Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270104006729/gd1310sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270104006729/gd1310Isup2.hkl |
CCDC reference: 241216
All solvents and chemicals were commercially available (reagent grade) and were used without further purification. An aqueous solution of CuCl22H2O was added dropwise to a 0.1 M KOH solution of the ligand, in the molar ratio 1:1, with stirring. The resulting red–purple solution was filtered and the filtrate was left to stand at room temperature. Red–purple crystals formed after a few days.
H atoms attached to C atoms were placed in idealized positions, with Csp3—H distances of 0.96 Å, and constrained to ride on their parent atoms, with Uiso(H) values of 1.5Ueq(C). H atoms attached to O and N atoms were located from difference Fourier maps and their Uiso values were refined?, O—H distances set at 0.786 and 0.0.834 Å and N—H distances in the range 0.847–0.850 Å.
Data collection: SMART (Bruker, 2000); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2000); program(s) used to refine structure: SHELXL97 (Sheldrick, 2000); molecular graphics: SHELXTL/PC (Sheldrick, 1999); software used to prepare material for publication: SHELXTL/PC.
[Cu(C4H10N5)2]·H2O | F(000) = 1416 |
Mr = 337.90 | Dx = 1.605 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 10688 reflections |
a = 30.535 (6) Å | θ = 2.8–27.5° |
b = 7.055 (1) Å | µ = 1.58 mm−1 |
c = 13.746 (3) Å | T = 173 K |
β = 109.18 (3)° | Block, red–purple |
V = 2796.9 (10) Å3 | 0.45 × 0.20 × 0.15 mm |
Z = 8 |
Bruker SMART 1K CCD area-detector diffractometer | 3155 independent reflections |
Radiation source: fine-focus sealed tube | 2423 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.000 |
ϕ and ω scans | θmax = 27.5°, θmin = 2.8° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2000) | h = 0→39 |
Tmin = 0.537, Tmax = 0.798 | k = 0→9 |
3155 measured reflections | l = −17→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.094 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.95 | w = 1/[σ2(Fo2) + (0.05P)2] where P = (Fo2 + 2Fc2)/3 |
3155 reflections | (Δ/σ)max < 0.001 |
188 parameters | Δρmax = 0.66 e Å−3 |
0 restraints | Δρmin = −0.38 e Å−3 |
[Cu(C4H10N5)2]·H2O | V = 2796.9 (10) Å3 |
Mr = 337.90 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 30.535 (6) Å | µ = 1.58 mm−1 |
b = 7.055 (1) Å | T = 173 K |
c = 13.746 (3) Å | 0.45 × 0.20 × 0.15 mm |
β = 109.18 (3)° |
Bruker SMART 1K CCD area-detector diffractometer | 3155 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2000) | 2423 reflections with I > 2σ(I) |
Tmin = 0.537, Tmax = 0.798 | Rint = 0.000 |
3155 measured reflections |
R[F2 > 2σ(F2)] = 0.040 | 0 restraints |
wR(F2) = 0.094 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.95 | Δρmax = 0.66 e Å−3 |
3155 reflections | Δρmin = −0.38 e Å−3 |
188 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cu1 | 0.2500 | 0.2500 | 0.0000 | 0.01991 (13) | |
Cu2 | 0.5000 | 0.29791 (7) | 0.2500 | 0.02119 (13) | |
N1 | 0.31106 (8) | 0.2578 (3) | −0.01147 (19) | 0.0275 (5) | |
H1 | 0.3224 | 0.1593 | −0.0293 | 0.034 (3)* | |
N2 | 0.37393 (8) | 0.3976 (3) | −0.04268 (17) | 0.0265 (5) | |
H2A | 0.3691 | 0.3125 | −0.0887 | 0.034 (3)* | |
H2B | 0.3866 | 0.5022 | −0.0489 | 0.034 (3)* | |
N3 | 0.33272 (7) | 0.5781 (3) | 0.03514 (15) | 0.0212 (4) | |
N4 | 0.26313 (7) | 0.4972 (3) | 0.06671 (16) | 0.0249 (5) | |
H4D | 0.2471 | 0.5376 | 0.1023 | 0.034 (3)* | |
N5 | 0.30861 (8) | 0.7569 (3) | 0.14611 (17) | 0.0240 (5) | |
N6 | 0.43376 (8) | 0.3067 (4) | 0.21996 (16) | 0.0299 (5) | |
H6 | 0.4157 | 0.3256 | 0.1589 | 0.034 (3)* | |
N7 | 0.36293 (7) | 0.3251 (4) | 0.24842 (16) | 0.0269 (5) | |
H7D | 0.3478 | 0.2805 | 0.2852 | 0.034 (3)* | |
H7E | 0.3493 | 0.3181 | 0.1838 | 0.034 (3)* | |
N8 | 0.42703 (8) | 0.2668 (3) | 0.38706 (16) | 0.0209 (4) | |
N9 | 0.50589 (8) | 0.2880 (3) | 0.39462 (16) | 0.0245 (5) | |
H9 | 0.5339 | 0.2964 | 0.4332 | 0.034 (3)* | |
N10 | 0.48579 (8) | 0.2216 (3) | 0.54053 (17) | 0.0242 (5) | |
C1 | 0.33637 (8) | 0.4096 (4) | −0.00690 (18) | 0.0214 (5) | |
C2 | 0.30003 (8) | 0.6044 (4) | 0.08241 (18) | 0.0210 (5) | |
C3 | 0.35429 (9) | 0.8427 (4) | 0.1826 (2) | 0.0305 (6) | |
H3A | 0.3775 | 0.7463 | 0.1914 | 0.046* | |
H3B | 0.3586 | 0.9045 | 0.2473 | 0.046* | |
H3C | 0.3570 | 0.9341 | 0.1331 | 0.046* | |
C4 | 0.27487 (10) | 0.8180 (4) | 0.1937 (2) | 0.0327 (6) | |
H4A | 0.2447 | 0.8242 | 0.1423 | 0.049* | |
H4B | 0.2833 | 0.9409 | 0.2239 | 0.049* | |
H4C | 0.2743 | 0.7291 | 0.2462 | 0.049* | |
C5 | 0.41001 (9) | 0.2982 (4) | 0.28458 (19) | 0.0209 (5) | |
C6 | 0.47343 (9) | 0.2605 (3) | 0.43752 (19) | 0.0210 (5) | |
C7 | 0.45316 (10) | 0.2181 (4) | 0.5971 (2) | 0.0302 (6) | |
H7A | 0.4238 | 0.2671 | 0.5544 | 0.045* | |
H7B | 0.4648 | 0.2948 | 0.6579 | 0.045* | |
H7C | 0.4493 | 0.0901 | 0.6165 | 0.045* | |
C8 | 0.53434 (9) | 0.2073 (4) | 0.6041 (2) | 0.0270 (6) | |
H8A | 0.5509 | 0.1349 | 0.5683 | 0.041* | |
H8B | 0.5366 | 0.1455 | 0.6678 | 0.041* | |
H8C | 0.5475 | 0.3320 | 0.6181 | 0.041* | |
O1 | 0.34525 (7) | −0.1056 (3) | −0.08042 (15) | 0.0302 (5) | |
H1A | 0.3439 | −0.1880 | −0.0380 | 0.031* | |
H1B | 0.3709 | −0.1160 | −0.0800 | 0.031* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu1 | 0.0177 (2) | 0.0225 (2) | 0.0194 (2) | −0.00157 (16) | 0.00588 (17) | −0.00191 (17) |
Cu2 | 0.0207 (2) | 0.0284 (3) | 0.0160 (2) | 0.000 | 0.00804 (17) | 0.000 |
N1 | 0.0240 (13) | 0.0225 (11) | 0.0390 (14) | −0.0014 (9) | 0.0145 (11) | −0.0079 (10) |
N2 | 0.0265 (12) | 0.0260 (12) | 0.0303 (12) | −0.0042 (9) | 0.0141 (10) | −0.0050 (10) |
N3 | 0.0207 (11) | 0.0223 (11) | 0.0209 (11) | −0.0013 (8) | 0.0074 (9) | −0.0014 (9) |
N4 | 0.0230 (11) | 0.0297 (12) | 0.0249 (11) | −0.0007 (9) | 0.0116 (9) | −0.0067 (10) |
N5 | 0.0233 (12) | 0.0250 (12) | 0.0240 (11) | −0.0015 (9) | 0.0080 (9) | −0.0067 (9) |
N6 | 0.0260 (12) | 0.0477 (15) | 0.0167 (11) | 0.0031 (11) | 0.0082 (9) | 0.0052 (10) |
N7 | 0.0213 (11) | 0.0413 (14) | 0.0182 (10) | 0.0026 (10) | 0.0066 (9) | 0.0057 (10) |
N8 | 0.0217 (11) | 0.0261 (11) | 0.0162 (10) | 0.0016 (9) | 0.0079 (8) | 0.0029 (9) |
N9 | 0.0188 (11) | 0.0378 (14) | 0.0167 (10) | −0.0015 (9) | 0.0056 (8) | 0.0005 (9) |
N10 | 0.0197 (11) | 0.0357 (13) | 0.0178 (10) | 0.0012 (9) | 0.0070 (9) | 0.0024 (9) |
C1 | 0.0188 (12) | 0.0269 (13) | 0.0173 (12) | 0.0015 (10) | 0.0045 (10) | 0.0022 (10) |
C2 | 0.0209 (13) | 0.0227 (13) | 0.0181 (12) | 0.0034 (10) | 0.0046 (10) | 0.0016 (10) |
C3 | 0.0304 (15) | 0.0335 (16) | 0.0277 (14) | −0.0080 (12) | 0.0099 (12) | −0.0085 (12) |
C4 | 0.0324 (16) | 0.0355 (16) | 0.0326 (15) | −0.0004 (13) | 0.0140 (12) | −0.0136 (13) |
C5 | 0.0219 (13) | 0.0209 (12) | 0.0204 (12) | 0.0006 (10) | 0.0076 (10) | −0.0001 (10) |
C6 | 0.0219 (13) | 0.0215 (12) | 0.0194 (12) | 0.0018 (10) | 0.0066 (10) | −0.0005 (10) |
C7 | 0.0247 (15) | 0.0439 (17) | 0.0244 (13) | 0.0046 (12) | 0.0114 (11) | 0.0041 (12) |
C8 | 0.0236 (14) | 0.0366 (15) | 0.0189 (12) | 0.0007 (11) | 0.0042 (10) | 0.0021 (11) |
O1 | 0.0347 (11) | 0.0283 (10) | 0.0312 (10) | 0.0085 (8) | 0.0161 (9) | 0.0052 (9) |
Cu1—N1i | 1.923 (2) | N7—H7D | 0.8500 |
Cu1—N1 | 1.923 (2) | N7—H7E | 0.8492 |
Cu1—N4i | 1.950 (2) | N8—C5 | 1.350 (3) |
Cu1—N4 | 1.950 (2) | N8—C6 | 1.358 (3) |
Cu2—N6ii | 1.928 (2) | N9—C6 | 1.324 (3) |
Cu2—N6 | 1.928 (2) | N9—H9 | 0.8467 |
Cu2—N9 | 1.938 (2) | N10—C6 | 1.368 (3) |
Cu2—N9ii | 1.938 (2) | N10—C7 | 1.452 (3) |
N1—C1 | 1.310 (3) | N10—C8 | 1.456 (3) |
N1—H1 | 0.8484 | C3—H3A | 0.9600 |
N2—C1 | 1.391 (3) | C3—H3B | 0.9600 |
N2—H2A | 0.8493 | C3—H3C | 0.9600 |
N2—H2B | 0.8494 | C4—H4A | 0.9600 |
N3—C1 | 1.342 (3) | C4—H4B | 0.9600 |
N3—C2 | 1.371 (3) | C4—H4C | 0.9600 |
N4—C2 | 1.315 (3) | C7—H7A | 0.9600 |
N4—H4D | 0.8469 | C7—H7B | 0.9600 |
N5—C2 | 1.357 (3) | C7—H7C | 0.9600 |
N5—C3 | 1.451 (3) | C8—H8A | 0.9600 |
N5—C4 | 1.455 (3) | C8—H8B | 0.9600 |
N6—C5 | 1.320 (3) | C8—H8C | 0.9600 |
N6—H6 | 0.8500 | O1—H1A | 0.8341 |
N7—C5 | 1.371 (3) | O1—H1B | 0.7859 |
N1i—Cu1—N1 | 180.00 (14) | N1—C1—N3 | 127.8 (2) |
N1i—Cu1—N4i | 87.59 (9) | N1—C1—N2 | 118.4 (2) |
N1—Cu1—N4i | 92.41 (9) | N3—C1—N2 | 113.6 (2) |
N1i—Cu1—N4 | 92.41 (9) | N4—C2—N5 | 122.4 (2) |
N1—Cu1—N4 | 87.59 (9) | N4—C2—N3 | 124.2 (2) |
N4i—Cu1—N4 | 180.00 (13) | N5—C2—N3 | 113.4 (2) |
N6ii—Cu2—N6 | 176.31 (16) | N5—C3—H3A | 109.5 |
N6ii—Cu2—N9 | 92.54 (10) | N5—C3—H3B | 109.5 |
N6—Cu2—N9 | 87.60 (10) | H3A—C3—H3B | 109.5 |
N6ii—Cu2—N9ii | 87.60 (10) | N5—C3—H3C | 109.5 |
N6—Cu2—N9ii | 92.54 (10) | H3A—C3—H3C | 109.5 |
N9—Cu2—N9ii | 175.87 (14) | H3B—C3—H3C | 109.5 |
C1—N1—Cu1 | 126.31 (18) | N5—C4—H4A | 109.5 |
C1—N1—H1 | 113.1 | N5—C4—H4B | 109.5 |
Cu1—N1—H1 | 120.0 | H4A—C4—H4B | 109.5 |
C1—N2—H2A | 110.2 | N5—C4—H4C | 109.5 |
C1—N2—H2B | 115.9 | H4A—C4—H4C | 109.5 |
H2A—N2—H2B | 120.8 | H4B—C4—H4C | 109.5 |
C1—N3—C2 | 120.0 (2) | N6—C5—N8 | 127.0 (2) |
C2—N4—Cu1 | 128.65 (17) | N6—C5—N7 | 119.5 (2) |
C2—N4—H4D | 109.8 | N8—C5—N7 | 113.5 (2) |
Cu1—N4—H4D | 120.3 | N9—C6—N8 | 125.2 (2) |
C2—N5—C3 | 120.9 (2) | N9—C6—N10 | 119.9 (2) |
C2—N5—C4 | 120.6 (2) | N8—C6—N10 | 115.0 (2) |
C3—N5—C4 | 117.6 (2) | N10—C7—H7A | 109.5 |
C5—N6—Cu2 | 128.62 (19) | N10—C7—H7B | 109.5 |
C5—N6—H6 | 110.4 | H7A—C7—H7B | 109.5 |
Cu2—N6—H6 | 120.9 | N10—C7—H7C | 109.5 |
C5—N7—H7D | 116.3 | H7A—C7—H7C | 109.5 |
C5—N7—H7E | 117.7 | H7B—C7—H7C | 109.5 |
H7D—N7—H7E | 115.2 | N10—C8—H8A | 109.5 |
C5—N8—C6 | 121.2 (2) | N10—C8—H8B | 109.5 |
C6—N9—Cu2 | 129.18 (19) | H8A—C8—H8B | 109.5 |
C6—N9—H9 | 118.7 | N10—C8—H8C | 109.5 |
Cu2—N9—H9 | 112.0 | H8A—C8—H8C | 109.5 |
C6—N10—C7 | 123.6 (2) | H8B—C8—H8C | 109.5 |
C6—N10—C8 | 121.0 (2) | H1A—O1—H1B | 102.0 |
C7—N10—C8 | 114.8 (2) |
Symmetry codes: (i) −x+1/2, −y+1/2, −z; (ii) −x+1, y, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1 | 0.85 | 2.19 | 3.035 (3) | 175 |
N2—H2B···N8iii | 0.85 | 2.38 | 3.193 (3) | 160 |
N7—H7D···O1iv | 0.85 | 2.24 | 3.010 (3) | 150 |
N7—H7E···N1 | 0.85 | 2.59 | 3.432 (3) | 174 |
O1—H1A···N3v | 0.83 | 2.02 | 2.838 (3) | 167 |
O1—H1B···N8vi | 0.79 | 2.19 | 2.909 (3) | 153 |
Symmetry codes: (iii) x, −y+1, z−1/2; (iv) x, −y, z+1/2; (v) x, y−1, z; (vi) x, −y, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | [Cu(C4H10N5)2]·H2O |
Mr | 337.90 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 173 |
a, b, c (Å) | 30.535 (6), 7.055 (1), 13.746 (3) |
β (°) | 109.18 (3) |
V (Å3) | 2796.9 (10) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 1.58 |
Crystal size (mm) | 0.45 × 0.20 × 0.15 |
Data collection | |
Diffractometer | Bruker SMART 1K CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2000) |
Tmin, Tmax | 0.537, 0.798 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3155, 3155, 2423 |
Rint | 0.000 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.040, 0.094, 0.95 |
No. of reflections | 3155 |
No. of parameters | 188 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.66, −0.38 |
Computer programs: SMART (Bruker, 2000), SAINT (Bruker, 2000), SAINT, SHELXS97 (Sheldrick, 2000), SHELXL97 (Sheldrick, 2000), SHELXTL/PC (Sheldrick, 1999), SHELXTL/PC.
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1 | 0.85 | 2.19 | 3.035 (3) | 175 |
N2—H2B···N8i | 0.85 | 2.38 | 3.193 (3) | 160 |
N7—H7D···O1ii | 0.85 | 2.24 | 3.010 (3) | 150 |
N7—H7E···N1 | 0.85 | 2.59 | 3.432 (3) | 174 |
O1—H1A···N3iii | 0.83 | 2.02 | 2.838 (3) | 167 |
O1—H1B···N8iv | 0.79 | 2.19 | 2.909 (3) | 153 |
Symmetry codes: (i) x, −y+1, z−1/2; (ii) x, −y, z+1/2; (iii) x, y−1, z; (iv) x, −y, z−1/2. |
An N-substituted derivative of biguanide, N,N-dimethylbiguanide, is a powerful oral antihyperglycaemic drug that has been used in many countries for over 40 years for treating diabetic patients with non-insulin-dependent diabetes mellitus. This compound forms complexes with many metal ions (Ray, 1961; Viossat et al., 1995; Lemoine et al., 1996; Bentefrit et al., 1997; Zhu et al., 2002a,b,c). We report here the structure of a new copper(II) complex, (I), of N,N-dimethylbiguanide.
The asymmetric unit of (I) contains two copper N,N-dimethylbiguanide complexes and two water molecules (Fig. 1). The copper N,N-dimethylbiguanide complexes have square-planar coordination of the metal ion through the formation of four Cu—N bonds with two bidentate ligands. The two ligands form a slightly distorted plane, with the Cu atom at the center. The dimethyl groups of the two ligands have a trans configuration. These properties agree with those of other copper N,N-dimethylbiguanide complexes (Viossat et al., 1995; Lemoine et al., 1996; Zhu et al., 2002b). However, in (I), the two copper N,N-dimethylbiguanide complexes have different symmetry. Atom Cu1 lies on an inversion centre, while atom Cu2 lies on a twofold rotation axis. The Cu—N bond lengths in the complexes are also slightly different (Table 1).
The crystal structure is stabilized by N—H···O, O—H···N and N—H···N hydrogen bonds (Table 2 and Fig. 2). The water molecule forms four hydrogen bonds involving three different copper N,N-dimethylbiguanide complexes, viz. two hydrogen bonds with one copper N,N-dimethylbiguanide complex (containing atom Cu2) and one hydrogen bond with each of the neighboring complexes (containing atom Cu1). The complexes containing atoms Cu1 and Cu2 are connected to one another by N—H···N hydrogen bonds and by N—H···O and O—H···N hydrogen bonds. Neighbouring complexes containing atoms Cu1 or Cu2 are linked indirectly by N—H···O and O—H···N hydrogen bonds via the water molecules. The antiparallel zigzag hydrogen-bond chains [N7—H···O···H—N1···H–]n run throughout the crystal.