Methyl β-lactoside [methyl β-D-galactopyranosyl-(1→4)-β-D-glucopyranoside] monohydrate, C13H24O11·H2O, (I), was obtained via spontaneous transformation of methyl β-lactoside methanol solvate, (II), during air-drying. Cremer–Pople puckering parameters indicate that the β-D-Galp (β-D-galactopyranosyl) and β-D-Glcp (β-D-glucopyranosyl) rings in (I) adopt slightly distorted 4C1 chair conformations, with the former distorted towards a boat form (BC1,C4) and the latter towards a twist-boat form (O5SC2). Puckering parameters for (I) and (II) indicate that the conformation of the βGalp ring is slightly more affected than the βGlcp ring by the solvomorphism. Conformations of the terminal O-glycosidic linkages in (I) and (II) are virtually identical, whereas those of the internal O-glycosidic linkage show torsion-angle changes of 6° in both C—O bonds. The exocyclic hydroxymethyl group in the βGalp residue adopts a gt conformation (C4′ anti to O6′) in both (I) and (II), whereas that in the βGlcp residue adopts a gg (gauche–gauche) conformation (H5 anti to O6) in (II) and a gt (gauche–trans) conformation (C4 anti to O6) in (I). The latter conformational change is critical to the solvomorphism in that it allows water to participate in three hydrogen bonds in (I) as opposed to only two hydrogen bonds in (II), potentially producing a more energetically stable structure for (I) than for (II). Visual inspection of the crystalline lattice of (II) reveals channels in which methanol solvent resides and through which solvent might exchange during solvomorphism. These channels are less apparent in the crystalline lattice of (I).
Supporting information
CCDC reference: 2109224
Data collection: APEX3 (Bruker, 2018); cell refinement: SAINT (Bruker, 2018); data reduction: SAINT (Bruker, 2018); program(s) used to solve structure: SHELXT2014 (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2018 (Sheldrick, 2015b); molecular graphics: Mercury (Macrae et al., 2020); software used to prepare material for publication: SHELXL2018 (Sheldrick, 2015b).
Methyl
β-lactoside monohydrate
top
Crystal data top
C13H24O11·H2O | F(000) = 400 |
Mr = 374.34 | Dx = 1.517 Mg m−3 |
Monoclinic, P21 | Cu Kα radiation, λ = 1.54178 Å |
a = 4.6250 (1) Å | Cell parameters from 9961 reflections |
b = 24.0147 (7) Å | θ = 3.7–70.6° |
c = 7.6617 (2) Å | µ = 1.18 mm−1 |
β = 105.595 (1)° | T = 120 K |
V = 819.64 (4) Å3 | Tablet, colourless |
Z = 2 | 0.18 × 0.17 × 0.05 mm |
Data collection top
Bruker APEXII CCD diffractometer | 3056 independent reflections |
Radiation source: Ius micro-focus | 3031 reflections with I > 2σ(I) |
Detector resolution: 7.41 pixels mm-1 | Rint = 0.025 |
φ and ω scans | θmax = 70.6°, θmin = 3.7° |
Absorption correction: numerical (SADABS; Krause et al., 2015) | h = −5→5 |
Tmin = 0.581, Tmax = 0.738 | k = −29→29 |
14059 measured reflections | l = −9→9 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.026 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.071 | w = 1/[σ2(Fo2) + (0.045P)2 + 0.1553P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max < 0.001 |
3056 reflections | Δρmax = 0.31 e Å−3 |
263 parameters | Δρmin = −0.16 e Å−3 |
2 restraints | Absolute structure: Flack x determined using 1459 quotients [(I+)-(I-)]/[(I+)+(I-)]
(Parsons et al., 2013) |
Primary atom site location: dual | Absolute structure parameter: 0.05 (4) |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.6945 (4) | 0.69849 (7) | 1.0028 (2) | 0.0275 (4) | |
O2 | 0.8779 (4) | 0.59193 (7) | 1.1369 (2) | 0.0273 (3) | |
H2O | 0.965 (7) | 0.5620 (14) | 1.139 (4) | 0.028 (7)* | |
O3 | 0.5847 (4) | 0.50682 (7) | 0.8846 (2) | 0.0267 (3) | |
H3O | 0.621 (7) | 0.4792 (15) | 0.838 (4) | 0.030 (8)* | |
O5 | 0.5942 (4) | 0.66710 (6) | 0.7138 (2) | 0.0220 (3) | |
O6 | 0.6390 (4) | 0.69673 (7) | 0.3572 (2) | 0.0326 (4) | |
H6O | 0.669 (8) | 0.6929 (14) | 0.249 (5) | 0.042 (9)* | |
O1' | 0.6438 (3) | 0.53275 (6) | 0.5092 (2) | 0.0213 (3) | |
O2' | 0.2953 (4) | 0.50780 (7) | 0.1565 (2) | 0.0242 (3) | |
H2O' | 0.350 (10) | 0.5057 (19) | 0.072 (6) | 0.058 (12)* | |
O3' | 0.2417 (4) | 0.39315 (7) | 0.0577 (2) | 0.0237 (3) | |
H3O' | 0.382 (10) | 0.3860 (17) | 0.042 (5) | 0.046 (11)* | |
O4' | 0.7291 (3) | 0.35632 (7) | 0.3451 (2) | 0.0216 (3) | |
H4O' | 0.764 (6) | 0.3249 (13) | 0.359 (3) | 0.013 (6)* | |
O5' | 0.6327 (3) | 0.44224 (6) | 0.5922 (2) | 0.0205 (3) | |
O6' | 0.6741 (4) | 0.37161 (8) | 0.8886 (2) | 0.0309 (4) | |
H6O' | 0.873 (8) | 0.3796 (15) | 0.944 (5) | 0.040 (8)* | |
C1 | 0.7704 (5) | 0.65762 (9) | 0.8945 (3) | 0.0224 (4) | |
H1 | 0.989103 | 0.659580 | 0.901284 | 0.027* | |
C2 | 0.6930 (5) | 0.60125 (9) | 0.9609 (3) | 0.0212 (4) | |
H2 | 0.480366 | 0.602811 | 0.967917 | 0.025* | |
C3 | 0.7160 (5) | 0.55488 (9) | 0.8288 (3) | 0.0207 (4) | |
H3 | 0.932836 | 0.547190 | 0.840480 | 0.025* | |
C4 | 0.5624 (5) | 0.57059 (9) | 0.6322 (3) | 0.0193 (4) | |
H4 | 0.339676 | 0.570235 | 0.612076 | 0.023* | |
C5 | 0.6628 (5) | 0.62815 (9) | 0.5886 (3) | 0.0207 (4) | |
H5 | 0.884366 | 0.627842 | 0.603719 | 0.025* | |
C6 | 0.5041 (5) | 0.64700 (9) | 0.3986 (3) | 0.0241 (4) | |
H6A | 0.517498 | 0.617525 | 0.310737 | 0.029* | |
H6B | 0.289288 | 0.653766 | 0.389090 | 0.029* | |
C7 | 0.8300 (9) | 0.75158 (11) | 0.9912 (4) | 0.0445 (7) | |
HA | 0.804741 | 0.761126 | 0.863563 | 0.067* | |
HC | 1.044419 | 0.749864 | 1.053992 | 0.067* | |
HB | 0.733355 | 0.780040 | 1.047915 | 0.067* | |
C1' | 0.4761 (5) | 0.48398 (9) | 0.4699 (3) | 0.0190 (4) | |
H1' | 0.270949 | 0.489827 | 0.486252 | 0.023* | |
C2' | 0.4547 (5) | 0.46614 (9) | 0.2760 (3) | 0.0191 (4) | |
H2' | 0.660667 | 0.461738 | 0.259442 | 0.023* | |
C3' | 0.2871 (4) | 0.41071 (9) | 0.2399 (3) | 0.0192 (4) | |
H3' | 0.084205 | 0.416873 | 0.259437 | 0.023* | |
C4' | 0.4446 (5) | 0.36713 (8) | 0.3764 (3) | 0.0194 (4) | |
H4' | 0.322879 | 0.332145 | 0.358122 | 0.023* | |
C5' | 0.4756 (5) | 0.38959 (9) | 0.5674 (3) | 0.0194 (4) | |
H5' | 0.271275 | 0.394969 | 0.585597 | 0.023* | |
C6' | 0.6551 (5) | 0.35079 (10) | 0.7124 (3) | 0.0234 (4) | |
H6B' | 0.558661 | 0.313657 | 0.698274 | 0.028* | |
H6A' | 0.859855 | 0.346437 | 0.697257 | 0.028* | |
O1W | 0.8826 (4) | 0.24832 (8) | 0.3889 (3) | 0.0390 (4) | |
H1WA | 0.738 (9) | 0.2209 (19) | 0.366 (7) | 0.078 (14)* | |
H1WB | 1.050 (8) | 0.2317 (16) | 0.471 (5) | 0.054 (11)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0444 (10) | 0.0198 (8) | 0.0198 (8) | −0.0016 (7) | 0.0108 (7) | −0.0025 (6) |
O2 | 0.0329 (8) | 0.0269 (8) | 0.0197 (7) | 0.0076 (7) | 0.0026 (6) | −0.0022 (6) |
O3 | 0.0421 (9) | 0.0189 (7) | 0.0216 (7) | −0.0016 (7) | 0.0130 (7) | −0.0021 (6) |
O5 | 0.0288 (8) | 0.0198 (7) | 0.0172 (7) | 0.0032 (6) | 0.0057 (6) | −0.0007 (6) |
O6 | 0.0498 (11) | 0.0259 (9) | 0.0227 (8) | −0.0039 (8) | 0.0107 (8) | 0.0009 (7) |
O1' | 0.0233 (7) | 0.0201 (7) | 0.0216 (7) | −0.0016 (6) | 0.0084 (6) | −0.0038 (6) |
O2' | 0.0267 (8) | 0.0250 (7) | 0.0202 (7) | 0.0069 (6) | 0.0053 (6) | 0.0029 (6) |
O3' | 0.0204 (8) | 0.0322 (8) | 0.0180 (7) | −0.0005 (6) | 0.0044 (6) | −0.0056 (6) |
O4' | 0.0205 (7) | 0.0195 (8) | 0.0272 (8) | 0.0016 (6) | 0.0104 (6) | −0.0009 (6) |
O5' | 0.0218 (7) | 0.0196 (7) | 0.0184 (7) | −0.0022 (5) | 0.0024 (6) | −0.0008 (5) |
O6' | 0.0220 (8) | 0.0529 (11) | 0.0177 (7) | −0.0008 (7) | 0.0051 (6) | −0.0018 (7) |
C1 | 0.0252 (10) | 0.0226 (10) | 0.0187 (10) | −0.0012 (8) | 0.0046 (8) | −0.0023 (8) |
C2 | 0.0216 (10) | 0.0229 (11) | 0.0186 (10) | 0.0007 (8) | 0.0049 (8) | −0.0013 (8) |
C3 | 0.0227 (10) | 0.0195 (10) | 0.0198 (10) | 0.0008 (7) | 0.0055 (8) | 0.0001 (7) |
C4 | 0.0213 (10) | 0.0200 (9) | 0.0171 (10) | 0.0007 (8) | 0.0059 (8) | −0.0023 (8) |
C5 | 0.0233 (10) | 0.0202 (10) | 0.0190 (10) | 0.0011 (8) | 0.0062 (8) | −0.0029 (8) |
C6 | 0.0295 (11) | 0.0234 (11) | 0.0190 (10) | 0.0004 (8) | 0.0059 (8) | −0.0011 (8) |
C7 | 0.083 (2) | 0.0225 (12) | 0.0317 (13) | −0.0111 (13) | 0.0212 (14) | −0.0059 (10) |
C1' | 0.0189 (9) | 0.0184 (9) | 0.0197 (10) | −0.0005 (8) | 0.0051 (8) | −0.0017 (7) |
C2' | 0.0174 (9) | 0.0211 (9) | 0.0183 (9) | 0.0012 (8) | 0.0037 (7) | 0.0005 (8) |
C3' | 0.0152 (9) | 0.0245 (10) | 0.0182 (10) | −0.0014 (7) | 0.0050 (8) | −0.0032 (8) |
C4' | 0.0169 (9) | 0.0204 (10) | 0.0222 (10) | −0.0023 (7) | 0.0074 (8) | −0.0024 (8) |
C5' | 0.0196 (9) | 0.0195 (9) | 0.0200 (9) | −0.0027 (7) | 0.0068 (8) | −0.0013 (8) |
C6' | 0.0246 (10) | 0.0263 (10) | 0.0195 (9) | −0.0019 (8) | 0.0062 (8) | 0.0012 (8) |
O1W | 0.0337 (9) | 0.0249 (8) | 0.0568 (12) | 0.0012 (7) | 0.0094 (9) | 0.0071 (8) |
Geometric parameters (Å, º) top
O1—C1 | 1.390 (3) | C3—C4 | 1.530 (3) |
O1—C7 | 1.434 (3) | C3—H3 | 1.0000 |
O2—C2 | 1.407 (3) | C4—C5 | 1.524 (3) |
O2—H2O | 0.82 (3) | C4—H4 | 1.0000 |
O3—C3 | 1.422 (3) | C5—C6 | 1.512 (3) |
O3—H3O | 0.79 (4) | C5—H5 | 1.0000 |
O5—C1 | 1.423 (3) | C6—H6A | 0.9900 |
O5—C5 | 1.435 (2) | C6—H6B | 0.9900 |
O6—C6 | 1.422 (3) | C7—HA | 0.9800 |
O6—H6O | 0.88 (4) | C7—HC | 0.9800 |
O1'—C1' | 1.392 (3) | C7—HB | 0.9800 |
O1'—C4 | 1.430 (2) | C1'—C2' | 1.523 (3) |
O2'—C2' | 1.421 (3) | C1'—H1' | 1.0000 |
O2'—H2O' | 0.76 (5) | C2'—C3' | 1.528 (3) |
O3'—C3' | 1.419 (3) | C2'—H2' | 1.0000 |
O3'—H3O' | 0.71 (4) | C3'—C4' | 1.520 (3) |
O4'—C4' | 1.424 (3) | C3'—H3' | 1.0000 |
O4'—H4O' | 0.77 (3) | C4'—C5' | 1.530 (3) |
O5'—C1' | 1.429 (3) | C4'—H4' | 1.0000 |
O5'—C5' | 1.445 (3) | C5'—C6' | 1.515 (3) |
O6'—C6' | 1.420 (3) | C5'—H5' | 1.0000 |
O6'—H6O' | 0.93 (4) | C6'—H6B' | 0.9900 |
C1—C2 | 1.522 (3) | C6'—H6A' | 0.9900 |
C1—H1 | 1.0000 | O1W—H1WA | 0.92 (4) |
C2—C3 | 1.527 (3) | O1W—H1WB | 0.95 (3) |
C2—H2 | 1.0000 | | |
| | | |
C1—O1—C7 | 113.95 (19) | C5—C6—H6B | 109.7 |
C2—O2—H2O | 109 (2) | H6A—C6—H6B | 108.2 |
C3—O3—H3O | 113 (2) | O1—C7—HA | 109.5 |
C1—O5—C5 | 111.99 (16) | O1—C7—HC | 109.5 |
C6—O6—H6O | 108 (2) | HA—C7—HC | 109.5 |
C1'—O1'—C4 | 116.57 (16) | O1—C7—HB | 109.5 |
C2'—O2'—H2O' | 106 (3) | HA—C7—HB | 109.5 |
C3'—O3'—H3O' | 110 (3) | HC—C7—HB | 109.5 |
C4'—O4'—H4O' | 108.7 (19) | O1'—C1'—O5' | 107.07 (16) |
C1'—O5'—C5' | 112.29 (15) | O1'—C1'—C2' | 109.53 (16) |
C6'—O6'—H6O' | 108 (2) | O5'—C1'—C2' | 109.31 (16) |
O1—C1—O5 | 107.31 (17) | O1'—C1'—H1' | 110.3 |
O1—C1—C2 | 107.97 (17) | O5'—C1'—H1' | 110.3 |
O5—C1—C2 | 110.05 (17) | C2'—C1'—H1' | 110.3 |
O1—C1—H1 | 110.5 | O2'—C2'—C1' | 108.48 (16) |
O5—C1—H1 | 110.5 | O2'—C2'—C3' | 110.28 (16) |
C2—C1—H1 | 110.5 | C1'—C2'—C3' | 108.58 (16) |
O2—C2—C1 | 108.96 (18) | O2'—C2'—H2' | 109.8 |
O2—C2—C3 | 112.73 (18) | C1'—C2'—H2' | 109.8 |
C1—C2—C3 | 111.25 (18) | C3'—C2'—H2' | 109.8 |
O2—C2—H2 | 107.9 | O3'—C3'—C4' | 112.89 (18) |
C1—C2—H2 | 107.9 | O3'—C3'—C2' | 111.77 (17) |
C3—C2—H2 | 107.9 | C4'—C3'—C2' | 110.44 (16) |
O3—C3—C2 | 106.35 (17) | O3'—C3'—H3' | 107.1 |
O3—C3—C4 | 111.91 (18) | C4'—C3'—H3' | 107.1 |
C2—C3—C4 | 112.09 (17) | C2'—C3'—H3' | 107.1 |
O3—C3—H3 | 108.8 | O4'—C4'—C3' | 107.68 (17) |
C2—C3—H3 | 108.8 | O4'—C4'—C5' | 111.86 (17) |
C4—C3—H3 | 108.8 | C3'—C4'—C5' | 108.64 (17) |
O1'—C4—C5 | 106.40 (16) | O4'—C4'—H4' | 109.5 |
O1'—C4—C3 | 110.95 (17) | C3'—C4'—H4' | 109.5 |
C5—C4—C3 | 110.59 (17) | C5'—C4'—H4' | 109.5 |
O1'—C4—H4 | 109.6 | O5'—C5'—C6' | 106.55 (16) |
C5—C4—H4 | 109.6 | O5'—C5'—C4' | 110.39 (16) |
C3—C4—H4 | 109.6 | C6'—C5'—C4' | 112.11 (17) |
O5—C5—C6 | 108.13 (17) | O5'—C5'—H5' | 109.2 |
O5—C5—C4 | 108.03 (16) | C6'—C5'—H5' | 109.2 |
C6—C5—C4 | 112.65 (17) | C4'—C5'—H5' | 109.2 |
O5—C5—H5 | 109.3 | O6'—C6'—C5' | 111.23 (18) |
C6—C5—H5 | 109.3 | O6'—C6'—H6B' | 109.4 |
C4—C5—H5 | 109.3 | C5'—C6'—H6B' | 109.4 |
O6—C6—C5 | 109.72 (18) | O6'—C6'—H6A' | 109.4 |
O6—C6—H6A | 109.7 | C5'—C6'—H6A' | 109.4 |
C5—C6—H6A | 109.7 | H6B'—C6'—H6A' | 108.0 |
O6—C6—H6B | 109.7 | H1WA—O1W—H1WB | 104 (4) |
| | | |
C7—O1—C1—O5 | −78.2 (2) | C4—C5—C6—O6 | −171.25 (17) |
C7—O1—C1—C2 | 163.2 (2) | C4—O1'—C1'—O5' | −93.96 (19) |
C5—O5—C1—O1 | 177.92 (16) | C4—O1'—C1'—C2' | 147.62 (17) |
C5—O5—C1—C2 | −64.8 (2) | C5'—O5'—C1'—O1' | 178.56 (15) |
O1—C1—C2—O2 | −65.4 (2) | C5'—O5'—C1'—C2' | −62.9 (2) |
O5—C1—C2—O2 | 177.76 (18) | O1'—C1'—C2'—O2' | −63.7 (2) |
O1—C1—C2—C3 | 169.71 (17) | O5'—C1'—C2'—O2' | 179.31 (15) |
O5—C1—C2—C3 | 52.9 (2) | O1'—C1'—C2'—C3' | 176.47 (16) |
O2—C2—C3—O3 | 68.3 (2) | O5'—C1'—C2'—C3' | 59.5 (2) |
C1—C2—C3—O3 | −168.95 (17) | O2'—C2'—C3'—O3' | 57.6 (2) |
O2—C2—C3—C4 | −169.09 (18) | C1'—C2'—C3'—O3' | 176.29 (16) |
C1—C2—C3—C4 | −46.3 (2) | O2'—C2'—C3'—C4' | −175.87 (16) |
C1'—O1'—C4—C5 | −154.47 (17) | C1'—C2'—C3'—C4' | −57.1 (2) |
C1'—O1'—C4—C3 | 85.2 (2) | O3'—C3'—C4'—O4' | 60.0 (2) |
O3—C3—C4—O1' | −73.8 (2) | C2'—C3'—C4'—O4' | −66.0 (2) |
C2—C3—C4—O1' | 166.84 (17) | O3'—C3'—C4'—C5' | −178.70 (16) |
O3—C3—C4—C5 | 168.41 (16) | C2'—C3'—C4'—C5' | 55.4 (2) |
C2—C3—C4—C5 | 49.0 (2) | C1'—O5'—C5'—C6' | −176.46 (16) |
C1—O5—C5—C6 | −170.91 (17) | C1'—O5'—C5'—C4' | 61.6 (2) |
C1—O5—C5—C4 | 66.9 (2) | O4'—C4'—C5'—O5' | 62.4 (2) |
O1'—C4—C5—O5 | −178.01 (15) | C3'—C4'—C5'—O5' | −56.3 (2) |
C3—C4—C5—O5 | −57.4 (2) | O4'—C4'—C5'—C6' | −56.2 (2) |
O1'—C4—C5—C6 | 62.6 (2) | C3'—C4'—C5'—C6' | −174.95 (17) |
C3—C4—C5—C6 | −176.81 (18) | O5'—C5'—C6'—O6' | 60.8 (2) |
O5—C5—C6—O6 | 69.4 (2) | C4'—C5'—C6'—O6' | −178.35 (17) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O2′—H2O′···O3i | 0.76 (5) | 2.02 (5) | 2.763 (2) | 167 (5) |
O2—H2O···O2′ii | 0.82 (3) | 1.98 (3) | 2.770 (2) | 160 (3) |
O3′—H3O′···O6′i | 0.71 (4) | 2.04 (4) | 2.709 (2) | 156 (4) |
O3—H3O···O5′ | 0.79 (4) | 2.10 (4) | 2.782 (2) | 145 (3) |
O3—H3O···O6′ | 0.79 (4) | 2.61 (4) | 3.272 (3) | 142 (3) |
O4′—H4O′···O1W | 0.77 (3) | 1.92 (3) | 2.686 (3) | 175 (3) |
O6′—H6O′···O3′ii | 0.93 (4) | 1.72 (4) | 2.647 (2) | 177 (3) |
O6—H6O···O1i | 0.88 (4) | 1.92 (4) | 2.795 (2) | 169 (3) |
O1W—H1WA···O5iii | 0.92 (4) | 1.97 (4) | 2.890 (2) | 172 (5) |
O1W—H1WB···O6iv | 0.95 (3) | 1.87 (3) | 2.811 (3) | 176 (4) |
Symmetry codes: (i) x, y, z−1; (ii) x+1, y, z+1; (iii) −x+1, y−1/2, −z+1; (iv) −x+2, y−1/2, −z+1. |
Cremer–Pople structural parameters for the βGlcp and βGalp
rings in (I) and (II) topCompound/Residue | φ (°) | θ (°) | Q (Å) | q2 | q3 |
(I)/βGalp | 70.168 | 1.912 | 0.594 | 0.020 | 0.594 |
(I)/βGlcp | 340.062 | 9.947 | 0.569 | 0.098 | 0.560 |
(II)/βGalp | 28.171 | 4.675 | 0.595 | 0.049 | 0.593 |
(II)/βGlcp | 341.473 | 11.993 | 0.558 | 0.116 | 0.546 |
Select structural parameters (Å, °) in (I) and (II) top | | (I) | (II) |
| C—C bond lengthsa | | |
1 | C1'—C2' | 1.524 (3) | 1.527 (3) |
2 | C2'—C3' | 1.528 (3) | 1.531 (3) |
3 | C3'—C4' | 1.520 (3) | 1.521 (3) |
4 | C4'—-C5' | 1.530 (3) | 1.521 (3) |
5 | C5'–C6' | 1.515 (3) | 1.511 (3) |
6 | C1—C2 | 1.522 (3) | 1.516 (4) |
7 | C2—C3 | 1.528 (3) | 1.519 (3) |
8 | C3—C4 | 1.530 (3) | 1.531 (3) |
9 | C4—C5 | 1.524 (3) | 1.530 (3) |
10 | C5—C6 | 1.512 (3) | 1.508 (3) |
| | | |
| C—O bond lengths | | |
1 | C1'—O1' | 1.392 (3) | 1.387 (3) |
2 | C1'—O5' | 1.429 (2) | 1.425 (3) |
3 | C2'—O2' | 1.421 (3) | 1.414 (3) |
4 | C3'—O3' | 1.419 (3) | 1.422 (3) |
5 | C4'—O4' | 1.423 (3) | 1.423 (3) |
6 | C5'—O5' | 1.445 (3) | 1.432 (3) |
7 | C6'—O6' | 1.420 (3) | 1.426 (3) |
8 | C1—O1 | 1.390 (3) | 1.384 (3) |
9 | C1—O5 | 1.423 (2) | 1.413 (3) |
10 | C2—O2 | 1.407 (2) | 1.418 (3) |
11 | C3—O3 | 1.422 (3) | 1.421 (3) |
12 | O1'—C4 | 1.431 (3) | 1.437 (3) |
13 | C5—O5 | 1.435 (3) | 1.428 (3) |
14 | C6—O6 | 1.422 (3) | 1.424 (3) |
| | | |
| Internuclear distances | | |
| O3d···O5' | 2.782 (2) | 2.764 (2) |
| O3d···O6'ii | 3.272 (3) | 2.935 (3) |
| H2O···O5ai | 2.890 (2) | – |
| H2O···O6aiv | 2.811 (3) | – |
| O4'd···H2O | 2.686 (3) | – |
| CH3OH···O6a | – | 2.727 (3) |
| O4'd···CH3OH | – | 2.686 (11) |
| | | |
| Bond angles | | |
| C5—O5—C1 | 112.0 (2) | 112.0 (2) |
| C5'—O5'—C1' | 112.3 (2) | 112.3 (2) |
| C1'—O1'—C4 | 116.5 (2) | 116.2 (2) |
| C1—O1—CH3 | 114.0 (2) | 113.7 (2) |
| | | |
| Torsion angles | | |
| C1—C2—C3—C4 | -46.4 (2) | -44.2 (3) |
| C1—O5—C5—C4 | 66.9 (2) | 67.6 (2) |
| C1'—C2'—C3'—C4' | -7.1 (2) | -54.8 (2) |
| C1'—O5'—C5'—C4' | 61.6 (2) | 65.0 (2) |
| O5—C1—O1—CH3 (φ) | -78.2 (2) | -77.3 (3) |
| C2—C1—O1—CH3 (φ) | 163.2 (2) | 164.2 (2) |
| H1—C1—O1—CH3 (φ) | 42.2 | 44.1 (4) |
| O5'—C1'—O1'—C4 (φ') | -94.0 (2) | -88.4 (2) |
| C2'—C1'—O1'—C4 (φ') | 147.6 (2) | 153.8 (2) |
| H1'—C1'—O1'—C4 (φ') | 26.1 | 31.9 (3) |
| C1'—O1'—C4—C3 (ψ') | 85.2 (2) | 78.4 (2) |
| C1'—O1'—C4—C5 (ψ') | -154.5 (2) | -161.3 (2) |
| C1'—O1'—C4—H4 (ψ') | -36.0 | -43.7 (3) |
| O5—C5—C6—O6 (ω) | 69.4 (2) [gt] | -54.6 (2) [gg] |
| C4—C5—C6—O6 (ω) | -171.3 (2) [gt] | 66.4 (3) [gg] |
| O5'—C5'—C6'—O6' (ω) | 60.8 (2) [gt] | 57.3 (2) [gt] |
| C4'—C5'—C6'—O6' (ω') | -178.4 (2) [gt] | 177.8 (2) [gt] |
| C1—C2—O2—H | -125.6 | -123.4 |
| C2—C3—O3—H | -166.6 | -159.0 |
| C5—C6—O6—H | 133.0 | -123.1 |
| C1'—C2'—O2'—H | 153.5 | 143.4 |
| C2'–C3'–O3'—H | 68.1 | 44.9 |
| C3'—C4'—O4'—H | -142.2 | -112.3 |
| C5'—C6'—O6'—H | -115.3 | -132.5 |
Notes: (a) C—C and C—O bond length numbers shown in the left-most
column were used to plot the data in Fig. S1 (in the supporting information).
Subscript `a' denotes an acceptor site and subscript `d' the donor atom in the
hydrogen bond. [Symmetry codes:
(i) -x+1, y-1/2, -z+1;
(ii) x+1, y, z+1;
(iv) x, y, z+1.] |
Hydrogen-bond geometry (Å, °) of (I) and (II) topCompound | D—H···A | D—H | H···A (Å) | D···A | D—H···A |
(I) | Sugar–solvent interactions | | | | |
| O1W—H1WA···O5i | 0.92 (4) | 1.97 (4) | 2.890 (3) | 172 (5) |
| O1W—H1WB···O6iv | 0.95 (3) | 1.87 (4) | 2.811 (3) | 176 (4) |
| O4'—H4O'···O1W | 0.77 (3) | 1.92 (3) | 2.686 (3) | 175 (3) |
| Sugar–sugar interactions | | | | |
| O2—H2O···O2'iii | 0.83 (3) | 1.98 (3) | 2.771 (2) | 160 (3) |
| O3—H3O···O5' | 0.79 (4) | 2.10 (4) | 2.782 (2) | 145 (3) |
| O6—H6O···O1ii | 0.88 (4) | 1.92 (4) | 2.795 (2) | 169 (3) |
| O2'—H2O'···O3ii | 0.76 (5) | 2.02 (5) | 2.763 (2) | 167 (5) |
| O3'—H3O'···O6'ii | 0.71 (4) | 2.04 (4) | 2.709 (2) | 156 (4) |
| O6'—H6O'···O3'iii | 0.93 (4) | 1.72 (4) | 2.647 (2) | 177 (3) |
| | | | | |
(II) | Sugar–solvent interactions | | | | |
| O4'—H4'O···O11i | 0.82 (1) | 1.87 | 2.686 (3) | 171 |
| O11—H11O···O6 | 0.82 (1) | 1.93 | 2.727 (3) | 164 |
| Sugar–sugar interactions | | | | |
| O2—H2O···O2'iii | 0.82 (2) | 1.96 | 2.757 (3) | 163 |
| O3—H3O···O5' | 0.82 (2) | 2.08 | 2.764 (2) | 141 |
| O6—H6O···O2ii | 0.82 (2) | 1.94 | 2.748 (2) | 169 |
| O2'—H2'O···O3iv | 0.82 (2) | 1.96 | 2.775 (3) | 175 |
| O3'—H3'O···O6'iv | 0.82 (2) | 1.96 | 2.740 (2) | 160 |
| O6'—H6'O···O3'iii | 0.820 (7) | 1.84 | 2.662 (2) | 175 |
Weak hydrogen bond O3—H3O···O6' was not shown as
D···A > 3.0 Å.
Symmetry codes for (I): (i) -x+1, y-1/2, -z+1;
(ii) x, y, z-1;
(iii) x+1, y, z+1;
(iv) -x+2, y-1/2, -z+1.
Symmetry codes for (II): (i) -x+2, y-1/2, -z+2;
(ii) x+1, y, z+1;
(iii) x-1, y, z-1;
(iv) x, y, z+1. |