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Cocrystals are mol­ecular solids composed of at least two types of neutral chemical species held together by noncovalent forces. Crystallization of thymine [systematic name: 5-methyl­pyrimidine-2,4(1H,3H)-dione] with four phenolic coformers resulted in cocrystal formation, viz. catechol (benzene-1,2-diol) giving thymine-catechol (1/1), C5H6N2O2·C6H6O2, (I), resorcinol (benzene-1,3-diol) giving thymine-resorcinol (2/1), 2C5H6N2O2·C6H6O2, (II), hydro­quinone (benzene-1,4-diol) giving thymine-hydro­quinone (2/1), 2C5H6N2O2·C6H6O2, (III), and pyrogallol (benzene-1,2,3-triol) giving thymine-pyrogallol (1/2), C5H6N2O2·2C6H6O3, (IV). The resorcinol mol­ecule in (II) occupies a twofold axis, while the hydro­quinone mol­ecule in (III) is situated on a centre of inversion. Thymine-thymine base pairing is common across all four structures, albeit with different patterns. In (I)-(III), the base pair is propagated into an infinite one-dimensional ribbon, whereas it exists as a discrete dimeric unit in (IV). In (I)-(III), the two donor N atoms and one carbonyl acceptor O atom of thymine are involved in thymine-thymine base pairing and the remaining carbonyl O atom is hydrogen bonded to the coformer. In contrast, in (IV), just one donor N atom and one acceptor O atom are involved in base pairing, and the remaining donor N atom and acceptor O atom of thymine form hydrogen bonds to the coformer mol­ecules. Thus, the utilization of the donor and acceptor atoms of thymine in the hydrogen bonding is influenced by the coformers.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S2053229615011614/eg3185sup1.cif
Contains datablocks I, II, III, IV, global

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229615011614/eg3185Isup2.hkl
Contains datablock I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229615011614/eg3185IIsup3.hkl
Contains datablock II

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229615011614/eg3185IIIsup4.hkl
Contains datablock III

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229615011614/eg3185IVsup5.hkl
Contains datablock IV

cml

Chemical Markup Language (CML) file https://doi.org/10.1107/S2053229615011614/eg3185Isup6.cml
Supplementary material

cml

Chemical Markup Language (CML) file https://doi.org/10.1107/S2053229615011614/eg3185IIsup7.cml
Supplementary material

cml

Chemical Markup Language (CML) file https://doi.org/10.1107/S2053229615011614/eg3185IIIsup8.cml
Supplementary material

cml

Chemical Markup Language (CML) file https://doi.org/10.1107/S2053229615011614/eg3185IVsup9.cml
Supplementary material

CCDC references: 1406963; 1406962; 1406961; 1406960

Computing details top

For all compounds, data collection: SMART (Bruker, 2001); cell refinement: SAINT (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2015); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: DIAMOND (Brandenburg & Putz, 2005); software used to prepare material for publication: SHELXL2014 (Sheldrick, 2015).

(I) 5-Methylpyrimidine-2,4(1H,3H)-dione–benzene-1,2-diol (1/1) top
Crystal data top
C5H6N2O2·C6H6O2Dx = 1.368 Mg m3
Mr = 236.23Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, PbcaCell parameters from 7224 reflections
a = 6.9132 (8) Åθ = 3.2–27.6°
b = 8.9917 (10) ŵ = 0.11 mm1
c = 36.898 (4) ÅT = 294 K
V = 2293.6 (4) Å3Block, colourless
Z = 80.18 × 0.15 × 0.08 mm
F(000) = 992
Data collection top
Bruker SMART APEX CCD area-detector
diffractometer
2311 reflections with I > 2σ(I)
ω scansRint = 0.030
Absorption correction: multi-scan
(SADABS; Bruker, 2001)
θmax = 28.2°, θmin = 2.2°
Tmin = 0.93, Tmax = 0.98h = 88
24525 measured reflectionsk = 1111
2768 independent reflectionsl = 4748
Refinement top
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.051H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.134 w = 1/[σ2(Fo2) + (0.0581P)2 + 0.5148P]
where P = (Fo2 + 2Fc2)/3
S = 1.17(Δ/σ)max < 0.001
2768 reflectionsΔρmax = 0.23 e Å3
171 parametersΔρmin = 0.17 e Å3
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C20.06793 (18)0.17018 (16)0.47840 (4)0.0351 (3)
C40.11589 (19)0.00171 (16)0.43924 (4)0.0367 (3)
C50.06574 (19)0.05643 (17)0.42554 (4)0.0385 (3)
C60.2295 (2)0.00084 (17)0.43921 (4)0.0401 (3)
H60.34680.03830.43090.048*
C90.0594 (2)0.1761 (2)0.39744 (5)0.0512 (4)
H9A0.18830.21040.39260.077*
H9B0.00350.13730.37560.077*
H9C0.01780.25740.40610.077*
N10.23193 (17)0.10980 (14)0.46510 (3)0.0399 (3)
H1N0.339 (3)0.145 (2)0.4743 (5)0.051 (5)*
N30.09944 (16)0.11398 (14)0.46474 (3)0.0381 (3)
H2N0.206 (3)0.154 (2)0.4732 (5)0.048 (5)*
O70.06794 (13)0.26938 (13)0.50170 (3)0.0444 (3)
O80.27799 (14)0.04084 (14)0.43056 (3)0.0483 (3)
C100.4722 (3)0.0185 (2)0.33773 (5)0.0526 (4)
C110.3432 (3)0.09660 (19)0.33232 (5)0.0517 (4)
C120.3707 (3)0.1932 (2)0.30377 (5)0.0667 (5)
H120.28610.27240.30030.080*
C130.5229 (4)0.1726 (3)0.28038 (6)0.0819 (7)
H130.54130.23790.26110.098*
C140.6477 (4)0.0561 (3)0.28534 (7)0.0901 (8)
H140.74900.04130.26920.108*
C150.6239 (3)0.0396 (3)0.31421 (6)0.0757 (6)
H150.70990.11780.31770.091*
O160.44933 (18)0.11560 (15)0.36626 (4)0.0579 (3)
H1O0.370 (3)0.079 (3)0.3818 (7)0.082 (7)*
O170.1939 (2)0.10467 (17)0.35633 (4)0.0641 (4)
H2O0.139 (4)0.189 (3)0.3564 (7)0.084 (8)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C20.0254 (6)0.0405 (7)0.0396 (7)0.0015 (5)0.0004 (5)0.0012 (6)
C40.0288 (6)0.0439 (7)0.0374 (7)0.0023 (5)0.0026 (5)0.0004 (6)
C50.0324 (7)0.0399 (7)0.0431 (7)0.0007 (6)0.0008 (5)0.0022 (6)
C60.0284 (7)0.0436 (8)0.0483 (8)0.0025 (6)0.0051 (6)0.0043 (6)
C90.0427 (8)0.0524 (9)0.0585 (10)0.0051 (7)0.0029 (7)0.0156 (8)
N10.0226 (6)0.0473 (7)0.0498 (7)0.0022 (5)0.0003 (5)0.0070 (5)
N30.0221 (6)0.0469 (7)0.0452 (7)0.0009 (5)0.0007 (5)0.0069 (5)
O70.0258 (5)0.0555 (7)0.0518 (6)0.0013 (4)0.0003 (4)0.0158 (5)
O80.0299 (5)0.0628 (7)0.0521 (6)0.0069 (5)0.0040 (4)0.0120 (5)
C100.0514 (9)0.0550 (10)0.0515 (9)0.0074 (8)0.0032 (7)0.0092 (8)
C110.0541 (9)0.0507 (9)0.0502 (9)0.0108 (8)0.0025 (7)0.0100 (7)
C120.0778 (13)0.0634 (11)0.0591 (11)0.0117 (10)0.0080 (10)0.0021 (9)
C130.1006 (18)0.0892 (16)0.0558 (11)0.0267 (15)0.0066 (12)0.0045 (11)
C140.0838 (16)0.116 (2)0.0706 (14)0.0163 (16)0.0276 (12)0.0046 (14)
C150.0668 (12)0.0881 (15)0.0720 (13)0.0037 (12)0.0187 (10)0.0074 (12)
O160.0549 (8)0.0580 (7)0.0608 (7)0.0082 (6)0.0127 (6)0.0040 (6)
O170.0592 (8)0.0574 (8)0.0756 (9)0.0076 (6)0.0117 (6)0.0058 (7)
Geometric parameters (Å, º) top
C2—O71.2387 (17)C10—C151.374 (3)
C2—N11.3495 (17)C10—O161.377 (2)
C2—N31.3595 (17)C10—C111.380 (3)
C4—O81.2267 (17)C11—O171.362 (2)
C4—N31.3847 (19)C11—C121.378 (3)
C4—C51.4510 (19)C12—C131.374 (3)
C5—C61.336 (2)C12—H120.9300
C5—C91.495 (2)C13—C141.369 (4)
C6—N11.3795 (19)C13—H130.9300
C6—H60.9300C14—C151.379 (4)
C9—H9A0.9600C14—H140.9300
C9—H9B0.9600C15—H150.9300
C9—H9C0.9600O16—H1O0.86 (3)
N1—H1N0.871 (19)O17—H2O0.85 (3)
N3—H2N0.881 (19)
O7—C2—N1122.82 (12)C2—N3—H2N115.5 (12)
O7—C2—N3121.67 (12)C4—N3—H2N118.1 (12)
N1—C2—N3115.51 (13)C15—C10—O16118.86 (18)
O8—C4—N3118.67 (12)C15—C10—C11120.32 (19)
O8—C4—C5125.96 (13)O16—C10—C11120.81 (15)
N3—C4—C5115.36 (12)O17—C11—C12124.60 (18)
C6—C5—C4117.84 (13)O17—C11—C10115.79 (16)
C6—C5—C9123.77 (13)C12—C11—C10119.61 (18)
C4—C5—C9118.39 (12)C13—C12—C11120.0 (2)
C5—C6—N1122.78 (13)C13—C12—H12120.0
C5—C6—H6118.6C11—C12—H12120.0
N1—C6—H6118.6C14—C13—C12120.1 (2)
C5—C9—H9A109.5C14—C13—H13119.9
C5—C9—H9B109.5C12—C13—H13119.9
H9A—C9—H9B109.5C13—C14—C15120.4 (2)
C5—C9—H9C109.5C13—C14—H14119.8
H9A—C9—H9C109.5C15—C14—H14119.8
H9B—C9—H9C109.5C10—C15—C14119.5 (2)
C2—N1—C6122.13 (12)C10—C15—H15120.2
C2—N1—H1N115.0 (12)C14—C15—H15120.2
C6—N1—H1N122.8 (12)C10—O16—H1O109.8 (16)
C2—N3—C4126.36 (12)C11—O17—H2O113.0 (17)
O8—C4—C5—C6177.21 (15)C5—C4—N3—C21.9 (2)
N3—C4—C5—C61.9 (2)C15—C10—C11—O17177.65 (18)
O8—C4—C5—C92.0 (2)O16—C10—C11—O171.1 (2)
N3—C4—C5—C9178.95 (13)C15—C10—C11—C122.0 (3)
C4—C5—C6—N11.0 (2)O16—C10—C11—C12179.28 (16)
C9—C5—C6—N1179.90 (15)O17—C11—C12—C13177.97 (18)
O7—C2—N1—C6179.88 (14)C10—C11—C12—C131.6 (3)
N3—C2—N1—C60.4 (2)C11—C12—C13—C140.0 (3)
C5—C6—N1—C20.2 (2)C12—C13—C14—C151.3 (4)
O7—C2—N3—C4178.76 (14)O16—C10—C15—C14179.5 (2)
N1—C2—N3—C40.7 (2)C11—C10—C15—C140.7 (3)
O8—C4—N3—C2177.31 (14)C13—C14—C15—C101.0 (4)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1N···O7i0.871 (19)1.973 (19)2.842 (2)176 (2)
N3—H2N···O7ii0.881 (19)1.939 (19)2.814 (2)172 (2)
O16—H1O···O80.86 (3)1.94 (3)2.736 (2)154 (2)
O16—H1O···O170.86 (3)2.26 (2)2.678 (2)110.4 (19)
O17—H2O···O16iii0.85 (3)1.89 (3)2.728 (2)167 (2)
Symmetry codes: (i) x+1/2, y+1/2, z+1; (ii) x1/2, y+1/2, z+1; (iii) x1/2, y+1/2, z.
(II) 5-Methylpyrimidine-2,4(1H,3H)-dione–benzene-1,3-diol (2/1) top
Crystal data top
2C5H6N2O2·C6H6O2Dx = 1.430 Mg m3
Mr = 362.34Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, PbcnCell parameters from 5292 reflections
a = 6.9499 (7) Åθ = 3.0–27.8°
b = 9.0237 (10) ŵ = 0.11 mm1
c = 26.828 (3) ÅT = 294 K
V = 1682.5 (3) Å3Needle, colourless
Z = 40.18 × 0.11 × 0.09 mm
F(000) = 760
Data collection top
Bruker SMART APEX CCD area-detector
diffractometer
1804 reflections with I > 2σ(I)
ω scansRint = 0.027
Absorption correction: multi-scan
(SADABS; Bruker, 2001)
θmax = 28.3°, θmin = 1.5°
Tmin = 0.93, Tmax = 0.98h = 99
18036 measured reflectionsk = 1211
2053 independent reflectionsl = 3535
Refinement top
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.052H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.135 w = 1/[σ2(Fo2) + (0.0604P)2 + 0.6359P]
where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max = 0.001
2053 reflectionsΔρmax = 0.24 e Å3
132 parametersΔρmin = 0.24 e Å3
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C20.07636 (19)0.32869 (16)0.47064 (5)0.0316 (3)
C40.1030 (2)0.49840 (16)0.41648 (5)0.0325 (3)
C50.0782 (2)0.54865 (18)0.39597 (6)0.0375 (4)
C60.2403 (2)0.49198 (18)0.41510 (6)0.0390 (4)
H60.35780.52580.40300.047*
C90.0753 (3)0.6606 (2)0.35470 (8)0.0594 (5)
H9A0.20470.68910.34670.089*
H9B0.01520.61810.32580.089*
H9C0.00400.74620.36520.089*
N10.24038 (19)0.38586 (15)0.45190 (5)0.0377 (3)
H1N0.346 (3)0.354 (2)0.4646 (7)0.048 (5)*
N30.08942 (17)0.38759 (14)0.45211 (5)0.0331 (3)
H2N0.195 (3)0.355 (2)0.4653 (7)0.041 (5)*
O70.07500 (14)0.23058 (13)0.50296 (4)0.0413 (3)
O80.26309 (15)0.54574 (14)0.40549 (4)0.0425 (3)
C100.50000.7480 (2)0.25000.0400 (5)
H100.50000.85100.25000.048*
C110.4423 (2)0.67069 (18)0.29187 (6)0.0372 (4)
C120.4383 (3)0.51775 (19)0.29181 (7)0.0509 (5)
H120.39460.46590.31950.061*
C130.50000.4434 (3)0.25000.0655 (8)
H130.50000.34030.25000.079*
O140.3922 (2)0.74992 (15)0.33346 (5)0.0522 (4)
H1O0.346 (4)0.687 (3)0.3553 (9)0.075 (7)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C20.0256 (7)0.0362 (7)0.0331 (7)0.0012 (5)0.0001 (5)0.0023 (6)
C40.0305 (7)0.0362 (7)0.0309 (7)0.0003 (5)0.0034 (5)0.0014 (6)
C50.0349 (8)0.0377 (8)0.0399 (8)0.0014 (6)0.0008 (6)0.0062 (6)
C60.0296 (7)0.0413 (8)0.0461 (8)0.0033 (6)0.0066 (6)0.0065 (7)
C90.0467 (10)0.0650 (12)0.0665 (12)0.0041 (9)0.0016 (9)0.0327 (10)
N10.0233 (6)0.0433 (7)0.0464 (7)0.0022 (5)0.0002 (5)0.0097 (6)
N30.0226 (6)0.0407 (7)0.0359 (6)0.0013 (5)0.0003 (5)0.0068 (5)
O70.0265 (5)0.0512 (7)0.0463 (6)0.0010 (4)0.0008 (4)0.0178 (5)
O80.0312 (5)0.0527 (7)0.0436 (6)0.0047 (5)0.0053 (4)0.0108 (5)
C100.0448 (12)0.0300 (10)0.0453 (12)0.0000.0090 (10)0.000
C110.0355 (8)0.0387 (8)0.0375 (8)0.0010 (6)0.0032 (6)0.0026 (6)
C120.0727 (12)0.0378 (9)0.0423 (9)0.0026 (8)0.0095 (8)0.0070 (7)
C130.110 (3)0.0313 (12)0.0550 (15)0.0000.0145 (16)0.000
O140.0689 (9)0.0438 (7)0.0440 (7)0.0018 (6)0.0195 (6)0.0037 (5)
Geometric parameters (Å, º) top
C2—O71.2393 (18)N1—H1N0.86 (2)
C2—N11.3485 (18)N3—H2N0.86 (2)
C2—N31.3627 (18)C10—C11i1.3817 (19)
C4—O81.2276 (17)C10—C111.3818 (19)
C4—N31.3867 (19)C10—H100.9300
C4—C51.447 (2)C11—O141.3701 (19)
C5—C61.340 (2)C11—C121.380 (2)
C5—C91.499 (2)C12—C131.376 (2)
C6—N11.375 (2)C12—H120.9300
C6—H60.9300C13—C12i1.376 (2)
C9—H9A0.9600C13—H130.9300
C9—H9B0.9600O14—H1O0.88 (3)
C9—H9C0.9600
O7—C2—N1122.73 (13)C2—N1—H1N116.5 (13)
O7—C2—N3121.83 (13)C6—N1—H1N121.2 (13)
N1—C2—N3115.44 (13)C2—N3—C4126.18 (12)
O8—C4—N3118.57 (13)C2—N3—H2N116.0 (12)
O8—C4—C5126.03 (13)C4—N3—H2N117.7 (12)
N3—C4—C5115.39 (12)C11i—C10—C11119.4 (2)
C6—C5—C4117.83 (14)C11i—C10—H10120.3
C6—C5—C9123.46 (14)C11—C10—H10120.3
C4—C5—C9118.71 (13)O14—C11—C12121.17 (15)
C5—C6—N1122.74 (13)O14—C11—C10118.19 (15)
C5—C6—H6118.6C12—C11—C10120.63 (15)
N1—C6—H6118.6C13—C12—C11118.84 (17)
C5—C9—H9A109.5C13—C12—H12120.6
C5—C9—H9B109.5C11—C12—H12120.6
H9A—C9—H9B109.5C12i—C13—C12121.6 (2)
C5—C9—H9C109.5C12i—C13—H13119.2
H9A—C9—H9C109.5C12—C13—H13119.2
H9B—C9—H9C109.5C11—O14—H1O107.5 (17)
C2—N1—C6122.26 (13)
O8—C4—C5—C6175.07 (16)O7—C2—N3—C4179.22 (14)
N3—C4—C5—C64.2 (2)N1—C2—N3—C40.1 (2)
O8—C4—C5—C94.9 (3)O8—C4—N3—C2176.05 (14)
N3—C4—C5—C9175.78 (16)C5—C4—N3—C23.3 (2)
C4—C5—C6—N12.1 (2)C11i—C10—C11—O14177.76 (16)
C9—C5—C6—N1177.90 (18)C11i—C10—C11—C121.30 (12)
O7—C2—N1—C6178.27 (15)O14—C11—C12—C13176.48 (14)
N3—C2—N1—C62.6 (2)C10—C11—C12—C132.6 (2)
C5—C6—N1—C21.5 (3)C11—C12—C13—C12i1.26 (12)
Symmetry code: (i) x+1, y, z+1/2.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1N···O7ii0.86 (2)1.97 (2)2.8247 (17)175 (2)
N3—H2N···O7iii0.86 (2)1.97 (2)2.8336 (16)176 (2)
O14—H1O···O80.88 (3)1.94 (3)2.8167 (17)175 (2)
Symmetry codes: (ii) x1/2, y+1/2, z+1; (iii) x+1/2, y+1/2, z+1.
(III) 5-Methylpyrimidine-2,4(1H,3H)-dione–benzene-1,4-diol (2/1) top
Crystal data top
2C5H6N2O2·C6H6O2F(000) = 380
Mr = 362.34Dx = 1.453 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 14.204 (3) ÅCell parameters from 5536 reflections
b = 6.9634 (13) Åθ = 2.9–28.3°
c = 8.4505 (15) ŵ = 0.11 mm1
β = 97.639 (3)°T = 294 K
V = 828.4 (3) Å3Block, colourless
Z = 20.19 × 0.17 × 0.11 mm
Data collection top
Bruker SMART APEX CCD area-detector
diffractometer
1795 reflections with I > 2σ(I)
ω scansRint = 0.016
Absorption correction: multi-scan
(SADABS; Bruker, 2001)
θmax = 28.3°, θmin = 2.9°
Tmin = 0.95, Tmax = 0.99h = 1818
9216 measured reflectionsk = 89
1993 independent reflectionsl = 1111
Refinement top
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.042H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.123 w = 1/[σ2(Fo2) + (0.0761P)2 + 0.1217P]
where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
1993 reflectionsΔρmax = 0.30 e Å3
131 parametersΔρmin = 0.16 e Å3
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C20.05890 (8)0.07119 (14)0.68305 (13)0.0326 (2)
C40.16775 (7)0.11392 (15)0.54085 (13)0.0333 (2)
C50.20629 (8)0.06465 (15)0.48908 (14)0.0357 (3)
C60.16838 (8)0.22928 (16)0.53445 (13)0.0368 (3)
H60.19170.34510.50110.044*
C90.28532 (10)0.05661 (18)0.38818 (19)0.0506 (3)
H9A0.30000.18420.35610.076*
H9B0.26610.02020.29510.076*
H9C0.34050.00060.44860.076*
N10.09611 (7)0.23300 (13)0.62866 (11)0.0368 (2)
H1N0.0699 (10)0.201 (2)0.6705 (18)0.050 (4)*
N30.09643 (6)0.09626 (12)0.63644 (11)0.0339 (2)
H2N0.0694 (10)0.340 (2)0.6545 (18)0.047 (4)*
O70.00587 (6)0.07241 (10)0.76821 (11)0.0417 (2)
O80.19223 (6)0.27636 (11)0.50584 (11)0.0452 (2)
C100.40986 (8)0.46666 (16)0.41857 (14)0.0394 (3)
C110.43502 (8)0.39291 (17)0.57083 (14)0.0432 (3)
H110.39140.32100.61870.052*
C120.52483 (9)0.42616 (17)0.65162 (16)0.0455 (3)
H120.54140.37620.75360.055*
O130.32155 (7)0.43836 (14)0.33328 (12)0.0513 (3)
H3O0.2831 (14)0.376 (3)0.393 (2)0.074 (5)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C20.0362 (5)0.0249 (5)0.0370 (5)0.0006 (3)0.0054 (4)0.0011 (3)
C40.0335 (5)0.0285 (5)0.0381 (5)0.0019 (4)0.0054 (4)0.0001 (4)
C50.0371 (5)0.0317 (5)0.0388 (5)0.0020 (4)0.0067 (4)0.0027 (4)
C60.0426 (6)0.0280 (5)0.0404 (5)0.0052 (4)0.0072 (4)0.0021 (4)
C90.0514 (7)0.0412 (6)0.0638 (8)0.0004 (5)0.0252 (6)0.0059 (5)
N10.0447 (5)0.0219 (4)0.0451 (5)0.0004 (3)0.0110 (4)0.0015 (3)
N30.0384 (5)0.0216 (4)0.0433 (5)0.0003 (3)0.0105 (4)0.0007 (3)
O70.0467 (5)0.0267 (4)0.0556 (5)0.0012 (3)0.0211 (4)0.0011 (3)
O80.0476 (5)0.0294 (4)0.0617 (5)0.0043 (3)0.0193 (4)0.0024 (3)
C100.0383 (6)0.0342 (5)0.0473 (6)0.0009 (4)0.0117 (4)0.0013 (4)
C110.0430 (6)0.0410 (6)0.0487 (7)0.0067 (5)0.0172 (5)0.0043 (5)
C120.0475 (7)0.0466 (7)0.0437 (6)0.0037 (5)0.0115 (5)0.0074 (5)
O130.0431 (5)0.0542 (6)0.0565 (6)0.0096 (4)0.0061 (4)0.0078 (4)
Geometric parameters (Å, º) top
C2—O71.2412 (13)C9—H9C0.9600
C2—N11.3509 (13)N1—H2N0.879 (16)
C2—N31.3619 (13)N3—H1N0.886 (17)
C4—O81.2310 (13)C10—O131.3753 (15)
C4—N31.3825 (14)C10—C12i1.3841 (16)
C4—C51.4495 (14)C10—C111.3873 (18)
C5—C61.3439 (15)C11—C121.3839 (17)
C5—C91.4983 (16)C11—H110.9300
C6—N11.3805 (14)C12—C10i1.3841 (16)
C6—H60.9300C12—H120.9300
C9—H9A0.9600O13—H3O0.91 (2)
C9—H9B0.9600
O7—C2—N1123.04 (9)H9B—C9—H9C109.5
O7—C2—N3121.50 (9)C2—N1—C6122.36 (9)
N1—C2—N3115.46 (10)C2—N1—H2N115.1 (10)
O8—C4—N3118.33 (9)C6—N1—H2N122.5 (10)
O8—C4—C5125.85 (10)C2—N3—C4126.19 (9)
N3—C4—C5115.82 (9)C2—N3—H1N114.3 (9)
C6—C5—C4117.64 (10)C4—N3—H1N119.5 (9)
C6—C5—C9123.59 (10)O13—C10—C12i117.99 (11)
C4—C5—C9118.78 (10)O13—C10—C11122.52 (10)
C5—C6—N1122.51 (9)C12i—C10—C11119.49 (11)
C5—C6—H6118.7C12—C11—C10120.17 (11)
N1—C6—H6118.7C12—C11—H11119.9
C5—C9—H9A109.5C10—C11—H11119.9
C5—C9—H9B109.5C11—C12—C10i120.34 (12)
H9A—C9—H9B109.5C11—C12—H12119.8
C5—C9—H9C109.5C10i—C12—H12119.8
H9A—C9—H9C109.5C10—O13—H3O110.5 (12)
O8—C4—C5—C6177.60 (11)C5—C6—N1—C20.56 (18)
N3—C4—C5—C61.58 (16)O7—C2—N3—C4179.34 (10)
O8—C4—C5—C92.16 (19)N1—C2—N3—C40.15 (17)
N3—C4—C5—C9178.65 (10)O8—C4—N3—C2178.10 (10)
C4—C5—C6—N10.82 (17)C5—C4—N3—C21.15 (17)
C9—C5—C6—N1179.42 (11)O13—C10—C11—C12179.81 (11)
O7—C2—N1—C6179.78 (10)C12i—C10—C11—C120.1 (2)
N3—C2—N1—C61.05 (16)C10—C11—C12—C10i0.1 (2)
Symmetry code: (i) x+1, y1, z+1.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H2N···O7ii0.879 (16)2.002 (17)2.8784 (12)174.6 (14)
N3—H1N···O7iii0.886 (17)1.926 (17)2.8111 (12)176.1 (14)
O13—H3O···O80.91 (2)1.84 (2)2.7359 (13)171.6 (18)
Symmetry codes: (ii) x, y+1/2, z+3/2; (iii) x, y1/2, z+3/2.
(IV) 5-Methylpyrimidine-2,4(1H,3H)-dione–benzene-1,2,3-triol (1/2) top
Crystal data top
C5H6N2O2·2C6H6O3Z = 2
Mr = 378.33F(000) = 396
Triclinic, P1Dx = 1.484 Mg m3
a = 6.9652 (13) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.2125 (19) ÅCell parameters from 5658 reflections
c = 12.951 (2) Åθ = 2.9–28.0°
α = 97.218 (3)°µ = 0.12 mm1
β = 99.189 (3)°T = 294 K
γ = 108.549 (3)°Plate, colourless
V = 846.7 (3) Å30.17 × 0.06 × 0.05 mm
Data collection top
Bruker SMART APEX CCD area-detector
diffractometer
3295 reflections with I > 2σ(I)
ω scansRint = 0.026
Absorption correction: multi-scan
(SADABS; Bruker, 2001)
θmax = 28.1°, θmin = 1.6°
Tmin = 0.93, Tmax = 0.97h = 99
9492 measured reflectionsk = 1313
3876 independent reflectionsl = 1617
Refinement top
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.043H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.131 w = 1/[σ2(Fo2) + (0.0811P)2 + 0.1267P]
where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
3876 reflectionsΔρmax = 0.40 e Å3
277 parametersΔρmin = 0.21 e Å3
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C20.3691 (2)0.78633 (13)0.46045 (10)0.0347 (3)
C40.33483 (19)0.79165 (13)0.26989 (10)0.0318 (3)
C50.24976 (19)0.63993 (13)0.24749 (10)0.0344 (3)
C60.2361 (2)0.57387 (14)0.33104 (11)0.0389 (3)
H60.18480.47610.31790.047*
C90.1803 (2)0.56287 (15)0.13386 (11)0.0437 (3)
H9A0.12700.46350.13230.065*
H9B0.29590.58440.09940.065*
H9C0.07380.59160.09730.065*
N10.2946 (2)0.64448 (12)0.43483 (9)0.0400 (3)
H1N0.297 (3)0.602 (2)0.4876 (16)0.056 (5)*
N30.38754 (18)0.85454 (11)0.37635 (8)0.0349 (3)
H2N0.443 (3)0.951 (2)0.3935 (14)0.051 (5)*
O70.41733 (18)0.85216 (10)0.55386 (7)0.0448 (3)
O80.36205 (16)0.86785 (10)0.20225 (7)0.0415 (2)
C10A0.0768 (2)0.84928 (13)0.75311 (10)0.0338 (3)
C11A0.24804 (18)0.84800 (12)0.82449 (9)0.0304 (3)
C12A0.2351 (2)0.83645 (13)0.92954 (10)0.0335 (3)
C13A0.0518 (2)0.83135 (14)0.96268 (11)0.0397 (3)
H13A0.04250.82581.03290.048*
C14A0.1163 (2)0.83453 (16)0.89047 (12)0.0437 (3)
H14A0.23760.83150.91310.052*
C15A0.1064 (2)0.84208 (15)0.78540 (12)0.0415 (3)
H15A0.22060.84230.73720.050*
O16A0.08891 (17)0.86224 (11)0.64914 (7)0.0415 (2)
H1O0.205 (4)0.852 (2)0.6359 (17)0.069 (6)*
O17A0.42668 (14)0.85211 (10)0.78862 (7)0.0353 (2)
H2O0.504 (3)0.942 (2)0.7919 (14)0.049 (5)*
O18A0.40493 (16)0.83019 (12)0.99403 (8)0.0452 (3)
H3O0.389 (3)0.833 (2)1.0608 (16)0.055 (5)*
C10B0.2995 (2)0.48722 (14)0.69600 (11)0.0370 (3)
C11B0.2169 (2)0.36068 (14)0.62317 (10)0.0357 (3)
C12B0.1639 (2)0.23452 (14)0.66014 (11)0.0385 (3)
C13B0.1944 (2)0.23437 (15)0.76864 (12)0.0433 (3)
H13B0.15990.14990.79320.052*
C14B0.2767 (2)0.36140 (16)0.84004 (11)0.0434 (3)
H14B0.29700.36150.91280.052*
C15B0.3291 (2)0.48821 (15)0.80470 (11)0.0407 (3)
H15B0.38350.57290.85320.049*
O16B0.3469 (2)0.60497 (11)0.65181 (9)0.0547 (3)
H4O0.390 (3)0.674 (2)0.6982 (17)0.060 (6)*
O17B0.19057 (19)0.36604 (12)0.51664 (8)0.0487 (3)
H5O0.127 (4)0.287 (3)0.4805 (19)0.076 (7)*
O18B0.0806 (2)0.11680 (11)0.58150 (9)0.0582 (3)
H6O0.070 (3)0.047 (3)0.6076 (17)0.070 (6)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C20.0429 (6)0.0343 (6)0.0263 (6)0.0104 (5)0.0109 (5)0.0076 (5)
C40.0346 (6)0.0351 (6)0.0259 (6)0.0112 (5)0.0087 (4)0.0059 (5)
C50.0365 (6)0.0339 (6)0.0307 (6)0.0106 (5)0.0072 (5)0.0029 (5)
C60.0483 (7)0.0297 (6)0.0351 (7)0.0096 (5)0.0079 (5)0.0039 (5)
C90.0517 (8)0.0405 (7)0.0331 (7)0.0131 (6)0.0058 (6)0.0014 (5)
N10.0558 (7)0.0331 (6)0.0297 (6)0.0111 (5)0.0108 (5)0.0098 (4)
N30.0470 (6)0.0293 (5)0.0262 (5)0.0083 (5)0.0109 (4)0.0056 (4)
O70.0665 (7)0.0371 (5)0.0259 (5)0.0099 (5)0.0130 (4)0.0057 (4)
O80.0551 (6)0.0395 (5)0.0281 (5)0.0116 (4)0.0120 (4)0.0091 (4)
C10A0.0403 (6)0.0303 (6)0.0300 (6)0.0111 (5)0.0070 (5)0.0063 (4)
C11A0.0339 (6)0.0281 (5)0.0288 (6)0.0090 (4)0.0093 (5)0.0051 (4)
C12A0.0392 (6)0.0331 (6)0.0274 (6)0.0108 (5)0.0080 (5)0.0057 (4)
C13A0.0471 (7)0.0424 (7)0.0325 (6)0.0150 (6)0.0167 (5)0.0081 (5)
C14A0.0398 (7)0.0471 (8)0.0489 (8)0.0163 (6)0.0187 (6)0.0107 (6)
C15A0.0371 (7)0.0452 (7)0.0432 (8)0.0162 (6)0.0059 (6)0.0097 (6)
O16A0.0491 (6)0.0497 (6)0.0282 (5)0.0194 (5)0.0068 (4)0.0117 (4)
O17A0.0372 (5)0.0373 (5)0.0328 (5)0.0119 (4)0.0136 (4)0.0069 (4)
O18A0.0465 (6)0.0649 (7)0.0277 (5)0.0226 (5)0.0081 (4)0.0124 (4)
C10B0.0422 (7)0.0334 (6)0.0354 (7)0.0118 (5)0.0092 (5)0.0090 (5)
C11B0.0403 (6)0.0361 (6)0.0316 (6)0.0139 (5)0.0076 (5)0.0079 (5)
C12B0.0431 (7)0.0336 (6)0.0378 (7)0.0123 (5)0.0066 (5)0.0079 (5)
C13B0.0518 (8)0.0385 (7)0.0409 (8)0.0140 (6)0.0110 (6)0.0157 (6)
C14B0.0500 (8)0.0500 (8)0.0314 (7)0.0171 (6)0.0100 (6)0.0112 (6)
C15B0.0461 (7)0.0407 (7)0.0330 (7)0.0135 (6)0.0073 (5)0.0039 (5)
O16B0.0888 (9)0.0311 (5)0.0366 (6)0.0111 (5)0.0111 (6)0.0076 (4)
O17B0.0716 (7)0.0369 (5)0.0312 (5)0.0121 (5)0.0060 (5)0.0075 (4)
O18B0.0927 (9)0.0308 (5)0.0408 (6)0.0134 (6)0.0014 (6)0.0069 (4)
Geometric parameters (Å, º) top
C2—O71.2452 (16)C13A—H13A0.9300
C2—N11.3505 (17)C14A—C15A1.384 (2)
C2—N31.3663 (16)C14A—H14A0.9300
C4—O81.2407 (15)C15A—H15A0.9300
C4—N31.3836 (16)O16A—H1O0.89 (2)
C4—C51.4436 (18)O17A—H2O0.90 (2)
C5—C61.3456 (19)O18A—H3O0.89 (2)
C5—C91.5028 (18)C10B—O16B1.3650 (17)
C6—N11.3739 (17)C10B—C15B1.3881 (19)
C6—H60.9300C10B—C11B1.3922 (19)
C9—H9A0.9600C11B—O17B1.3729 (16)
C9—H9B0.9600C11B—C12B1.3908 (19)
C9—H9C0.9600C12B—O18B1.3708 (17)
N1—H1N0.85 (2)C12B—C13B1.388 (2)
N3—H2N0.92 (2)C13B—C14B1.387 (2)
C10A—O16A1.3827 (16)C13B—H13B0.9300
C10A—C15A1.388 (2)C14B—C15B1.386 (2)
C10A—C11A1.3921 (18)C14B—H14B0.9300
C11A—O17A1.3864 (15)C15B—H15B0.9300
C11A—C12A1.3951 (17)O16B—H4O0.81 (2)
C12A—O18A1.3592 (16)O17B—H5O0.83 (3)
C12A—C13A1.3982 (19)O18B—H6O0.82 (2)
C13A—C14A1.389 (2)
O7—C2—N1123.07 (12)C14A—C13A—C12A119.87 (12)
O7—C2—N3121.49 (12)C14A—C13A—H13A120.1
N1—C2—N3115.45 (11)C12A—C13A—H13A120.1
O8—C4—N3118.63 (11)C15A—C14A—C13A121.10 (13)
O8—C4—C5125.50 (12)C15A—C14A—H14A119.4
N3—C4—C5115.87 (11)C13A—C14A—H14A119.4
C6—C5—C4117.53 (11)C14A—C15A—C10A118.89 (13)
C6—C5—C9122.94 (12)C14A—C15A—H15A120.6
C4—C5—C9119.53 (12)C10A—C15A—H15A120.6
C5—C6—N1122.91 (12)C10A—O16A—H1O109.7 (14)
C5—C6—H6118.5C11A—O17A—H2O108.6 (11)
N1—C6—H6118.5C12A—O18A—H3O110.7 (12)
C5—C9—H9A109.5O16B—C10B—C15B124.48 (13)
C5—C9—H9B109.5O16B—C10B—C11B114.95 (12)
H9A—C9—H9B109.5C15B—C10B—C11B120.57 (12)
C5—C9—H9C109.5O17B—C11B—C12B122.51 (12)
H9A—C9—H9C109.5O17B—C11B—C10B118.05 (12)
H9B—C9—H9C109.5C12B—C11B—C10B119.44 (12)
C2—N1—C6122.16 (12)O18B—C12B—C13B125.14 (13)
C2—N1—H1N115.2 (14)O18B—C12B—C11B114.43 (13)
C6—N1—H1N122.4 (14)C13B—C12B—C11B120.43 (13)
C2—N3—C4126.04 (11)C14B—C13B—C12B119.35 (13)
C2—N3—H2N115.8 (11)C14B—C13B—H13B120.3
C4—N3—H2N118.2 (11)C12B—C13B—H13B120.3
O16A—C10A—C15A118.78 (12)C15B—C14B—C13B121.05 (13)
O16A—C10A—C11A120.24 (12)C15B—C14B—H14B119.5
C15A—C10A—C11A120.95 (12)C13B—C14B—H14B119.5
O17A—C11A—C10A119.23 (11)C14B—C15B—C10B119.16 (13)
O17A—C11A—C12A120.88 (11)C14B—C15B—H15B120.4
C10A—C11A—C12A119.83 (11)C10B—C15B—H15B120.4
O18A—C12A—C11A116.90 (11)C10B—O16B—H4O109.6 (14)
O18A—C12A—C13A123.79 (12)C11B—O17B—H5O110.4 (16)
C11A—C12A—C13A119.31 (12)C12B—O18B—H6O109.7 (16)
O8—C4—C5—C6178.31 (13)O18A—C12A—C13A—C14A178.23 (13)
N3—C4—C5—C62.22 (18)C11A—C12A—C13A—C14A1.5 (2)
O8—C4—C5—C91.9 (2)C12A—C13A—C14A—C15A0.3 (2)
N3—C4—C5—C9177.60 (12)C13A—C14A—C15A—C10A1.3 (2)
C4—C5—C6—N11.6 (2)O16A—C10A—C15A—C14A177.56 (13)
C9—C5—C6—N1178.25 (13)C11A—C10A—C15A—C14A0.4 (2)
O7—C2—N1—C6177.90 (13)O16B—C10B—C11B—O17B0.37 (19)
N3—C2—N1—C61.7 (2)C15B—C10B—C11B—O17B179.85 (13)
C5—C6—N1—C20.5 (2)O16B—C10B—C11B—C12B179.83 (13)
O7—C2—N3—C4178.71 (13)C15B—C10B—C11B—C12B0.0 (2)
N1—C2—N3—C40.9 (2)O17B—C11B—C12B—O18B1.0 (2)
O8—C4—N3—C2179.45 (12)C10B—C11B—C12B—O18B178.84 (13)
C5—C4—N3—C21.05 (19)O17B—C11B—C12B—C13B179.69 (13)
O16A—C10A—C11A—O17A3.50 (18)C10B—C11B—C12B—C13B0.5 (2)
C15A—C10A—C11A—O17A178.53 (12)O18B—C12B—C13B—C14B178.74 (15)
O16A—C10A—C11A—C12A179.29 (11)C11B—C12B—C13B—C14B0.5 (2)
C15A—C10A—C11A—C12A1.32 (19)C12B—C13B—C14B—C15B0.1 (2)
O17A—C11A—C12A—O18A0.30 (18)C13B—C14B—C15B—C10B0.4 (2)
C10A—C11A—C12A—O18A177.46 (11)O16B—C10B—C15B—C14B179.37 (14)
O17A—C11A—C12A—C13A179.43 (11)C11B—C10B—C15B—C14B0.4 (2)
C10A—C11A—C12A—C13A2.27 (18)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1N···O16B0.85 (2)2.09 (2)2.8713 (17)151 (2)
N1—H1N···O17B0.85 (2)2.38 (2)3.0701 (16)138 (2)
N3—H2N···O7i0.92 (2)1.91 (2)2.8237 (16)172 (2)
O16A—H1O···O70.89 (2)1.95 (2)2.7903 (16)156 (2)
O16A—H1O···O17A0.89 (2)2.31 (2)2.7665 (14)112 (2)
O17A—H2O···O8i0.90 (2)1.85 (2)2.7460 (15)174 (2)
O18A—H3O···O8ii0.89 (2)1.87 (2)2.7530 (14)172 (2)
O16B—H4O···O17A0.81 (2)1.96 (2)2.7364 (15)163 (2)
O17B—H5O···O16Aiii0.83 (3)2.12 (3)2.8904 (15)155 (2)
O17B—H5O···O18B0.83 (3)2.27 (2)2.6970 (16)112 (2)
O18B—H6O···O16Aiv0.82 (2)2.06 (2)2.8602 (16)166 (2)
Symmetry codes: (i) x+1, y+2, z+1; (ii) x, y, z+1; (iii) x, y+1, z+1; (iv) x, y1, z.
 

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