 (12) | 0.0270 (10) | 0.0549 (14) | 0.0006 (9) | −0.0018 (10) | 0.0054 (10) |
C35 | 0.0548 (14) | 0.0371 (11) | 0.0349 (12) | −0.0036 (10) | 0.0048 (10) | 0.0089 (9) |
C36 | 0.0472 (12) | 0.0315 (10) | 0.0332 (11) | 0.0021 (9) | 0.0100 (9) | −0.0019 (9) |
S1—C1 | 1.6760 (19) | C13—C18 | 1.403 (3) |
S1—C3 | 1.7282 (18) | C14—C15 | 1.392 (3) |
N1—C1 | 1.317 (2) | C14—H14 | 0.95 |
N1—C2 | 1.398 (2) | C15—C16 | 1.380 (3) |
N1—C7 | 1.490 (2) | C15—H15 | 0.95 |
N2—C11 | 1.339 (2) | C16—C17 | 1.382 (3) |
N2—C8 | 1.343 (2) | C16—H16 | 0.95 |
N3—C8 | 1.334 (2) | C17—C18 | 1.390 (3) |
N3—C9 | 1.358 (2) | C17—H17 | 0.95 |
N4—C9 | 1.338 (2) | C18—H18 | 0.95 |
N4—H4A | 0.88 | C19—C20 | 1.399 (3) |
N4—H4B | 0.88 | C19—C24 | 1.401 (3) |
O1—C6 | 1.424 (2) | C20—C21 | 1.394 (3) |
O1—H1 | 0.89 | C20—H20 | 0.95 |
O2—H2A | 0.86 | C21—C22 | 1.374 (3) |
O2—H2B | 0.88 | C21—H21 | 0.95 |
C1—H1A | 0.95 | C22—C23 | 1.375 (3) |
C2—C3 | 1.350 (3) | C22—H22 | 0.95 |
C2—C4 | 1.488 (3) | C23—C24 | 1.387 (3) |
C3—C5 | 1.502 (3) | C23—H23 | 0.95 |
C4—H4C | 0.98 | C24—H24 | 0.95 |
C4—H4D | 0.98 | C25—C26 | 1.398 (3) |
C4—H4E | 0.98 | C25—C30 | 1.400 (3) |
C5—C6 | 1.520 (3) | C26—C27 | 1.390 (3) |
C5—H5A | 0.99 | C26—H26 | 0.95 |
C5—H5B | 0.99 | C27—C28 | 1.375 (3) |
C6—H6A | 0.99 | C27—H27 | 0.95 |
C6—H6B | 0.99 | C28—C29 | 1.371 (4) |
C7—C10 | 1.496 (3) | C28—H28 | 0.95 |
C7—H7A | 0.99 | C29—C30 | 1.406 (3) |
C7—H7B | 0.99 | C29—H29 | 0.95 |
C8—C12 | 1.493 (3) | C30—H30 | 0.95 |
C9—C10 | 1.418 (3) | C31—C32 | 1.397 (3) |
C10—C11 | 1.371 (3) | C31—C36 | 1.403 (3) |
C11—H11 | 0.95 | C32—C33 | 1.387 (3) |
C12—H12A | 0.98 | C32—H32 | 0.95 |
C12—H12B | 0.98 | C33—C34 | 1.373 (3) |
C12—H12C | 0.98 | C33—H33 | 0.95 |
B—C31 | 1.649 (3) | C34—C35 | 1.378 (3) |
B—C25 | 1.649 (3) | C34—H34 | 0.95 |
B—C13 | 1.651 (3) | C35—C36 | 1.385 (3) |
B—C19 | 1.658 (3) | C35—H35 | 0.95 |
C13—C14 | 1.400 (3) | C36—H36 | 0.95 |
C1—S1—C3 | 91.40 (9) | C18—C13—B | 121.43 (16) |
C1—N1—C2 | 114.46 (15) | C15—C14—C13 | 122.84 (19) |
C1—N1—C7 | 124.04 (15) | C15—C14—H14 | 119 |
C2—N1—C7 | 121.47 (15) | C13—C14—H14 | 119 |
C11—N2—C8 | 116.10 (16) | C16—C15—C14 | 120.59 (19) |
C8—N3—C9 | 117.94 (16) | C16—C15—H15 | 120 |
C9—N4—H4A | 120 | C14—C15—H15 | 120 |
C9—N4—H4B | 120 | C15—C16—C17 | 118.52 (19) |
H4A—N4—H4B | 120 | C15—C16—H16 | 121 |
C6—O1—H1 | 108 | C17—C16—H16 | 121 |
H2A—O2—H2B | 108 | C16—C17—C18 | 120.30 (19) |
N1—C1—S1 | 112.04 (14) | C16—C17—H17 | 120 |
N1—C1—H1A | 124 | C18—C17—H17 | 120 |
S1—C1—H1A | 124 | C17—C18—C13 | 123.09 (18) |
C3—C2—N1 | 111.37 (16) | C17—C18—H18 | 118 |
C3—C2—C4 | 127.99 (17) | C13—C18—H18 | 118 |
N1—C2—C4 | 120.63 (16) | C20—C19—C24 | 114.83 (18) |
C2—C3—C5 | 128.56 (17) | C20—C19—B | 124.70 (17) |
C2—C3—S1 | 110.67 (14) | C24—C19—B | 120.36 (17) |
C5—C3—S1 | 120.07 (14) | C21—C20—C19 | 122.6 (2) |
C2—C4—H4C | 109 | C21—C20—H20 | 119 |
C2—C4—H4D | 109 | C19—C20—H20 | 119 |
H4C—C4—H4D | 109 | C22—C21—C20 | 120.2 (2) |
C2—C4—H4E | 109 | C22—C21—H21 | 120 |
H4C—C4—H4E | 109 | C20—C21—H21 | 120 |
H4D—C4—H4E | 109 | C23—C22—C21 | 119.2 (2) |
C3—C5—C6 | 109.99 (15) | C23—C22—H22 | 120 |
C3—C5—H5A | 110 | C21—C22—H22 | 120 |
C6—C5—H5A | 110 | C22—C23—C24 | 120.0 (2) |
C3—C5—H5B | 110 | C22—C23—H23 | 120 |
C6—C5—H5B | 110 | C24—C23—H23 | 120 |
H5A—C5—H5B | 108 | C23—C24—C19 | 123.1 (2) |
O1—C6—C5 | 109.36 (15) | C23—C24—H24 | 118 |
O1—C6—H6A | 110 | C19—C24—H24 | 118 |
C5—C6—H6A | 110 | C26—C25—C30 | 115.26 (18) |
O1—C6—H6B | 110 | C26—C25—B | 118.86 (16) |
C5—C6—H6B | 110 | C30—C25—B | 125.77 (18) |
H6A—C6—H6B | 108 | C27—C26—C25 | 123.29 (19) |
N1—C7—C10 | 114.57 (15) | C27—C26—H26 | 118 |
N1—C7—H7A | 109 | C25—C26—H26 | 118 |
C10—C7—H7A | 109 | C28—C27—C26 | 119.6 (2) |
N1—C7—H7B | 109 | C28—C27—H27 | 120 |
C10—C7—H7B | 109 | C26—C27—H27 | 120 |
H7A—C7—H7B | 108 | C29—C28—C27 | 119.6 (2) |
N3—C8—N2 | 125.33 (18) | C29—C28—H28 | 120 |
N3—C8—C12 | 117.87 (18) | C27—C28—H28 | 120 |
N2—C8—C12 | 116.80 (17) | C28—C29—C30 | 120.4 (2) |
N4—C9—N3 | 116.55 (17) | C28—C29—H29 | 120 |
N4—C9—C10 | 123.26 (17) | C30—C29—H29 | 120 |
N3—C9—C10 | 120.19 (16) | C25—C30—C29 | 121.8 (2) |
C11—C10—C9 | 116.13 (17) | C25—C30—H30 | 119 |
C11—C10—C7 | 119.92 (17) | C29—C30—H30 | 119 |
C9—C10—C7 | 123.70 (16) | C32—C31—C36 | 114.17 (17) |
N2—C11—C10 | 124.00 (18) | C32—C31—B | 121.64 (16) |
N2—C11—H11 | 118 | C36—C31—B | 123.93 (16) |
C10—C11—H11 | 118 | C33—C32—C31 | 123.20 (19) |
C8—C12—H12A | 109 | C33—C32—H32 | 118 |
C8—C12—H12B | 109 | C31—C32—H32 | 118 |
H12A—C12—H12B | 109 | C34—C33—C32 | 120.55 (19) |
C8—C12—H12C | 109 | C34—C33—H33 | 120 |
H12A—C12—H12C | 109 | C32—C33—H33 | 120 |
H12B—C12—H12C | 109 | C33—C34—C35 | 118.54 (19) |
C31—B—C25 | 115.03 (15) | C33—C34—H34 | 121 |
C31—B—C13 | 109.36 (14) | C35—C34—H34 | 121 |
C25—B—C13 | 106.27 (15) | C34—C35—C36 | 120.3 (2) |
C31—B—C19 | 106.78 (15) | C34—C35—H35 | 120 |
C25—B—C19 | 106.77 (14) | C36—C35—H35 | 120 |
C13—B—C19 | 112.75 (15) | C35—C36—C31 | 123.19 (19) |
C14—C13—C18 | 114.65 (17) | C35—C36—H36 | 118 |
C14—C13—B | 123.91 (16) | C31—C36—H36 | 118 |
C2—N1—C1—S1 | 1.42 (19) | C2—N1—C7—C10 | −165.79 (15) |
C7—N1—C1—S1 | −176.39 (13) | C9—N3—C8—N2 | 0.8 (3) |
C3—S1—C1—N1 | 0.11 (14) | C9—N3—C8—C12 | −179.27 (18) |
C1—N1—C2—C3 | −2.7 (2) | C11—N2—C8—N3 | −4.5 (3) |
C7—N1—C2—C3 | 175.18 (15) | C11—N2—C8—C12 | 175.58 (18) |
C1—N1—C2—C4 | 176.40 (17) | C8—N3—C9—N4 | −175.34 (17) |
C7—N1—C2—C4 | −5.7 (2) | C8—N3—C9—C10 | 4.3 (3) |
N1—C2—C3—C5 | −167.66 (17) | N4—C9—C10—C11 | 174.26 (18) |
C4—C2—C3—C5 | 13.3 (3) | N3—C9—C10—C11 | −5.3 (3) |
N1—C2—C3—S1 | 2.66 (19) | N4—C9—C10—C7 | −11.5 (3) |
C4—C2—C3—S1 | −176.35 (16) | N3—C9—C10—C7 | 168.93 (17) |
C1—S1—C3—C2 | −1.64 (14) | N1—C7—C10—C11 | −106.53 (19) |
C1—S1—C3—C5 | 169.62 (15) | N1—C7—C10—C9 | 79.4 (2) |
C2—C3—C5—C6 | 91.9 (2) | C8—N2—C11—C10 | 3.1 (3) |
S1—C3—C5—C6 | −77.58 (19) | C9—C10—C11—N2 | 1.5 (3) |
C3—C5—C6—O1 | −60.2 (2) | C7—C10—C11—N2 | −172.97 (17) |
C1—N1—C7—C10 | 11.9 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4A···N3i | 0.88 | 2.29 | 3.142 (2) | 163 |
N4—H4B···O2 | 0.88 | 2.02 | 2.863 (2) | 160 |
O1—H1···N2ii | 0.89 | 1.86 | 2.736 (2) | 171 |
O2—H2A···O1 | 0.86 | 1.92 | 2.786 (2) | 175 |
O2—H2B···Cg1 | 0.88 | 2.69 | 3.385 (2) | 136 |
C1—H1A···Cg2iii | 0.95 | 2.50 | 3.252 (2) | 137 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x, −y+1/2, z−1/2; (iii) x, −y−1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C24H20B−·C12H17N4OS+·H2O |
Mr | 602.58 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 187 |
a, b, c (Å) | 14.6464 (6), 10.6667 (4), 20.4459 (8) |
β (°) | 95.523 (1) |
V (Å3) | 3179.4 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.14 |
Crystal size (mm) | 0.30 × 0.24 × 0.12 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD diffractometer |
Absorption correction | Multi-scan (SAINT; Bruker, 2003) |
Tmin, Tmax | 0.962, 0.986 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 17468, 6251, 5011 |
Rint | 0.026 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.048, 0.123, 1.02 |
No. of reflections | 6251 |
No. of parameters | 399 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.34, −0.27 |
Computer programs: SMART (Bruker, 1998), SMART, SAINT (Bruker, 2003), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), SHELXTL (Bruker, 1997), SHELXTL.
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4A···N3i | 0.88 | 2.29 | 3.142 (2) | 163 |
N4—H4B···O2 | 0.88 | 2.02 | 2.863 (2) | 160 |
O1—H1···N2ii | 0.89 | 1.86 | 2.736 (2) | 171 |
O2—H2A···O1 | 0.86 | 1.92 | 2.786 (2) | 175 |
O2—H2B···Cg1 | 0.88 | 2.69 | 3.385 (2) | 136 |
C1—H1A···Cg2iii | 0.95 | 2.50 | 3.252 (2) | 137 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x, −y+1/2, z−1/2; (iii) x, −y−1/2, z−1/2. |
The construction of hydrogen-bonded networks is one of the goals of organic crystal engineering (Etter, 1991; Desiraju, 1995). In the development of new materials for storage, sensors and catalysis, one target is a host framework that traps anionic or neutral guests (Videnova-Adrabińska, 1996; Beatty, 2003; Biradha, 2003). Thiamine (vitamin B1), as a naturally occurring cationic host, provides multiple sites that serve as donors or acceptors to form various supramolecular arrays by hydrogen bonding (Aoki et al., 1993; Hu et al., 2001b). Structural studies have revealed that the packing features in thiamine–anion systems are closely related to the nature of the anions and the conformation of the thiamine moiety.
It was found that, for example, ClO4− (Kozioł et al., 1987; Aoki et al., 1988), BF4− (Aoki et al., 1990; Hu et al., 2001a) and PF6− (Aoki et al., 1988) anions facilitate the formation of a one-dimensional helical chain, while a molecular column consisting of stacks of alternating cyclic thiamine dimers and anions is commonly observed in the PtCl42− (Cramer et al., 1988), PtCl62− (Aoki et al., 1993) and Pt(NO2)42− (Hu et al., 2001b) salts. In these structures, the thiamine molecule adopts the usual F conformation (torsion angles ϕT = C10—C7—N1—C1 ≈ 0° and ϕP = N1—C7—C10—C9 ≈ ± 90 ° for the F conformation; refer to Fig. 1 for atom labels) (Pletcher et al., 1977). A sole example of a two-dimensional network occurs in the structure of HET·HgI4·H2O [HET is 2-(α-hydroxyethyl)thiamine; Hu et al., 2003), where the substituent at atom C1 imposes the S conformation on the HET molecule (ϕT ≈ ±100° and ϕP ≈ ±150° for the S conformation). In this regard, we were interested as to whether a two-dimensional network can be constructed when thiamine is in the F conformation and how the anion influences the supramolecular assembly. We report here an example, thiaminH.[B(phenyl)4]·H2O, (I), where the thiamine molecules in the F conformation form a two-dimensional cationic network in the presence of B(phenyl)4− anions, rather than helical chains as in the BF4− salt. The tetraphenylborate anions are linked to the network by electrostatic forces and by O—H..π(arene) and C—H..π(arene) hydrogen bonds.
In the structure of (I), thiamine occurs as a monovalent cation with N2 unprotonated. The dimensions of the pyrimidine moiety are in agreement with those found in N2-unprotonated thiamine; the C9—N4 bond length and the C8—N2—C11 bond angle are 1.338 (2) Å and 116.10 (16)° in (I), and 1.337 (4) Å and 115.0 (3)° in thiamine(BF4)·H2O (Aoki et al., 1990), but the bond length decreases [1.318 (5) Å] and the angle increases [119.9 (4)°] in thiamine(BF4)2, which has an N2-protonated pyrimidine ring (Hu et al., 2001a). The thiamine molecule adopts an F conformation in terms of the torsion angles ϕT = 11.9 (2)° and ϕP = 79.4 (2)°, which are comparable to the BF4− salts. Each thiamine molecule coordinates with a water molecule by N4—H···O2—H···O1 hydrogen bonds and an O2–thiazolium-ring close contact [Fig. 1; the closest contact distance O2···C4 = 3.132 (2) Å]. The other H atom of the water molecule forms an O—H..π(arene) hydrogen bonds (Table 1).
As shown in Table 1, a two-dimensional supramolecular network is constructed using two types of hydrogen bond. First, the base-pairing dimer is formed through a self-complementary pyrimidine–pyrimidine interaction involving a pair of N—H···N hydrogen bonds (Fig. 2), which is a supramolecular synthon frequently observed in thiamine structures. Second, an O—H···N hydrogen bond is utilized in the assembly of the dimers to complete the two-dimensional sheet parallel to (100) having (4,4) topology (Batten & Robson, 1998) (Fig. 3). The sheet undulates with a wavelength of ca 10.7 Å and wave height of ca 11.5 Å. The thiazolium rings are located in the ridges and troughs of the wave, and the pyrimidine base-pairs were located in between the ridges and troughs of the wave. Interestingly, the puckered sheets, which are perpendicular to the a axis, are eclipsed such that channels exist along the [−101] direction. The tetraphenylborate anions occupy the channels and are linked to the cationic network via O—H···π(arene) and C—H···π(arene) hydrogen bonds. The C—H···π interaction is typical of host–guest interactions found in thiamine compounds with the F conformation (Aoki et al., 1988).
It was shown in our previous study (Hu et al., 2003) that there are three types of base-paring dimers of thiamine depending on the molecular conformation, that is, U form and Z form for the dimers in the F conformation and linear form for the dimer in the S conformation (Fig. 4). The two-dimensional hydrogen-bonded motif has been observed for the linear-form dimer in the structure of HET·HgI4·H2O and for the Z-form dimer in (I), but not for the U form. The difference between HET·HgI4·H2O and (I) is that an N—H···O1 hydrogen bond is used to propagate the network in the former whereas an O—H···N hydrogen bond is used in the latter. Both types of hydrogen bond involve hydroxy O1 atoms. We note that the C3-hydroxyethyl side chain is trans with respect to the base-pair plane in both the Z form and the linear form but it is cis in the U form. Thus the formation of the two-dimensional network is closely related to the conformation of the base-paring dimers of thiamine.
Moreover, the ability of anions in accepting hydrogen bonds is also a factor that affects the formation of the two-dimensional network. When the anion is strongly electronegative, it competes for the acceptor sites on thiamine, and thus precludes self-assembly of thiamine molecules in multi-dimensional arrays. In contrast, the existence of weakly electronegative anions, such as HgI42− and B(phenyl)4−, allows facile associations between thiamine molecules leading to two-dimensional structures.
In summary, we have synthesized the first cationic two-dimensional network of thiamine in the F conformation utilizing pyrimidine base-pairs as the network nodes. The nature of the anion and molecular conformation of the cation play important roles in determining the self-assembly of thiamine cations.