Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270103005286/gd1245sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270103005286/gd1245Isup2.hkl |
CCDC reference: 214387
To a solution of the diol (b, R is iso-butyl) (1.12 g, 3.88 mmol) in dry pyridine (20 ml), p-TsCl (1.77 g, 9.28 mmol) was added, and the reaction mixture was stirred for 2 d at room temperature. When the reaction was complete (TLC), the solvent was evaporated under reduced pressure, and the residue was dissolved in CH2Cl2 (20 ml) and washed with H2O, HOAc (5%), and H2O. The organic phase was dried (Na2SO4) and evaporated. The crude tosylate was used in the next step without further purification. The tosylate was reacted with sodium azide (0.60 g, 9.23 mmol) in DMF (30 ml). The reaction mixture was heated for 1 h at 100 °C, and stirred overnight at room temperature. The salt was removed by filtration and the filtrate evaporated under reduced pressure. The remaining solid was purified by ash chromatography using petroleum ether/ethyl acetate (5:2) as eluent. Compound (I) was obtained as a white solid (0.96 g, 73.1% total yield; m.p. 380–381 K; from ethanol). Single crystals suitable for X-ray analysis were obtained by slow evaporation of a dilute ethanol solution of (I). [α]D20 = −90 (c = 1 in CH2Cl2); 1H NMR (CDCl3, 300 MHz, δ, p.p.m.): 7.53 (d, J = 9.1 Hz, 2H, NH), 4.13 (dt, J = 9.5 Hz, J' = 4.7 Hz, 2H, CHα), 3.46 (m, 4H, CH2), 1.65–1.39 (m, 6H, CHγ and CHβ), 0.95/0.94 (2 d, J = 5.1 Hz, 6H each, CH3); 13C NMR (CDCl3, 75 MHz, δ, p.p.m.): 159.3 (CONH), 54.6 (CH2) 47.8 (CHα), 40.8 (CHβ), 24.7 (CHγ), 23.0 and 22.0 (CH3); IR (KBr, νmax, cm-1): 3295 (NH), 2099 (azide), 1654 (amide 1), 1522 (amide 2).
Atomic scattering factors were those included in SHELXL97. The H-atom coordinates were calculated geometrically and refined using the SHELXL97 riding model.
Data collection: COLLECT (Nonius BV, 1997–2000); cell refinement: HKL SCALEPACK (Otwinowski & Minor 1997); data reduction: HKL DENZO and SCALEPACK (Otwinowski & Minor 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON (Spek, 1999).
C14H26N8O2 | F(000) = 1456 |
Mr = 338.43 | Dx = 1.225 Mg m−3 |
Monoclinic, C2 | Mo Kα radiation, λ = 0.71069 Å |
Hall symbol: C 2y | Cell parameters from 4035 reflections |
a = 24.0235 (5) Å | θ = 2.9–27.1° |
b = 7.9361 (2) Å | µ = 0.09 mm−1 |
c = 20.2167 (5) Å | T = 150 K |
β = 107.824 (1)° | Prism, colorless |
V = 3669.37 (15) Å3 | 0.25 × 0.25 × 0.12 mm |
Z = 8 |
KappaCCD diffractometer | Rint = 0 |
CCD rotation images, thick slices scans | θmax = 27.1°, θmin = 3.3° |
7645 measured reflections | h = −30→30 |
7645 independent reflections | k = −10→10 |
5889 reflections with I > 2σ(I) | l = −25→25 |
Refinement on F2 | 1 restraint |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.054 | w = 1/[σ2(Fo2) + (0.0475P)2 + 3.569P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.129 | (Δ/σ)max = 0.001 |
S = 1.03 | Δρmax = 0.21 e Å−3 |
7645 reflections | Δρmin = −0.29 e Å−3 |
449 parameters |
C14H26N8O2 | V = 3669.37 (15) Å3 |
Mr = 338.43 | Z = 8 |
Monoclinic, C2 | Mo Kα radiation |
a = 24.0235 (5) Å | µ = 0.09 mm−1 |
b = 7.9361 (2) Å | T = 150 K |
c = 20.2167 (5) Å | 0.25 × 0.25 × 0.12 mm |
β = 107.824 (1)° |
KappaCCD diffractometer | 5889 reflections with I > 2σ(I) |
7645 measured reflections | Rint = 0 |
7645 independent reflections |
R[F2 > 2σ(F2)] = 0.054 | 1 restraint |
wR(F2) = 0.129 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.21 e Å−3 |
7645 reflections | Δρmin = −0.29 e Å−3 |
449 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
O13 | 0.94280 (8) | 0.4182 (2) | 0.91922 (9) | 0.0340 (4) | |
O1 | 0.94218 (7) | 0.4575 (2) | 0.66378 (8) | 0.0289 (4) | |
O12 | 1.03112 (8) | 0.5700 (2) | 0.82281 (8) | 0.0346 (4) | |
N11 | 1.04680 (9) | 0.6132 (3) | 0.68753 (10) | 0.0242 (5) | |
N1 | 0.93215 (9) | 0.4428 (3) | 0.54865 (10) | 0.0241 (4) | |
O11 | 1.04798 (7) | 0.5308 (2) | 0.58041 (8) | 0.0315 (4) | |
N12 | 1.05454 (10) | 0.5287 (3) | 0.93906 (11) | 0.0317 (5) | |
N13 | 0.92591 (9) | 0.4302 (3) | 0.80212 (11) | 0.0281 (5) | |
C2 | 0.87294 (10) | 0.3753 (3) | 0.52703 (13) | 0.0265 (5) | |
H2 | 0.8571 | 0.3854 | 0.5662 | 0.032* | |
C1 | 0.96135 (10) | 0.4757 (3) | 0.61449 (12) | 0.0224 (5) | |
C13 | 0.95800 (11) | 0.4499 (3) | 0.86784 (12) | 0.0265 (5) | |
N21 | 1.20955 (10) | 0.6180 (3) | 0.77775 (13) | 0.0373 (5) | |
C11 | 1.02356 (10) | 0.5428 (3) | 0.62557 (12) | 0.0225 (5) | |
C4 | 0.83261 (11) | 0.4716 (4) | 0.46543 (13) | 0.0295 (6) | |
H4A | 0.7934 | 0.4264 | 0.4556 | 0.035* | |
H4B | 0.8453 | 0.4505 | 0.425 | 0.035* | |
C23 | 0.86768 (11) | 0.3572 (3) | 0.77892 (13) | 0.0293 (6) | |
H23 | 0.8552 | 0.3298 | 0.8195 | 0.035* | |
C12 | 1.01901 (11) | 0.5224 (3) | 0.87473 (12) | 0.0275 (6) | |
N23 | 0.91222 (13) | 0.0748 (4) | 0.78074 (13) | 0.0496 (7) | |
C41 | 1.10451 (12) | 0.8488 (3) | 0.75174 (13) | 0.0276 (5) | |
H41A | 1.0904 | 0.8217 | 0.7906 | 0.033* | |
H41B | 1.1444 | 0.8886 | 0.7707 | 0.033* | |
C51 | 1.06744 (12) | 0.9915 (3) | 0.71073 (13) | 0.0312 (6) | |
H51 | 1.0277 | 0.9484 | 0.6898 | 0.037* | |
C53 | 0.81026 (12) | 0.6387 (4) | 0.76647 (14) | 0.0345 (6) | |
H53 | 0.8473 | 0.6881 | 0.7948 | 0.041* | |
C21 | 1.10508 (11) | 0.6874 (3) | 0.71088 (13) | 0.0274 (6) | |
H21 | 1.117 | 0.7156 | 0.67 | 0.033* | |
C31 | 1.14696 (11) | 0.5542 (3) | 0.75314 (13) | 0.0321 (6) | |
H31A | 1.1349 | 0.5228 | 0.7931 | 0.039* | |
H31B | 1.145 | 0.4544 | 0.7248 | 0.039* | |
C6 | 0.81837 (12) | 0.7088 (4) | 0.54283 (14) | 0.0382 (7) | |
H6A | 0.8171 | 0.8291 | 0.5468 | 0.057* | |
H6B | 0.8491 | 0.6644 | 0.5813 | 0.057* | |
H6C | 0.7816 | 0.6618 | 0.5431 | 0.057* | |
C33 | 0.86818 (12) | 0.1972 (3) | 0.73754 (14) | 0.0346 (6) | |
H33A | 0.8296 | 0.1462 | 0.7239 | 0.042* | |
H33B | 0.878 | 0.2247 | 0.6957 | 0.042* | |
N33 | 0.92140 (11) | −0.0423 (4) | 0.75094 (15) | 0.0459 (6) | |
C43 | 0.82392 (11) | 0.4803 (3) | 0.73210 (13) | 0.0316 (6) | |
H43A | 0.8389 | 0.5142 | 0.6946 | 0.038* | |
H43B | 0.7876 | 0.4204 | 0.7113 | 0.038* | |
C22 | 1.11408 (12) | 0.5955 (4) | 0.95643 (13) | 0.0356 (6) | |
H22 | 1.1188 | 0.6481 | 0.9146 | 0.043* | |
C5 | 0.82999 (11) | 0.6628 (3) | 0.47530 (13) | 0.0319 (6) | |
H5 | 0.868 | 0.7103 | 0.4766 | 0.038* | |
N22 | 1.15505 (14) | 0.3468 (4) | 0.91575 (13) | 0.0531 (7) | |
N32 | 1.17922 (12) | 0.2187 (5) | 0.92676 (14) | 0.0578 (8) | |
N2 | 0.90824 (14) | 0.0881 (3) | 0.57360 (13) | 0.0473 (7) | |
C3 | 0.87373 (13) | 0.1891 (4) | 0.50872 (14) | 0.0370 (6) | |
H3A | 0.8919 | 0.1751 | 0.4723 | 0.044* | |
H3B | 0.834 | 0.1469 | 0.4917 | 0.044* | |
C71 | 1.08958 (15) | 1.0554 (4) | 0.65219 (16) | 0.0480 (8) | |
H71A | 1.0647 | 1.1448 | 0.6279 | 0.072* | |
H71B | 1.0891 | 0.9649 | 0.6205 | 0.072* | |
H71C | 1.1288 | 1.0967 | 0.6713 | 0.072* | |
C63 | 0.77265 (14) | 0.6005 (5) | 0.81405 (16) | 0.0487 (8) | |
H63A | 0.7648 | 0.7034 | 0.8345 | 0.073* | |
H63B | 0.7933 | 0.5242 | 0.8501 | 0.073* | |
H63C | 0.7364 | 0.5502 | 0.7872 | 0.073* | |
N43 | 0.93402 (14) | −0.1639 (4) | 0.72698 (19) | 0.0658 (9) | |
N31 | 1.22629 (11) | 0.6502 (4) | 0.83772 (17) | 0.0518 (7) | |
C42 | 1.12641 (14) | 0.7288 (4) | 1.01360 (15) | 0.0440 (7) | |
H42A | 1.1313 | 0.6717 | 1.0574 | 0.053* | |
H42B | 1.1634 | 0.7822 | 1.0164 | 0.053* | |
C61 | 1.06429 (15) | 1.1373 (4) | 0.75922 (16) | 0.0461 (8) | |
H61A | 1.0407 | 1.2262 | 0.7326 | 0.069* | |
H61B | 1.103 | 1.1788 | 0.7818 | 0.069* | |
H61C | 1.0472 | 1.098 | 0.7935 | 0.069* | |
C32 | 1.15806 (13) | 0.4541 (4) | 0.97808 (15) | 0.0449 (7) | |
H32A | 1.1971 | 0.5003 | 0.9971 | 0.054* | |
H32B | 1.1495 | 0.3862 | 1.0137 | 0.054* | |
C73 | 0.77896 (14) | 0.7676 (4) | 0.71150 (17) | 0.0453 (8) | |
H73A | 0.7705 | 0.8668 | 0.7339 | 0.068* | |
H73B | 0.7431 | 0.72 | 0.6823 | 0.068* | |
H73C | 0.8036 | 0.7969 | 0.6837 | 0.068* | |
C52 | 1.08105 (17) | 0.8664 (4) | 1.00621 (17) | 0.0548 (9) | |
H52 | 1.0468 | 0.8157 | 1.015 | 0.066* | |
N42 | 1.20105 (16) | 0.0862 (5) | 0.93030 (18) | 0.0794 (11) | |
N4 | 0.96361 (18) | −0.1333 (5) | 0.55828 (19) | 0.0867 (12) | |
C7 | 0.78316 (13) | 0.7401 (4) | 0.41299 (16) | 0.0475 (8) | |
H7A | 0.7815 | 0.8597 | 0.4194 | 0.071* | |
H7B | 0.7458 | 0.6913 | 0.4094 | 0.071* | |
H7C | 0.7929 | 0.7177 | 0.3712 | 0.071* | |
C62 | 1.06080 (19) | 0.9483 (5) | 0.93493 (19) | 0.0680 (11) | |
H62A | 1.0321 | 1.033 | 0.9343 | 0.102* | |
H62B | 1.0439 | 0.8643 | 0.9005 | 0.102* | |
H62C | 1.0936 | 0.9992 | 0.925 | 0.102* | |
C72 | 1.1056 (3) | 1.0000 (6) | 1.0624 (2) | 0.0927 (15) | |
H72A | 1.0771 | 1.0873 | 1.0583 | 0.139* | |
H72B | 1.1405 | 1.0475 | 1.0566 | 0.139* | |
H72C | 1.1145 | 0.9487 | 1.1074 | 0.139* | |
N3 | 0.93357 (14) | −0.0144 (5) | 0.56273 (15) | 0.0600 (8) | |
N41 | 1.24793 (15) | 0.6881 (5) | 0.89497 (18) | 0.0839 (11) | |
H11N | 1.0281 (11) | 0.602 (3) | 0.7161 (13) | 0.022 (7)* | |
H1N | 0.9496 (12) | 0.459 (4) | 0.5192 (14) | 0.028 (7)* | |
H13N | 0.9407 (11) | 0.456 (3) | 0.7725 (13) | 0.019 (6)* | |
H12N | 1.0426 (11) | 0.494 (3) | 0.9707 (14) | 0.024 (7)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O13 | 0.0394 (11) | 0.0418 (11) | 0.0225 (9) | −0.0107 (9) | 0.0118 (8) | −0.0018 (8) |
O1 | 0.0320 (10) | 0.0361 (10) | 0.0200 (8) | −0.0061 (8) | 0.0100 (7) | −0.0021 (8) |
O12 | 0.0367 (10) | 0.0467 (11) | 0.0199 (9) | −0.0118 (9) | 0.0079 (7) | 0.0022 (8) |
N11 | 0.0258 (11) | 0.0297 (12) | 0.0191 (10) | −0.0048 (9) | 0.0097 (9) | −0.0034 (9) |
N1 | 0.0235 (11) | 0.0307 (12) | 0.0187 (10) | −0.0019 (9) | 0.0073 (9) | 0.0004 (9) |
O11 | 0.0273 (9) | 0.0453 (11) | 0.0229 (9) | −0.0045 (8) | 0.0092 (7) | −0.0085 (8) |
N12 | 0.0342 (13) | 0.0410 (14) | 0.0196 (11) | −0.0125 (10) | 0.0076 (9) | 0.0004 (10) |
N13 | 0.0286 (12) | 0.0372 (13) | 0.0190 (11) | −0.0074 (10) | 0.0081 (9) | 0.0017 (9) |
C2 | 0.0239 (13) | 0.0321 (14) | 0.0236 (12) | −0.0040 (11) | 0.0073 (10) | −0.0007 (11) |
C1 | 0.0265 (13) | 0.0199 (12) | 0.0211 (12) | 0.0004 (10) | 0.0078 (10) | −0.0008 (10) |
C13 | 0.0328 (14) | 0.0260 (13) | 0.0216 (12) | −0.0023 (11) | 0.0096 (10) | 0.0002 (10) |
N21 | 0.0296 (12) | 0.0419 (14) | 0.0408 (14) | 0.0046 (11) | 0.0114 (11) | −0.0046 (11) |
C11 | 0.0245 (12) | 0.0224 (12) | 0.0197 (12) | 0.0029 (10) | 0.0053 (9) | 0.0021 (10) |
C4 | 0.0233 (13) | 0.0412 (15) | 0.0229 (12) | −0.0032 (12) | 0.0056 (10) | −0.0024 (11) |
C23 | 0.0312 (14) | 0.0351 (15) | 0.0218 (12) | −0.0074 (12) | 0.0081 (11) | 0.0005 (11) |
C12 | 0.0364 (15) | 0.0246 (13) | 0.0214 (13) | −0.0038 (11) | 0.0086 (11) | −0.0018 (10) |
N23 | 0.0645 (18) | 0.0473 (17) | 0.0329 (14) | 0.0023 (15) | 0.0090 (12) | 0.0051 (13) |
C41 | 0.0321 (14) | 0.0267 (13) | 0.0232 (12) | −0.0068 (11) | 0.0074 (10) | −0.0006 (10) |
C51 | 0.0323 (14) | 0.0301 (14) | 0.0305 (14) | −0.0008 (12) | 0.0085 (11) | 0.0030 (11) |
C53 | 0.0329 (14) | 0.0402 (16) | 0.0329 (14) | −0.0077 (13) | 0.0136 (12) | −0.0089 (12) |
C21 | 0.0272 (13) | 0.0305 (14) | 0.0240 (12) | −0.0051 (11) | 0.0070 (10) | −0.0009 (11) |
C31 | 0.0318 (14) | 0.0314 (14) | 0.0308 (14) | −0.0010 (12) | 0.0059 (11) | −0.0044 (12) |
C6 | 0.0358 (15) | 0.0397 (16) | 0.0386 (16) | 0.0070 (13) | 0.0108 (12) | −0.0021 (13) |
C33 | 0.0365 (15) | 0.0323 (15) | 0.0313 (14) | −0.0062 (13) | 0.0049 (12) | −0.0001 (12) |
N33 | 0.0388 (15) | 0.0407 (17) | 0.0637 (18) | 0.0060 (13) | 0.0237 (13) | 0.0199 (15) |
C43 | 0.0288 (14) | 0.0378 (15) | 0.0264 (13) | −0.0067 (12) | 0.0059 (11) | −0.0032 (12) |
C22 | 0.0355 (15) | 0.0447 (17) | 0.0238 (13) | −0.0106 (13) | 0.0046 (11) | −0.0016 (12) |
C5 | 0.0263 (14) | 0.0371 (15) | 0.0305 (14) | 0.0024 (12) | 0.0061 (11) | 0.0065 (11) |
N22 | 0.071 (2) | 0.0502 (17) | 0.0302 (14) | 0.0069 (16) | 0.0035 (13) | 0.0018 (13) |
N32 | 0.0382 (16) | 0.096 (3) | 0.0390 (16) | 0.0067 (18) | 0.0122 (12) | −0.0010 (17) |
N2 | 0.078 (2) | 0.0301 (15) | 0.0348 (14) | −0.0128 (15) | 0.0192 (14) | −0.0107 (11) |
C3 | 0.0430 (16) | 0.0312 (15) | 0.0330 (15) | −0.0052 (13) | 0.0060 (13) | −0.0034 (12) |
C71 | 0.059 (2) | 0.0445 (18) | 0.0446 (17) | 0.0056 (16) | 0.0218 (15) | 0.0182 (15) |
C63 | 0.0443 (18) | 0.061 (2) | 0.0463 (18) | −0.0041 (16) | 0.0214 (14) | −0.0073 (16) |
N43 | 0.059 (2) | 0.0431 (17) | 0.102 (3) | 0.0081 (15) | 0.0354 (19) | 0.0031 (17) |
N31 | 0.0378 (15) | 0.0484 (17) | 0.060 (2) | −0.0007 (13) | 0.0009 (14) | 0.0048 (14) |
C42 | 0.0489 (18) | 0.0517 (19) | 0.0292 (15) | −0.0180 (16) | 0.0086 (13) | −0.0062 (13) |
C61 | 0.064 (2) | 0.0293 (15) | 0.0443 (17) | 0.0047 (15) | 0.0149 (16) | 0.0013 (13) |
C32 | 0.0380 (16) | 0.058 (2) | 0.0332 (15) | −0.0017 (16) | 0.0036 (12) | −0.0008 (15) |
C73 | 0.0458 (18) | 0.0385 (17) | 0.054 (2) | 0.0056 (14) | 0.0181 (15) | 0.0002 (14) |
C52 | 0.074 (2) | 0.048 (2) | 0.0439 (19) | −0.0026 (19) | 0.0201 (17) | −0.0032 (16) |
N42 | 0.071 (2) | 0.101 (3) | 0.069 (2) | 0.040 (2) | 0.0269 (18) | 0.008 (2) |
N4 | 0.089 (3) | 0.068 (2) | 0.081 (3) | 0.025 (2) | −0.008 (2) | −0.010 (2) |
C7 | 0.0405 (17) | 0.058 (2) | 0.0385 (17) | 0.0130 (16) | 0.0034 (13) | 0.0098 (15) |
C62 | 0.091 (3) | 0.047 (2) | 0.063 (2) | 0.000 (2) | 0.018 (2) | 0.0016 (19) |
C72 | 0.147 (5) | 0.066 (3) | 0.061 (3) | 0.004 (3) | 0.025 (3) | −0.019 (2) |
N3 | 0.0560 (19) | 0.057 (2) | 0.0481 (17) | −0.0150 (18) | −0.0115 (14) | 0.0091 (16) |
N41 | 0.076 (2) | 0.098 (3) | 0.055 (2) | −0.028 (2) | −0.0134 (17) | −0.009 (2) |
O13—C13 | 1.228 (3) | C6—H6C | 0.96 |
O1—C1 | 1.227 (3) | C33—H33A | 0.97 |
O12—C12 | 1.231 (3) | C33—H33B | 0.97 |
N11—C11 | 1.328 (3) | N33—N43 | 1.161 (4) |
N11—C21 | 1.458 (3) | C43—H43A | 0.97 |
N11—H11N | 0.84 (3) | C43—H43B | 0.97 |
N1—C1 | 1.327 (3) | C22—C32 | 1.511 (4) |
N1—C2 | 1.456 (3) | C22—C42 | 1.528 (4) |
N1—H1N | 0.84 (3) | C22—H22 | 0.98 |
O11—C11 | 1.231 (3) | C5—C7 | 1.537 (4) |
N12—C12 | 1.320 (3) | C5—H5 | 0.98 |
N12—C22 | 1.464 (3) | N22—N32 | 1.158 (4) |
N12—H12N | 0.82 (3) | N22—C32 | 1.504 (4) |
N13—C13 | 1.325 (3) | N32—N42 | 1.168 (5) |
N13—C23 | 1.453 (3) | N2—N3 | 1.078 (4) |
N13—H13N | 0.81 (3) | N2—C3 | 1.544 (4) |
C2—C3 | 1.525 (4) | C3—H3A | 0.97 |
C2—C4 | 1.528 (3) | C3—H3B | 0.97 |
C2—H2 | 0.98 | C71—H71A | 0.96 |
C1—C11 | 1.537 (3) | C71—H71B | 0.96 |
C13—C12 | 1.541 (4) | C71—H71C | 0.96 |
N21—N31 | 1.183 (4) | C63—H63A | 0.96 |
N21—C31 | 1.519 (4) | C63—H63B | 0.96 |
C4—C5 | 1.534 (4) | C63—H63C | 0.96 |
C4—H4A | 0.97 | N31—N41 | 1.154 (4) |
C4—H4B | 0.97 | C42—C52 | 1.517 (5) |
C23—C33 | 1.523 (4) | C42—H42A | 0.97 |
C23—C43 | 1.532 (4) | C42—H42B | 0.97 |
C23—H23 | 0.98 | C61—H61A | 0.96 |
N23—N33 | 1.165 (4) | C61—H61B | 0.96 |
N23—C33 | 1.503 (4) | C61—H61C | 0.96 |
C41—C51 | 1.520 (4) | C32—H32A | 0.97 |
C41—C21 | 1.527 (4) | C32—H32B | 0.97 |
C41—H41A | 0.97 | C73—H73A | 0.96 |
C41—H41B | 0.97 | C73—H73B | 0.96 |
C51—C71 | 1.525 (4) | C73—H73C | 0.96 |
C51—C61 | 1.533 (4) | C52—C62 | 1.519 (5) |
C51—H51 | 0.98 | C52—C72 | 1.533 (5) |
C53—C43 | 1.520 (4) | C52—H52 | 0.98 |
C53—C73 | 1.528 (4) | N4—N3 | 1.208 (5) |
C53—C63 | 1.538 (4) | C7—H7A | 0.96 |
C53—H53 | 0.98 | C7—H7B | 0.96 |
C21—C31 | 1.527 (4) | C7—H7C | 0.96 |
C21—H21 | 0.98 | C62—H62A | 0.96 |
C31—H31A | 0.97 | C62—H62B | 0.96 |
C31—H31B | 0.97 | C62—H62C | 0.96 |
C6—C5 | 1.519 (4) | C72—H72A | 0.96 |
C6—H6A | 0.96 | C72—H72B | 0.96 |
C6—H6B | 0.96 | C72—H72C | 0.96 |
C11—N11—C21 | 124.0 (2) | C53—C43—H43A | 108.1 |
C11—N11—H11N | 116.4 (18) | C23—C43—H43A | 108.1 |
C21—N11—H11N | 119.0 (18) | C53—C43—H43B | 108.1 |
C1—N1—C2 | 122.8 (2) | C23—C43—H43B | 108.1 |
C1—N1—H1N | 117.2 (18) | H43A—C43—H43B | 107.3 |
C2—N1—H1N | 120.0 (18) | N12—C22—C32 | 110.2 (2) |
C12—N12—C22 | 122.7 (2) | N12—C22—C42 | 112.4 (2) |
C12—N12—H12N | 118.5 (18) | C32—C22—C42 | 109.8 (2) |
C22—N12—H12N | 118.8 (18) | N12—C22—H22 | 108.1 |
C13—N13—C23 | 125.3 (2) | C32—C22—H22 | 108.1 |
C13—N13—H13N | 117.3 (18) | C42—C22—H22 | 108.1 |
C23—N13—H13N | 117.4 (18) | C6—C5—C4 | 112.4 (2) |
N1—C2—C3 | 110.2 (2) | C6—C5—C7 | 110.5 (2) |
N1—C2—C4 | 112.2 (2) | C4—C5—C7 | 109.7 (2) |
C3—C2—C4 | 109.8 (2) | C6—C5—H5 | 108 |
N1—C2—H2 | 108.2 | C4—C5—H5 | 108 |
C3—C2—H2 | 108.2 | C7—C5—H5 | 108 |
C4—C2—H2 | 108.2 | N32—N22—C32 | 116.3 (3) |
O1—C1—N1 | 125.2 (2) | N22—N32—N42 | 172.7 (4) |
O1—C1—C11 | 120.8 (2) | N3—N2—C3 | 114.1 (3) |
N1—C1—C11 | 113.98 (19) | C2—C3—N2 | 109.9 (2) |
O13—C13—N13 | 126.3 (2) | C2—C3—H3A | 109.7 |
O13—C13—C12 | 121.4 (2) | N2—C3—H3A | 109.7 |
N13—C13—C12 | 112.3 (2) | C2—C3—H3B | 109.7 |
N31—N21—C31 | 113.6 (2) | N2—C3—H3B | 109.7 |
O11—C11—N11 | 125.0 (2) | H3A—C3—H3B | 108.2 |
O11—C11—C1 | 121.9 (2) | C51—C71—H71A | 109.5 |
N11—C11—C1 | 113.1 (2) | C51—C71—H71B | 109.5 |
C2—C4—C5 | 115.4 (2) | H71A—C71—H71B | 109.5 |
C2—C4—H4A | 108.4 | C51—C71—H71C | 109.5 |
C5—C4—H4A | 108.4 | H71A—C71—H71C | 109.5 |
C2—C4—H4B | 108.4 | H71B—C71—H71C | 109.5 |
C5—C4—H4B | 108.4 | C53—C63—H63A | 109.5 |
H4A—C4—H4B | 107.5 | C53—C63—H63B | 109.5 |
N13—C23—C33 | 110.0 (2) | H63A—C63—H63B | 109.5 |
N13—C23—C43 | 110.8 (2) | C53—C63—H63C | 109.5 |
C33—C23—C43 | 108.2 (2) | H63A—C63—H63C | 109.5 |
N13—C23—H23 | 109.3 | H63B—C63—H63C | 109.5 |
C33—C23—H23 | 109.3 | N41—N31—N21 | 172.7 (4) |
C43—C23—H23 | 109.3 | C52—C42—C22 | 117.2 (3) |
O12—C12—N12 | 125.3 (2) | C52—C42—H42A | 108 |
O12—C12—C13 | 120.3 (2) | C22—C42—H42A | 108 |
N12—C12—C13 | 114.4 (2) | C52—C42—H42B | 108 |
N33—N23—C33 | 115.2 (3) | C22—C42—H42B | 108 |
C51—C41—C21 | 115.5 (2) | H42A—C42—H42B | 107.2 |
C51—C41—H41A | 108.4 | C51—C61—H61A | 109.5 |
C21—C41—H41A | 108.4 | C51—C61—H61B | 109.5 |
C51—C41—H41B | 108.4 | H61A—C61—H61B | 109.5 |
C21—C41—H41B | 108.4 | C51—C61—H61C | 109.5 |
H41A—C41—H41B | 107.5 | H61A—C61—H61C | 109.5 |
C41—C51—C71 | 112.7 (2) | H61B—C61—H61C | 109.5 |
C41—C51—C61 | 110.4 (2) | N22—C32—C22 | 109.1 (2) |
C71—C51—C61 | 110.0 (2) | N22—C32—H32A | 109.9 |
C41—C51—H51 | 107.8 | C22—C32—H32A | 109.9 |
C71—C51—H51 | 107.8 | N22—C32—H32B | 109.9 |
C61—C51—H51 | 107.8 | C22—C32—H32B | 109.9 |
C43—C53—C73 | 110.4 (2) | H32A—C32—H32B | 108.3 |
C43—C53—C63 | 111.9 (2) | C53—C73—H73A | 109.5 |
C73—C53—C63 | 109.5 (2) | C53—C73—H73B | 109.5 |
C43—C53—H53 | 108.3 | H73A—C73—H73B | 109.5 |
C73—C53—H53 | 108.3 | C53—C73—H73C | 109.5 |
C63—C53—H53 | 108.3 | H73A—C73—H73C | 109.5 |
N11—C21—C41 | 110.3 (2) | H73B—C73—H73C | 109.5 |
N11—C21—C31 | 107.7 (2) | C62—C52—C42 | 114.4 (3) |
C41—C21—C31 | 113.0 (2) | C62—C52—C72 | 110.2 (3) |
N11—C21—H21 | 108.5 | C42—C52—C72 | 108.8 (3) |
C41—C21—H21 | 108.5 | C62—C52—H52 | 107.7 |
C31—C21—H21 | 108.5 | C42—C52—H52 | 107.7 |
N21—C31—C21 | 111.7 (2) | C72—C52—H52 | 107.7 |
N21—C31—H31A | 109.3 | C5—C7—H7A | 109.5 |
C21—C31—H31A | 109.3 | C5—C7—H7B | 109.5 |
N21—C31—H31B | 109.3 | H7A—C7—H7B | 109.5 |
C21—C31—H31B | 109.3 | C5—C7—H7C | 109.5 |
H31A—C31—H31B | 107.9 | H7A—C7—H7C | 109.5 |
C5—C6—H6A | 109.5 | H7B—C7—H7C | 109.5 |
C5—C6—H6B | 109.5 | C52—C62—H62A | 109.5 |
H6A—C6—H6B | 109.5 | C52—C62—H62B | 109.5 |
C5—C6—H6C | 109.5 | H62A—C62—H62B | 109.5 |
H6A—C6—H6C | 109.5 | C52—C62—H62C | 109.5 |
H6B—C6—H6C | 109.5 | H62A—C62—H62C | 109.5 |
N23—C33—C23 | 110.0 (2) | H62B—C62—H62C | 109.5 |
N23—C33—H33A | 109.7 | C52—C72—H72A | 109.5 |
C23—C33—H33A | 109.7 | C52—C72—H72B | 109.5 |
N23—C33—H33B | 109.7 | H72A—C72—H72B | 109.5 |
C23—C33—H33B | 109.7 | C52—C72—H72C | 109.5 |
H33A—C33—H33B | 108.2 | H72A—C72—H72C | 109.5 |
N43—N33—N23 | 173.7 (4) | H72B—C72—H72C | 109.5 |
C53—C43—C23 | 116.6 (2) | N2—N3—N4 | 172.8 (4) |
C1—N1—C2—C4 | 132.2 (2) | C12—N12—C22—C42 | 128.4 (3) |
C2—N1—C1—O1 | −1.7 (4) | C2—C4—C5—C6 | −50.6 (3) |
C23—N13—C13—O13 | −4.1 (4) | C2—C4—C5—C7 | −173.9 (2) |
C21—N11—C11—O11 | 0.3 (4) | C4—C2—C3—N2 | −173.0 (2) |
O1—C1—C11—O11 | 165.2 (2) | N3—N2—C3—C2 | −143.6 (3) |
N1—C1—C11—O11 | −15.3 (3) | C32—C22—C42—C52 | −170.5 (3) |
O1—C1—C11—N11 | −15.0 (3) | N32—N22—C32—C22 | −167.6 (3) |
N1—C1—C11—N11 | 164.5 (2) | C42—C22—C32—N22 | −166.3 (2) |
C3—C2—C4—C5 | −177.1 (2) | C22—C42—C52—C62 | −48.0 (4) |
C13—N13—C23—C43 | 123.2 (3) | C22—C42—C52—C72 | −171.8 (3) |
C22—N12—C12—O12 | 0.2 (4) | C2—N1—C1—C11 | 178.8 (2) |
O13—C13—C12—O12 | −172.2 (2) | C1—N1—C2—C3 | −105.1 (3) |
N13—C13—C12—O12 | 6.9 (3) | N1—C2—C3—N2 | 62.8 (3) |
O13—C13—C12—N12 | 7.2 (4) | N1—C2—C4—C5 | −54.1 (3) |
N13—C13—C12—N12 | −173.7 (2) | C21—N11—C11—C1 | −179.6 (2) |
C21—C41—C51—C71 | −63.6 (3) | C11—N11—C21—C31 | −95.9 (3) |
C21—C41—C51—C61 | 172.9 (2) | N11—C21—C31—N21 | 178.0 (2) |
C11—N11—C21—C41 | 140.3 (2) | C51—C41—C21—N11 | −64.1 (3) |
C51—C41—C21—C31 | 175.2 (2) | C23—N13—C13—C12 | 176.9 (2) |
N31—N21—C31—C21 | 106.0 (3) | C12—N12—C22—C32 | −108.8 (3) |
C41—C21—C31—N21 | −59.8 (3) | N12—C22—C32—N22 | 69.4 (3) |
N33—N23—C33—C23 | −170.5 (3) | N12—C22—C42—C52 | −47.4 (4) |
C43—C23—C33—N23 | 178.0 (2) | C22—N12—C12—C13 | −179.2 (2) |
C73—C53—C43—C23 | 165.7 (2) | C13—N13—C23—C33 | −117.3 (3) |
C63—C53—C43—C23 | −72.0 (3) | N13—C23—C33—N23 | 56.8 (3) |
C33—C23—C43—C53 | 171.6 (2) | N13—C23—C43—C53 | −67.8 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N11—H11N···O12 | 0.84 (3) | 2.15 (3) | 2.893 (3) | 147 (2) |
N1—H1N···O11i | 0.84 (3) | 2.11 (3) | 2.879 (3) | 153 (2) |
N13—H13N···O1 | 0.81 (3) | 2.21 (3) | 2.948 (3) | 152 (2) |
N13—H13N···O12 | 0.81 (3) | 2.28 (3) | 2.673 (3) | 110 (2) |
N12—H12N···O13ii | 0.82 (3) | 2.23 (3) | 2.978 (3) | 152 (2) |
N1—H1N···O11 | 0.84 (3) | 2.38 (3) | 2.748 (3) | 108 (2) |
N12—H12N···O13 | 0.82 (3) | 2.38 (3) | 2.734 (4) | 107 (2) |
N11—H11N···O1 | 0.84 (3) | 2.31 (3) | 2.708 (3) | 109 (2) |
Symmetry codes: (i) −x+2, y, −z+1; (ii) −x+2, y, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C14H26N8O2 |
Mr | 338.43 |
Crystal system, space group | Monoclinic, C2 |
Temperature (K) | 150 |
a, b, c (Å) | 24.0235 (5), 7.9361 (2), 20.2167 (5) |
β (°) | 107.824 (1) |
V (Å3) | 3669.37 (15) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.25 × 0.25 × 0.12 |
Data collection | |
Diffractometer | KappaCCD diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7645, 7645, 5889 |
Rint | 0 |
(sin θ/λ)max (Å−1) | 0.640 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.054, 0.129, 1.03 |
No. of reflections | 7645 |
No. of parameters | 449 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.21, −0.29 |
Computer programs: COLLECT (Nonius BV, 1997–2000), HKL SCALEPACK (Otwinowski & Minor 1997), HKL DENZO and SCALEPACK (Otwinowski & Minor 1997), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999) and PLATON (Spek, 1999).
C2—N1—C1—C11 | 178.8 (2) | C23—N13—C13—C12 | 176.9 (2) |
C1—N1—C2—C3 | −105.1 (3) | C12—N12—C22—C32 | −108.8 (3) |
N1—C2—C3—N2 | 62.8 (3) | N12—C22—C32—N22 | 69.4 (3) |
N1—C2—C4—C5 | −54.1 (3) | N12—C22—C42—C52 | −47.4 (4) |
C21—N11—C11—C1 | −179.6 (2) | C22—N12—C12—C13 | −179.2 (2) |
C11—N11—C21—C31 | −95.9 (3) | C13—N13—C23—C33 | −117.3 (3) |
N11—C21—C31—N21 | 178.0 (2) | N13—C23—C33—N23 | 56.8 (3) |
C51—C41—C21—N11 | −64.1 (3) | N13—C23—C43—C53 | −67.8 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N11—H11N···O12 | 0.84 (3) | 2.15 (3) | 2.893 (3) | 147 (2) |
N1—H1N···O11i | 0.84 (3) | 2.11 (3) | 2.879 (3) | 153 (2) |
N13—H13N···O1 | 0.81 (3) | 2.21 (3) | 2.948 (3) | 152 (2) |
N13—H13N···O12 | 0.81 (3) | 2.28 (3) | 2.673 (3) | 110 (2) |
N12—H12N···O13ii | 0.82 (3) | 2.23 (3) | 2.978 (3) | 152 (2) |
N1—H1N···O11 | 0.84 (3) | 2.38 (3) | 2.748 (3) | 108 (2) |
N12—H12N···O13 | 0.82 (3) | 2.38 (3) | 2.734 (4) | 107 (2) |
N11—H11N···O1 | 0.84 (3) | 2.31 (3) | 2.708 (3) | 109 (2) |
Symmetry codes: (i) −x+2, y, −z+1; (ii) −x+2, y, −z+2. |
Molecule A | Molecule B | ||
C11—C1—N1—C2 (ω) | 178.8 (2) | C12—C13—N13—C23 (ω'') | 176.9 (2) |
C3—C2—N1—C1 (ϕ) | -105.1 (3) | C32—C22—N12—C12 (ϕ'') | -108.8 (3) |
N1—C2—C3—N2 (ψ) | 62.8 (3) | N12—C22—C32—N22 (ψ'') | 69.4 (3) |
N1—C2—C4—C5 (χ) | -54.1 (3) | N12—C22—C42—C52 (χ'') | -47.4 (4) |
C1—C11—N11—C21 (ω') | -179.6 (2) | C13—C12—N12—C22 (ω''') | -179.2 (2) |
C31—C21—N11—C11 (ϕ') | -95.9 (3) | C33—C23—N13—C13 (ϕ''') | -117.3 (3) |
N11—C21—C31—N21 (ψ') | 178.0 (2) | N13—C23—C33—N23 (ψ''') | 56.8 (3) |
N11—C21—C41—C51 (χ') | -64.1 (3) | N13—C23—C43—C53 (χ''') | -67.8 (3) |
The present structure determination is part of a systematic study related to hydrogen bonding and gelation properties of bis(amino acid) and bis(amino alcohol) oxalamide derivatives (Makaravić et al., 2001, 2003). A number of compounds of this class have been designed and synthesized to introduce the proton donor/acceptor functionalities required for one-dimensional or two-dimensional hydrogen-bonded assemblies in order to investigate the delicate interplay of structure, noncovalent interactions and gelating properties (Jokić et al., 1995; Perić, Makarević et al., 2001; Perić, Kojić-Prodić et al., 2001). The oxalamide moiety was selected as a good structural unit for the design of molecular solids (Coe et al., 1997; Nguyen et al., 1998). Coe et al. (1997) studied centrosymmetric oxalamide with terminal substituted carboxyl groups. In this group of compounds there are two distinctive hydrogen-bonding patterns, both generating two-dimensional β-network: (i) N—H···O hydrogen bonds between oxalamide units and O—H···O hydrogen bonds between terminal carboxyl groups (forming polymorph A) and (ii) O—H···O hydrogen bonds between oxalamide and carboxyl groups (forming polymorph B). Pattern (i) is composed of an α-network generated by hydrogen bonding within oxalamide groups that are self assembled into a β-network via hydrogen bonds between carboxyl groups, including centrosymmetric cyclic carboxylic acid dimers. The title compound, (I), served as a precursor of a novel aminoterminal oxalamide gelator; substitution of azide groups precludes hydrogen bonding at the terminal sides of the molecule. However, the oxalamide groups are available for intermolecular N—H···O hydrogen bonds generating the α-network.
In this paper the structure of (I) is presented. The ORTEP-3 (Burnett, 1996) drawing (Fig. 1) reveals two molecules, viz. A and B, in an asymmetric unit. The overall conformational differences of A and B are illustrated in Fig. 2. The (S)-leucyl residues are positioned on the same side of the central oxalamide unit with the similar conformations (Fig. 2 and Table 1). Torsion angles ω, ω', ϕ, ϕ', ψ, ψ', χ and χ' are labelled according to the literature (IUPAC-IUB Commission on Biochemical Nomenclature, http://www.chem.qmul.ac.uk/iupac/misc/ppep1.html Karle et al. 1994). The significantly different conformation is associated with ψ' of molecule A because of the unique conformation of the N21—N31—N41 azide group. Among the four azide groups, three are perpendicular to the plane of oxalamide units, whereas the N21—N31—N41 group is parallel to this plane (Table 2). The average values of bond lengths and angles of azide groups are ??1.146 (4) and 1.173 (5) Å for N—N bonds and 1.517 (4) Å for N—C bonds, with a bonding angle of 173.0 (4) °. This observation is based on the analysis of bond-geometry parameters that exceed differences larger than 3σ. The crystal packing is defined as the α-network (Coe et al., 1997) realised by the N—H···O hydrogen bonds between oxalamide groups (Table 2, Fig. 3) forming three crystallographically different dimers. Two crystallographically independent molecules, A and B, are connected by a pair of N—H···O hydrogen bonds to form a dimer of approximately digonal symmetry. The crystallographic twofold axes generate hydrogen-bonded dimers of types A···A and B···B, defined by graph-set notation as R22(10) (Bernstein et al., 1995). An inspection of the Cambridge Structural Database (version 5.24 of November 2002; Allen, 2002) using the oxalamide fragment revealed 33 structures, among which a single example of a hydrogen bonded dimer with digonal symmetry was found. The structure of N-hydroxyoxamide (Larsen, 1980) crystallizes in the space group C2/c. However, the three-dimensional hydrogen-bonded network of N-hydroxyoxamide cannot be compared with the one-dimensional network of (I). Dimers of sequence B···B···A···A···B···B··· are connected in the direction of the c axes. A ladder pattern (Fig. 3 and Table 2) formed in this way is based on intramolecular N—H···O hydrogen bonds of a pseudo-C5 arrangement typical of retropeptides and intermolecular hydrogen bonds involving chemically identical but crystallographically different amide groups. Each amide H atom acts as a double donor (three-centred or bifurcated hydrogen bond).