Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270105016513/ga1099sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270105016513/ga1099Isup2.hkl |
CCDC reference: 288638
To a hot methanolic solution of pyrimethamine (62 mg, Shah Pharma Chemicals, India), a few drops of nitric acid were added. The solution was warmed over a water bath for a few minutes. The resultant solution was allowed to cool slowly at room temperature. Crystals of (I) appeared from the mother liquor after a few days.
All the H atoms were fixed geometrically and were refined using a riding model. The refined N—H and C—H bond lengths are 0.85–0.86 Å and 0.92–0.96 Å, and with Uiso(H)=1.2Ueq.
Data collection: CrysAlis CCD (Oxford Diffraction, 2000); cell refinement: CrysAlis RED (Oxford Diffraction, 2000); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPII (Johnson, 1976) and PLATON (Spek, 2003); software used to prepare material for publication: PLATON.
C12H15ClN42+·2NO3− | F(000) = 3104 |
Mr = 374.75 | Dx = 1.516 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 7379 reflections |
a = 32.700 (7) Å | θ = 3.4–25.7° |
b = 12.926 (3) Å | µ = 0.28 mm−1 |
c = 16.065 (3) Å | T = 295 K |
β = 104.73 (3)° | Prismatic, colourless |
V = 6567 (3) Å3 | 0.4 × 0.3 × 0.2 mm |
Z = 16 |
Kuma KM4CCD κ-geometry diffractometer | 6490 independent reflections |
Radiation source: fine-focus sealed tube | 3225 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.048 |
ω–scans | θmax = 26.1°, θmin = 2.6° |
Absorption correction: multi-scan (XEMP, Siemens, 1990) | h = −21→40 |
Tmin = 0.893, Tmax = 0.952 | k = −15→15 |
27180 measured reflections | l = −19→19 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.059 | All H-atom parameters refined |
wR(F2) = 0.231 | w = 1/[σ2(Fo2) + (0.0399P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.03 | (Δ/σ)max < 0.001 |
6490 reflections | Δρmax = 0.46 e Å−3 |
451 parameters | Δρmin = −0.64 e Å−3 |
0 restraints | Extinction correction: SHELXL, FC*=KFC[1+0.001XFC2Λ3/SIN(2Θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.00014 (3) |
C12H15ClN42+·2NO3− | V = 6567 (3) Å3 |
Mr = 374.75 | Z = 16 |
Monoclinic, C2/c | Mo Kα radiation |
a = 32.700 (7) Å | µ = 0.28 mm−1 |
b = 12.926 (3) Å | T = 295 K |
c = 16.065 (3) Å | 0.4 × 0.3 × 0.2 mm |
β = 104.73 (3)° |
Kuma KM4CCD κ-geometry diffractometer | 6490 independent reflections |
Absorption correction: multi-scan (XEMP, Siemens, 1990) | 3225 reflections with I > 2σ(I) |
Tmin = 0.893, Tmax = 0.952 | Rint = 0.048 |
27180 measured reflections |
R[F2 > 2σ(F2)] = 0.059 | 0 restraints |
wR(F2) = 0.231 | All H-atom parameters refined |
S = 1.03 | Δρmax = 0.46 e Å−3 |
6490 reflections | Δρmin = −0.64 e Å−3 |
451 parameters |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All e.s.d.'s are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles |
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | −0.04072 (4) | 0.38389 (12) | 0.14099 (11) | 0.0853 (6) | |
N1 | 0.16443 (10) | 0.3660 (2) | −0.0622 (2) | 0.0355 (11) | |
N2 | 0.23742 (11) | 0.3728 (3) | −0.0214 (2) | 0.0464 (12) | |
N3 | 0.19920 (10) | 0.3713 (2) | 0.0814 (2) | 0.0357 (11) | |
N4 | 0.16403 (11) | 0.3733 (3) | 0.1880 (2) | 0.0450 (11) | |
C2 | 0.20081 (12) | 0.3704 (3) | −0.0022 (2) | 0.0340 (12) | |
C4 | 0.16211 (12) | 0.3728 (3) | 0.1053 (2) | 0.0331 (12) | |
C5 | 0.12343 (12) | 0.3709 (3) | 0.0403 (2) | 0.0334 (12) | |
C6 | 0.12548 (12) | 0.3651 (3) | −0.0429 (2) | 0.0338 (12) | |
C7 | 0.08849 (13) | 0.3525 (3) | −0.1182 (2) | 0.0435 (14) | |
C8 | 0.08739 (14) | 0.2438 (4) | −0.1555 (3) | 0.0623 (19) | |
C9 | 0.08293 (12) | 0.3726 (3) | 0.0669 (2) | 0.0365 (14) | |
C10 | 0.06674 (16) | 0.4643 (4) | 0.0862 (4) | 0.071 (2) | |
C11 | 0.02905 (17) | 0.4677 (4) | 0.1102 (4) | 0.085 (3) | |
C12 | 0.00726 (14) | 0.3795 (4) | 0.1141 (3) | 0.0531 (17) | |
C13 | 0.02354 (14) | 0.2866 (4) | 0.0973 (3) | 0.0549 (17) | |
C14 | 0.06131 (13) | 0.2823 (4) | 0.0737 (3) | 0.0493 (17) | |
Cl1A | 0.00876 (4) | 0.14944 (12) | 0.62715 (8) | 0.0713 (5) | |
N1A | 0.17211 (10) | 0.1267 (2) | 0.3201 (2) | 0.0402 (11) | |
N2A | 0.24307 (11) | 0.1204 (3) | 0.3232 (2) | 0.0506 (14) | |
N3A | 0.22203 (11) | 0.1212 (2) | 0.4515 (2) | 0.0384 (11) | |
N4A | 0.20396 (11) | 0.1238 (3) | 0.5789 (2) | 0.0461 (13) | |
C2A | 0.21302 (13) | 0.1223 (3) | 0.3637 (2) | 0.0378 (14) | |
C4A | 0.19163 (12) | 0.1248 (3) | 0.4957 (2) | 0.0337 (12) | |
C5A | 0.14851 (12) | 0.1297 (3) | 0.4484 (2) | 0.0340 (12) | |
C6A | 0.13952 (13) | 0.1316 (3) | 0.3602 (2) | 0.0361 (12) | |
C7A | 0.09640 (13) | 0.1400 (3) | 0.3002 (3) | 0.0471 (14) | |
C8A | 0.07890 (16) | 0.0393 (4) | 0.2610 (3) | 0.074 (2) | |
C9A | 0.11470 (12) | 0.1338 (3) | 0.4949 (2) | 0.0354 (14) | |
C10A | 0.10775 (14) | 0.2238 (3) | 0.5362 (3) | 0.0485 (17) | |
C11A | 0.07577 (15) | 0.2283 (4) | 0.5782 (3) | 0.0558 (17) | |
C12A | 0.05042 (13) | 0.1421 (4) | 0.5778 (3) | 0.0464 (14) | |
C13A | 0.05715 (13) | 0.0518 (4) | 0.5383 (3) | 0.0482 (17) | |
C14A | 0.08961 (13) | 0.0473 (3) | 0.4978 (3) | 0.0432 (16) | |
O1B | 0.30315 (12) | 0.3803 (3) | 0.1384 (2) | 0.0810 (18) | |
O2B | 0.33083 (10) | 0.3773 (3) | 0.2751 (2) | 0.0723 (13) | |
O3B | 0.26349 (10) | 0.3648 (3) | 0.22723 (19) | 0.0580 (13) | |
N1B | 0.29935 (12) | 0.3739 (3) | 0.2139 (2) | 0.0481 (14) | |
O1C | 0.21359 (11) | 0.1298 (3) | 0.1448 (2) | 0.0724 (13) | |
O2C | 0.16767 (10) | 0.1279 (3) | 0.02391 (19) | 0.0609 (13) | |
O3C | 0.14755 (10) | 0.1242 (3) | 0.14138 (19) | 0.0582 (13) | |
N1C | 0.17619 (12) | 0.1263 (3) | 0.1024 (2) | 0.0422 (12) | |
O1D | 0.19156 (10) | 0.3948 (3) | 0.48109 (18) | 0.0618 (13) | |
O2D | 0.20758 (10) | 0.3579 (3) | 0.3641 (2) | 0.0701 (13) | |
O3D | 0.14291 (10) | 0.3885 (3) | 0.3619 (2) | 0.0621 (13) | |
N1D | 0.18011 (11) | 0.3814 (2) | 0.4017 (2) | 0.0397 (12) | |
O1E | 0.19542 (13) | 0.6211 (3) | 0.2856 (2) | 0.0939 (18) | |
O2E | 0.16923 (10) | 0.6060 (2) | 0.14908 (18) | 0.0526 (11) | |
O3E | 0.12991 (14) | 0.6023 (4) | 0.2360 (3) | 0.1038 (19) | |
N1E | 0.16509 (14) | 0.6105 (3) | 0.2241 (2) | 0.0498 (14) | |
H1 | 0.16510 | 0.36390 | −0.11530 | 0.0430* | |
H2 | 0.26040 | 0.37550 | 0.01900 | 0.0560* | |
H3 | 0.23850 | 0.37160 | −0.07440 | 0.0560* | |
H4 | 0.22260 | 0.37140 | 0.12090 | 0.0430* | |
H5 | 0.18820 | 0.37270 | 0.22520 | 0.0540* | |
H6 | 0.14110 | 0.37400 | 0.20500 | 0.0540* | |
H7 | 0.06270 | 0.36480 | −0.10040 | 0.0520* | |
H7A | 0.08990 | 0.40310 | −0.16200 | 0.0520* | |
H8A | 0.08600 | 0.19370 | −0.11230 | 0.0750* | |
H8B | 0.06300 | 0.23710 | −0.20330 | 0.0750* | |
H8C | 0.11250 | 0.23240 | −0.17490 | 0.0750* | |
H10 | 0.08130 | 0.52540 | 0.08300 | 0.0860* | |
H11 | 0.01840 | 0.53080 | 0.12300 | 0.1020* | |
H13 | 0.00890 | 0.22580 | 0.10120 | 0.0660* | |
H14 | 0.07220 | 0.21880 | 0.06280 | 0.0590* | |
H1A | 0.16600 | 0.12620 | 0.26480 | 0.0480* | |
H2A | 0.26910 | 0.11760 | 0.35210 | 0.0610* | |
H2B | 0.23680 | 0.12160 | 0.26790 | 0.0610* | |
H3A | 0.24810 | 0.11850 | 0.48020 | 0.0460* | |
H4A | 0.18570 | 0.12590 | 0.60900 | 0.0550* | |
H4B | 0.23050 | 0.12130 | 0.60420 | 0.0550* | |
H10A | 0.12450 | 0.28170 | 0.53540 | 0.0580* | |
H11A | 0.07130 | 0.28860 | 0.60620 | 0.0670* | |
H13A | 0.04030 | −0.00580 | 0.53960 | 0.0570* | |
H14A | 0.09470 | −0.01400 | 0.47190 | 0.0520* | |
H71A | 0.09760 | 0.18780 | 0.25440 | 0.0570* | |
H71B | 0.07720 | 0.16860 | 0.33140 | 0.0570* | |
H81A | 0.09820 | 0.00950 | 0.23160 | 0.0890* | |
H82A | 0.05200 | 0.05020 | 0.22090 | 0.0890* | |
H83A | 0.07560 | −0.00670 | 0.30570 | 0.0890* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0551 (9) | 0.1048 (12) | 0.1121 (12) | −0.0042 (8) | 0.0508 (9) | −0.0107 (9) |
N1 | 0.039 (2) | 0.045 (2) | 0.0253 (17) | −0.0022 (16) | 0.0135 (15) | −0.0021 (15) |
N2 | 0.034 (2) | 0.063 (2) | 0.045 (2) | −0.0015 (17) | 0.0153 (17) | −0.0022 (18) |
N3 | 0.0304 (18) | 0.044 (2) | 0.0312 (18) | −0.0006 (15) | 0.0048 (14) | 0.0018 (15) |
N4 | 0.044 (2) | 0.064 (2) | 0.0268 (18) | −0.0046 (18) | 0.0089 (16) | 0.0008 (17) |
C2 | 0.037 (2) | 0.034 (2) | 0.032 (2) | −0.0010 (18) | 0.0108 (18) | −0.0013 (18) |
C4 | 0.039 (2) | 0.029 (2) | 0.032 (2) | −0.0044 (17) | 0.0101 (18) | −0.0013 (17) |
C5 | 0.034 (2) | 0.038 (2) | 0.028 (2) | −0.0026 (18) | 0.0077 (17) | −0.0021 (17) |
C6 | 0.033 (2) | 0.039 (2) | 0.030 (2) | −0.0008 (18) | 0.0090 (17) | −0.0005 (17) |
C7 | 0.035 (2) | 0.066 (3) | 0.028 (2) | 0.001 (2) | 0.0053 (18) | −0.001 (2) |
C8 | 0.054 (3) | 0.088 (4) | 0.043 (3) | −0.023 (3) | 0.009 (2) | −0.014 (3) |
C9 | 0.033 (2) | 0.047 (3) | 0.031 (2) | −0.0035 (19) | 0.0108 (17) | −0.0044 (19) |
C10 | 0.066 (3) | 0.044 (3) | 0.121 (5) | −0.010 (3) | 0.055 (3) | −0.019 (3) |
C11 | 0.073 (4) | 0.053 (3) | 0.152 (6) | −0.009 (3) | 0.073 (4) | −0.029 (4) |
C12 | 0.042 (3) | 0.068 (3) | 0.054 (3) | −0.002 (2) | 0.021 (2) | −0.007 (2) |
C13 | 0.044 (3) | 0.058 (3) | 0.067 (3) | −0.012 (2) | 0.022 (2) | 0.003 (3) |
C14 | 0.045 (3) | 0.047 (3) | 0.059 (3) | 0.002 (2) | 0.019 (2) | 0.003 (2) |
Cl1A | 0.0475 (8) | 0.1116 (12) | 0.0616 (8) | 0.0097 (7) | 0.0264 (6) | −0.0026 (7) |
N1A | 0.042 (2) | 0.054 (2) | 0.0241 (17) | 0.0036 (17) | 0.0076 (15) | −0.0032 (15) |
N2A | 0.043 (2) | 0.073 (3) | 0.039 (2) | 0.0063 (19) | 0.0165 (17) | −0.0041 (19) |
N3A | 0.0351 (19) | 0.048 (2) | 0.0295 (18) | 0.0013 (16) | 0.0034 (15) | −0.0022 (15) |
N4A | 0.037 (2) | 0.073 (3) | 0.0263 (18) | −0.0005 (18) | 0.0043 (15) | −0.0015 (17) |
C2A | 0.044 (3) | 0.037 (2) | 0.032 (2) | 0.0013 (19) | 0.0089 (19) | −0.0040 (18) |
C4A | 0.037 (2) | 0.037 (2) | 0.027 (2) | 0.0014 (18) | 0.0077 (17) | 0.0003 (17) |
C5A | 0.034 (2) | 0.037 (2) | 0.030 (2) | 0.0012 (18) | 0.0064 (17) | −0.0017 (18) |
C6A | 0.037 (2) | 0.040 (2) | 0.030 (2) | 0.0012 (18) | 0.0062 (18) | −0.0024 (18) |
C7A | 0.037 (2) | 0.069 (3) | 0.033 (2) | 0.004 (2) | 0.0045 (19) | 0.002 (2) |
C8A | 0.062 (4) | 0.087 (4) | 0.065 (3) | −0.018 (3) | 0.000 (3) | −0.016 (3) |
C9A | 0.034 (2) | 0.047 (3) | 0.0229 (19) | 0.0046 (19) | 0.0030 (17) | 0.0006 (18) |
C10A | 0.046 (3) | 0.050 (3) | 0.052 (3) | −0.007 (2) | 0.017 (2) | −0.011 (2) |
C11A | 0.057 (3) | 0.058 (3) | 0.057 (3) | 0.000 (3) | 0.023 (2) | −0.014 (2) |
C12A | 0.035 (2) | 0.071 (3) | 0.034 (2) | 0.011 (2) | 0.0100 (19) | 0.005 (2) |
C13A | 0.044 (3) | 0.055 (3) | 0.047 (3) | −0.004 (2) | 0.014 (2) | 0.000 (2) |
C14A | 0.049 (3) | 0.041 (3) | 0.042 (2) | 0.003 (2) | 0.016 (2) | −0.0056 (19) |
O1B | 0.072 (3) | 0.139 (4) | 0.0337 (19) | 0.000 (2) | 0.0164 (17) | 0.004 (2) |
O2B | 0.041 (2) | 0.133 (3) | 0.0385 (18) | −0.008 (2) | 0.0018 (16) | 0.003 (2) |
O3B | 0.0365 (18) | 0.093 (3) | 0.0436 (18) | −0.0011 (17) | 0.0087 (14) | 0.0041 (17) |
N1B | 0.048 (2) | 0.062 (3) | 0.035 (2) | 0.0007 (19) | 0.0121 (19) | 0.0023 (18) |
O1C | 0.040 (2) | 0.136 (3) | 0.0401 (18) | −0.004 (2) | 0.0081 (16) | 0.000 (2) |
O2C | 0.062 (2) | 0.091 (3) | 0.0296 (17) | −0.0049 (18) | 0.0112 (15) | 0.0013 (16) |
O3C | 0.0454 (19) | 0.094 (3) | 0.0372 (17) | 0.0004 (17) | 0.0140 (15) | −0.0022 (16) |
N1C | 0.051 (2) | 0.045 (2) | 0.032 (2) | −0.0028 (18) | 0.0130 (18) | −0.0016 (17) |
O1D | 0.057 (2) | 0.100 (3) | 0.0273 (17) | −0.0021 (18) | 0.0086 (15) | −0.0033 (16) |
O2D | 0.0396 (19) | 0.130 (3) | 0.0408 (18) | 0.0096 (19) | 0.0103 (15) | −0.0155 (19) |
O3D | 0.0349 (19) | 0.099 (3) | 0.0499 (19) | 0.0047 (17) | 0.0061 (15) | 0.0020 (18) |
N1D | 0.040 (2) | 0.044 (2) | 0.034 (2) | 0.0004 (17) | 0.0072 (17) | 0.0044 (16) |
O1E | 0.088 (3) | 0.156 (4) | 0.0298 (19) | −0.042 (3) | 0.0007 (19) | −0.004 (2) |
O2E | 0.054 (2) | 0.076 (2) | 0.0307 (16) | 0.0017 (16) | 0.0161 (14) | 0.0009 (15) |
O3E | 0.091 (3) | 0.143 (4) | 0.101 (3) | 0.022 (3) | 0.068 (3) | 0.009 (3) |
N1E | 0.064 (3) | 0.047 (2) | 0.047 (2) | −0.001 (2) | 0.030 (2) | 0.0012 (18) |
Cl1—C12 | 1.731 (5) | C5—C6 | 1.357 (5) |
Cl1A—C12A | 1.744 (5) | C5—C9 | 1.492 (6) |
O1B—N1B | 1.253 (5) | C6—C7 | 1.486 (5) |
O2B—N1B | 1.230 (5) | C7—C8 | 1.524 (6) |
O3B—N1B | 1.250 (5) | C9—C14 | 1.383 (6) |
O1C—N1C | 1.240 (5) | C9—C10 | 1.366 (7) |
O2C—N1C | 1.220 (4) | C10—C11 | 1.382 (8) |
O3C—N1C | 1.252 (5) | C11—C12 | 1.354 (7) |
O1D—N1D | 1.247 (4) | C12—C13 | 1.368 (7) |
O2D—N1D | 1.241 (5) | C13—C14 | 1.382 (7) |
O3D—N1D | 1.225 (5) | C7—H7A | 0.9703 |
N1—C2 | 1.328 (5) | C7—H7 | 0.9700 |
N1—C6 | 1.385 (5) | C8—H8A | 0.9587 |
O1E—N1E | 1.217 (5) | C8—H8C | 0.9608 |
N2—C2 | 1.310 (5) | C8—H8B | 0.9601 |
O2E—N1E | 1.248 (4) | C10—H10 | 0.9303 |
N3—C2 | 1.357 (4) | C11—H11 | 0.9302 |
N3—C4 | 1.362 (5) | C13—H13 | 0.9306 |
O3E—N1E | 1.218 (7) | C14—H14 | 0.9289 |
N4—C4 | 1.314 (4) | C4A—C5A | 1.423 (5) |
N1—H1 | 0.8593 | C5A—C9A | 1.484 (5) |
N2—H2 | 0.8597 | C5A—C6A | 1.372 (4) |
N2—H3 | 0.8612 | C6A—C7A | 1.496 (6) |
N3—H4 | 0.8610 | C7A—C8A | 1.495 (7) |
N4—H6 | 0.8608 | C9A—C10A | 1.386 (6) |
N4—H5 | 0.8612 | C9A—C14A | 1.395 (6) |
N1A—C2A | 1.344 (5) | C10A—C11A | 1.382 (7) |
N1A—C6A | 1.380 (5) | C11A—C12A | 1.388 (7) |
N2A—C2A | 1.309 (5) | C12A—C13A | 1.373 (7) |
N3A—C2A | 1.366 (4) | C13A—C14A | 1.380 (6) |
N3A—C4A | 1.361 (5) | C7A—H71A | 0.9692 |
N4A—C4A | 1.294 (4) | C7A—H71B | 0.9706 |
N1A—H1A | 0.8596 | C8A—H81A | 0.9599 |
N2A—H2B | 0.8596 | C8A—H82A | 0.9594 |
N2A—H2A | 0.8605 | C8A—H83A | 0.9593 |
N3A—H3A | 0.8606 | C10A—H10A | 0.9294 |
N4A—H4A | 0.8590 | C11A—H11A | 0.9299 |
N4A—H4B | 0.8603 | C13A—H13A | 0.9296 |
C4—C5 | 1.421 (5) | C14A—H14A | 0.9295 |
Cl1···O3Di | 3.331 (4) | N1D···H4Bviii | 2.9488 |
Cl1A···C8i | 3.508 (5) | N1D···H5 | 2.9162 |
Cl1···H71Bi | 3.1037 | N1D···H3Aviii | 2.6164 |
Cl1A···H8Bi | 3.1220 | N1E···H1vii | 2.6011 |
Cl1A···H82Aii | 3.1375 | N1E···H2Aiv | 2.7345 |
Cl1A···H8Biii | 3.0647 | C2···O1Ex | 3.370 (5) |
Cl1A···H8Ai | 3.1000 | C2···O1Dx | 3.055 (6) |
O1B···N2 | 2.901 (5) | C2···O2C | 3.377 (5) |
O1B···C2Aiv | 3.171 (6) | C2A···N1Bvi | 3.431 (5) |
O1B···O2Cv | 2.998 (5) | C2A···O1Bvi | 3.171 (6) |
O1C···N2A | 2.784 (4) | C2A···O2D | 3.051 (6) |
O1C···N2v | 2.848 (5) | C4···O3C | 3.321 (5) |
O1C···O1Evi | 2.902 (6) | C4···O3B | 3.396 (5) |
O1D···O2Evii | 2.970 (4) | C4···O2E | 3.091 (5) |
O1D···N3Aviii | 2.765 (5) | C4···N1C | 3.221 (6) |
O1D···N1vii | 3.243 (5) | C4A···O2Cii | 3.416 (6) |
O1D···C2vii | 3.055 (6) | C6A···O3D | 3.322 (6) |
O1E···N2vii | 3.056 (5) | C7···C14 | 3.537 (6) |
O1E···N1vii | 2.880 (5) | C7···O3Ex | 3.046 (6) |
O1E···N2Aiv | 2.981 (5) | C7A···O3C | 3.394 (6) |
O1E···O1Civ | 2.902 (6) | C7A···C14A | 3.453 (6) |
O1E···C2vii | 3.370 (5) | C8···O3Ex | 3.188 (7) |
O2B···N4Aviii | 2.855 (5) | C8···Cl1Ai | 3.508 (5) |
O2C···C14Aix | 3.358 (6) | C10···N4 | 3.396 (7) |
O2C···C4Aix | 3.416 (6) | C10···O3E | 3.273 (8) |
O2C···O1Bv | 2.998 (5) | C10A···O2Evii | 3.212 (5) |
O2C···N2v | 3.114 (5) | C10A···N4A | 3.308 (6) |
O2C···C2 | 3.377 (5) | C14···C7 | 3.537 (6) |
O2D···N4 | 2.832 (4) | C14A···O3Cii | 3.406 (6) |
O2D···N1A | 3.219 (5) | C14A···C7A | 3.453 (6) |
O2D···O3B | 3.198 (5) | C14A···O2Cii | 3.358 (6) |
O2D···C2A | 3.051 (6) | C8···H1 | 2.9069 |
O2D···N3Aviii | 3.268 (5) | C8A···H1A | 3.0478 |
O2D···N4Aviii | 2.813 (5) | C9···H7 | 2.6014 |
O2E···N4 | 3.086 (5) | C9···H6 | 2.5288 |
O2E···O1Dx | 2.970 (4) | C9A···H71B | 2.6396 |
O2E···N2Aiv | 2.794 (5) | C9A···H4A | 2.5684 |
O2E···C4 | 3.091 (5) | C10···H6 | 2.9253 |
O2E···C10Ax | 3.212 (5) | C10A···H4A | 2.8197 |
O3B···O2D | 3.198 (5) | C14···H71A | 3.0944 |
O3B···N3 | 2.722 (4) | C14···H7 | 3.0044 |
O3B···N4Aviii | 3.028 (4) | C14A···H71B | 3.0360 |
O3B···N4 | 3.154 (5) | C14A···H83A | 3.0825 |
O3B···C4 | 3.396 (5) | H1···N1Ex | 2.6011 |
O3C···C14Aix | 3.406 (6) | H1···C8 | 2.9069 |
O3C···C4 | 3.321 (5) | H1···H3 | 2.3239 |
O3C···N1A | 2.778 (4) | H1···H7A | 2.4348 |
O3C···C7A | 3.394 (6) | H1···H8C | 2.4345 |
O3D···Cl1i | 3.331 (4) | H1···O1Ex | 2.0876 |
O3D···C6A | 3.322 (6) | H1···O3Ex | 2.4133 |
O3D···N4 | 3.050 (5) | H1A···O3C | 1.9203 |
O3E···C8vii | 3.188 (7) | H1A···N1C | 2.7129 |
O3E···C10 | 3.273 (8) | H1A···C8A | 3.0478 |
O3E···N1vii | 3.177 (6) | H1A···H2B | 2.3038 |
O3E···C7vii | 3.046 (6) | H1A···H71A | 2.3398 |
O1B···H2 | 2.0673 | H1A···O1C | 2.7687 |
O1B···H4 | 2.5795 | H2···O2Cv | 2.6142 |
O1C···H3v | 2.1529 | H2···O1B | 2.0673 |
O1C···H2B | 1.9326 | H2···H4 | 2.2890 |
O1C···H1A | 2.7687 | H2A···O1Dviii | 2.6662 |
O1D···H2Aviii | 2.6662 | H2A···O2Evi | 2.0271 |
O1D···H3Aviii | 1.9198 | H2A···N1Evi | 2.7345 |
O1E···H2Aiv | 2.7472 | H2A···H3A | 2.3292 |
O1E···H1vii | 2.0876 | H2A···O1Evi | 2.7472 |
O1E···H2Biv | 2.5729 | H2B···O1Evi | 2.5729 |
O1E···H3vii | 2.3325 | H2B···O1C | 1.9326 |
O2B···H81Aiv | 2.9059 | H2B···N1C | 2.8846 |
O2B···H4Aviii | 2.0670 | H2B···H1A | 2.3038 |
O2C···H14Aix | 2.7469 | H3···O1Cv | 2.1529 |
O2C···H2v | 2.6142 | H3···N1Cv | 2.9365 |
O2D···H4Bviii | 1.9766 | H3···H1 | 2.3239 |
O2D···H5 | 2.1676 | H3···O1Ex | 2.3325 |
O2D···H3Aviii | 2.5703 | H3A···N1Dviii | 2.6164 |
O2D···H6 | 2.9114 | H3A···O2Dviii | 2.5703 |
O2E···H2Aiv | 2.0271 | H3A···H2A | 2.3292 |
O2E···H10Ax | 2.4947 | H3A···H4B | 2.2099 |
O3B···H5 | 2.4560 | H3A···O1Dviii | 1.9198 |
O3B···H4Bviii | 2.6709 | H4···N1B | 2.5739 |
O3B···H4Aviii | 2.7339 | H4···H5 | 2.2431 |
O3B···H4 | 1.8846 | H4···O3B | 1.8846 |
O3C···H1A | 1.9203 | H4···H2 | 2.2890 |
O3C···H71A | 2.8546 | H4···O1B | 2.5795 |
O3C···H14 | 2.7528 | H4A···N1Bviii | 2.7616 |
O3C···H81A | 2.8447 | H4A···C10A | 2.8197 |
O3D···H6 | 2.5132 | H4A···O2Bviii | 2.0670 |
O3E···H10 | 2.7513 | H4A···O3Bviii | 2.7339 |
O3E···H1vii | 2.4133 | H4A···C9A | 2.5684 |
O3E···H7Avii | 2.3435 | H4B···O2Dviii | 1.9766 |
O3E···H11Ax | 2.8245 | H4B···O3Bviii | 2.6709 |
O3E···H8Cvii | 2.7116 | H4B···H3A | 2.2099 |
N1···O3Ex | 3.177 (6) | H4B···N1Dviii | 2.9488 |
N1···O1Ex | 2.880 (5) | H5···H4 | 2.2431 |
N1···O1Dx | 3.243 (5) | H5···O2D | 2.1676 |
N1A···O3C | 2.778 (4) | H5···N1D | 2.9162 |
N1A···O2D | 3.219 (5) | H5···O3B | 2.4560 |
N1B···C2Aiv | 3.431 (5) | H6···O2D | 2.9114 |
N1C···C4 | 3.221 (6) | H6···C9 | 2.5288 |
N1C···N3 | 3.292 (5) | H6···O3D | 2.5132 |
N1E···N2Aiv | 3.282 (6) | H6···C10 | 2.9253 |
N1E···N4 | 3.119 (6) | H7···C9 | 2.6014 |
N2···O1Ex | 3.056 (5) | H7···C14 | 3.0044 |
N2···O2Cv | 3.114 (5) | H7A···O3Ex | 2.3435 |
N2···O1Cv | 2.848 (5) | H7A···H1 | 2.4348 |
N2···O1B | 2.901 (5) | H8A···Cl1Ai | 3.1000 |
N2A···O2Evi | 2.794 (5) | H8B···Cl1Ai | 3.1220 |
N2A···N1Evi | 3.282 (6) | H8B···Cl1Axi | 3.0647 |
N2A···O1C | 2.784 (4) | H8C···H1 | 2.4345 |
N2A···O1Evi | 2.981 (5) | H8C···N1 | 2.7532 |
N3···O3B | 2.722 (4) | H8C···O3Ex | 2.7116 |
N3···N1C | 3.292 (5) | H10···O3E | 2.7513 |
N3A···O2Dviii | 3.268 (5) | H10···H11Ax | 2.4674 |
N3A···O1Dviii | 2.765 (5) | H10A···O2Evii | 2.4947 |
N4···O2D | 2.832 (4) | H11A···O3Evii | 2.8245 |
N4···N1E | 3.119 (6) | H11A···H10vii | 2.4674 |
N4···C10 | 3.396 (7) | H14···O3C | 2.7528 |
N4···O3D | 3.050 (5) | H14A···O2Cii | 2.7469 |
N4···O3B | 3.154 (5) | H14A···H83A | 2.5845 |
N4···O2E | 3.086 (5) | H71A···C14 | 3.0944 |
N4A···O3Bviii | 3.028 (4) | H71A···H1A | 2.3398 |
N4A···O2Bviii | 2.855 (5) | H71A···O3C | 2.8546 |
N4A···C10A | 3.308 (6) | H71B···C9A | 2.6396 |
N4A···O2Dviii | 2.813 (5) | H71B···C14A | 3.0360 |
N1···H8C | 2.7532 | H71B···Cl1i | 3.1037 |
N1A···H81A | 2.9000 | H81A···O3C | 2.8447 |
N1B···H4Aviii | 2.7616 | H81A···N1A | 2.9000 |
N1B···H4 | 2.5739 | H81A···O2Bvi | 2.9059 |
N1C···H2B | 2.8846 | H82A···Cl1Aix | 3.1375 |
N1C···H3v | 2.9365 | H83A···C14A | 3.0825 |
N1C···H1A | 2.7129 | H83A···H14A | 2.5845 |
C2—N1—C6 | 122.9 (3) | C8—C7—H7 | 109.37 |
C2—N3—C4 | 122.7 (3) | C6—C7—H7 | 109.31 |
C2—N1—H1 | 118.52 | H7—C7—H7A | 107.97 |
C6—N1—H1 | 118.61 | C8—C7—H7A | 109.69 |
C2—N2—H2 | 119.92 | C7—C8—H8A | 109.80 |
C2—N2—H3 | 120.12 | H8A—C8—H8C | 109.45 |
H2—N2—H3 | 119.96 | C7—C8—H8C | 109.40 |
C4—N3—H4 | 118.71 | C7—C8—H8B | 109.23 |
C2—N3—H4 | 118.58 | H8B—C8—H8C | 109.35 |
C4—N4—H6 | 119.95 | H8A—C8—H8B | 109.60 |
H5—N4—H6 | 119.98 | C9—C10—H10 | 119.40 |
C4—N4—H5 | 120.07 | C11—C10—H10 | 119.57 |
C2A—N1A—C6A | 122.9 (3) | C12—C11—H11 | 119.80 |
C2A—N3A—C4A | 123.0 (3) | C10—C11—H11 | 120.00 |
C6A—N1A—H1A | 118.60 | C14—C13—H13 | 119.69 |
C2A—N1A—H1A | 118.50 | C12—C13—H13 | 119.70 |
C2A—N2A—H2A | 119.80 | C9—C14—H14 | 120.17 |
H2A—N2A—H2B | 120.11 | C13—C14—H14 | 119.96 |
C2A—N2A—H2B | 120.08 | N1A—C2A—N3A | 117.6 (4) |
C4A—N3A—H3A | 118.50 | N2A—C2A—N3A | 121.4 (4) |
C2A—N3A—H3A | 118.55 | N1A—C2A—N2A | 121.0 (3) |
H4A—N4A—H4B | 119.82 | N4A—C4A—C5A | 123.9 (4) |
C4A—N4A—H4A | 120.16 | N3A—C4A—N4A | 117.5 (4) |
C4A—N4A—H4B | 120.02 | N3A—C4A—C5A | 118.6 (3) |
O2B—N1B—O3B | 119.8 (3) | C6A—C5A—C9A | 121.8 (3) |
O1B—N1B—O3B | 120.0 (4) | C4A—C5A—C9A | 119.8 (3) |
O1B—N1B—O2B | 120.2 (4) | C4A—C5A—C6A | 118.4 (4) |
O2C—N1C—O3C | 120.9 (4) | C5A—C6A—C7A | 125.9 (4) |
O1C—N1C—O2C | 120.1 (4) | N1A—C6A—C7A | 114.6 (3) |
O1C—N1C—O3C | 119.0 (3) | N1A—C6A—C5A | 119.5 (4) |
O1D—N1D—O2D | 117.8 (4) | C6A—C7A—C8A | 113.9 (4) |
O1D—N1D—O3D | 121.6 (4) | C5A—C9A—C14A | 120.5 (3) |
O2D—N1D—O3D | 120.6 (3) | C5A—C9A—C10A | 120.3 (4) |
O1E—N1E—O3E | 119.3 (4) | C10A—C9A—C14A | 119.2 (4) |
O1E—N1E—O2E | 121.6 (4) | C9A—C10A—C11A | 120.4 (4) |
O2E—N1E—O3E | 119.1 (4) | C10A—C11A—C12A | 119.3 (4) |
N1—C2—N3 | 117.7 (4) | C11A—C12A—C13A | 121.3 (4) |
N1—C2—N2 | 122.2 (3) | Cl1A—C12A—C11A | 119.3 (4) |
N2—C2—N3 | 120.0 (3) | Cl1A—C12A—C13A | 119.5 (4) |
N3—C4—C5 | 118.9 (3) | C12A—C13A—C14A | 119.1 (4) |
N4—C4—C5 | 123.2 (4) | C9A—C14A—C13A | 120.8 (4) |
N3—C4—N4 | 117.9 (3) | C8A—C7A—H71A | 108.68 |
C4—C5—C6 | 117.8 (4) | C8A—C7A—H71B | 108.70 |
C6—C5—C9 | 123.6 (3) | C6A—C7A—H71B | 108.81 |
C4—C5—C9 | 118.6 (3) | C6A—C7A—H71A | 108.78 |
N1—C6—C7 | 115.0 (3) | H71A—C7A—H71B | 107.79 |
C5—C6—C7 | 125.0 (4) | H81A—C8A—H83A | 109.44 |
N1—C6—C5 | 119.9 (3) | H82A—C8A—H83A | 109.59 |
C6—C7—C8 | 110.7 (3) | H81A—C8A—H82A | 109.50 |
C5—C9—C10 | 120.1 (4) | C7A—C8A—H81A | 109.12 |
C10—C9—C14 | 118.6 (4) | C7A—C8A—H82A | 110.02 |
C5—C9—C14 | 121.3 (4) | C7A—C8A—H83A | 109.16 |
C9—C10—C11 | 121.0 (5) | C9A—C10A—H10A | 120.01 |
C10—C11—C12 | 120.2 (5) | C11A—C10A—H10A | 119.63 |
Cl1—C12—C13 | 120.1 (4) | C10A—C11A—H11A | 120.19 |
C11—C12—C13 | 119.6 (5) | C12A—C11A—H11A | 120.53 |
Cl1—C12—C11 | 120.3 (4) | C12A—C13A—H13A | 120.33 |
C12—C13—C14 | 120.6 (5) | C14A—C13A—H13A | 120.54 |
C9—C14—C13 | 119.9 (5) | C13A—C14A—H14A | 119.59 |
C6—C7—H7A | 109.72 | C9A—C14A—H14A | 119.65 |
C6—N1—C2—N2 | −178.9 (4) | C10—C9—C14—C13 | 1.8 (6) |
C6—N1—C2—N3 | 1.7 (5) | C5—C9—C10—C11 | 179.4 (5) |
C2—N1—C6—C5 | 1.3 (5) | C9—C10—C11—C12 | −0.7 (9) |
C2—N1—C6—C7 | −175.9 (3) | C10—C11—C12—C13 | 2.4 (8) |
C4—N3—C2—N1 | −3.2 (5) | C10—C11—C12—Cl1 | −178.1 (5) |
C4—N3—C2—N2 | 177.5 (4) | C11—C12—C13—C14 | −2.1 (7) |
C2—N3—C4—N4 | 179.8 (4) | Cl1—C12—C13—C14 | 178.4 (4) |
C2—N3—C4—C5 | 1.5 (5) | C12—C13—C14—C9 | 0.0 (7) |
C2A—N1A—C6A—C7A | 177.8 (3) | N3A—C4A—C5A—C6A | −0.6 (5) |
C6A—N1A—C2A—N2A | −178.2 (4) | N3A—C4A—C5A—C9A | −179.9 (3) |
C6A—N1A—C2A—N3A | 1.0 (5) | N4A—C4A—C5A—C6A | 179.2 (4) |
C2A—N1A—C6A—C5A | −1.5 (5) | N4A—C4A—C5A—C9A | −0.1 (6) |
C4A—N3A—C2A—N2A | 178.9 (4) | C4A—C5A—C6A—N1A | 1.3 (6) |
C2A—N3A—C4A—N4A | −179.7 (4) | C4A—C5A—C6A—C7A | −178.0 (4) |
C2A—N3A—C4A—C5A | 0.1 (5) | C9A—C5A—C6A—N1A | −179.4 (3) |
C4A—N3A—C2A—N1A | −0.3 (5) | C9A—C5A—C6A—C7A | 1.3 (6) |
N3—C4—C5—C9 | −180.0 (3) | C4A—C5A—C9A—C14A | −106.0 (4) |
N3—C4—C5—C6 | 1.6 (5) | C6A—C5A—C9A—C10A | −105.4 (5) |
N4—C4—C5—C9 | 1.8 (6) | C6A—C5A—C9A—C14A | 74.7 (5) |
N4—C4—C5—C6 | −176.6 (4) | C4A—C5A—C9A—C10A | 73.9 (5) |
C4—C5—C6—N1 | −2.9 (6) | N1A—C6A—C7A—C8A | 79.8 (5) |
C6—C5—C9—C14 | 81.8 (5) | C5A—C6A—C7A—C8A | −100.9 (5) |
C4—C5—C9—C14 | −96.5 (5) | C14A—C9A—C10A—C11A | −1.3 (6) |
C6—C5—C9—C10 | −99.0 (5) | C5A—C9A—C14A—C13A | −177.7 (4) |
C4—C5—C9—C10 | 82.6 (5) | C5A—C9A—C10A—C11A | 178.8 (4) |
C4—C5—C6—C7 | 174.0 (4) | C10A—C9A—C14A—C13A | 2.5 (6) |
C9—C5—C6—C7 | −4.4 (6) | C9A—C10A—C11A—C12A | −0.7 (7) |
C9—C5—C6—N1 | 178.7 (3) | C10A—C11A—C12A—Cl1A | −177.5 (4) |
N1—C6—C7—C8 | 69.4 (4) | C10A—C11A—C12A—C13A | 1.6 (7) |
C5—C6—C7—C8 | −107.7 (5) | C11A—C12A—C13A—C14A | −0.4 (7) |
C5—C9—C14—C13 | −179.1 (4) | Cl1A—C12A—C13A—C14A | 178.6 (4) |
C14—C9—C10—C11 | −1.4 (8) | C12A—C13A—C14A—C9A | −1.6 (7) |
Symmetry codes: (i) −x, y, −z+1/2; (ii) x, −y, z+1/2; (iii) x, y, z+1; (iv) −x+1/2, y+1/2, −z+1/2; (v) −x+1/2, −y+1/2, −z; (vi) −x+1/2, y−1/2, −z+1/2; (vii) x, −y+1, z+1/2; (viii) −x+1/2, −y+1/2, −z+1; (ix) x, −y, z−1/2; (x) x, −y+1, z−1/2; (xi) x, y, z−1. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1Ex | 0.86 | 2.09 | 2.880 (5) | 153 |
N1—H1···O3Ex | 0.86 | 2.41 | 3.177 (6) | 148 |
N1A—H1A···O3C | 0.86 | 1.92 | 2.778 (4) | 175 |
N2—H2···O1B | 0.86 | 2.07 | 2.901 (5) | 163 |
N2A—H2A···O2Evi | 0.86 | 2.03 | 2.794 (5) | 148 |
N2A—H2B···O1C | 0.86 | 1.93 | 2.784 (4) | 171 |
N2—H3···O1Ex | 0.86 | 2.33 | 3.056 (5) | 142 |
N2—H3···O1Cv | 0.86 | 2.15 | 2.848 (5) | 138 |
N3A—H3A···O1Dviii | 0.86 | 1.92 | 2.765 (5) | 167 |
N3—H4···O1B | 0.86 | 2.58 | 3.290 (5) | 141 |
N3—H4···O3B | 0.86 | 1.88 | 2.722 (4) | 164 |
N4A—H4A···O2Bviii | 0.86 | 2.07 | 2.855 (5) | 152 |
N4A—H4B···O2Dviii | 0.86 | 1.98 | 2.813 (5) | 164 |
N4—H5···O2D | 0.86 | 2.17 | 2.832 (4) | 134 |
N4—H5···O3B | 0.86 | 2.46 | 3.154 (5) | 139 |
N4—H6···O3D | 0.86 | 2.51 | 3.050 (5) | 121 |
Symmetry codes: (v) −x+1/2, −y+1/2, −z; (vi) −x+1/2, y−1/2, −z+1/2; (viii) −x+1/2, −y+1/2, −z+1; (x) x, −y+1, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C12H15ClN42+·2NO3− |
Mr | 374.75 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 295 |
a, b, c (Å) | 32.700 (7), 12.926 (3), 16.065 (3) |
β (°) | 104.73 (3) |
V (Å3) | 6567 (3) |
Z | 16 |
Radiation type | Mo Kα |
µ (mm−1) | 0.28 |
Crystal size (mm) | 0.4 × 0.3 × 0.2 |
Data collection | |
Diffractometer | Kuma KM4CCD κ-geometry diffractometer |
Absorption correction | Multi-scan (XEMP, Siemens, 1990) |
Tmin, Tmax | 0.893, 0.952 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 27180, 6490, 3225 |
Rint | 0.048 |
(sin θ/λ)max (Å−1) | 0.618 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.059, 0.231, 1.03 |
No. of reflections | 6490 |
No. of parameters | 451 |
H-atom treatment | All H-atom parameters refined |
Δρmax, Δρmin (e Å−3) | 0.46, −0.64 |
Computer programs: CrysAlis CCD (Oxford Diffraction, 2000), CrysAlis RED (Oxford Diffraction, 2000), CrysAlis RED, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), ORTEPII (Johnson, 1976) and PLATON (Spek, 2003), PLATON.
C5—C9 | 1.492 (6) | C5A—C9A | 1.484 (5) |
C2—N1—C6 | 122.9 (3) | O2D—N1D—O3D | 120.6 (3) |
C2—N3—C4 | 122.7 (3) | O1E—N1E—O3E | 119.3 (4) |
C2A—N1A—C6A | 122.9 (3) | O1E—N1E—O2E | 121.6 (4) |
C2A—N3A—C4A | 123.0 (3) | O2E—N1E—O3E | 119.1 (4) |
O1D—N1D—O2D | 117.8 (4) | N1A—C6A—C5A | 119.5 (4) |
O1D—N1D—O3D | 121.6 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1Ei | 0.86 | 2.09 | 2.880 (5) | 153 |
N1—H1···O3Ei | 0.86 | 2.41 | 3.177 (6) | 148 |
N1A—H1A···O3C | 0.86 | 1.92 | 2.778 (4) | 175 |
N2—H2···O1B | 0.86 | 2.07 | 2.901 (5) | 163 |
N2A—H2A···O2Eii | 0.86 | 2.03 | 2.794 (5) | 148 |
N2A—H2B···O1C | 0.86 | 1.93 | 2.784 (4) | 171 |
N2—H3···O1Ei | 0.86 | 2.33 | 3.056 (5) | 142 |
N2—H3···O1Ciii | 0.86 | 2.15 | 2.848 (5) | 138 |
N3A—H3A···O1Div | 0.86 | 1.92 | 2.765 (5) | 167 |
N3—H4···O1B | 0.86 | 2.58 | 3.290 (5) | 141 |
N3—H4···O3B | 0.86 | 1.88 | 2.722 (4) | 164 |
N4A—H4A···O2Biv | 0.86 | 2.07 | 2.855 (5) | 152 |
N4A—H4B···O2Div | 0.86 | 1.98 | 2.813 (5) | 164 |
N4—H5···O2D | 0.86 | 2.17 | 2.832 (4) | 134 |
N4—H5···O3B | 0.86 | 2.46 | 3.154 (5) | 139 |
N4—H6···O3D | 0.86 | 2.51 | 3.050 (5) | 121 |
Symmetry codes: (i) x, −y+1, z−1/2; (ii) −x+1/2, y−1/2, −z+1/2; (iii) −x+1/2, −y+1/2, −z; (iv) −x+1/2, −y+1/2, −z+1. |
Pyrimethamine is an antifolate drug used in the treatment of malaria. In the chemotherapy of malaria and neoplastic diseases, substituted 2,4-diamino pyrimidines are widely employed as metabolic inhibitors of pathways leading to the synthesis of proteins and nucleic acids (Hitchings & Burchall, 1965). Pyrimethamine acts against malarial parasites by selectively inhibiting their dihydrofolate reductase–thymidylate synthase (Sardarian et al., 2003). Hydrogen bonding plays a key role in molecular recognition (Goswami & Ghosh, 1997) and crystal engineering (Goswami et al., 1999). The design of a number of supramolecular nanoarchitectures, such as layers, ribbons, rosettes, rods, tapes, tubes, sheets and spheres, can be achieved through N—H···O and O—H···O hydrogen bonds (Vishweshwar et al., 2002; Aitipamula et al., 2002). The crystal structure of pyrimethamine (PMN) itself has been reported from our laboratory (Sethuraman & Muthiah, 2002). The crystal structures of trimethoprim nitrate (Murugesan & Muthiah, 1997), PMN hydrogen maleate, PMN hydrogen succinate, PMN hydrogen phthalate and PMN fumarate (Sethuraman et al., 2003), and PMN hydrogen glutarate and PMN formate (Stanley et al., 2002), have also been reported from our laboratory. In this paper, the conformation and hydrogen-bonding patterns of pyrimethamine dinitrate (PMNN), (I), are reported.
The asymmetric unit of (I) contains two pyrimethamine cations and four nitrate anions (Fig. 1). Both the PMN moieties are protonated at N1, N3, N1A and N3A of the pyrimidine moiety, which is evident from the increase in the internal angles C2—N1—C6, C2—N3—C4, C2A—N1A—C6A and C2A—N3A—C4A at the corresponding N atoms. The angles (Table 1) are smaller than the values observed in neutral pyrimethamine [116.25 (18), 116.38 (17), 116.09 (18) and 116.47°, respectively; Sethuraman & Muthiah, 2002]. Usually, only one pyrimidine N atom (N1 or N1A) is protonated in the pyrimethamine molecule, but in (I) all the pyrimidine N atoms are protonated in both the pyrimethamine molecules.
The dihedral angle between the pyrimidine plane and the substituted phenyl plane is 82.5 (2)° in one molecule and 73.9 (2)° in the other. Similar dihedral angles are seen in the crystal structures of neutral pyrimethamine [74.4 (1)° in molecule A and 82.4 (1)° in molecule B; Sethuraman & Muthiah, 2002], 2,4-diamino-5-(3',4'-dichlorophenyl)-6-methylpyrimidinium ethanesulfonate (71.1°; Cody, 1983) and metoprine (78.1° in molecule A and 91.6° in molecule B; De et al., 1989). The two torsion angles (C5—C6—C7—C8 and C5A—C6A—C7A—C8A) of the PMN moieties are −107.7 (5) and −100.9 (5)°, respectively. These values are close to those observed in modelling studies of dihydrofolate reductase–pyrimethamine complexes, which indicates that these angles play an important role in the proper docking of the drug molecule in the active site of the enzyme (Sansom et al., 1989). The lengths of the bonds connecting the pyrimidine and phenyl rings (Table 1) are in close agreement with those reported for metoprine (De et al., 1989). The different mutual arrangements of the p-chlorophenyl and ethyl substituents in the two independent molecules of (I) are illustrated in Fig. 2.
The protonated atom N1A and the 2-amino group are hydrogen bonded to the O atoms of the nitrate anion (O1C and O3C), leading to an eight-membered ring formed via N—H···O bonds (Fig. 3). The other protonation sites, atom N3A and the 4-amino group, are hydrogen bonded to the O atoms of the other nitrate anion (atoms O1D and O2D), forming a similar cyclic hydrogen-bonded ring. Both can be designated by graph-set notation R22(8) (Etter, 1990; Bernstein et al., 1995). This type of interaction is similar to the carboxylate–trimethoprim interaction observed in the trimethoprim cation–dihydrofolate reductase complex (Kuyper, 1990) and to the cyclic hydrogen-bonded motif observed in many organic crystal structures (Allan et al., 1998).
In the other pyrimethamine molecule, the protonated N atom (N1) of the pyrimidine ring forms a three-centre hydrogen bond with two O atoms of the nitrate ion (atoms O1E and O3E). The other protonated N atom (N3) forms a three-centre hydrogen bond, of similar type but weaker, with another nitrate ion (atoms O1B and O3B) (Table 2). The protonated N atom (N3), 2-amino group and 4-amino group are hydrogen bonded with two O atoms of the same nitrate ion (atoms O1B and O3B), forming both three-centre and bifurcated hydrogen bonds. The protonated N atom (donor; N1) and the 2-amino group form hydrogen bonds with the O atom of the nitrate ion (acceptor; O1E), leading to a six-membered ring which can be designated by graph-set notation R21(6) (Fig.3). This type of packing is commonly observed in PMN hydrogen maleate, PMN hydrogen succinate and PMN hydrogenphthalate (Sethuraman et al., 2003).