The title compound, C19H22BrN5O6·0.5CH3OH, is a derivative of glycoluril, with two ethyl acetate substituents on the `convex' face of the glycoluril system. The N atoms from separate rings of the glycouril unit are incorporated into a triazacyclohexane ring, in which the third N atom bears a 4-bromobenzyl substituent. The title compound, containing two free syn-urea NH groups and two ureidyl C=O, assembles into one-dimensional helical hydrogen-bonded chains in the solid state, running parallel to the [101] direction. One ethyl group is disordered over two positions; the site-occupancy factors are ca 0.52 and 0.48.
Supporting information
CCDC reference: 672963
Key indicators
- Single-crystal X-ray study
- T = 294 K
- Mean (C-C) = 0.005 Å
- Disorder in main residue
- R factor = 0.045
- wR factor = 0.136
- Data-to-parameter ratio = 13.5
checkCIF/PLATON results
No syntax errors found
Alert level A
PLAT773_ALERT_2_A Suspect C-C Bond in CIF: C20 -C20 .. 1.73 Ang.
| Author Response: The bond should be omitted as the methanol is disordered.
|
Alert level B
PLAT220_ALERT_2_B Large Non-Solvent C Ueq(max)/Ueq(min) ... 4.20 Ratio
PLAT222_ALERT_3_B Large Non-Solvent H Ueq(max)/Ueq(min) ... 4.43 Ratio
Alert level C
PLAT041_ALERT_1_C Calc. and Rep. SumFormula Strings Differ .... ?
PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ?
PLAT045_ALERT_1_C Calculated and Reported Z Differ by ............ 0.50 Ratio
PLAT141_ALERT_4_C su on a - Axis Small or Missing (x 100000) ..... 14 Ang.
PLAT213_ALERT_2_C Atom C5' has ADP max/min Ratio ............. 3.10 prola
PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C4
PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C5'
PLAT301_ALERT_3_C Main Residue Disorder ......................... 6.00 Perc.
PLAT302_ALERT_4_C Anion/Solvent Disorder ......................... 33.00 Perc.
PLAT309_ALERT_2_C Single Bonded Oxygen (C-O .GT. 1.3 Ang) ........ O7
PLAT432_ALERT_2_C Short Inter X...Y Contact N5 .. C20 .. 2.99 Ang.
PLAT720_ALERT_4_C Number of Unusual/Non-Standard Label(s) ........ 5
Alert level G
FORMU01_ALERT_1_G There is a discrepancy between the atom counts in the
_chemical_formula_sum and _chemical_formula_moiety. This is
usually due to the moiety formula being in the wrong format.
Atom count from _chemical_formula_sum: C19.5 H22 Br1 N5 O6.5
Atom count from _chemical_formula_moiety:C19.5 H24 Br1 N5 O6.5
PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 31
1 ALERT level A = In general: serious problem
2 ALERT level B = Potentially serious problem
12 ALERT level C = Check and explain
2 ALERT level G = General alerts; check
4 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
7 ALERT type 2 Indicator that the structure model may be wrong or deficient
3 ALERT type 3 Indicator that the structure quality may be low
3 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
The title compound was synthesized according to the procedure of Li et
al. (2006) in 56% isolated yield. Crystals of (I) suitable for X-ray data
collection were obtained by slow evaporation of a 1,2-dichloroethane and
methanol solution in ratio of 4:1 at 293 K.
All H atoms bonded to C atoms were initially located in difference Fourier maps.
They were then constrained to their ideal geometry with C–H=0.96 Å
(methyl), 0.97 Å (methylene), with their Uiso values being set to
1.5 times of Ueq (methyl C) and 1.2 times of Ueq(methylene).
The H atoms of the amine N atoms were found in difference maps and refined
with Uiso(H) set to 1.2Ueq(N) and the N—H distances
refined freely. The H atoms on the disordered methanol solvate were not
included in the model. The occupancies of the disordered atoms C5/C5' and
C6/C6' was refined to 0.518 (12)/0.482 (12).
Data collection: SMART (Bruker, 2001); cell refinement: SAINT (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: PLATON (Spek, 2003).
Diethyl 6-(4-bromophenyl)-1,4-dioxoperhydro-2,3,4a,6,7a-
pentaazacyclopenta[cd]indene-2a,7 b-dicarboxylate methanol hemisolvate
top
Crystal data top
C19H22BrN5O6·0.5CH4O | F(000) = 2088 |
Mr = 510.33 | Dx = 1.538 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 6618 reflections |
a = 24.06370 (14) Å | θ = 2.7–23.9° |
b = 14.6142 (7) Å | µ = 1.92 mm−1 |
c = 15.1014 (7) Å | T = 294 K |
β = 123.918 (1)° | Block, colorless |
V = 4407.0 (3) Å3 | 0.30 × 0.20 × 0.20 mm |
Z = 8 | |
Data collection top
Bruker SMART 4K CCD area-detector diffractometer | 2828 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.081 |
Graphite monochromator | θmax = 26.0°, θmin = 1.7° |
ϕ and ω scans | h = −26→29 |
22693 measured reflections | k = −18→18 |
4339 independent reflections | l = −17→18 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.046 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.136 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0787P)2] where P = (Fo2 + 2Fc2)/3 |
4339 reflections | (Δ/σ)max = 0.002 |
322 parameters | Δρmax = 0.50 e Å−3 |
31 restraints | Δρmin = −0.38 e Å−3 |
Crystal data top
C19H22BrN5O6·0.5CH4O | V = 4407.0 (3) Å3 |
Mr = 510.33 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 24.06370 (14) Å | µ = 1.92 mm−1 |
b = 14.6142 (7) Å | T = 294 K |
c = 15.1014 (7) Å | 0.30 × 0.20 × 0.20 mm |
β = 123.918 (1)° | |
Data collection top
Bruker SMART 4K CCD area-detector diffractometer | 2828 reflections with I > 2σ(I) |
22693 measured reflections | Rint = 0.081 |
4339 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.046 | 31 restraints |
wR(F2) = 0.136 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 0.50 e Å−3 |
4339 reflections | Δρmin = −0.38 e Å−3 |
322 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
Br1 | 0.09382 (2) | 1.15884 (3) | 0.26032 (4) | 0.0817 (2) | |
C1 | 0.03759 (14) | 0.59152 (19) | −0.0950 (2) | 0.0388 (6) | |
C2 | 0.20106 (13) | 0.70999 (18) | 0.0667 (2) | 0.0377 (6) | |
C3 | 0.14998 (13) | 0.57862 (18) | −0.0369 (2) | 0.0363 (6) | |
C4 | 0.18373 (16) | 0.4953 (2) | −0.0486 (3) | 0.0496 (8) | |
C5 | 0.2896 (5) | 0.4035 (6) | 0.0604 (12) | 0.103 (4) | 0.518 (12) |
H5A | 0.3077 | 0.3821 | 0.1324 | 0.123* | 0.518 (12) |
H5B | 0.2652 | 0.3543 | 0.0102 | 0.123* | 0.518 (12) |
C6 | 0.3427 (5) | 0.4415 (7) | 0.0492 (10) | 0.106 (4) | 0.518 (12) |
H6A | 0.3236 | 0.4576 | −0.0240 | 0.159* | 0.518 (12) |
H6B | 0.3771 | 0.3964 | 0.0713 | 0.159* | 0.518 (12) |
H6C | 0.3617 | 0.4950 | 0.0931 | 0.159* | 0.518 (12) |
C5' | 0.2856 (6) | 0.4261 (9) | 0.0065 (8) | 0.097 (4) | 0.482 (12) |
H5'1 | 0.2560 | 0.3833 | −0.0495 | 0.116* | 0.482 (12) |
H5'2 | 0.3091 | 0.4618 | −0.0171 | 0.116* | 0.482 (12) |
C6' | 0.3339 (7) | 0.3768 (10) | 0.1071 (9) | 0.139 (6) | 0.482 (12) |
H6'1 | 0.3760 | 0.4085 | 0.1445 | 0.208* | 0.482 (12) |
H6'2 | 0.3403 | 0.3158 | 0.0907 | 0.208* | 0.482 (12) |
H6'3 | 0.3167 | 0.3741 | 0.1511 | 0.208* | 0.482 (12) |
C7 | 0.14412 (13) | 0.57875 (17) | 0.0619 (2) | 0.0331 (6) | |
C8 | 0.17281 (14) | 0.49725 (19) | 0.1388 (2) | 0.0418 (7) | |
C9 | 0.1625 (2) | 0.3379 (2) | 0.1509 (3) | 0.0704 (11) | |
H9A | 0.2080 | 0.3427 | 0.2134 | 0.084* | |
H9B | 0.1328 | 0.3296 | 0.1745 | 0.084* | |
C10 | 0.1570 (3) | 0.2609 (3) | 0.0866 (4) | 0.1003 (15) | |
H10A | 0.1120 | 0.2568 | 0.0247 | 0.150* | |
H10B | 0.1681 | 0.2057 | 0.1277 | 0.150* | |
H10C | 0.1872 | 0.2689 | 0.0647 | 0.150* | |
C11 | 0.05125 (14) | 0.6256 (2) | 0.0780 (2) | 0.0398 (6) | |
H11A | 0.0029 | 0.6327 | 0.0346 | 0.048* | |
H11B | 0.0628 | 0.5857 | 0.1372 | 0.048* | |
C12 | 0.15451 (14) | 0.7051 (2) | 0.1800 (2) | 0.0396 (6) | |
H12A | 0.1694 | 0.6682 | 0.2429 | 0.047* | |
H12B | 0.1749 | 0.7651 | 0.2038 | 0.047* | |
C13 | 0.05662 (15) | 0.7874 (2) | 0.0380 (2) | 0.0472 (7) | |
H13A | 0.0095 | 0.7770 | −0.0159 | 0.057* | |
H13B | 0.0805 | 0.7856 | 0.0034 | 0.057* | |
C14 | 0.06560 (14) | 0.8802 (2) | 0.0884 (2) | 0.0448 (7) | |
C15 | 0.12066 (16) | 0.9345 (2) | 0.1205 (3) | 0.0539 (8) | |
H15 | 0.1524 | 0.9155 | 0.1076 | 0.065* | |
C16 | 0.12924 (17) | 1.0173 (2) | 0.1718 (3) | 0.0578 (8) | |
H16 | 0.1673 | 1.0524 | 0.1955 | 0.069* | |
C17 | 0.08157 (17) | 1.0465 (2) | 0.1871 (3) | 0.0540 (8) | |
C18 | 0.02511 (18) | 0.9961 (2) | 0.1529 (3) | 0.0589 (9) | |
H18 | −0.0078 | 1.0178 | 0.1618 | 0.071* | |
C19 | 0.01780 (17) | 0.9126 (2) | 0.1050 (3) | 0.0556 (8) | |
H19 | −0.0199 | 0.8773 | 0.0833 | 0.067* | |
C20 | 0.0414 (9) | 0.7513 (8) | 0.2701 (12) | 0.145 (6) | 0.50 |
N1 | 0.08160 (12) | 0.58339 (18) | −0.12421 (18) | 0.0457 (6) | |
H1 | 0.0683 (15) | 0.591 (2) | −0.1891 (11) | 0.055* | |
N2 | 0.18829 (12) | 0.66033 (15) | −0.0188 (2) | 0.0416 (6) | |
H2 | 0.2078 (14) | 0.673 (2) | −0.050 (2) | 0.050* | |
N3 | 0.07245 (10) | 0.58278 (14) | 0.01361 (17) | 0.0340 (5) | |
N4 | 0.17724 (11) | 0.66263 (14) | 0.11747 (18) | 0.0369 (5) | |
N5 | 0.08203 (11) | 0.71459 (15) | 0.11935 (17) | 0.0389 (5) | |
O1 | −0.02299 (10) | 0.60162 (15) | −0.15411 (15) | 0.0513 (5) | |
O2 | 0.22887 (10) | 0.78421 (13) | 0.09463 (17) | 0.0487 (5) | |
O3 | 0.15792 (14) | 0.44551 (19) | −0.1224 (2) | 0.0829 (8) | |
O4 | 0.24576 (13) | 0.4891 (2) | 0.0336 (3) | 0.0911 (9) | |
O5 | 0.21328 (12) | 0.50418 (16) | 0.23280 (18) | 0.0673 (7) | |
O6 | 0.14464 (12) | 0.42050 (14) | 0.08704 (17) | 0.0559 (6) | |
O7 | 0.0000 | 0.6840 (8) | 0.2500 | 0.259 (6) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Br1 | 0.1095 (4) | 0.0501 (2) | 0.0870 (4) | −0.00416 (19) | 0.0558 (3) | −0.00919 (18) |
C1 | 0.0356 (17) | 0.0446 (15) | 0.0341 (16) | −0.0026 (12) | 0.0182 (14) | −0.0042 (12) |
C2 | 0.0352 (15) | 0.0418 (16) | 0.0393 (17) | −0.0030 (12) | 0.0227 (14) | −0.0032 (12) |
C3 | 0.0356 (15) | 0.0450 (15) | 0.0316 (15) | −0.0021 (12) | 0.0208 (13) | −0.0032 (11) |
C4 | 0.052 (2) | 0.0520 (18) | 0.057 (2) | −0.0044 (15) | 0.0381 (18) | −0.0108 (16) |
C5 | 0.081 (6) | 0.132 (8) | 0.126 (8) | 0.021 (5) | 0.077 (6) | −0.005 (6) |
C6 | 0.086 (6) | 0.105 (7) | 0.137 (8) | −0.007 (5) | 0.069 (6) | −0.037 (6) |
C5' | 0.107 (7) | 0.102 (7) | 0.104 (7) | 0.075 (5) | 0.072 (6) | 0.024 (5) |
C6' | 0.136 (9) | 0.162 (9) | 0.117 (8) | 0.057 (7) | 0.070 (7) | −0.021 (7) |
C7 | 0.0320 (14) | 0.0369 (14) | 0.0297 (14) | −0.0039 (11) | 0.0168 (12) | −0.0024 (11) |
C8 | 0.0374 (16) | 0.0472 (17) | 0.0387 (18) | 0.0026 (13) | 0.0201 (15) | −0.0001 (13) |
C9 | 0.090 (3) | 0.050 (2) | 0.073 (3) | 0.0143 (18) | 0.047 (2) | 0.0213 (17) |
C10 | 0.151 (4) | 0.046 (2) | 0.126 (4) | 0.011 (2) | 0.091 (4) | 0.007 (2) |
C11 | 0.0394 (16) | 0.0507 (16) | 0.0359 (16) | −0.0030 (13) | 0.0251 (14) | −0.0018 (13) |
C12 | 0.0473 (17) | 0.0447 (16) | 0.0292 (15) | −0.0055 (13) | 0.0228 (14) | −0.0068 (12) |
C13 | 0.0502 (18) | 0.0537 (18) | 0.0413 (17) | 0.0043 (14) | 0.0278 (15) | 0.0044 (14) |
C14 | 0.0458 (17) | 0.0475 (16) | 0.0413 (17) | 0.0045 (14) | 0.0244 (15) | 0.0063 (14) |
C15 | 0.0523 (19) | 0.0483 (18) | 0.072 (2) | 0.0076 (14) | 0.0412 (19) | 0.0126 (16) |
C16 | 0.0521 (19) | 0.0439 (18) | 0.074 (2) | −0.0026 (14) | 0.0331 (18) | 0.0085 (16) |
C17 | 0.068 (2) | 0.0418 (17) | 0.0489 (19) | 0.0032 (16) | 0.0308 (18) | 0.0037 (14) |
C18 | 0.062 (2) | 0.060 (2) | 0.065 (2) | 0.0054 (17) | 0.0413 (19) | −0.0040 (17) |
C19 | 0.053 (2) | 0.061 (2) | 0.059 (2) | −0.0059 (15) | 0.0346 (18) | −0.0066 (16) |
C20 | 0.264 (17) | 0.088 (7) | 0.205 (14) | −0.024 (9) | 0.206 (15) | −0.019 (8) |
N1 | 0.0354 (14) | 0.0769 (18) | 0.0236 (13) | −0.0032 (12) | 0.0157 (12) | −0.0052 (12) |
N2 | 0.0499 (15) | 0.0457 (13) | 0.0437 (15) | −0.0092 (11) | 0.0350 (13) | −0.0068 (11) |
N3 | 0.0311 (12) | 0.0439 (13) | 0.0284 (12) | −0.0023 (9) | 0.0174 (10) | −0.0004 (9) |
N4 | 0.0376 (13) | 0.0408 (12) | 0.0349 (13) | −0.0068 (9) | 0.0217 (11) | −0.0069 (9) |
N5 | 0.0408 (14) | 0.0434 (13) | 0.0363 (13) | −0.0005 (10) | 0.0240 (12) | −0.0021 (10) |
O1 | 0.0347 (12) | 0.0783 (16) | 0.0351 (11) | 0.0017 (10) | 0.0159 (10) | −0.0034 (10) |
O2 | 0.0554 (13) | 0.0481 (12) | 0.0547 (13) | −0.0153 (10) | 0.0381 (11) | −0.0126 (10) |
O3 | 0.105 (2) | 0.0745 (17) | 0.089 (2) | −0.0117 (15) | 0.0669 (18) | −0.0389 (15) |
O4 | 0.0538 (16) | 0.0819 (19) | 0.118 (2) | 0.0206 (13) | 0.0355 (17) | −0.0182 (17) |
O5 | 0.0646 (15) | 0.0651 (15) | 0.0386 (14) | 0.0072 (12) | 0.0082 (13) | 0.0049 (11) |
O6 | 0.0678 (14) | 0.0384 (11) | 0.0448 (12) | −0.0010 (10) | 0.0211 (12) | 0.0051 (9) |
O7 | 0.349 (14) | 0.218 (10) | 0.433 (17) | 0.000 | 0.356 (15) | 0.000 |
Geometric parameters (Å, º) top
Br1—C17 | 1.908 (3) | C9—O6 | 1.452 (4) |
C1—O1 | 1.221 (3) | C9—H9A | 0.9700 |
C1—N1 | 1.361 (4) | C9—H9B | 0.9700 |
C1—N3 | 1.369 (4) | C10—H10A | 0.9600 |
C2—O2 | 1.220 (3) | C10—H10B | 0.9600 |
C2—N2 | 1.359 (3) | C10—H10C | 0.9600 |
C2—N4 | 1.373 (3) | C11—N5 | 1.453 (4) |
C3—N1 | 1.425 (4) | C11—N3 | 1.466 (3) |
C3—N2 | 1.439 (3) | C11—H11A | 0.9700 |
C3—C4 | 1.528 (4) | C11—H11B | 0.9700 |
C3—C7 | 1.576 (4) | C12—N5 | 1.455 (4) |
C4—O3 | 1.177 (4) | C12—N4 | 1.467 (3) |
C4—O4 | 1.307 (4) | C12—H12A | 0.9700 |
C5—C6 | 1.487 (9) | C12—H12B | 0.9700 |
C5—O4 | 1.537 (8) | C13—N5 | 1.475 (4) |
C5—H5A | 0.9700 | C13—C14 | 1.512 (4) |
C5—H5B | 0.9700 | C13—H13A | 0.9700 |
C6—H6A | 0.9600 | C13—H13B | 0.9700 |
C6—H6B | 0.9600 | C14—C15 | 1.379 (4) |
C6—H6C | 0.9600 | C14—C19 | 1.390 (4) |
C5'—C6' | 1.487 (9) | C15—C16 | 1.388 (5) |
C5'—O4 | 1.541 (7) | C15—H15 | 0.9300 |
C5'—H5'1 | 0.9700 | C16—C17 | 1.359 (5) |
C5'—H5'2 | 0.9700 | C16—H16 | 0.9300 |
C6'—H6'1 | 0.9600 | C17—C18 | 1.368 (5) |
C6'—H6'2 | 0.9600 | C18—C19 | 1.378 (4) |
C6'—H6'3 | 0.9600 | C18—H18 | 0.9300 |
C7—N4 | 1.448 (3) | C19—H19 | 0.9300 |
C7—N3 | 1.451 (3) | C20—O7 | 1.310 (13) |
C7—C8 | 1.532 (4) | C20—C20i | 1.73 (3) |
C8—O5 | 1.197 (3) | N1—H1 | 0.851 (10) |
C8—O6 | 1.318 (3) | N2—H2 | 0.85 (4) |
C9—C10 | 1.443 (6) | O7—C20i | 1.310 (13) |
| | | |
O1—C1—N1 | 126.9 (3) | N5—C11—H11A | 109.1 |
O1—C1—N3 | 124.8 (2) | N3—C11—H11A | 109.1 |
N1—C1—N3 | 108.2 (2) | N5—C11—H11B | 109.1 |
O2—C2—N2 | 126.4 (2) | N3—C11—H11B | 109.1 |
O2—C2—N4 | 125.1 (2) | H11A—C11—H11B | 107.8 |
N2—C2—N4 | 108.5 (2) | N5—C12—N4 | 112.4 (2) |
N1—C3—N2 | 115.0 (2) | N5—C12—H12A | 109.1 |
N1—C3—C4 | 110.2 (2) | N4—C12—H12A | 109.1 |
N2—C3—C4 | 111.0 (2) | N5—C12—H12B | 109.1 |
N1—C3—C7 | 102.07 (19) | N4—C12—H12B | 109.1 |
N2—C3—C7 | 101.9 (2) | H12A—C12—H12B | 107.9 |
C4—C3—C7 | 116.4 (2) | N5—C13—C14 | 110.6 (2) |
O3—C4—O4 | 125.2 (3) | N5—C13—H13A | 109.5 |
O3—C4—C3 | 124.6 (3) | C14—C13—H13A | 109.5 |
O4—C4—C3 | 110.1 (3) | N5—C13—H13B | 109.5 |
C6—C5—O4 | 100.0 (7) | C14—C13—H13B | 109.5 |
C6—C5—H5A | 111.8 | H13A—C13—H13B | 108.1 |
O4—C5—H5A | 111.8 | C15—C14—C19 | 118.0 (3) |
C6—C5—H5B | 111.8 | C15—C14—C13 | 122.2 (3) |
O4—C5—H5B | 111.8 | C19—C14—C13 | 119.8 (3) |
H5A—C5—H5B | 109.5 | C14—C15—C16 | 120.8 (3) |
C6'—C5'—O4 | 105.4 (7) | C14—C15—H15 | 119.6 |
C6'—C5'—H5'1 | 110.7 | C16—C15—H15 | 119.6 |
O4—C5'—H5'1 | 110.7 | C17—C16—C15 | 119.4 (3) |
C6'—C5'—H5'2 | 110.7 | C17—C16—H16 | 120.3 |
O4—C5'—H5'2 | 110.7 | C15—C16—H16 | 120.3 |
H5'1—C5'—H5'2 | 108.8 | C16—C17—C18 | 121.4 (3) |
C5'—C6'—H6'1 | 109.5 | C16—C17—Br1 | 119.8 (3) |
C5'—C6'—H6'2 | 109.5 | C18—C17—Br1 | 118.8 (2) |
H6'1—C6'—H6'2 | 109.5 | C17—C18—C19 | 118.9 (3) |
C5'—C6'—H6'3 | 109.5 | C17—C18—H18 | 120.5 |
H6'1—C6'—H6'3 | 109.5 | C19—C18—H18 | 120.5 |
H6'2—C6'—H6'3 | 109.5 | C18—C19—C14 | 121.3 (3) |
N4—C7—N3 | 111.9 (2) | C18—C19—H19 | 119.3 |
N4—C7—C8 | 110.5 (2) | C14—C19—H19 | 119.3 |
N3—C7—C8 | 108.6 (2) | O7—C20—C20i | 48.6 (8) |
N4—C7—C3 | 103.8 (2) | C1—N1—C3 | 114.2 (2) |
N3—C7—C3 | 103.5 (2) | C1—N1—H1 | 120 (2) |
C8—C7—C3 | 118.4 (2) | C3—N1—H1 | 125 (2) |
O5—C8—O6 | 125.7 (3) | C2—N2—C3 | 113.9 (2) |
O5—C8—C7 | 123.9 (3) | C2—N2—H2 | 121 (2) |
O6—C8—C7 | 110.3 (2) | C3—N2—H2 | 124 (2) |
C10—C9—O6 | 108.7 (3) | C1—N3—C7 | 111.6 (2) |
C10—C9—H9A | 110.0 | C1—N3—C11 | 123.1 (2) |
O6—C9—H9A | 110.0 | C7—N3—C11 | 116.1 (2) |
C10—C9—H9B | 110.0 | C2—N4—C7 | 111.7 (2) |
O6—C9—H9B | 110.0 | C2—N4—C12 | 124.6 (2) |
H9A—C9—H9B | 108.3 | C7—N4—C12 | 116.7 (2) |
C9—C10—H10A | 109.5 | C11—N5—C12 | 109.3 (2) |
C9—C10—H10B | 109.5 | C11—N5—C13 | 114.3 (2) |
H10A—C10—H10B | 109.5 | C12—N5—C13 | 112.8 (2) |
C9—C10—H10C | 109.5 | C4—O4—C5 | 123.9 (6) |
H10A—C10—H10C | 109.5 | C4—O4—C5' | 109.8 (5) |
H10B—C10—H10C | 109.5 | C8—O6—C9 | 116.8 (3) |
N5—C11—N3 | 112.6 (2) | C20i—O7—C20 | 82.7 (16) |
| | | |
N1—C3—C4—O3 | 4.3 (4) | C7—C3—N2—C2 | −4.5 (3) |
N2—C3—C4—O3 | −124.3 (3) | O1—C1—N3—C7 | −175.6 (3) |
C7—C3—C4—O3 | 119.8 (3) | N1—C1—N3—C7 | 6.7 (3) |
N1—C3—C4—O4 | −177.6 (3) | O1—C1—N3—C11 | −30.3 (4) |
N2—C3—C4—O4 | 53.8 (3) | N1—C1—N3—C11 | 152.1 (2) |
C7—C3—C4—O4 | −62.1 (3) | N4—C7—N3—C1 | 106.8 (2) |
N1—C3—C7—N4 | −116.5 (2) | C8—C7—N3—C1 | −131.0 (2) |
N2—C3—C7—N4 | 2.6 (2) | C3—C7—N3—C1 | −4.4 (3) |
C4—C3—C7—N4 | 123.5 (2) | N4—C7—N3—C11 | −41.3 (3) |
N1—C3—C7—N3 | 0.5 (3) | C8—C7—N3—C11 | 81.0 (3) |
N2—C3—C7—N3 | 119.6 (2) | C3—C7—N3—C11 | −152.4 (2) |
C4—C3—C7—N3 | −119.6 (2) | N5—C11—N3—C1 | −93.4 (3) |
N1—C3—C7—C8 | 120.7 (2) | N5—C11—N3—C7 | 50.6 (3) |
N2—C3—C7—C8 | −120.2 (2) | O2—C2—N4—C7 | 177.3 (3) |
C4—C3—C7—C8 | 0.6 (3) | N2—C2—N4—C7 | −2.6 (3) |
N4—C7—C8—O5 | 5.2 (4) | O2—C2—N4—C12 | 27.9 (4) |
N3—C7—C8—O5 | −117.8 (3) | N2—C2—N4—C12 | −152.0 (2) |
C3—C7—C8—O5 | 124.7 (3) | N3—C7—N4—C2 | −111.1 (2) |
N4—C7—C8—O6 | −177.2 (2) | C8—C7—N4—C2 | 127.8 (2) |
N3—C7—C8—O6 | 59.7 (3) | C3—C7—N4—C2 | −0.2 (3) |
C3—C7—C8—O6 | −57.8 (3) | N3—C7—N4—C12 | 41.0 (3) |
N5—C13—C14—C15 | 94.6 (3) | C8—C7—N4—C12 | −80.2 (3) |
N5—C13—C14—C19 | −84.5 (3) | C3—C7—N4—C12 | 151.9 (2) |
C19—C14—C15—C16 | 2.6 (5) | N5—C12—N4—C2 | 98.4 (3) |
C13—C14—C15—C16 | −176.5 (3) | N5—C12—N4—C7 | −49.7 (3) |
C14—C15—C16—C17 | −2.3 (5) | N3—C11—N5—C12 | −55.9 (3) |
C15—C16—C17—C18 | −0.1 (5) | N3—C11—N5—C13 | 71.5 (3) |
C15—C16—C17—Br1 | 178.6 (2) | N4—C12—N5—C11 | 55.3 (3) |
C16—C17—C18—C19 | 2.1 (5) | N4—C12—N5—C13 | −73.1 (3) |
Br1—C17—C18—C19 | −176.7 (3) | C14—C13—N5—C11 | 154.6 (2) |
C17—C18—C19—C14 | −1.7 (5) | C14—C13—N5—C12 | −79.8 (3) |
C15—C14—C19—C18 | −0.6 (5) | O3—C4—O4—C5 | −15.6 (7) |
C13—C14—C19—C18 | 178.5 (3) | C3—C4—O4—C5 | 166.3 (5) |
O1—C1—N1—C3 | 175.9 (3) | O3—C4—O4—C5' | 16.1 (7) |
N3—C1—N1—C3 | −6.5 (3) | C3—C4—O4—C5' | −162.0 (6) |
N2—C3—N1—C1 | −105.8 (3) | C6—C5—O4—C4 | 116.7 (8) |
C4—C3—N1—C1 | 127.9 (3) | C6—C5—O4—C5' | 45.3 (12) |
C7—C3—N1—C1 | 3.6 (3) | C6'—C5'—O4—C4 | −144.8 (11) |
O2—C2—N2—C3 | −175.3 (3) | C6'—C5'—O4—C5 | −21.6 (12) |
N4—C2—N2—C3 | 4.6 (3) | O5—C8—O6—C9 | 2.6 (5) |
N1—C3—N2—C2 | 105.0 (3) | C7—C8—O6—C9 | −174.8 (3) |
C4—C3—N2—C2 | −129.0 (3) | C10—C9—O6—C8 | −151.3 (3) |
Symmetry code: (i) −x, y, −z+1/2. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C16—H16···O5ii | 0.93 | 2.54 | 3.222 (4) | 130 |
C9—H9A···O2iii | 0.97 | 2.56 | 3.318 (5) | 136 |
N2—H2···O2iv | 0.85 (4) | 2.08 (4) | 2.914 (3) | 168 (3) |
N1—H1···O1v | 0.85 (2) | 1.98 (1) | 2.828 (3) | 171 (3) |
Symmetry codes: (ii) −x+1/2, y+1/2, −z+1/2; (iii) −x+1/2, y−1/2, −z+1/2; (iv) −x+1/2, −y+3/2, −z; (v) −x, y, −z−1/2. |
Experimental details
Crystal data |
Chemical formula | C19H22BrN5O6·0.5CH4O |
Mr | 510.33 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 294 |
a, b, c (Å) | 24.06370 (14), 14.6142 (7), 15.1014 (7) |
β (°) | 123.918 (1) |
V (Å3) | 4407.0 (3) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 1.92 |
Crystal size (mm) | 0.30 × 0.20 × 0.20 |
|
Data collection |
Diffractometer | Bruker SMART 4K CCD area-detector diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 22693, 4339, 2828 |
Rint | 0.081 |
(sin θ/λ)max (Å−1) | 0.617 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.046, 0.136, 1.02 |
No. of reflections | 4339 |
No. of parameters | 322 |
No. of restraints | 31 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.50, −0.38 |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C16—H16···O5i | 0.93 | 2.54 | 3.222 (4) | 130 |
C9—H9A···O2ii | 0.97 | 2.56 | 3.318 (5) | 136 |
N2—H2···O2iii | 0.85 (4) | 2.08 (4) | 2.914 (3) | 168 (3) |
N1—H1···O1iv | 0.852 (18) | 1.98 (1) | 2.828 (3) | 171 (3) |
Symmetry codes: (i) −x+1/2, y+1/2, −z+1/2; (ii) −x+1/2, y−1/2, −z+1/2; (iii) −x+1/2, −y+3/2, −z; (iv) −x, y, −z−1/2. |
Glycoluril, a biurea compound known for about 130 years, has established an impressive career as building block for molecular and supramolecular chemistry during the recent two decades (Freeman et al., 1981; Rebek, 2005; Rowan et al., 1999; Wu et al., 2002). As a part of our ongoing investigation into glycoluril derivatives (Li et al., 2006), we report here the structure of the title compound (I) (Fig. 1).
The molecular structure of (I) is shown in Fig. 1. It has four fused ring two imidazole and one triazahexane rings. The crystal packing is stabilized by intermolecular non-classical N—H···O hydrogen bonds (Table 1). Interestingly, the two hydrogen-bond donating NH groups and hydrogen-bond accepting ureidyl C═O groups become fully hydrogen-bonded through the formation of R22(8) (Bernstein et al. 1995) motifs comprisring N—H···O hydrogen-bonds (Fig 2).