Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270109008877/ga3120sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270109008877/ga3120Isup2.hkl | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270109008877/ga3120IIsup3.hkl | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270109008877/ga3120IIIsup4.hkl |
CCDC references: 730109; 730110; 730111
For the preparation of compound (I), acetaldehyde (0.18 ml, 3.20 mmol) and BF3.OEt2 (0.47 ml, 3.78 mmol) were added dropwise to a solution of tert-butyl 2-(tert-butyldimethylsilyloxy)-4-(2-nitrophenyl)-1H-pyrrole-1-carboxylate (1.22 g, 2.91 mmol) in dry CH2Cl2 (30 ml) at 195 K under argon. The colour of the solution changed from yellow to light yellow. The mixture was stirred at 195 K for 1 h. The reaction mixture was quenched at 195 K with a saturated aqueous solution of NaHCO3 (20 ml) and the aqueous layer was extracted with CH2Cl2. The combined organic layers were washed with brine, dried over MgSO4 and concentrated. Purification of the residue by flash chromatography (silica gel, ethyl acetate–dichloromethane 4:6 v/v) afforded the aldol product (3) as a white solid (yield 0.53 g, 52%). Crystals suitable for X-ray analysis were otained by slow evaporation of an ether–hexane (1:1) solution.
For the preparation of compound (II), methyl 4-oxobutanoate (348 mg, 3.0 mmol) and BF3.OEt2 (0.38 ml, 2.3 mmol) were added dropwise to a solution of tert-butyl 2-(tert-butyldimethylsilyloxy)-4-(2-nitrophenyl)-1H-pyrrole-1-carboxylate (966 mg, 2.3 mmol) in dry CH2Cl2 (20 ml) at 195 K under argon. The colour of the solution changed from yellow to light yellow. The mixture was stirred at 195 K for 1 h. The reaction mixture was quenched at 195 K with a saturated aqueous solution of NaHCO3 (15 ml) and the aqueous layer was extracted with CH2Cl2. The combined organic layers were washed with brine, dried over MgSO4 and concentrated. Purification of the residue by flash chromatography (silica gel, ethyl acetate–diethyl ether 3:7 v/v) afforded the aldol product (4) as a white solid (yield 815 mg, 93%). Crystals suitable for X-ray analysis were otained by slow evaporation of an ether–hexane (1:1) solution.
For the preparation of compound (III), 4-bromobutanal (0.35 g, 2.31 mmol) and BF3.OEt2 (0.29 ml, 2.31 mmol) were added dropwise to a solution of tert-butyl 2-(tert-butyldimethylsilyloxy)-1H-pyrrole-1-carboxylate (0.68 g, 2.31 mmol) in dry CH2Cl2 (20 ml) at 195 K under argon. The colour of the solution changed from yellow to light yellow. The mixture was stirred at 195 K for 1 h. The reaction mixture was quenched at 195 K with a saturated aqueous solution of NaHCO3 (15 ml) and the aqueous layer was extracted with CH2Cl2. The combined organic layers were washed with brine, dried over MgSO4 and concentrated. Purification of the residue by flash chromatography (silica gel, ethyl acetate–dichloromethane 3:7 v/v) afforded the aldol product (5) as a white solid (yield 0.30 g, 39%). Crystals suitable for X-ray analysis were otained by slow evaporation of an ether–hexane (1:1) solution.
In compound (I), the hydroxyl H atom was located from a difference Fourier map and freely refined [O—H = 0.852 (18) Å]. For compounds (II) and (III), the hydroxyl H atoms were included in calculated positions and treated as riding [O—H = 0.84 Å and Uiso(H) = 1.5Ueq(O)]. The C-bound H atoms in all three compounds were included in calculated positions and treated as riding atoms [C—H = 0.95–1.00Å and Uiso(H) = 1.2 or 1.5Ueq(C)]. A small cusp of data is missing for structure (II): this problem is related to the image-plate diffractometer using only one azimuthal scan. A fraction of the reciprocal lattice points never intersect the Ewald sphere and so a small cusp of data is missing. This has a small effect on the precision of the structure analysis, which can be seen when comparing the s.u. values of structure (II) with those of structures (I) and (III); for example, on average, the bond distances differ by 5 s.u., whereas for structures (I) and (III) they differ by only 2 s.u.
For all compounds, data collection: X-AREA (Stoe & Cie, 2006); cell refinement: X-AREA (Stoe & Cie, 2006); data reduction: X-RED32 (Stoe & Cie, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).
C17H20N2O6 | Dx = 1.327 Mg m−3 |
Mr = 348.35 | Mo Kα radiation, λ = 0.71073 Å |
Trigonal, R3 | Cell parameters from 37232 reflections |
Hall symbol: -R 3 | θ = 1.9–29.6° |
a = 21.1117 (8) Å | µ = 0.10 mm−1 |
c = 20.3244 (9) Å | T = 173 K |
V = 7845.0 (5) Å3 | Block, pale violet |
Z = 18 | 0.45 × 0.45 × 0.45 mm |
F(000) = 3312 |
Stoe IPDS-2 diffractometer | 4041 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.089 |
Graphite monochromator | θmax = 29.3°, θmin = 1.9° |
ϕ and ω scans | h = −28→29 |
39673 measured reflections | k = −28→28 |
4718 independent reflections | l = −25→27 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.039 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.098 | w = 1/[σ2(Fo2) + (0.0345P)2 + 5.9651P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max < 0.001 |
4718 reflections | Δρmax = 0.27 e Å−3 |
235 parameters | Δρmin = −0.17 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.00059 (14) |
C17H20N2O6 | Z = 18 |
Mr = 348.35 | Mo Kα radiation |
Trigonal, R3 | µ = 0.10 mm−1 |
a = 21.1117 (8) Å | T = 173 K |
c = 20.3244 (9) Å | 0.45 × 0.45 × 0.45 mm |
V = 7845.0 (5) Å3 |
Stoe IPDS-2 diffractometer | 4041 reflections with I > 2σ(I) |
39673 measured reflections | Rint = 0.089 |
4718 independent reflections |
R[F2 > 2σ(F2)] = 0.039 | 0 restraints |
wR(F2) = 0.098 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.27 e Å−3 |
4718 reflections | Δρmin = −0.17 e Å−3 |
235 parameters |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.29424 (5) | 0.41562 (5) | 0.00122 (5) | 0.0391 (3) | |
O2 | 0.21212 (5) | 0.28894 (5) | 0.07457 (5) | 0.0480 (3) | |
O3 | 0.25771 (5) | 0.21244 (4) | 0.06812 (4) | 0.0371 (3) | |
O4 | 0.41816 (5) | 0.23954 (4) | −0.06199 (5) | 0.0372 (3) | |
O5 | 0.50360 (5) | 0.38580 (5) | 0.09835 (4) | 0.0417 (3) | |
O6 | 0.56788 (6) | 0.33232 (5) | 0.09317 (5) | 0.0447 (3) | |
N1 | 0.31770 (5) | 0.32006 (5) | 0.01879 (5) | 0.0294 (3) | |
N2 | 0.54177 (5) | 0.36699 (5) | 0.06844 (4) | 0.0295 (2) | |
C1 | 0.33427 (6) | 0.39007 (6) | −0.00134 (5) | 0.0287 (3) | |
C2 | 0.40944 (6) | 0.42536 (5) | −0.02579 (5) | 0.0278 (3) | |
C3 | 0.43615 (5) | 0.38024 (5) | −0.02026 (5) | 0.0244 (2) | |
C4 | 0.37748 (5) | 0.30600 (5) | 0.00296 (6) | 0.0270 (3) | |
C5 | 0.25675 (6) | 0.27380 (6) | 0.05644 (6) | 0.0320 (3) | |
C6 | 0.20133 (6) | 0.15371 (6) | 0.10954 (6) | 0.0353 (3) | |
C7 | 0.20589 (10) | 0.18259 (9) | 0.17826 (7) | 0.0559 (5) | |
C8 | 0.12653 (8) | 0.12481 (9) | 0.07984 (9) | 0.0595 (5) | |
C9 | 0.22464 (9) | 0.09680 (8) | 0.10738 (8) | 0.0513 (5) | |
C10 | 0.35612 (6) | 0.24733 (6) | −0.05118 (6) | 0.0342 (3) | |
C11 | 0.33351 (8) | 0.26656 (8) | −0.11510 (8) | 0.0489 (4) | |
C12 | 0.51070 (5) | 0.39876 (5) | −0.03979 (5) | 0.0234 (3) | |
C13 | 0.53620 (6) | 0.42848 (5) | −0.10190 (5) | 0.0273 (3) | |
C14 | 0.60600 (6) | 0.44736 (6) | −0.12258 (5) | 0.0305 (3) | |
C15 | 0.65207 (6) | 0.43617 (6) | −0.08213 (6) | 0.0322 (3) | |
C16 | 0.62888 (6) | 0.40740 (6) | −0.02006 (5) | 0.0286 (3) | |
C17 | 0.55966 (5) | 0.39000 (5) | −0.00005 (5) | 0.0243 (3) | |
H2 | 0.43550 | 0.47360 | −0.04310 | 0.0330* | |
H4 | 0.39390 | 0.29140 | 0.04350 | 0.0320* | |
H4O | 0.4094 (9) | 0.1984 (10) | −0.0466 (8) | 0.050 (4)* | |
H7A | 0.19070 | 0.21950 | 0.17780 | 0.0840* | |
H7B | 0.25630 | 0.20470 | 0.19420 | 0.0840* | |
H7C | 0.17350 | 0.14230 | 0.20740 | 0.0840* | |
H8A | 0.12740 | 0.11170 | 0.03370 | 0.0890* | |
H8B | 0.11250 | 0.16250 | 0.08220 | 0.0890* | |
H8C | 0.09100 | 0.08140 | 0.10420 | 0.0890* | |
H9A | 0.22470 | 0.08200 | 0.06170 | 0.0770* | |
H9B | 0.27390 | 0.11730 | 0.12580 | 0.0770* | |
H9C | 0.19040 | 0.05410 | 0.13320 | 0.0770* | |
H10 | 0.31500 | 0.19980 | −0.03470 | 0.0410* | |
H11A | 0.37550 | 0.30970 | −0.13440 | 0.0730* | |
H11B | 0.31630 | 0.22530 | −0.14570 | 0.0730* | |
H11C | 0.29400 | 0.27720 | −0.10680 | 0.0730* | |
H13 | 0.50510 | 0.43600 | −0.13070 | 0.0330* | |
H14 | 0.62230 | 0.46820 | −0.16500 | 0.0370* | |
H15 | 0.69950 | 0.44820 | −0.09700 | 0.0390* | |
H16 | 0.66010 | 0.39970 | 0.00840 | 0.0340* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0436 (5) | 0.0381 (4) | 0.0497 (5) | 0.0309 (4) | 0.0099 (4) | 0.0058 (4) |
O2 | 0.0417 (5) | 0.0501 (5) | 0.0662 (6) | 0.0334 (5) | 0.0241 (4) | 0.0187 (5) |
O3 | 0.0361 (4) | 0.0315 (4) | 0.0479 (5) | 0.0200 (3) | 0.0182 (4) | 0.0127 (3) |
O4 | 0.0361 (4) | 0.0246 (4) | 0.0577 (5) | 0.0203 (3) | 0.0199 (4) | 0.0106 (4) |
O5 | 0.0480 (5) | 0.0603 (6) | 0.0284 (4) | 0.0358 (5) | 0.0067 (3) | −0.0001 (4) |
O6 | 0.0559 (6) | 0.0532 (5) | 0.0383 (5) | 0.0373 (5) | 0.0082 (4) | 0.0166 (4) |
N1 | 0.0285 (4) | 0.0258 (4) | 0.0390 (5) | 0.0174 (4) | 0.0083 (4) | 0.0037 (4) |
N2 | 0.0314 (4) | 0.0307 (4) | 0.0272 (4) | 0.0162 (4) | 0.0024 (3) | 0.0024 (3) |
C1 | 0.0328 (5) | 0.0266 (5) | 0.0321 (5) | 0.0190 (4) | 0.0024 (4) | −0.0009 (4) |
C2 | 0.0307 (5) | 0.0217 (4) | 0.0323 (5) | 0.0140 (4) | 0.0007 (4) | −0.0005 (4) |
C3 | 0.0256 (4) | 0.0212 (4) | 0.0262 (4) | 0.0115 (4) | −0.0001 (4) | −0.0016 (3) |
C4 | 0.0238 (4) | 0.0229 (4) | 0.0370 (5) | 0.0138 (4) | 0.0064 (4) | 0.0030 (4) |
C5 | 0.0299 (5) | 0.0327 (5) | 0.0377 (6) | 0.0189 (4) | 0.0068 (4) | 0.0047 (4) |
C6 | 0.0348 (6) | 0.0319 (5) | 0.0363 (6) | 0.0144 (5) | 0.0112 (4) | 0.0085 (4) |
C7 | 0.0747 (11) | 0.0519 (8) | 0.0388 (7) | 0.0299 (8) | 0.0134 (7) | 0.0043 (6) |
C8 | 0.0397 (7) | 0.0500 (8) | 0.0744 (11) | 0.0117 (6) | −0.0006 (7) | 0.0060 (7) |
C9 | 0.0609 (9) | 0.0384 (7) | 0.0585 (9) | 0.0278 (6) | 0.0215 (7) | 0.0177 (6) |
C10 | 0.0249 (5) | 0.0208 (5) | 0.0546 (7) | 0.0098 (4) | 0.0100 (4) | −0.0040 (4) |
C11 | 0.0381 (6) | 0.0556 (8) | 0.0576 (8) | 0.0269 (6) | −0.0162 (6) | −0.0285 (7) |
C12 | 0.0242 (4) | 0.0170 (4) | 0.0269 (5) | 0.0088 (3) | 0.0010 (3) | −0.0014 (3) |
C13 | 0.0293 (5) | 0.0218 (4) | 0.0263 (5) | 0.0095 (4) | −0.0017 (4) | 0.0001 (4) |
C14 | 0.0314 (5) | 0.0245 (5) | 0.0266 (5) | 0.0072 (4) | 0.0046 (4) | 0.0009 (4) |
C15 | 0.0248 (5) | 0.0310 (5) | 0.0344 (5) | 0.0091 (4) | 0.0061 (4) | 0.0006 (4) |
C16 | 0.0257 (5) | 0.0272 (5) | 0.0320 (5) | 0.0126 (4) | 0.0007 (4) | −0.0002 (4) |
C17 | 0.0265 (5) | 0.0204 (4) | 0.0249 (4) | 0.0109 (4) | 0.0024 (3) | 0.0003 (3) |
O1—C1 | 1.2098 (18) | C13—C14 | 1.3855 (19) |
O2—C5 | 1.1945 (18) | C14—C15 | 1.3811 (19) |
O3—C5 | 1.3271 (15) | C15—C16 | 1.3794 (16) |
O3—C6 | 1.4788 (15) | C16—C17 | 1.3781 (18) |
O4—C10 | 1.4164 (18) | C2—H2 | 0.9500 |
O5—N2 | 1.2234 (15) | C4—H4 | 1.0000 |
O6—N2 | 1.2230 (16) | C7—H7A | 0.9800 |
O4—H4O | 0.852 (18) | C7—H7B | 0.9800 |
N1—C1 | 1.3990 (15) | C7—H7C | 0.9800 |
N1—C5 | 1.3923 (16) | C8—H8A | 0.9800 |
N1—C4 | 1.4694 (17) | C8—H8B | 0.9800 |
N2—C17 | 1.4604 (13) | C8—H8C | 0.9800 |
C1—C2 | 1.4622 (18) | C9—H9A | 0.9800 |
C2—C3 | 1.3323 (16) | C9—H9B | 0.9800 |
C3—C12 | 1.4738 (16) | C9—H9C | 0.9800 |
C3—C4 | 1.5074 (14) | C10—H10 | 1.0000 |
C4—C10 | 1.5459 (16) | C11—H11A | 0.9800 |
C6—C8 | 1.506 (2) | C11—H11B | 0.9800 |
C6—C9 | 1.510 (2) | C11—H11C | 0.9800 |
C6—C7 | 1.5077 (19) | C13—H13 | 0.9500 |
C10—C11 | 1.508 (2) | C14—H14 | 0.9500 |
C12—C17 | 1.3950 (16) | C15—H15 | 0.9500 |
C12—C13 | 1.3926 (14) | C16—H16 | 0.9500 |
C5—O3—C6 | 121.44 (11) | C1—C2—H2 | 125.00 |
C10—O4—H4O | 108.6 (14) | C3—C2—H2 | 125.00 |
C1—N1—C5 | 123.85 (11) | N1—C4—H4 | 110.00 |
C4—N1—C5 | 124.37 (10) | C3—C4—H4 | 110.00 |
C1—N1—C4 | 111.29 (10) | C10—C4—H4 | 110.00 |
O5—N2—O6 | 123.86 (10) | C6—C7—H7A | 109.00 |
O6—N2—C17 | 118.15 (10) | C6—C7—H7B | 109.00 |
O5—N2—C17 | 117.93 (10) | C6—C7—H7C | 109.00 |
O1—C1—N1 | 126.66 (12) | H7A—C7—H7B | 110.00 |
N1—C1—C2 | 105.79 (11) | H7A—C7—H7C | 109.00 |
O1—C1—C2 | 127.56 (10) | H7B—C7—H7C | 110.00 |
C1—C2—C3 | 110.28 (9) | C6—C8—H8A | 110.00 |
C2—C3—C12 | 124.42 (9) | C6—C8—H8B | 109.00 |
C4—C3—C12 | 124.99 (9) | C6—C8—H8C | 109.00 |
C2—C3—C4 | 110.39 (10) | H8A—C8—H8B | 109.00 |
N1—C4—C10 | 112.45 (10) | H8A—C8—H8C | 109.00 |
C3—C4—C10 | 111.66 (10) | H8B—C8—H8C | 110.00 |
N1—C4—C3 | 101.58 (8) | C6—C9—H9A | 110.00 |
O2—C5—N1 | 123.91 (11) | C6—C9—H9B | 110.00 |
O3—C5—N1 | 108.86 (11) | C6—C9—H9C | 109.00 |
O2—C5—O3 | 127.24 (12) | H9A—C9—H9B | 109.00 |
O3—C6—C7 | 109.05 (10) | H9A—C9—H9C | 109.00 |
O3—C6—C9 | 101.81 (11) | H9B—C9—H9C | 110.00 |
C7—C6—C8 | 112.16 (14) | O4—C10—H10 | 109.00 |
O3—C6—C8 | 110.67 (11) | C4—C10—H10 | 109.00 |
C8—C6—C9 | 111.04 (12) | C11—C10—H10 | 109.00 |
C7—C6—C9 | 111.62 (13) | C10—C11—H11A | 109.00 |
O4—C10—C11 | 109.46 (11) | C10—C11—H11B | 110.00 |
C4—C10—C11 | 113.72 (10) | C10—C11—H11C | 109.00 |
O4—C10—C4 | 106.69 (10) | H11A—C11—H11B | 109.00 |
C3—C12—C17 | 124.93 (9) | H11A—C11—H11C | 109.00 |
C13—C12—C17 | 116.07 (11) | H11B—C11—H11C | 109.00 |
C3—C12—C13 | 118.99 (10) | C12—C13—H13 | 119.00 |
C12—C13—C14 | 121.37 (11) | C14—C13—H13 | 119.00 |
C13—C14—C15 | 120.59 (10) | C13—C14—H14 | 120.00 |
C14—C15—C16 | 119.64 (13) | C15—C14—H14 | 120.00 |
C15—C16—C17 | 118.87 (12) | C14—C15—H15 | 120.00 |
N2—C17—C16 | 115.68 (10) | C16—C15—H15 | 120.00 |
C12—C17—C16 | 123.44 (10) | C15—C16—H16 | 121.00 |
N2—C17—C12 | 120.69 (10) | C17—C16—H16 | 121.00 |
C6—O3—C5—O2 | −2.40 (19) | C1—C2—C3—C12 | −179.43 (9) |
C6—O3—C5—N1 | 177.35 (10) | C2—C3—C4—N1 | −8.07 (12) |
C5—O3—C6—C7 | −62.67 (16) | C2—C3—C4—C10 | 111.98 (11) |
C5—O3—C6—C8 | 61.16 (14) | C12—C3—C4—N1 | 176.97 (10) |
C5—O3—C6—C9 | 179.26 (11) | C12—C3—C4—C10 | −62.99 (14) |
C4—N1—C1—O1 | 175.08 (11) | C2—C3—C12—C13 | −49.77 (14) |
C4—N1—C1—C2 | −4.97 (12) | C2—C3—C12—C17 | 129.10 (11) |
C5—N1—C1—O1 | −12.66 (19) | C4—C3—C12—C13 | 124.51 (11) |
C5—N1—C1—C2 | 167.29 (10) | C4—C3—C12—C17 | −56.63 (15) |
C1—N1—C4—C3 | 7.80 (12) | N1—C4—C10—O4 | 179.54 (9) |
C1—N1—C4—C10 | −111.70 (10) | N1—C4—C10—C11 | 58.76 (14) |
C5—N1—C4—C3 | −164.42 (10) | C3—C4—C10—O4 | 66.10 (12) |
C5—N1—C4—C10 | 76.09 (14) | C3—C4—C10—C11 | −54.68 (15) |
C1—N1—C5—O2 | 0.98 (19) | C3—C12—C13—C14 | 179.54 (9) |
C1—N1—C5—O3 | −178.78 (10) | C17—C12—C13—C14 | 0.57 (14) |
C4—N1—C5—O2 | 172.23 (12) | C3—C12—C17—N2 | −5.69 (14) |
C4—N1—C5—O3 | −7.52 (16) | C3—C12—C17—C16 | 179.51 (10) |
O5—N2—C17—C12 | −31.70 (14) | C13—C12—C17—N2 | 173.20 (9) |
O5—N2—C17—C16 | 143.49 (11) | C13—C12—C17—C16 | −1.60 (14) |
O6—N2—C17—C12 | 150.83 (10) | C12—C13—C14—C15 | 0.89 (16) |
O6—N2—C17—C16 | −33.99 (14) | C13—C14—C15—C16 | −1.41 (17) |
O1—C1—C2—C3 | 179.47 (11) | C14—C15—C16—C17 | 0.42 (16) |
N1—C1—C2—C3 | −0.48 (12) | C15—C16—C17—N2 | −173.92 (9) |
C1—C2—C3—C4 | 5.58 (12) | C15—C16—C17—C12 | 1.12 (16) |
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H4O···O1i | 0.852 (18) | 1.930 (19) | 2.7600 (15) | 164.3 (19) |
Symmetry code: (i) y, −x+y, −z. |
C20H24N2O8 | F(000) = 1776 |
Mr = 420.41 | Dx = 1.365 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 14223 reflections |
a = 9.1439 (7) Å | θ = 1.4–26.0° |
b = 20.7113 (18) Å | µ = 0.11 mm−1 |
c = 21.598 (2) Å | T = 153 K |
V = 4090.3 (6) Å3 | Plate, colourless |
Z = 8 | 0.50 × 0.45 × 0.10 mm |
Stoe IPDS-2 diffractometer | 2605 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.078 |
Graphite monochromator | θmax = 26.0°, θmin = 1.9° |
rotation method scans | h = −8→11 |
16666 measured reflections | k = −17→25 |
3856 independent reflections | l = −26→26 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.044 | H-atom parameters constrained |
wR(F2) = 0.110 | w = 1/[σ2(Fo2) + (0.0615P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.95 | (Δ/σ)max = 0.001 |
3856 reflections | Δρmax = 0.18 e Å−3 |
277 parameters | Δρmin = −0.22 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0048 (6) |
C20H24N2O8 | V = 4090.3 (6) Å3 |
Mr = 420.41 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 9.1439 (7) Å | µ = 0.11 mm−1 |
b = 20.7113 (18) Å | T = 153 K |
c = 21.598 (2) Å | 0.50 × 0.45 × 0.10 mm |
Stoe IPDS-2 diffractometer | 2605 reflections with I > 2σ(I) |
16666 measured reflections | Rint = 0.078 |
3856 independent reflections |
R[F2 > 2σ(F2)] = 0.044 | 0 restraints |
wR(F2) = 0.110 | H-atom parameters constrained |
S = 0.95 | Δρmax = 0.18 e Å−3 |
3856 reflections | Δρmin = −0.22 e Å−3 |
277 parameters |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.82338 (16) | 1.04916 (7) | 1.03743 (5) | 0.0398 (4) | |
O2 | 0.98587 (16) | 1.10030 (7) | 0.94111 (5) | 0.0377 (4) | |
O3 | 0.95859 (15) | 1.04336 (7) | 0.85188 (5) | 0.0355 (4) | |
O4 | 0.94241 (16) | 0.86269 (7) | 0.92957 (5) | 0.0381 (4) | |
O5 | 1.0951 (2) | 0.73288 (9) | 0.85235 (9) | 0.0652 (7) | |
O6 | 0.85174 (18) | 0.72804 (8) | 0.85811 (7) | 0.0503 (5) | |
O7 | 0.46800 (17) | 0.97641 (8) | 0.87432 (6) | 0.0426 (5) | |
O8 | 0.3128 (2) | 0.91739 (10) | 0.82448 (6) | 0.0618 (7) | |
N1 | 0.84959 (18) | 1.00760 (8) | 0.93705 (6) | 0.0314 (5) | |
N2 | 0.40953 (19) | 0.92421 (10) | 0.86356 (7) | 0.0405 (6) | |
C1 | 0.7897 (2) | 1.01036 (10) | 0.99720 (7) | 0.0330 (6) | |
C2 | 0.6820 (2) | 0.95899 (10) | 1.00009 (7) | 0.0345 (6) | |
C3 | 0.6746 (2) | 0.92758 (10) | 0.94629 (7) | 0.0321 (6) | |
C4 | 0.7851 (2) | 0.95408 (9) | 0.90103 (7) | 0.0309 (5) | |
C5 | 0.9383 (2) | 1.05520 (10) | 0.91219 (7) | 0.0308 (6) | |
C6 | 1.0587 (2) | 1.08406 (10) | 0.81389 (7) | 0.0354 (6) | |
C7 | 0.9866 (3) | 1.14807 (11) | 0.80216 (9) | 0.0455 (7) | |
C8 | 1.2068 (2) | 1.08975 (12) | 0.84463 (9) | 0.0428 (7) | |
C9 | 1.0704 (3) | 1.04371 (12) | 0.75502 (8) | 0.0459 (7) | |
C10 | 0.9001 (2) | 0.90391 (10) | 0.88007 (7) | 0.0343 (6) | |
C11 | 0.8398 (3) | 0.86263 (11) | 0.82758 (8) | 0.0404 (7) | |
C12 | 0.9515 (3) | 0.81462 (11) | 0.80205 (9) | 0.0460 (7) | |
C13 | 0.9772 (3) | 0.75551 (12) | 0.84067 (10) | 0.0459 (7) | |
C14 | 0.8654 (3) | 0.67016 (13) | 0.89480 (11) | 0.0604 (9) | |
C15 | 0.5813 (2) | 0.87049 (10) | 0.93627 (7) | 0.0347 (6) | |
C16 | 0.6175 (3) | 0.81437 (11) | 0.96806 (9) | 0.0439 (7) | |
C17 | 0.5335 (3) | 0.75894 (12) | 0.96383 (10) | 0.0541 (8) | |
C18 | 0.4101 (3) | 0.75838 (13) | 0.92703 (10) | 0.0546 (8) | |
C19 | 0.3711 (3) | 0.81283 (12) | 0.89444 (9) | 0.0483 (7) | |
C20 | 0.4561 (2) | 0.86762 (10) | 0.89889 (8) | 0.0367 (6) | |
H2 | 0.62450 | 0.94910 | 1.03550 | 0.0410* | |
H4 | 0.73330 | 0.97180 | 0.86400 | 0.0370* | |
H4O | 1.00180 | 0.88220 | 0.95260 | 0.0570* | |
H7A | 0.89070 | 1.14110 | 0.78300 | 0.0680* | |
H7B | 1.04790 | 1.17380 | 0.77430 | 0.0680* | |
H7C | 0.97420 | 1.17110 | 0.84150 | 0.0680* | |
H8A | 1.19770 | 1.11540 | 0.88250 | 0.0640* | |
H8B | 1.27540 | 1.11090 | 0.81630 | 0.0640* | |
H8C | 1.24320 | 1.04660 | 0.85500 | 0.0640* | |
H9A | 1.11600 | 1.00210 | 0.76470 | 0.0690* | |
H9B | 1.13020 | 1.06670 | 0.72450 | 0.0690* | |
H9C | 0.97240 | 1.03640 | 0.73800 | 0.0690* | |
H10 | 0.98860 | 0.92740 | 0.86480 | 0.0410* | |
H11A | 0.80700 | 0.89130 | 0.79360 | 0.0480* | |
H11B | 0.75340 | 0.83860 | 0.84280 | 0.0480* | |
H12A | 0.91880 | 0.80070 | 0.76040 | 0.0550* | |
H12B | 1.04600 | 0.83730 | 0.79680 | 0.0550* | |
H14A | 0.91600 | 0.63690 | 0.87070 | 0.0910* | |
H14B | 0.76790 | 0.65460 | 0.90630 | 0.0910* | |
H14C | 0.92170 | 0.67960 | 0.93230 | 0.0910* | |
H16 | 0.70240 | 0.81400 | 0.99340 | 0.0530* | |
H17 | 0.56080 | 0.72130 | 0.98620 | 0.0650* | |
H18 | 0.35210 | 0.72040 | 0.92420 | 0.0650* | |
H19 | 0.28620 | 0.81270 | 0.86910 | 0.0580* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0431 (8) | 0.0422 (8) | 0.0341 (6) | −0.0070 (8) | 0.0024 (5) | −0.0091 (6) |
O2 | 0.0461 (8) | 0.0322 (8) | 0.0348 (6) | −0.0067 (7) | −0.0004 (5) | −0.0041 (5) |
O3 | 0.0435 (8) | 0.0348 (8) | 0.0283 (5) | −0.0078 (7) | 0.0027 (5) | −0.0013 (5) |
O4 | 0.0429 (9) | 0.0323 (8) | 0.0390 (6) | 0.0015 (7) | −0.0080 (5) | −0.0012 (5) |
O5 | 0.0419 (10) | 0.0490 (12) | 0.1047 (13) | 0.0032 (9) | −0.0081 (9) | −0.0138 (9) |
O6 | 0.0428 (9) | 0.0463 (10) | 0.0618 (9) | −0.0045 (8) | −0.0055 (7) | −0.0016 (7) |
O7 | 0.0392 (9) | 0.0437 (10) | 0.0448 (7) | 0.0001 (8) | −0.0008 (6) | 0.0071 (6) |
O8 | 0.0570 (11) | 0.0812 (14) | 0.0473 (8) | 0.0047 (10) | −0.0222 (7) | −0.0111 (8) |
N1 | 0.0341 (9) | 0.0306 (9) | 0.0295 (7) | −0.0022 (8) | 0.0010 (6) | −0.0024 (6) |
N2 | 0.0369 (10) | 0.0516 (12) | 0.0330 (7) | 0.0008 (10) | −0.0002 (7) | −0.0043 (7) |
C1 | 0.0338 (11) | 0.0356 (11) | 0.0295 (8) | 0.0016 (9) | −0.0003 (7) | −0.0011 (7) |
C2 | 0.0376 (11) | 0.0352 (11) | 0.0307 (8) | −0.0043 (10) | 0.0017 (7) | −0.0001 (7) |
C3 | 0.0339 (11) | 0.0298 (11) | 0.0325 (8) | 0.0007 (9) | −0.0026 (7) | 0.0024 (7) |
C4 | 0.0360 (11) | 0.0273 (10) | 0.0294 (7) | −0.0012 (9) | −0.0018 (7) | −0.0014 (7) |
C5 | 0.0318 (10) | 0.0298 (11) | 0.0309 (8) | −0.0002 (9) | −0.0009 (7) | −0.0004 (7) |
C6 | 0.0401 (12) | 0.0348 (12) | 0.0314 (8) | −0.0047 (10) | 0.0033 (7) | 0.0026 (7) |
C7 | 0.0577 (14) | 0.0386 (13) | 0.0402 (9) | −0.0028 (11) | −0.0070 (9) | 0.0063 (8) |
C8 | 0.0375 (12) | 0.0491 (14) | 0.0419 (9) | −0.0042 (11) | 0.0032 (8) | 0.0002 (9) |
C9 | 0.0576 (14) | 0.0474 (14) | 0.0327 (8) | −0.0067 (12) | 0.0063 (9) | −0.0035 (8) |
C10 | 0.0366 (11) | 0.0326 (11) | 0.0336 (8) | 0.0006 (10) | −0.0007 (7) | −0.0004 (7) |
C11 | 0.0462 (13) | 0.0401 (13) | 0.0348 (8) | 0.0002 (11) | −0.0010 (8) | −0.0077 (8) |
C12 | 0.0509 (14) | 0.0398 (13) | 0.0474 (10) | −0.0016 (11) | 0.0075 (9) | −0.0140 (9) |
C13 | 0.0433 (13) | 0.0411 (13) | 0.0534 (11) | −0.0016 (12) | −0.0026 (9) | −0.0195 (9) |
C14 | 0.0652 (18) | 0.0479 (16) | 0.0682 (14) | −0.0051 (14) | −0.0135 (12) | 0.0034 (11) |
C15 | 0.0385 (11) | 0.0339 (11) | 0.0317 (8) | −0.0052 (10) | 0.0045 (7) | −0.0005 (7) |
C16 | 0.0511 (13) | 0.0362 (12) | 0.0445 (10) | −0.0023 (11) | 0.0026 (9) | 0.0039 (8) |
C17 | 0.0759 (18) | 0.0324 (12) | 0.0540 (11) | −0.0052 (13) | 0.0191 (12) | 0.0040 (9) |
C18 | 0.0618 (16) | 0.0425 (14) | 0.0594 (12) | −0.0201 (13) | 0.0246 (12) | −0.0144 (11) |
C19 | 0.0454 (13) | 0.0522 (15) | 0.0473 (10) | −0.0157 (12) | 0.0101 (9) | −0.0156 (10) |
C20 | 0.0408 (12) | 0.0350 (12) | 0.0342 (8) | −0.0029 (10) | 0.0039 (8) | −0.0051 (8) |
O1—C1 | 1.223 (2) | C16—C17 | 1.384 (4) |
O2—C5 | 1.205 (2) | C17—C18 | 1.380 (4) |
O3—C5 | 1.3384 (19) | C18—C19 | 1.376 (3) |
O3—C6 | 1.491 (2) | C19—C20 | 1.379 (3) |
O4—C10 | 1.422 (2) | C2—H2 | 0.9500 |
O5—C13 | 1.202 (3) | C4—H4 | 1.0000 |
O6—C13 | 1.335 (3) | C7—H7A | 0.9800 |
O6—C14 | 1.442 (3) | C7—H7B | 0.9800 |
O7—N2 | 1.228 (3) | C7—H7C | 0.9800 |
O8—N2 | 1.231 (2) | C8—H8A | 0.9800 |
O4—H4O | 0.8400 | C8—H8B | 0.9800 |
N1—C4 | 1.477 (2) | C8—H8C | 0.9800 |
N1—C5 | 1.385 (3) | C9—H9A | 0.9800 |
N1—C1 | 1.411 (2) | C9—H9B | 0.9800 |
N2—C20 | 1.462 (3) | C9—H9C | 0.9800 |
C1—C2 | 1.451 (3) | C10—H10 | 1.0000 |
C2—C3 | 1.333 (2) | C11—H11A | 0.9900 |
C3—C15 | 1.474 (3) | C11—H11B | 0.9900 |
C3—C4 | 1.509 (2) | C12—H12A | 0.9900 |
C4—C10 | 1.546 (3) | C12—H12B | 0.9900 |
C6—C7 | 1.502 (3) | C14—H14A | 0.9800 |
C6—C8 | 1.513 (3) | C14—H14B | 0.9800 |
C6—C9 | 1.525 (3) | C14—H14C | 0.9800 |
C10—C11 | 1.523 (3) | C16—H16 | 0.9500 |
C11—C12 | 1.528 (3) | C17—H17 | 0.9500 |
C12—C13 | 1.500 (3) | C18—H18 | 0.9500 |
C15—C20 | 1.402 (2) | C19—H19 | 0.9500 |
C15—C16 | 1.390 (3) | ||
C5—O3—C6 | 121.15 (14) | N1—C4—H4 | 110.00 |
C13—O6—C14 | 115.78 (19) | C3—C4—H4 | 110.00 |
C10—O4—H4O | 109.00 | C10—C4—H4 | 110.00 |
C1—N1—C4 | 111.13 (15) | C6—C7—H7A | 110.00 |
C1—N1—C5 | 123.74 (16) | C6—C7—H7B | 109.00 |
C4—N1—C5 | 124.32 (13) | C6—C7—H7C | 109.00 |
O7—N2—O8 | 122.9 (2) | H7A—C7—H7B | 109.00 |
O7—N2—C20 | 118.69 (16) | H7A—C7—H7C | 110.00 |
O8—N2—C20 | 118.38 (19) | H7B—C7—H7C | 109.00 |
O1—C1—C2 | 128.47 (15) | C6—C8—H8A | 109.00 |
N1—C1—C2 | 105.86 (15) | C6—C8—H8B | 110.00 |
O1—C1—N1 | 125.67 (17) | C6—C8—H8C | 109.00 |
C1—C2—C3 | 110.77 (15) | H8A—C8—H8B | 109.00 |
C2—C3—C4 | 110.67 (17) | H8A—C8—H8C | 109.00 |
C2—C3—C15 | 123.28 (16) | H8B—C8—H8C | 109.00 |
C4—C3—C15 | 125.74 (14) | C6—C9—H9A | 110.00 |
N1—C4—C10 | 112.77 (15) | C6—C9—H9B | 109.00 |
C3—C4—C10 | 113.62 (15) | C6—C9—H9C | 109.00 |
N1—C4—C3 | 101.48 (13) | H9A—C9—H9B | 109.00 |
O2—C5—O3 | 126.62 (17) | H9A—C9—H9C | 109.00 |
O2—C5—N1 | 124.21 (15) | H9B—C9—H9C | 109.00 |
O3—C5—N1 | 109.15 (16) | O4—C10—H10 | 109.00 |
O3—C6—C7 | 108.81 (16) | C4—C10—H10 | 109.00 |
O3—C6—C8 | 110.62 (14) | C11—C10—H10 | 109.00 |
C7—C6—C8 | 113.46 (19) | C10—C11—H11A | 109.00 |
C7—C6—C9 | 111.95 (15) | C10—C11—H11B | 109.00 |
C8—C6—C9 | 110.23 (17) | C12—C11—H11A | 109.00 |
O3—C6—C9 | 101.08 (16) | C12—C11—H11B | 109.00 |
O4—C10—C11 | 108.73 (16) | H11A—C11—H11B | 108.00 |
C4—C10—C11 | 110.42 (16) | C11—C12—H12A | 108.00 |
O4—C10—C4 | 111.62 (13) | C11—C12—H12B | 108.00 |
C10—C11—C12 | 113.1 (2) | C13—C12—H12A | 108.00 |
C11—C12—C13 | 115.79 (18) | C13—C12—H12B | 108.00 |
O5—C13—C12 | 125.1 (2) | H12A—C12—H12B | 107.00 |
O6—C13—C12 | 111.7 (2) | O6—C14—H14A | 109.00 |
O5—C13—O6 | 123.0 (2) | O6—C14—H14B | 109.00 |
C3—C15—C20 | 126.24 (18) | O6—C14—H14C | 110.00 |
C16—C15—C20 | 116.32 (19) | H14A—C14—H14B | 109.00 |
C3—C15—C16 | 117.42 (17) | H14A—C14—H14C | 109.00 |
C15—C16—C17 | 121.9 (2) | H14B—C14—H14C | 110.00 |
C16—C17—C18 | 119.9 (2) | C15—C16—H16 | 119.00 |
C17—C18—C19 | 120.0 (2) | C17—C16—H16 | 119.00 |
C18—C19—C20 | 119.5 (2) | C16—C17—H17 | 120.00 |
N2—C20—C19 | 117.34 (17) | C18—C17—H17 | 120.00 |
C15—C20—C19 | 122.36 (19) | C17—C18—H18 | 120.00 |
N2—C20—C15 | 120.29 (18) | C19—C18—H18 | 120.00 |
C1—C2—H2 | 125.00 | C18—C19—H19 | 120.00 |
C3—C2—H2 | 125.00 | C20—C19—H19 | 120.00 |
C6—O3—C5—O2 | 5.9 (3) | C2—C3—C4—C10 | 118.35 (18) |
C6—O3—C5—N1 | −175.48 (15) | C15—C3—C4—N1 | −176.71 (17) |
C5—O3—C6—C7 | −73.9 (2) | C15—C3—C4—C10 | −55.4 (2) |
C5—O3—C6—C8 | 51.4 (2) | C2—C3—C15—C16 | −67.2 (3) |
C5—O3—C6—C9 | 168.17 (17) | C2—C3—C15—C20 | 110.8 (2) |
C14—O6—C13—O5 | 2.7 (3) | C4—C3—C15—C16 | 105.8 (2) |
C14—O6—C13—C12 | 179.15 (18) | C4—C3—C15—C20 | −76.2 (3) |
C4—N1—C1—O1 | 179.15 (18) | N1—C4—C10—O4 | 76.74 (18) |
C4—N1—C1—C2 | −1.4 (2) | N1—C4—C10—C11 | −162.19 (15) |
C5—N1—C1—O1 | −10.8 (3) | C3—C4—C10—O4 | −38.0 (2) |
C5—N1—C1—C2 | 168.65 (17) | C3—C4—C10—C11 | 83.03 (18) |
C1—N1—C4—C3 | 2.58 (19) | O4—C10—C11—C12 | −60.7 (2) |
C1—N1—C4—C10 | −119.33 (16) | C4—C10—C11—C12 | 176.57 (16) |
C5—N1—C4—C3 | −167.39 (17) | C10—C11—C12—C13 | 77.2 (3) |
C5—N1—C4—C10 | 70.7 (2) | C11—C12—C13—O5 | −135.7 (3) |
C1—N1—C5—O2 | 8.1 (3) | C11—C12—C13—O6 | 48.0 (3) |
C1—N1—C5—O3 | −170.64 (16) | C3—C15—C16—C17 | 177.31 (19) |
C4—N1—C5—O2 | 176.79 (18) | C20—C15—C16—C17 | −0.9 (3) |
C4—N1—C5—O3 | −1.9 (2) | C3—C15—C20—N2 | 2.1 (3) |
O7—N2—C20—C15 | −10.9 (3) | C3—C15—C20—C19 | −176.86 (18) |
O7—N2—C20—C19 | 168.10 (18) | C16—C15—C20—N2 | −179.86 (17) |
O8—N2—C20—C15 | 169.43 (17) | C16—C15—C20—C19 | 1.2 (3) |
O8—N2—C20—C19 | −11.6 (3) | C15—C16—C17—C18 | 0.2 (3) |
O1—C1—C2—C3 | 178.8 (2) | C16—C17—C18—C19 | 0.2 (4) |
N1—C1—C2—C3 | −0.6 (2) | C17—C18—C19—C20 | 0.0 (3) |
C1—C2—C3—C4 | 2.3 (2) | C18—C19—C20—N2 | −179.74 (19) |
C1—C2—C3—C15 | 176.26 (17) | C18—C19—C20—C15 | −0.8 (3) |
C2—C3—C4—N1 | −3.0 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H4O···O1i | 0.84 | 2.15 | 2.903 (2) | 149 |
O4—H4O···O2i | 0.84 | 2.33 | 2.9696 (16) | 134 |
Symmetry code: (i) −x+2, −y+2, −z+2. |
C13H20BrNO4 | Z = 2 |
Mr = 334.21 | F(000) = 344 |
Triclinic, P1 | Dx = 1.543 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.8340 (9) Å | Cell parameters from 12982 reflections |
b = 9.0750 (9) Å | θ = 2.2–29.7° |
c = 10.7283 (10) Å | µ = 2.87 mm−1 |
α = 104.176 (7)° | T = 173 K |
β = 113.759 (7)° | Block, colourless |
γ = 101.367 (8)° | 0.50 × 0.50 × 0.50 mm |
V = 719.57 (12) Å3 |
Stoe IPDS-2 diffractometer | 3862 independent reflections |
Radiation source: fine-focus sealed tube | 3587 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.031 |
Detector resolution: 0.81Å pixels mm-1 | θmax = 29.2°, θmin = 2.2° |
ϕ and ω scans | h = −12→12 |
Absorption correction: multi-scan (MULscanABS in PLATON; Spek, 2009) | k = −10→12 |
Tmin = 0.307, Tmax = 0.472 | l = −14→14 |
9956 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.027 | H-atom parameters constrained |
wR(F2) = 0.066 | w = 1/[σ2(Fo2) + (0.0236P)2 + 0.4857P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max = 0.003 |
3862 reflections | Δρmax = 0.43 e Å−3 |
177 parameters | Δρmin = −0.78 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.012 (2) |
C13H20BrNO4 | γ = 101.367 (8)° |
Mr = 334.21 | V = 719.57 (12) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.8340 (9) Å | Mo Kα radiation |
b = 9.0750 (9) Å | µ = 2.87 mm−1 |
c = 10.7283 (10) Å | T = 173 K |
α = 104.176 (7)° | 0.50 × 0.50 × 0.50 mm |
β = 113.759 (7)° |
Stoe IPDS-2 diffractometer | 3862 independent reflections |
Absorption correction: multi-scan (MULscanABS in PLATON; Spek, 2009) | 3587 reflections with I > 2σ(I) |
Tmin = 0.307, Tmax = 0.472 | Rint = 0.031 |
9956 measured reflections |
R[F2 > 2σ(F2)] = 0.027 | 0 restraints |
wR(F2) = 0.066 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.43 e Å−3 |
3862 reflections | Δρmin = −0.78 e Å−3 |
177 parameters |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Br1 | 1.47778 (2) | 0.30287 (2) | 1.13729 (2) | 0.0329 (1) | |
O1 | 0.31030 (14) | −0.11093 (15) | 0.53882 (12) | 0.0262 (3) | |
O2 | 0.52777 (14) | −0.25263 (14) | 0.45870 (12) | 0.0245 (3) | |
O3 | 0.80224 (14) | −0.16522 (13) | 0.64932 (12) | 0.0231 (3) | |
O4 | 0.82532 (15) | 0.30771 (13) | 0.76664 (12) | 0.0245 (3) | |
N1 | 0.61400 (16) | −0.04621 (15) | 0.67145 (13) | 0.0192 (3) | |
C1 | 0.44905 (19) | −0.03668 (18) | 0.64902 (16) | 0.0211 (4) | |
C2 | 0.4806 (2) | 0.0789 (2) | 0.78665 (18) | 0.0247 (4) | |
C3 | 0.6499 (2) | 0.13381 (19) | 0.88148 (17) | 0.0236 (4) | |
C4 | 0.75282 (19) | 0.06297 (18) | 0.81779 (15) | 0.0201 (3) | |
C5 | 0.63877 (19) | −0.16534 (17) | 0.58003 (16) | 0.0200 (3) | |
C6 | 0.8667 (2) | −0.28116 (19) | 0.57988 (17) | 0.0230 (4) | |
C7 | 0.7644 (3) | −0.4500 (2) | 0.5536 (2) | 0.0342 (5) | |
C8 | 0.8571 (3) | −0.2594 (2) | 0.4414 (2) | 0.0336 (5) | |
C9 | 1.0554 (2) | −0.2308 (3) | 0.6973 (2) | 0.0385 (6) | |
C10 | 0.89225 (19) | 0.19009 (18) | 0.81204 (16) | 0.0200 (3) | |
C11 | 1.05272 (19) | 0.27493 (19) | 0.96104 (16) | 0.0229 (4) | |
C12 | 1.1980 (2) | 0.39234 (19) | 0.95675 (17) | 0.0240 (4) | |
C13 | 1.3675 (2) | 0.46521 (19) | 1.09855 (17) | 0.0244 (4) | |
H4 | 0.81030 | −0.00080 | 0.87430 | 0.0240* | |
H2 | 0.39270 | 0.10970 | 0.80500 | 0.0300* | |
H3 | 0.69970 | 0.20910 | 0.97810 | 0.0280* | |
H4O | 0.75420 | 0.26750 | 0.67690 | 0.0370* | |
H7A | 0.76700 | −0.45500 | 0.64460 | 0.0510* | |
H7B | 0.64260 | −0.47870 | 0.47880 | 0.0510* | |
H7C | 0.81720 | −0.52580 | 0.52020 | 0.0510* | |
H8A | 0.91190 | −0.14520 | 0.46220 | 0.0500* | |
H8B | 0.73400 | −0.29600 | 0.36660 | 0.0500* | |
H8C | 0.91910 | −0.32290 | 0.40610 | 0.0500* | |
H9A | 1.05770 | −0.24010 | 0.78710 | 0.0580* | |
H9B | 1.11690 | −0.11880 | 0.71640 | 0.0580* | |
H9C | 1.11350 | −0.30100 | 0.66420 | 0.0580* | |
H10 | 0.92810 | 0.13480 | 0.74120 | 0.0240* | |
H11A | 1.09730 | 0.19350 | 0.99690 | 0.0270* | |
H11B | 1.01900 | 0.33430 | 1.03060 | 0.0270* | |
H12A | 1.22070 | 0.33530 | 0.87830 | 0.0290* | |
H12B | 1.15710 | 0.48030 | 0.93160 | 0.0290* | |
H13A | 1.34380 | 0.51190 | 1.17960 | 0.0290* | |
H13B | 1.44870 | 0.55330 | 1.09370 | 0.0290* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0263 (1) | 0.0349 (1) | 0.0359 (1) | 0.0131 (1) | 0.0108 (1) | 0.0149 (1) |
O1 | 0.0180 (5) | 0.0296 (6) | 0.0238 (5) | 0.0047 (4) | 0.0064 (4) | 0.0070 (4) |
O2 | 0.0204 (5) | 0.0215 (5) | 0.0212 (5) | 0.0046 (4) | 0.0046 (4) | 0.0024 (4) |
O3 | 0.0186 (5) | 0.0209 (5) | 0.0226 (5) | 0.0066 (4) | 0.0059 (4) | 0.0032 (4) |
O4 | 0.0232 (5) | 0.0194 (5) | 0.0223 (5) | 0.0052 (4) | 0.0036 (4) | 0.0080 (4) |
N1 | 0.0166 (5) | 0.0175 (6) | 0.0187 (5) | 0.0038 (4) | 0.0058 (5) | 0.0049 (4) |
C1 | 0.0195 (6) | 0.0202 (7) | 0.0233 (7) | 0.0056 (5) | 0.0095 (6) | 0.0096 (5) |
C2 | 0.0230 (7) | 0.0248 (7) | 0.0267 (7) | 0.0071 (6) | 0.0130 (6) | 0.0086 (6) |
C3 | 0.0248 (7) | 0.0225 (7) | 0.0211 (7) | 0.0061 (6) | 0.0104 (6) | 0.0062 (6) |
C4 | 0.0186 (6) | 0.0184 (6) | 0.0174 (6) | 0.0037 (5) | 0.0050 (5) | 0.0050 (5) |
C5 | 0.0196 (6) | 0.0166 (6) | 0.0220 (6) | 0.0047 (5) | 0.0088 (5) | 0.0073 (5) |
C6 | 0.0227 (7) | 0.0252 (7) | 0.0238 (7) | 0.0106 (6) | 0.0122 (6) | 0.0091 (6) |
C7 | 0.0444 (10) | 0.0237 (8) | 0.0413 (10) | 0.0149 (7) | 0.0235 (8) | 0.0141 (7) |
C8 | 0.0353 (9) | 0.0419 (10) | 0.0295 (8) | 0.0121 (8) | 0.0191 (7) | 0.0164 (7) |
C9 | 0.0250 (8) | 0.0576 (13) | 0.0313 (9) | 0.0190 (8) | 0.0114 (7) | 0.0128 (8) |
C10 | 0.0192 (6) | 0.0176 (6) | 0.0195 (6) | 0.0044 (5) | 0.0069 (5) | 0.0060 (5) |
C11 | 0.0185 (6) | 0.0232 (7) | 0.0209 (7) | 0.0033 (5) | 0.0057 (5) | 0.0076 (6) |
C12 | 0.0198 (7) | 0.0222 (7) | 0.0244 (7) | 0.0035 (6) | 0.0067 (6) | 0.0087 (6) |
C13 | 0.0207 (7) | 0.0193 (7) | 0.0265 (7) | 0.0053 (5) | 0.0081 (6) | 0.0042 (6) |
Br1—C13 | 1.9575 (19) | C2—H2 | 0.9500 |
O1—C1 | 1.213 (2) | C3—H3 | 0.9500 |
O2—C5 | 1.2015 (19) | C4—H4 | 1.0000 |
O3—C5 | 1.331 (2) | C7—H7A | 0.9800 |
O3—C6 | 1.477 (2) | C7—H7B | 0.9800 |
O4—C10 | 1.413 (2) | C7—H7C | 0.9800 |
O4—H4O | 0.8400 | C8—H8A | 0.9800 |
N1—C4 | 1.4691 (19) | C8—H8B | 0.9800 |
N1—C5 | 1.388 (2) | C8—H8C | 0.9800 |
N1—C1 | 1.402 (2) | C9—H9A | 0.9800 |
C1—C2 | 1.467 (2) | C9—H9B | 0.9800 |
C2—C3 | 1.324 (3) | C9—H9C | 0.9800 |
C3—C4 | 1.491 (3) | C10—H10 | 1.0000 |
C4—C10 | 1.545 (2) | C11—H11A | 0.9900 |
C6—C8 | 1.517 (3) | C11—H11B | 0.9900 |
C6—C9 | 1.517 (3) | C12—H12A | 0.9900 |
C6—C7 | 1.510 (3) | C12—H12B | 0.9900 |
C10—C11 | 1.516 (2) | C13—H13A | 0.9900 |
C11—C12 | 1.522 (3) | C13—H13B | 0.9900 |
C12—C13 | 1.508 (2) | ||
C5—O3—C6 | 121.31 (12) | C6—C7—H7B | 109.00 |
C10—O4—H4O | 109.00 | C6—C7—H7C | 109.00 |
C1—N1—C4 | 111.34 (13) | H7A—C7—H7B | 110.00 |
C4—N1—C5 | 123.47 (14) | H7A—C7—H7C | 109.00 |
C1—N1—C5 | 124.00 (13) | H7B—C7—H7C | 109.00 |
O1—C1—N1 | 126.53 (15) | C6—C8—H8A | 109.00 |
N1—C1—C2 | 105.51 (14) | C6—C8—H8B | 109.00 |
O1—C1—C2 | 127.96 (17) | C6—C8—H8C | 109.00 |
C1—C2—C3 | 109.86 (17) | H8A—C8—H8B | 109.00 |
C2—C3—C4 | 111.62 (15) | H8A—C8—H8C | 110.00 |
N1—C4—C10 | 112.27 (12) | H8B—C8—H8C | 110.00 |
C3—C4—C10 | 113.40 (14) | C6—C9—H9A | 109.00 |
N1—C4—C3 | 101.63 (14) | C6—C9—H9B | 109.00 |
O2—C5—N1 | 124.16 (17) | C6—C9—H9C | 109.00 |
O3—C5—N1 | 108.81 (13) | H9A—C9—H9B | 109.00 |
O2—C5—O3 | 127.03 (16) | H9A—C9—H9C | 109.00 |
O3—C6—C7 | 109.20 (16) | H9B—C9—H9C | 109.00 |
O3—C6—C8 | 110.36 (15) | O4—C10—H10 | 109.00 |
C7—C6—C8 | 112.91 (14) | C4—C10—H10 | 109.00 |
C7—C6—C9 | 111.11 (17) | C11—C10—H10 | 109.00 |
O3—C6—C9 | 101.43 (14) | C10—C11—H11A | 109.00 |
C8—C6—C9 | 111.24 (18) | C10—C11—H11B | 109.00 |
O4—C10—C11 | 108.24 (13) | C12—C11—H11A | 109.00 |
C4—C10—C11 | 110.71 (13) | C12—C11—H11B | 109.00 |
O4—C10—C4 | 111.18 (15) | H11A—C11—H11B | 108.00 |
C10—C11—C12 | 112.01 (13) | C11—C12—H12A | 109.00 |
C11—C12—C13 | 113.79 (14) | C11—C12—H12B | 109.00 |
Br1—C13—C12 | 111.00 (12) | C13—C12—H12A | 109.00 |
C1—C2—H2 | 125.00 | C13—C12—H12B | 109.00 |
C3—C2—H2 | 125.00 | H12A—C12—H12B | 108.00 |
C2—C3—H3 | 124.00 | Br1—C13—H13A | 109.00 |
C4—C3—H3 | 124.00 | Br1—C13—H13B | 109.00 |
N1—C4—H4 | 110.00 | C12—C13—H13A | 109.00 |
C3—C4—H4 | 110.00 | C12—C13—H13B | 109.00 |
C10—C4—H4 | 110.00 | H13A—C13—H13B | 108.00 |
C6—C7—H7A | 109.00 | ||
C6—O3—C5—O2 | −0.7 (3) | C4—N1—C5—O2 | −177.97 (16) |
C6—O3—C5—N1 | 179.11 (13) | C4—N1—C5—O3 | 2.2 (2) |
C5—O3—C6—C7 | −64.05 (19) | O1—C1—C2—C3 | 179.65 (18) |
C5—O3—C6—C8 | 60.6 (2) | N1—C1—C2—C3 | 0.5 (2) |
C5—O3—C6—C9 | 178.60 (16) | C1—C2—C3—C4 | 0.8 (2) |
C4—N1—C1—O1 | 179.21 (17) | C2—C3—C4—N1 | −1.68 (19) |
C4—N1—C1—C2 | −1.66 (18) | C2—C3—C4—C10 | 119.01 (16) |
C5—N1—C1—O1 | −12.9 (3) | N1—C4—C10—O4 | 72.57 (17) |
C5—N1—C1—C2 | 166.25 (15) | N1—C4—C10—C11 | −167.08 (14) |
C1—N1—C4—C3 | 2.02 (17) | C3—C4—C10—O4 | −41.91 (17) |
C1—N1—C4—C10 | −119.46 (16) | C3—C4—C10—C11 | 78.44 (17) |
C5—N1—C4—C3 | −165.97 (15) | O4—C10—C11—C12 | −62.07 (19) |
C5—N1—C4—C10 | 72.6 (2) | C4—C10—C11—C12 | 175.84 (14) |
C1—N1—C5—O2 | 15.6 (3) | C10—C11—C12—C13 | −173.35 (15) |
C1—N1—C5—O3 | −164.30 (14) | C11—C12—C13—Br1 | 68.73 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H4O···O1i | 0.84 | 2.17 | 2.9138 (16) | 148 |
O4—H4O···O2i | 0.84 | 2.28 | 2.9225 (18) | 134 |
Symmetry code: (i) −x+1, −y, −z+1. |
Experimental details
(I) | (II) | (III) | |
Crystal data | |||
Chemical formula | C17H20N2O6 | C20H24N2O8 | C13H20BrNO4 |
Mr | 348.35 | 420.41 | 334.21 |
Crystal system, space group | Trigonal, R3 | Orthorhombic, Pbca | Triclinic, P1 |
Temperature (K) | 173 | 153 | 173 |
a, b, c (Å) | 21.1117 (8), 21.1117 (8), 20.3244 (9) | 9.1439 (7), 20.7113 (18), 21.598 (2) | 8.8340 (9), 9.0750 (9), 10.7283 (10) |
α, β, γ (°) | 90, 90, 120 | 90, 90, 90 | 104.176 (7), 113.759 (7), 101.367 (8) |
V (Å3) | 7845.0 (5) | 4090.3 (6) | 719.57 (12) |
Z | 18 | 8 | 2 |
Radiation type | Mo Kα | Mo Kα | Mo Kα |
µ (mm−1) | 0.10 | 0.11 | 2.87 |
Crystal size (mm) | 0.45 × 0.45 × 0.45 | 0.50 × 0.45 × 0.10 | 0.50 × 0.50 × 0.50 |
Data collection | |||
Diffractometer | Stoe IPDS2 diffractometer | Stoe IPDS2 diffractometer | Stoe IPDS2 diffractometer |
Absorption correction | – | – | Multi-scan (MULscanABS in PLATON; Spek, 2009) |
Tmin, Tmax | – | – | 0.307, 0.472 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 39673, 4718, 4041 | 16666, 3856, 2605 | 9956, 3862, 3587 |
Rint | 0.089 | 0.078 | 0.031 |
(sin θ/λ)max (Å−1) | 0.688 | 0.616 | 0.686 |
Refinement | |||
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.098, 1.05 | 0.044, 0.110, 0.95 | 0.027, 0.066, 1.05 |
No. of reflections | 4718 | 3856 | 3862 |
No. of parameters | 235 | 277 | 177 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.27, −0.17 | 0.18, −0.22 | 0.43, −0.78 |
Computer programs: X-AREA (Stoe & Cie, 2006), X-RED32 (Stoe & Cie, 2006), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H4O···O1i | 0.852 (18) | 1.930 (19) | 2.7600 (15) | 164.3 (19) |
Symmetry code: (i) y, −x+y, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H4O···O1i | 0.84 | 2.15 | 2.903 (2) | 149 |
O4—H4O···O2i | 0.84 | 2.33 | 2.9696 (16) | 134 |
Symmetry code: (i) −x+2, −y+2, −z+2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H4O···O1i | 0.84 | 2.17 | 2.9138 (16) | 148.00 |
O4—H4O···O2i | 0.84 | 2.28 | 2.9225 (18) | 134.00 |
Symmetry code: (i) −x+1, −y, −z+1. |
The natural product (-)-rhazinilam was first isolated by Linde in 1965 from Melodinus australis (Baudoin et al., 2004). The tetracyclic structure was determined by a combination of X-ray analysis and chemical studies 7 years later (De Silva et al., 1972). Screening experiments have shown that (-)-rhazinilam has interesting pharmacological properties, due to its interference in the tubuline–microtubule equilibrium during mitosis. It has also been shown to have significant in vitro cytotoxicity, but no activity in vivo (Baudoin et al., 2004). Several groups have reported their studies on the synthesis of this natural product and its analogues (Decor et al., 2006; Baudoin et al., 2002; Ghosez et al., 2001; Rubio et al., 2001; Dupont et al., 2000; Alazard et al., 1996). Our synthetic strategy was to replace the pyrrole ring by a corresponding pyrrol-2(5H)-one ring or its protected 2-hydroxypyrrole tautomer (Vallat et al., 2009).
In order to introduce the missing side chain needed for the formation of ring B of rhazinilam, we tested the known Mukaiyama crossed-aldol-type reaction (Mukaiyama et al., 1974) of the protected 2-hydroxypyrrole with different aldehydes. This reaction was successful when using the 2-nitrophenyl-substituted hydroxypyrrole (1), or the unsubstituted hydroxypyrrole (2), and boron trifluoride diethyl ether as catalyst. The relative configuration at the two newly formed chiral centres could not be determined unequivocally using NMR methods. A literature search showed that the Boc-protected (Boc is tert-butoxycarbonyl) TBS-silyloxy-pyrrole (2) had been used in a series of very elegant natural product syntheses (Battistini et al., 2004; Rassu et al., 2002, 2003; Barnes et al., 2002; Casiraghi et al., 1992; DeGoey et al., 2002). The diastereoselectivity of the reaction with a series of chiral aldehydes and imines has been carefully studied and was shown, for most of the reported processes, to be syn. However, the reaction using the imine has been reported to be anti selective (Barnes et al., 2002; DeGoey et al., 2002). The diastereoselectivity of the crossed-aldol-type reaction using a phenyl-substituted pyrrole has not been reported previously, to our knowledge. We report here the crystal structures of tert-butyl 2-(1-hydroxyethyl)-3-(2-nitrophenyl)-5-oxo-2,5-dihydro-1H-pyrrole-1-carboxylate, (I), tert-butyl 2-[1-hydroxy-3-(methoxycarbonyl)propyl]-3-(2-nitrophenyl)-5-oxo-2,5-dihydro-1H-pyrrole-1-carboxylate, (II), and tert-butyl 2-(4-bromo-1-hydroxybutyl)-5-oxo-2,5-dihydro-1H-pyrrole-1-carboxylate, (III), which were studied to determine the diastereoselectivity of the Mukaiyama crossed-aldol-type reaction.
The molecular structures of compounds (I), (II) and (III) are illustrated in Figs. 1, 3 and 5, respectively. The crystal packing in compounds (I), (II) and (III), also showing the hydrogen bonding, are illustrated in Figs. 2, 4 and 6, respectively. The bond lengths and angles in all three compounds are in normal ranges (Allen et al., 1987). Details of the hydrogen bonding are given in Tables 1, 2 and 3, respectively.
All three compounds contain a 2-oxo-2,5-dihydro-1H-pyrrole-1-carboxylate unit that has a very similar geometry. In compounds (I) and (II), the 2-nitrophenyl substituent at C3 is inclined to the best plane through the 2,5-dihydro-1H-pyrrole ring by 52.47 (6) and 71.25 (11)°, respectively. The orientation of the hydroxyl substituent at C10 in compound (I) (Fig. 1) is different to that in compounds (II) (Fig. 3) and (III) (Fig. 5). In (I), it lies trans with respect to the 2,5-dihydro-1H-pyrrole ring, and the C10—O4 bond makes an angle of 1.16 (9)° with the mean plane of the pyrrole ring. In compounds (II) and (III), however, it is cis with respect to the pyrrole ring, and here the C10—O4 bond is inclined to the pyrrole ring mean plane by 55.22 (11)° in (II), and 56.08 (11)° in (III).
In all three compounds, O—H···O hydrogen bonds play an important role. In the crystal structure of compound (I), a hexagonal arrangement of symmetry-related molecules is formed (Fig. 2 and Table 1). In compounds (II) and (III), the hydroxyl group is involved in bifurcated O—H···O hydrogen bonds, and in both crystal structures centrosymmetric hydrogen-bonded dimers are formed (Figs. 4 and 6, and Tables 2 and 3, respectively).
The relative stereochemistry of the newly created chiral centres in compound (I), at C4 and C10, is R,R. When a larger aldehyde was used, as in the case of compounds (II) and (III), the relative stereochemistry of the newly created chiral centres is R,S. The synthetic procedure used led to a syn configuration of the two newly created chiral centres in all three compounds, in close analogy to reports in the literature (Battistini et al., 2004; Rassu et al., 2002, 2003; Casiraghi et al., 1992). Changing the Lewis acid, that is using BF3 instead of SnCl4, and introducing an aryl substituent at the carbon next to the nucleophilic centre, does not influence the diastereoselectivity of the process. An extended transition state respecting the Bürgi–Dunitz angle (Bürgi & Dunitz, 1974) is compatible with these results.