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The preferred hydrogen-bonding patterns in the crystal structures of 5-propyl-2-thio­uracil, C7H10N2OS, (I), 5-meth­oxy-2-thio­uracil, C5H6N2O2S, (II), 5-meth­oxy-2-thio­uracil–N,N-di­methyl­acetamide (1/1), C5H6N2O2S·C4H9NO, (IIa), 5,6-dimethyl-2-thio­uracil, C6H8N2OS, (III), 5,6-dimethyl-2-thio­uracil–1-methyl­pyrrolidin-2-one (1/1), C6H8N2OS·C5H9NO, (IIIa), 5,6-dimethyl-2-thio­uracil–N,N-di­methyl­formamide (2/1), 2C6H8N2OS·C3H7NO, (IIIb), 5,6-dimethyl-2-thio­uracil–N,N-di­methyl­acetamide (2/1), 2C6H8N2OS·C4H9NO, (IIIc), and 5,6-dimethyl-2-thio­uracil–di­methyl ­sulfoxide (2/1), 2C6H8N2OS·C2H6OS, (IIId), were analysed. All eight structures contain R22(8) patterns. In (II), (IIa), (III) and (IIIa), they are formed by two N—H...S hydrogen bonds, and in (I) by alternating pairs of N—H...S and N—H...O hydrogen bonds. In contrast, the structures of (IIIb), (IIIc) and (IIId) contain `mixed' R22(8) patterns with one N—H...S and one N—H...O hydrogen bond, as well as R22(8) motifs with two N—H...O hydrogen bonds.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S2053229614001387/eg3147sup1.cif
Contains datablocks I, II, IIa, III, IIIa, IIIb, IIIc, IIId, global

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Structure factor file (CIF format) https://doi.org/10.1107/S2053229614001387/eg3147Isup2.hkl
Contains datablock I

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Structure factor file (CIF format) https://doi.org/10.1107/S2053229614001387/eg3147IIsup3.hkl
Contains datablock II

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Structure factor file (CIF format) https://doi.org/10.1107/S2053229614001387/eg3147IIasup4.hkl
Contains datablock IIa

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Structure factor file (CIF format) https://doi.org/10.1107/S2053229614001387/eg3147IIIsup5.hkl
Contains datablock III

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Structure factor file (CIF format) https://doi.org/10.1107/S2053229614001387/eg3147IIIasup6.hkl
Contains datablock IIIa

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Structure factor file (CIF format) https://doi.org/10.1107/S2053229614001387/eg3147IIIbsup7.hkl
Contains datablock IIIb

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Structure factor file (CIF format) https://doi.org/10.1107/S2053229614001387/eg3147IIIcsup8.hkl
Contains datablock IIIc

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Structure factor file (CIF format) https://doi.org/10.1107/S2053229614001387/eg3147IIIdsup9.hkl
Contains datablock IIId

pdf

Portable Document Format (PDF) file https://doi.org/10.1107/S2053229614001387/eg3147sup10.pdf
Packing diagram for (I) showing the tubular arrangement of the chains

CCDC references: 982412; 982413; 982414; 982415; 982416; 982417; 982418; 982419

Introduction top

Active pharmaceutical ingredients (APIs) are usually delivered as solid drugs containing a crystalline form of the API. Due to their higher stablility and reproducibility, the use of crystalline forms is favoured over amorphous forms (Shan & Zaworotko, 2008). Because of poor solubilities APIs may show a low bioavailability. New crystalline forms of APIs with higher solubility and therefore improved bioavailability can be obtained by synthesizing pharmaceutical co-crystals (Blagden et al., 2007; Schultheiss & Newman, 2009; Vishweshwar et al., 2006). Since non-covalent inter­actions like hydrogen bonds play a dominant role in the molecular recognition process during co-crystal formation, it is helpful to know the preferred hydrogen-bonding pattern of an API.

2-Thio­uracil derivatives are potential candidates for the preparation of pharmaceutical co-crystals. They show anti-thyroid activity, since they inhibit the biosynthesis of the thyroid hormone thyroxine as well as its deiodinative metabolism in peripheral tissues, whereby the relative anti-thyroid activity depends on the residues at atoms C5 and C6 of the pyrimidine ring (Hershman & Van Middlesworth, 1962; Hershman, 1964; Visser et al., 1979). In crystal structures of 2-thio­uracil derivatives, R22(8) (Bernstein et al., 1995) is the most abundant hydrogen-bonding pattern (Hützler & Bolte, 2013a); these patterns consist of either two N—H···S or two N—H···O hydrogen bonds [`pure' R22(8) patterns]. In order to find also `mixed' R22(8) patterns consisting of one N—H···S and one N—H···O hydrogen bond, we investigated the three 2-thio­uracil derivatives 5-propyl-2-thio­uracil, 5-meth­oxy-2-thio­uracil and 5,6-di­methyl-2-thio­uracil crystallized alone and as co-crystals with a variety of solvents.

Experimental top

Synthesis and crystallization top

Isothermal solvent evaporation experiments under different conditions with commercially available 2-thio­uracil derivatives and various solvents in which they show an appropriate solubility yielded the title eight new crystal structures, (I)-(IIId) (Table 1). All solvents were used as supplied without further purification. In order to optimize the crystal quality, experiments at different temperatures and with varied crystallization rates were carried out. However, for structures (IIa), (IIIa) and (IIId) only moderate improvement of the crystal quality could be observed.

Refinement top

Crystal data, data collection and structure refinement details are summarized in Table 2. All H atoms except those of the disordered solvent molecules were initially located by difference Fourier synthesis. Subsequently, all H atoms bonded to C atoms were refined using a riding model, with methyl C—H = 0.98 Å, secondary C—H = 0.99 Å and aromatic C—H = 0.95 Å, and with Uiso(H) = 1.5Ueq(C) for methyl H atoms or 1.2Ueq(C) for secondary and aromatic H atoms. For all methyl groups, except those of the disordered solvent molecules, free rotation about their local threefold axis was allowed.

In (II), (IIa), (IIIb), (IIIc) and (IIId), isotropic refinement of N-bound H atoms resulted in the isotropic displacement parameters of the H atoms being smaller than the corresponding equivalent displacement parameters of the N atoms. Therefore, the isotropic displacement parameters of the H atoms were coupled to the equivalent displacement parameters of the parent N atoms, with Uiso(H) = 1.2Ueq(N). Additionally, in (II), (IIa), (III), (IIIc) and (IIId) the N—H distances were restrained to 0.88 (2) Å.

In (IIa), the DMAC molecules are disordered over a pseudo-mirror plane along O21(X/Y)···C32(X/Y) lying perpendicular to the plane through all non-H atoms of X/Y [site-occupancy factors for the major occupied orientation of 0.669 (12) for X and 0.756 (11) for Y]. For the solvent molecules, similarity restraints for the 1,2 and 1,3 distances were applied, as well as the similar-ADP restraint (SIMU) and rigid-bond restraint (DELU) (SHELXL97; Sheldrick, 2008).

In (III), an isotropic extinction parameter was refined. In (IIIc), the DMAC molecule shows disorder over two equally occupied positions which do not lie in a common plane. Similarity restraints for the 1,2 and 1,3 distances were applied. The methyl groups at C5 of both 5,6-di­methyl-2-thio­uracil molecules show a rotational disorder [site-occupancy factors for the major occupied orientation of 0.70 (2) for C51A and 0.57 (2) for C51B]. In (IIa) and (IIId), respectively, three reflections with bad Fo/Fc agreement were omitted.

Results and discussion top

5-Propyl-2-thio­uracil, (I), crystallizes in the triclinic space group P1 with two molecules, A and B, in the asymmetric unit (Fig. 1). The pyrimidine rings of both molecules are planar [r.m.s. deviations for all non-H atoms of the rings = 0.029 Å (for A) and 0.022 Å (for B)] and are tilted towards each other, enclosing a dihedral angle of 30.59 (4)°. The propyl groups exhibit different conformations in A and B: whereas the side chain of molecule A is twisted, with the planes through the ring and the propyl group enclosing a dihedral angle of 73.18 (8)°, it is extended in molecule B, with a dihedral angle of 2.0 (3)°. The molecules are connected by alternating R22(8) inter­actions consisting of either two N—H···S or two N—H···O hydrogen bonds, resulting in chains running along the c axis (Fig. 2, Table 3). In the crystal packing, adjacent chains show a tubular arrangement (see extra figure in supplementary information).

5-Meth­oxy-2-thio­uracil, (II), crystallizes in the monoclinic space group P21/c with one planar molecule in the asymmetric unit [r.m.s. deviation for all non-H atoms = 0.012 Å], whereby atoms C4A and C52A exhibit an anti-periplanar conformation (Fig. 3). In the crystal packing, the molecules are connected to homodimers stabilized by R22(8) N—H···S hydrogen bonds. Adjacent homodimers are linked to each other by bifurcated R21(5) N—H···O hydrogen bonds and enclose a dihedral angle of 6.75 (7)°, resulting in layers parallel to (102) (Fig. 4, Table 4).

The DMAC solvate, (IIa), crystallizes in the monoclinic space group P21/m. The asymmetric unit consists of two molecules of 5-meth­oxy-2-thio­uracil, A and B, and two disordered DMAC molecules, whereby all four molecules lie on a mirror plane. Molecules A and B are connected by R22(8) N—H···S hydrogen bonds and show further N—H···O hydrogen bonds with the solvent molecules (Fig. 5, Table 5). In the crystal packing, the AB homodimers are arranged parallel to (010) (Fig. 6).

5,6-Di­methyl-2-thio­uracil, (III), crystallizes in the monoclinic space group P21/c with one planar molecule in the asymmetric unit [r.m.s. deviation for all non-H atoms = 0.037 Å] (Fig. 7). The molecules show R22(8) N—H···S hydrogen-bonding inter­actions stabilizing the homodimers, which are further connected by N—H···O hydrogen bonds, yielding R44(16) patterns and thus forming ribbons running along the a axis (Fig. 8, Table 6).

The NMP solvate, (IIIa), crystallizes in the orthorhombic space group Pbca with one planar 5,6-di­methyl-2-thio­uracil molecule, A, [r.m.s. deviation for all non-H atoms = 0.015 Å] and one NMP molecule, X, in the asymmetric unit, which are connected by an N—H···O hydrogen bond (Fig. 9). The planes through all non-H atoms of A and X, respectively, enclose a dihedral angle of 55.49 (6)°. In the crystal packing, the 5,6-di­methyl-2-thio­uracil molecules form dimers parallel to (010) stabilized by R22(8) N—H···S hydrogen bonds (Fig. 10, Table 7).

The DMF solvate, (IIIb), crystallizes in the triclinic space group P1 with two 5,6-di­methyl-2-thio­uracil molecules, A and B, and one solvent molecule, X, in the asymmetric unit; all three molecules lie in a common plane [r.m.s. deviation for all non-H atoms = 0.048 Å]. This time molecules A and B are linked by one N—H···S and one N—H···O hydrogen bond, thus forming a `mixed' R22(8) pattern, and molecule B is further connected to the solvent molecule by an N—H···O hydrogen bond (Fig. 11). In the crystal packing, the 5,6-di­methyl-2-thio­uracil molecules form tetra­mers through two additional R22(8) N—H···O hydrogen bonds. The tetra­mers are arranged parallel to (213) and show only van der Waals inter­actions between each other (Fig. 12, Table 8).

The asymmetric unit of the DMAC solvate, (IIIc), which also crystallizes in the space group P1, consists of two 5,6-di­methyl-2-thio­uracil molecules, A and B, and one DMAC molecule. This last is disordered over two positions, X and Y, whereby only X lies in a common plane with A and B (Fig. 13a; r.m.s. deviation for all non-H atoms of A, B and X = 0.096 Å). The planes through X and Y enclose a dihedral angle of 70.71 (16)° (Fig. 13b). As in (IIIb), molecules A and B are connected by a `mixed' R22(8) pattern consisting of one N—H···S and one N—H···O hydrogen bond, and molecule B forms one additional N—H···O hydrogen bond with the solvent molecule. Stabilized by two further R22(8) N—H···O hydrogen bonds, the 5,6-di­methyl-2-thio­uracil molecules are connected into tetra­mers that are arranged parallel to (210) (Fig. 14, Table 9).

Compound (IIId) crystallizes in the monoclinic space group P21/n with two coplanar 5,6-di­methyl-2-thio­uracil molecules, A and B (r.m.s. deviation for all non-H atoms = 0.062 Å), and one DMSO molecule, X, in the asymmetric unit (Fig. 15). The planes through molecules A and B and through all non-H atoms of X, respectively, are almost perpendicular [dihedral angle = 78.93 (17)°]. Molecules A and B are again connected to each other via a `mixed' R22(8) pattern, and molecule B is further connected to X by an N—H···O hydrogen bond. Similar to (IIIc), in the crystal structure one additional R22(8) N—H···O hydrogen-bonding inter­action is formed between molecules A, yielding tetra­mers that are arranged alternately parallel to (221) and (221), respectively (Fig. 16, Table 10).

All eight structures contain R22(8) homodimers, which is in agreement with the result of a previous Cambridge Structural Database (CSD; Allen, 2002) substructure search for 2-thio­uracil derivatives (Hützler & Bolte, 2013a). In (I), (II), (IIa), (III) and (IIIa), the R22(8) motifs consist of two N—H···S hydrogen bonds, and (I) shows additional R22(8) motifs consisting of two N—H···O hydrogen bonds. In (IIIb), (IIIc) and (IIId), `mixed' R22(8) patterns containing one N—H···S and one N—H···O hydrogen bond are formed, as well as R22(8) motifs with two N—H···O hydrogen bonds. These three structures show the same hydrogen-bonding pattern between the 5,6-di­methyl-2-thio­uracil molecules and the respective solvent molecules, while the crystal packing of the tetra­mers is clearly different.

In structures (IIa) and (IIIa), the O atoms of the 2-thio­uracil group do not form hydrogen bonds but participate only in van der Waals inter­actions. Comparing (I) with the structure of the isomeric compound 6-propyl-2-thio­uracil (CSD refcode UXIXUV01; Tutughamiarso & Egert, 2011), equal hydrogen-bonding patterns are found in both structures but differences are observed for the conformation of the propyl side-chains. Whereas the dihedral angle between the planes through the propyl group and the pyrimidine ring is similar for both molecules in UXIXUV01 [26.0 (2) and 29.8 (2)°, respectively], it is clearly different in (I) [73.18 (8) and 2.0 (3)°]. A search of the CSD (Version 5.34 of November 2012, plus three updates; Allen, 2002) yielded one further structure of each of the two isomers, namely the structure of the dioxane monosolvate of 5-propyl-2-thio­uracil (Hützler & Bolte, 2013b) and the dioxane hemisolvate of 6-propyl-2-thio­uracil (refcode BUWYOH; Okabe et al., 1983). In both structures, R22(8) N—H···O homodimers are formed and the propyl side-chains are coplanar with the pyrimidine rings, whereas the S atoms do not participate in hydrogen bonds.

In summary, and in agreement with our previous work on 2-thio­uracil derivatives, R22(8) is the favoured hydrogen-bonding pattern in all eight structures (I)–(IIId). In five of the structures, R22(8) N—H···S hydrogen bonds are formed, and three structures contain `mixed' R22(8) patterns with one N—H···S and one N—H···O hydrogen bond. Additional R22(8) N—H···O hydrogen bonds are observed in four of these structures.

Related literature top

For related literature, see: Allen (2002); Bernstein et al. (1995); Blagden et al. (2007); Hützler & Bolte (2013a, 2013b); Hershman (1964); Hershman & Van Middlesworth (1962); Okabe et al. (1983); Schultheiss & Newman (2009); Shan & Zaworotko (2008); Sheldrick (2008); Tutughamiarso & Egert (2011); Vishweshwar et al. (2006); Visser et al. (1979).

Computing details top

For all compounds, data collection: X-AREA (Stoe & Cie, 2001); cell refinement: X-AREA (Stoe & Cie, 2001); data reduction: X-AREA (Stoe & Cie, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2008) and XP in SHELXTL-Plus (Sheldrick, 2008); software used to prepare material for publication: publCIF (Westrip, 2010).

Figures top
Fig. 1. A perspective view of (I), showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. Dashed lines indicate N—H···S hydrogen bonds.

Fig. 2. A partial packing diagram for (I). N—H···S and N—H···O hydrogen bonds are shown as dashed lines. [Symmetry code: (i) x, y, z - 1.]

Fig. 3. A perspective view of (II), showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level.

Fig. 4. A partial packing diagram for (II), showing a layer parallel to (102). Hydrogen bonds are shown as dashed lines. [Symmetry codes: (i) x + 1, -y + 3/2, z + 1/2; (ii) -x + 1, -y + 1, -z + 1.]

Fig. 5. A perspective view of (IIa), showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. Dashed lines indicate hydrogen bonds. The dimethylacetamide molecules X and Y are disordered and only the major occupied sites are shown.

Fig. 6. A partial packing diagram for (IIa), showing the dimers arranged parallel to (010). Hydrogen bonds are shown as dashed lines.

Fig. 7. A perspective view of (III), showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level.

Fig. 8. A partial packing diagram for (III). Hydrogen bonds are shown as dashed lines. [Symmetry codes: (i) -x + 1, -y + 1, -z + 1; (ii) x - 1, y, z.]

Fig. 9. A perspective view of (IIIa), showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. The dashed line indicates an N—H···O hydrogen bond.

Fig. 10. A partial packing diagram for (IIIa). Hydrogen bonds are shown as dashed lines. [Symmetry code: (i) -x + 2, -y + 1, -z + 1.]

Fig. 11. A perspective view of (IIIb), showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. Dashed lines indicate hydrogen bonds.

Fig. 12. A partial packing diagram for (IIIb). Hydrogen bonds are shown as dashed lines. [Symmetry code: (i) -x, -y - 1, -z + 1.]

Fig. 13. A perspective view of (IIIc), showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. In (a) only site X, and in (b) only site Y, of the disordered DMAC molecule is shown (site occupancy factors of 0.50). Dashed lines indicate hydrogen bonds.

Fig. 14. A partial packing diagram for (IIIc). Hydrogen bonds are shown as dashed lines. The disordered DMAC molecules are not displayed. [Symmetry code: (i) -x + 1, -y + 2, -z + 1.]

Fig. 15. A perspective view of (IIId), showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. Dashed lines indicate hydrogen bonds.

Fig. 16. A partial packing diagram for (IIId). Hydrogen bonds are shown as dashed lines. [Symmetry code: (i) -x + 2, - y + 1, -z.]
(I) 5-Propyl-2-thiouracil top
Crystal data top
C7H10N2OSZ = 4
Mr = 170.23F(000) = 360
Triclinic, P1Dx = 1.332 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.6637 (10) ÅCell parameters from 796 reflections
b = 10.3098 (13) Åθ = 4.8–25.8°
c = 10.7255 (13) ŵ = 0.33 mm1
α = 76.253 (10)°T = 173 K
β = 71.401 (9)°Plate, colourless
γ = 70.983 (9)°0.30 × 0.22 × 0.10 mm
V = 848.81 (18) Å3
Data collection top
Stoe IPDS II two-circle
diffractometer
3163 independent reflections
Radiation source: Genix 3D IµS microfocus X-ray source2609 reflections with I > 2σ(I)
Genix 3D multilayer optics monochromatorRint = 0.062
ω scansθmax = 25.6°, θmin = 3.7°
Absorption correction: multi-scan
(X-AREA; Stoe & Cie, 2001)
h = 1010
Tmin = 0.909, Tmax = 0.968k = 1012
6626 measured reflectionsl = 1312
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.105H atoms treated by a mixture of independent and constrained refinement
S = 1.00 w = 1/[σ2(Fo2) + (0.0665P)2]
where P = (Fo2 + 2Fc2)/3
3163 reflections(Δ/σ)max < 0.001
217 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = 0.27 e Å3
Crystal data top
C7H10N2OSγ = 70.983 (9)°
Mr = 170.23V = 848.81 (18) Å3
Triclinic, P1Z = 4
a = 8.6637 (10) ÅMo Kα radiation
b = 10.3098 (13) ŵ = 0.33 mm1
c = 10.7255 (13) ÅT = 173 K
α = 76.253 (10)°0.30 × 0.22 × 0.10 mm
β = 71.401 (9)°
Data collection top
Stoe IPDS II two-circle
diffractometer
3163 independent reflections
Absorption correction: multi-scan
(X-AREA; Stoe & Cie, 2001)
2609 reflections with I > 2σ(I)
Tmin = 0.909, Tmax = 0.968Rint = 0.062
6626 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0400 restraints
wR(F2) = 0.105H atoms treated by a mixture of independent and constrained refinement
S = 1.00Δρmax = 0.28 e Å3
3163 reflectionsΔρmin = 0.27 e Å3
217 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N1A0.3051 (2)0.45551 (17)0.82058 (16)0.0235 (3)
H1A0.319 (3)0.437 (3)0.742 (3)0.037 (7)*
C2A0.2239 (2)0.3828 (2)0.92877 (18)0.0212 (4)
S21A0.16424 (7)0.24586 (5)0.92301 (5)0.02809 (16)
N3A0.19600 (19)0.42747 (17)1.04530 (15)0.0207 (3)
H3A0.140 (3)0.388 (3)1.116 (3)0.039 (7)*
C4A0.2502 (2)0.53309 (19)1.06252 (18)0.0200 (4)
O41A0.22742 (17)0.55611 (15)1.17572 (13)0.0256 (3)
C5A0.3350 (2)0.60788 (19)0.94146 (18)0.0205 (4)
C6A0.3576 (2)0.5649 (2)0.82643 (19)0.0228 (4)
H6A0.41240.61250.74580.027*
C7A0.3900 (2)0.7288 (2)0.94915 (19)0.0247 (4)
H7A10.48380.74220.86980.030*
H7A20.43370.70741.02860.030*
C8A0.2484 (3)0.8625 (2)0.9569 (2)0.0315 (5)
H8A10.15360.84831.03510.038*
H8A20.28980.93560.97050.038*
C9A0.1833 (3)0.9120 (2)0.8338 (3)0.0382 (5)
H9A10.27630.92680.75590.057*
H9A20.09400.99940.84400.057*
H9A30.13740.84200.82180.057*
N1B0.1119 (2)0.28846 (18)0.62556 (16)0.0237 (4)
H1B0.142 (3)0.278 (3)0.698 (3)0.035 (7)*
C2B0.1926 (2)0.3567 (2)0.51504 (18)0.0209 (4)
S21B0.34459 (6)0.42710 (5)0.51087 (5)0.02622 (15)
N3B0.1442 (2)0.36483 (18)0.40380 (15)0.0223 (3)
H3B0.185 (3)0.416 (3)0.330 (3)0.035 (6)*
C4B0.0271 (2)0.3032 (2)0.39524 (19)0.0233 (4)
O41B0.00085 (18)0.31258 (16)0.28713 (13)0.0301 (3)
C5B0.0556 (2)0.2313 (2)0.51874 (19)0.0225 (4)
C6B0.0116 (2)0.2296 (2)0.62874 (19)0.0247 (4)
H6B0.06760.18640.71160.030*
C7B0.1881 (2)0.1669 (2)0.5174 (2)0.0284 (4)
H7B10.13540.09850.45460.034*
H7B20.27770.24040.48290.034*
C8B0.2703 (3)0.0952 (3)0.6508 (2)0.0406 (6)
H8B10.32840.16360.71340.049*
H8B20.18180.02270.68740.049*
C9B0.3979 (3)0.0289 (3)0.6388 (3)0.0535 (7)
H9B10.48660.10070.60380.080*
H9B20.44890.01630.72670.080*
H9B30.34020.04020.57830.080*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N1A0.0308 (9)0.0260 (9)0.0152 (8)0.0110 (7)0.0049 (6)0.0030 (6)
C2A0.0207 (8)0.0228 (9)0.0196 (9)0.0042 (7)0.0075 (7)0.0019 (7)
S21A0.0417 (3)0.0269 (3)0.0228 (3)0.0177 (2)0.0114 (2)0.00111 (19)
N3A0.0240 (8)0.0231 (8)0.0161 (8)0.0095 (7)0.0051 (6)0.0007 (6)
C4A0.0203 (8)0.0196 (9)0.0194 (9)0.0045 (7)0.0067 (7)0.0009 (7)
O41A0.0341 (7)0.0284 (7)0.0172 (7)0.0116 (6)0.0068 (5)0.0044 (5)
C5A0.0197 (8)0.0197 (9)0.0205 (9)0.0049 (7)0.0059 (7)0.0000 (7)
C6A0.0245 (9)0.0233 (10)0.0198 (9)0.0084 (8)0.0057 (7)0.0008 (7)
C7A0.0277 (9)0.0248 (10)0.0241 (10)0.0115 (8)0.0085 (8)0.0002 (8)
C8A0.0362 (11)0.0255 (11)0.0350 (11)0.0095 (9)0.0103 (9)0.0055 (9)
C9A0.0399 (12)0.0281 (11)0.0471 (14)0.0098 (9)0.0193 (10)0.0051 (10)
N1B0.0279 (8)0.0298 (9)0.0171 (8)0.0124 (7)0.0079 (6)0.0014 (7)
C2B0.0218 (8)0.0220 (9)0.0187 (9)0.0049 (7)0.0047 (7)0.0051 (7)
S21B0.0286 (3)0.0364 (3)0.0193 (2)0.0175 (2)0.00474 (18)0.00463 (19)
N3B0.0256 (8)0.0282 (9)0.0154 (8)0.0123 (7)0.0048 (6)0.0017 (7)
C4B0.0258 (9)0.0262 (10)0.0197 (9)0.0093 (8)0.0059 (7)0.0034 (7)
O41B0.0345 (7)0.0442 (9)0.0185 (7)0.0213 (7)0.0079 (6)0.0012 (6)
C5B0.0223 (9)0.0236 (9)0.0222 (9)0.0070 (8)0.0063 (7)0.0027 (7)
C6B0.0274 (9)0.0260 (10)0.0217 (9)0.0107 (8)0.0064 (7)0.0006 (8)
C7B0.0278 (10)0.0310 (11)0.0302 (11)0.0137 (9)0.0084 (8)0.0026 (9)
C8B0.0373 (12)0.05 (14)0.0379 (12)0.0257 (11)0.0074 (10)0.0032 (11)
C9B0.0435 (14)0.0550 (16)0.0675 (18)0.0324 (13)0.0129 (13)0.0050 (14)
Geometric parameters (Å, º) top
N1A—C2A1.347 (2)N1B—C2B1.336 (2)
N1A—C6A1.367 (2)N1B—C6B1.380 (2)
N1A—H1A0.87 (3)N1B—H1B0.87 (3)
C2A—N3A1.357 (2)C2B—N3B1.362 (2)
C2A—S21A1.6738 (19)C2B—S21B1.6827 (18)
N3A—C4A1.387 (2)N3B—C4B1.396 (2)
N3A—H3A0.85 (3)N3B—H3B0.88 (3)
C4A—O41A1.234 (2)C4B—O41B1.227 (2)
C4A—C5A1.451 (2)C4B—C5B1.446 (3)
C5A—C6A1.344 (3)C5B—C6B1.346 (3)
C5A—C7A1.500 (2)C5B—C7B1.507 (2)
C6A—H6A0.9500C6B—H6B0.9500
C7A—C8A1.516 (3)C7B—C8B1.513 (3)
C7A—H7A10.9900C7B—H7B10.9900
C7A—H7A20.9900C7B—H7B20.9900
C8A—C9A1.513 (3)C8B—C9B1.527 (3)
C8A—H8A10.9900C8B—H8B10.9900
C8A—H8A20.9900C8B—H8B20.9900
C9A—H9A10.9800C9B—H9B10.9800
C9A—H9A20.9800C9B—H9B20.9800
C9A—H9A30.9800C9B—H9B30.9800
C2A—N1A—C6A123.21 (17)C2B—N1B—C6B123.23 (17)
C2A—N1A—H1A119.4 (17)C2B—N1B—H1B118.0 (17)
C6A—N1A—H1A117.2 (17)C6B—N1B—H1B118.7 (17)
N1A—C2A—N3A114.69 (16)N1B—C2B—N3B115.11 (16)
N1A—C2A—S21A123.52 (14)N1B—C2B—S21B123.23 (14)
N3A—C2A—S21A121.78 (14)N3B—C2B—S21B121.66 (14)
C2A—N3A—C4A126.52 (16)C2B—N3B—C4B126.00 (16)
C2A—N3A—H3A118.1 (18)C2B—N3B—H3B118.9 (16)
C4A—N3A—H3A115.4 (18)C4B—N3B—H3B115.0 (16)
O41A—C4A—N3A119.80 (16)O41B—C4B—N3B119.57 (17)
O41A—C4A—C5A124.56 (16)O41B—C4B—C5B124.65 (17)
N3A—C4A—C5A115.62 (16)N3B—C4B—C5B115.79 (16)
C6A—C5A—C4A117.07 (16)C6B—C5B—C4B117.29 (16)
C6A—C5A—C7A123.31 (16)C6B—C5B—C7B124.17 (17)
C4A—C5A—C7A119.61 (16)C4B—C5B—C7B118.51 (17)
C5A—C6A—N1A122.76 (17)C5B—C6B—N1B122.43 (17)
C5A—C6A—H6A118.6C5B—C6B—H6B118.8
N1A—C6A—H6A118.6N1B—C6B—H6B118.8
C5A—C7A—C8A113.00 (16)C5B—C7B—C8B115.32 (17)
C5A—C7A—H7A1109.0C5B—C7B—H7B1108.4
C8A—C7A—H7A1109.0C8B—C7B—H7B1108.4
C5A—C7A—H7A2109.0C5B—C7B—H7B2108.4
C8A—C7A—H7A2109.0C8B—C7B—H7B2108.4
H7A1—C7A—H7A2107.8H7B1—C7B—H7B2107.5
C9A—C8A—C7A113.33 (18)C7B—C8B—C9B111.6 (2)
C9A—C8A—H8A1108.9C7B—C8B—H8B1109.3
C7A—C8A—H8A1108.9C9B—C8B—H8B1109.3
C9A—C8A—H8A2108.9C7B—C8B—H8B2109.3
C7A—C8A—H8A2108.9C9B—C8B—H8B2109.3
H8A1—C8A—H8A2107.7H8B1—C8B—H8B2108.0
C8A—C9A—H9A1109.5C8B—C9B—H9B1109.5
C8A—C9A—H9A2109.5C8B—C9B—H9B2109.5
H9A1—C9A—H9A2109.5H9B1—C9B—H9B2109.5
C8A—C9A—H9A3109.5C8B—C9B—H9B3109.5
H9A1—C9A—H9A3109.5H9B1—C9B—H9B3109.5
H9A2—C9A—H9A3109.5H9B2—C9B—H9B3109.5
C6A—N1A—C2A—N3A0.7 (3)C6B—N1B—C2B—N3B0.1 (3)
C6A—N1A—C2A—S21A178.14 (15)C6B—N1B—C2B—S21B179.39 (16)
N1A—C2A—N3A—C4A3.6 (3)N1B—C2B—N3B—C4B3.5 (3)
S21A—C2A—N3A—C4A175.22 (14)S21B—C2B—N3B—C4B176.00 (15)
C2A—N3A—C4A—O41A174.34 (18)C2B—N3B—C4B—O41B176.28 (19)
C2A—N3A—C4A—C5A4.4 (3)C2B—N3B—C4B—C5B3.7 (3)
O41A—C4A—C5A—C6A176.48 (18)O41B—C4B—C5B—C6B179.5 (2)
N3A—C4A—C5A—C6A2.2 (2)N3B—C4B—C5B—C6B0.5 (3)
O41A—C4A—C5A—C7A4.6 (3)O41B—C4B—C5B—C7B2.2 (3)
N3A—C4A—C5A—C7A176.74 (16)N3B—C4B—C5B—C7B177.79 (17)
C4A—C5A—C6A—N1A0.3 (3)C4B—C5B—C6B—N1B2.6 (3)
C7A—C5A—C6A—N1A179.20 (17)C7B—C5B—C6B—N1B179.24 (19)
C2A—N1A—C6A—C5A1.2 (3)C2B—N1B—C6B—C5B2.9 (3)
C6A—C5A—C7A—C8A96.4 (2)C6B—C5B—C7B—C8B1.1 (3)
C4A—C5A—C7A—C8A82.4 (2)C4B—C5B—C7B—C8B179.3 (2)
C5A—C7A—C8A—C9A64.1 (2)C5B—C7B—C8B—C9B178.0 (2)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1A—H1A···S21B0.87 (3)2.44 (3)3.3030 (18)170 (2)
N3A—H3A···O41Bi0.85 (3)1.99 (3)2.835 (2)175 (3)
N1B—H1B···S21A0.87 (3)2.42 (3)3.2715 (18)168 (2)
N3B—H3B···O41Aii0.88 (3)1.94 (3)2.811 (2)168 (2)
Symmetry codes: (i) x, y, z+1; (ii) x, y, z1.
(II) 5-Methoxy-2-thiouracil top
Crystal data top
C5H6N2O2SF(000) = 328
Mr = 158.18Dx = 1.604 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5816 reflections
a = 4.3141 (6) Åθ = 4.3–26.0°
b = 16.9101 (18) ŵ = 0.43 mm1
c = 8.9965 (12) ÅT = 173 K
β = 93.593 (10)°Plate, colourless
V = 655.02 (14) Å30.32 × 0.11 × 0.06 mm
Z = 4
Data collection top
Stoe IPDS II two-circle
diffractometer
1228 independent reflections
Radiation source: Genix 3D IµS microfocus X-ray source1072 reflections with I > 2σ(I)
Genix 3D multilayer optics monochromatorRint = 0.077
ω scansθmax = 25.6°, θmin = 4.3°
Absorption correction: multi-scan
(X-AREA; Stoe & Cie, 2001)
h = 55
Tmin = 0.876, Tmax = 0.975k = 1920
5186 measured reflectionsl = 109
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.112H atoms treated by a mixture of independent and constrained refinement
S = 1.06 w = 1/[σ2(Fo2) + (0.061P)2 + 0.3198P]
where P = (Fo2 + 2Fc2)/3
1228 reflections(Δ/σ)max = 0.026
98 parametersΔρmax = 0.39 e Å3
2 restraintsΔρmin = 0.22 e Å3
Crystal data top
C5H6N2O2SV = 655.02 (14) Å3
Mr = 158.18Z = 4
Monoclinic, P21/cMo Kα radiation
a = 4.3141 (6) ŵ = 0.43 mm1
b = 16.9101 (18) ÅT = 173 K
c = 8.9965 (12) Å0.32 × 0.11 × 0.06 mm
β = 93.593 (10)°
Data collection top
Stoe IPDS II two-circle
diffractometer
1228 independent reflections
Absorption correction: multi-scan
(X-AREA; Stoe & Cie, 2001)
1072 reflections with I > 2σ(I)
Tmin = 0.876, Tmax = 0.975Rint = 0.077
5186 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0432 restraints
wR(F2) = 0.112H atoms treated by a mixture of independent and constrained refinement
S = 1.06Δρmax = 0.39 e Å3
1228 reflectionsΔρmin = 0.22 e Å3
98 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N1A0.7438 (4)0.69293 (11)0.6715 (2)0.0234 (4)
H1A0.873 (6)0.6937 (17)0.749 (3)0.028*
C2A0.6591 (5)0.62132 (13)0.6188 (3)0.0232 (5)
S21A0.81851 (13)0.53700 (3)0.68480 (7)0.0281 (2)
N3A0.4334 (4)0.62184 (11)0.5068 (2)0.0232 (4)
H3A0.379 (6)0.5762 (12)0.470 (3)0.028*
C4A0.2857 (5)0.68713 (13)0.4440 (3)0.0229 (5)
O41A0.0816 (4)0.68022 (10)0.34415 (19)0.0290 (4)
C5A0.3928 (5)0.76207 (14)0.5064 (3)0.0233 (5)
O51A0.2461 (4)0.82563 (9)0.44278 (19)0.0272 (4)
C52A0.3363 (7)0.90080 (15)0.5061 (3)0.0344 (6)
H52A0.29440.90150.61190.052*
H52B0.21740.94300.45400.052*
H52C0.55850.90930.49560.052*
C6A0.6145 (5)0.76281 (14)0.6169 (3)0.0240 (5)
H6A0.68420.81180.65840.029*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N1A0.0205 (10)0.0279 (10)0.0210 (10)0.0007 (7)0.0042 (8)0.0001 (7)
C2A0.0191 (11)0.0287 (12)0.0220 (12)0.0027 (8)0.0026 (9)0.0019 (9)
S21A0.0287 (3)0.0263 (3)0.0280 (4)0.0008 (2)0.0079 (2)0.0015 (2)
N3A0.0229 (10)0.0238 (10)0.0223 (10)0.0029 (7)0.0040 (7)0.0003 (7)
C4A0.0204 (11)0.0271 (11)0.0211 (12)0.0002 (8)0.0017 (9)0.0005 (9)
O41A0.0288 (9)0.0305 (9)0.0260 (9)0.0001 (7)0.0112 (7)0.0007 (7)
C5A0.0211 (11)0.0270 (12)0.0219 (11)0.0005 (8)0.0015 (9)0.0008 (9)
O51A0.0287 (9)0.0234 (8)0.0283 (9)0.0014 (6)0.0085 (7)0.0004 (7)
C52A0.0417 (15)0.0242 (12)0.0360 (15)0.0001 (10)0.0071 (12)0.0019 (10)
C6A0.0221 (11)0.0259 (11)0.0239 (11)0.0016 (8)0.0002 (9)0.0015 (9)
Geometric parameters (Å, º) top
N1A—C2A1.343 (3)C4A—C5A1.450 (3)
N1A—C6A1.384 (3)C5A—C6A1.336 (3)
N1A—H1A0.862 (18)C5A—O51A1.356 (3)
C2A—N3A1.357 (3)O51A—C52A1.437 (3)
C2A—S21A1.675 (2)C52A—H52A0.9800
N3A—C4A1.378 (3)C52A—H52B0.9800
N3A—H3A0.867 (17)C52A—H52C0.9800
C4A—O41A1.223 (3)C6A—H6A0.9500
C2A—N1A—C6A123.4 (2)C6A—C5A—C4A119.5 (2)
C2A—N1A—H1A116.5 (19)O51A—C5A—C4A113.59 (19)
C6A—N1A—H1A119.9 (19)C5A—O51A—C52A115.23 (18)
N1A—C2A—N3A115.0 (2)O51A—C52A—H52A109.5
N1A—C2A—S21A123.09 (18)O51A—C52A—H52B109.5
N3A—C2A—S21A121.87 (17)H52A—C52A—H52B109.5
C2A—N3A—C4A127.0 (2)O51A—C52A—H52C109.5
C2A—N3A—H3A116.4 (19)H52A—C52A—H52C109.5
C4A—N3A—H3A117 (2)H52B—C52A—H52C109.5
O41A—C4A—N3A121.2 (2)C5A—C6A—N1A120.7 (2)
O41A—C4A—C5A124.4 (2)C5A—C6A—H6A119.7
N3A—C4A—C5A114.4 (2)N1A—C6A—H6A119.7
C6A—C5A—O51A126.9 (2)
C6A—N1A—C2A—N3A0.2 (3)O41A—C4A—C5A—O51A0.4 (3)
C6A—N1A—C2A—S21A179.57 (17)N3A—C4A—C5A—O51A179.68 (19)
N1A—C2A—N3A—C4A0.3 (3)C6A—C5A—O51A—C52A2.1 (3)
S21A—C2A—N3A—C4A179.89 (18)C4A—C5A—O51A—C52A177.4 (2)
C2A—N3A—C4A—O41A179.1 (2)O51A—C5A—C6A—N1A179.8 (2)
C2A—N3A—C4A—C5A0.8 (3)C4A—C5A—C6A—N1A0.4 (3)
O41A—C4A—C5A—C6A179.1 (2)C2A—N1A—C6A—C5A0.2 (3)
N3A—C4A—C5A—C6A0.8 (3)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1A—H1A···O51Ai0.86 (2)2.32 (2)3.176 (3)170 (3)
N1A—H1A···O41Ai0.86 (2)2.45 (3)2.975 (3)120 (2)
N3A—H3A···S21Aii0.87 (2)2.49 (2)3.337 (2)167 (3)
Symmetry codes: (i) x+1, y+3/2, z+1/2; (ii) x+1, y+1, z+1.
(IIa) 5-Methoxy-2-thiouracil–dimethylacetamide (1/1) top
Crystal data top
C5H6N2O2S·C4H9NOF(000) = 520
Mr = 245.30Dx = 1.383 Mg m3
Monoclinic, P21/mMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybCell parameters from 6964 reflections
a = 13.225 (3) Åθ = 3.3–26.3°
b = 6.4726 (8) ŵ = 0.27 mm1
c = 13.867 (3) ÅT = 173 K
β = 97.170 (15)°Needle, colourless
V = 1177.7 (4) Å30.30 × 0.18 × 0.12 mm
Z = 4
Data collection top
Stoe IPDS II two-circle-
diffractometer
2470 independent reflections
Radiation source: Genix 3D IµS microfocus X-ray source1767 reflections with I > 2σ(I)
Genix 3D multilayer optics monochromatorRint = 0.116
ω scansθmax = 26.0°, θmin = 3.3°
Absorption correction: multi-scan
(X-AREA; Stoe & Cie, 2001)
h = 1616
Tmin = 0.923, Tmax = 0.968k = 67
9319 measured reflectionsl = 1616
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.077Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.190H atoms treated by a mixture of independent and constrained refinement
S = 1.12 w = 1/[σ2(Fo2) + (0.0805P)2 + 1.0888P]
where P = (Fo2 + 2Fc2)/3
2470 reflections(Δ/σ)max < 0.001
227 parametersΔρmax = 0.50 e Å3
260 restraintsΔρmin = 0.42 e Å3
Crystal data top
C5H6N2O2S·C4H9NOV = 1177.7 (4) Å3
Mr = 245.30Z = 4
Monoclinic, P21/mMo Kα radiation
a = 13.225 (3) ŵ = 0.27 mm1
b = 6.4726 (8) ÅT = 173 K
c = 13.867 (3) Å0.30 × 0.18 × 0.12 mm
β = 97.170 (15)°
Data collection top
Stoe IPDS II two-circle-
diffractometer
2470 independent reflections
Absorption correction: multi-scan
(X-AREA; Stoe & Cie, 2001)
1767 reflections with I > 2σ(I)
Tmin = 0.923, Tmax = 0.968Rint = 0.116
9319 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.077260 restraints
wR(F2) = 0.190H atoms treated by a mixture of independent and constrained refinement
S = 1.12Δρmax = 0.50 e Å3
2470 reflectionsΔρmin = 0.42 e Å3
227 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
N1A0.4575 (3)0.25000.4657 (3)0.0276 (12)
H1A0.521 (2)0.25000.457 (4)0.033*
C2A0.3837 (4)0.25000.3902 (4)0.0243 (12)
S21A0.40863 (10)0.25000.27431 (9)0.0307 (4)
N3A0.2870 (3)0.25000.4151 (3)0.0231 (10)
H3A0.238 (3)0.25000.367 (3)0.028*
C4A0.2582 (4)0.25000.5079 (4)0.0247 (12)
O41A0.1683 (3)0.25000.5203 (3)0.0336 (11)
C5A0.3443 (4)0.25000.5847 (3)0.0250 (12)
O51A0.3163 (3)0.25000.6754 (3)0.0322 (10)
C52A0.3996 (5)0.25000.7525 (4)0.0351 (15)
H5AA0.37280.25000.81530.053*
H5AB0.44130.37360.74750.053*0.50
H5AC0.44130.12640.74750.053*0.50
C6A0.4388 (4)0.25000.5616 (4)0.0281 (13)
H6A0.49460.25000.61190.034*
N1B0.0340 (3)0.25000.0507 (3)0.0271 (11)
H1B0.0328 (19)0.25000.055 (4)0.033*
C2B0.1056 (4)0.25000.1274 (4)0.0245 (12)
S21B0.07768 (11)0.25000.24316 (10)0.0317 (4)
N3B0.2032 (4)0.25000.1060 (3)0.0271 (11)
H3B0.252 (3)0.25000.155 (3)0.033*
C4B0.2344 (4)0.25000.0135 (4)0.0262 (13)
O41B0.3242 (3)0.25000.0038 (3)0.0348 (11)
C5B0.1509 (4)0.25000.0646 (4)0.0262 (12)
O51B0.1820 (3)0.25000.1534 (2)0.0289 (10)
C52B0.1029 (5)0.25000.2340 (4)0.0346 (15)
H5BA0.13340.25000.29490.052*
H5BB0.06060.37360.23120.052*0.50
H5BC0.06060.12640.23120.052*0.50
C6B0.0548 (4)0.25000.0441 (4)0.0272 (13)
H6B0.00020.25000.09560.033*
C1X0.7726 (6)0.25000.6700 (4)0.0525 (19)
H1XA0.84680.25000.68660.079*0.668 (12)
H1XB0.74400.12640.69710.079*0.334 (6)
H1XC0.74400.37360.69710.079*0.334 (6)
H1XD0.82680.25000.72500.079*0.332 (12)
H1XE0.73030.12640.67290.079*0.166 (6)
H1XF0.73030.37360.67290.079*0.166 (6)
O21X0.6582 (3)0.25000.5152 (3)0.0462 (13)
C31X0.8023 (8)0.25000.4064 (4)0.079 (3)
H3XA0.86520.25000.37580.119*0.668 (12)
H3XB0.76230.37360.38620.119*0.334 (6)
H3XC0.76230.12640.38620.119*0.334 (6)
H3XD0.87630.25000.42440.119*0.332 (12)
H3XE0.78220.37360.36790.119*0.166 (6)
H3XF0.78220.12640.36790.119*0.166 (6)
C32X0.9290 (4)0.25000.5650 (5)0.053 (2)
H4XA0.97880.25000.51830.079*0.668 (12)
H4XB0.93870.12640.60590.079*0.334 (6)
H4XC0.93870.37360.60590.079*0.334 (6)
H4XD0.96970.25000.62920.079*0.332 (12)
H4XE0.94500.37360.52900.079*0.166 (6)
H4XF0.94500.12640.52900.079*0.166 (6)
C1Y0.2416 (5)0.25000.1663 (4)0.0428 (16)
H1YA0.31130.25000.18340.064*0.759 (11)
H1YB0.20570.37360.19320.064*0.380 (6)
H1YC0.20570.12640.19320.064*0.380 (6)
H1YD0.28070.25000.22190.064*0.241 (11)
H1YE0.19860.37360.16880.064*0.120 (6)
H1YF0.19860.12640.16880.064*0.120 (6)
O21Y0.1696 (3)0.25000.0108 (3)0.0442 (13)
C31Y0.3446 (5)0.25000.0982 (4)0.0478 (18)
H3YA0.41670.25000.12530.072*0.759 (11)
H3YB0.31140.12640.12020.072*0.380 (6)
H3YC0.31140.37360.12020.072*0.380 (6)
H3YD0.41390.25000.08000.072*0.241 (11)
H3YE0.33470.12640.13670.072*0.120 (6)
H3YF0.33470.37360.13670.072*0.120 (6)
C32Y0.4266 (4)0.25000.0601 (5)0.054 (2)
H4YA0.48800.25000.01260.081*0.759 (11)
H4YB0.42610.37360.10090.081*0.380 (6)
H4YC0.42610.12640.10090.081*0.380 (6)
H4YD0.45170.25000.12360.081*0.241 (11)
H4YE0.45130.12640.02370.081*0.120 (6)
H4YF0.45130.37360.02370.081*0.120 (6)
C2X0.7460 (5)0.25000.5592 (5)0.029 (2)0.668 (12)
N3X0.8280 (5)0.25000.5137 (5)0.034 (2)0.668 (12)
C2X'0.7488 (6)0.25000.4993 (7)0.030 (4)0.332 (12)
N3X'0.8189 (6)0.25000.5769 (6)0.030 (4)0.332 (12)
C2Y0.2447 (5)0.25000.0572 (4)0.0291 (19)0.759 (11)
N3Y0.3362 (4)0.25000.0089 (4)0.0337 (19)0.759 (11)
C2Y'0.2670 (7)0.25000.0058 (7)0.031 (5)0.241 (11)
N3Y'0.3133 (7)0.25000.0739 (7)0.034 (5)0.241 (11)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N1A0.018 (2)0.042 (4)0.023 (2)0.0000.0026 (18)0.000
C2A0.024 (3)0.026 (3)0.022 (2)0.0000.000 (2)0.000
S21A0.0232 (7)0.0454 (11)0.0232 (6)0.0000.0021 (5)0.000
N3A0.016 (2)0.029 (3)0.024 (2)0.0000.0014 (16)0.000
C4A0.023 (3)0.023 (3)0.029 (3)0.0000.007 (2)0.000
O41A0.019 (2)0.047 (3)0.035 (2)0.0000.0035 (16)0.000
C5A0.026 (3)0.029 (4)0.020 (2)0.0000.001 (2)0.000
O51A0.024 (2)0.049 (3)0.0233 (17)0.0000.0038 (15)0.000
C52A0.031 (3)0.052 (5)0.021 (2)0.0000.003 (2)0.000
C6A0.026 (3)0.030 (4)0.026 (3)0.0000.002 (2)0.000
N1B0.016 (2)0.033 (3)0.032 (2)0.0000.0048 (19)0.000
C2B0.022 (3)0.020 (3)0.030 (3)0.0000.002 (2)0.000
S21B0.0230 (7)0.0439 (11)0.0277 (7)0.0000.0014 (5)0.000
N3B0.023 (2)0.031 (3)0.027 (2)0.0000.0011 (18)0.000
C4B0.023 (3)0.026 (4)0.029 (3)0.0000.002 (2)0.000
O41B0.021 (2)0.042 (3)0.041 (2)0.0000.0005 (17)0.000
C5B0.025 (3)0.025 (3)0.028 (3)0.0000.003 (2)0.000
O51B0.0225 (19)0.042 (3)0.0217 (17)0.0000.0019 (14)0.000
C52B0.029 (3)0.046 (5)0.027 (3)0.0000.002 (2)0.000
C6B0.020 (3)0.032 (4)0.028 (3)0.0000.004 (2)0.000
C1X0.088 (6)0.036 (4)0.034 (3)0.0000.012 (3)0.000
O21X0.022 (2)0.052 (4)0.061 (3)0.0000.0101 (19)0.000
C31X0.160 (9)0.050 (6)0.030 (3)0.0000.020 (4)0.000
C32X0.025 (3)0.070 (6)0.062 (4)0.0000.002 (3)0.000
C1Y0.059 (4)0.032 (4)0.035 (3)0.0000.002 (3)0.000
O21Y0.020 (2)0.058 (4)0.055 (3)0.0000.0060 (18)0.000
C31Y0.046 (4)0.057 (5)0.035 (3)0.0000.015 (3)0.000
C32Y0.028 (3)0.070 (6)0.067 (4)0.0000.016 (3)0.000
C2X0.021 (4)0.022 (5)0.044 (5)0.0000.004 (4)0.000
N3X0.025 (4)0.039 (5)0.036 (4)0.0000.003 (3)0.000
C2X'0.030 (6)0.022 (10)0.035 (6)0.0000.005 (6)0.000
N3X'0.031 (6)0.030 (9)0.028 (6)0.0000.006 (5)0.000
C2Y0.025 (4)0.029 (5)0.032 (4)0.0000.002 (3)0.000
N3Y0.018 (3)0.038 (5)0.045 (4)0.0000.003 (3)0.000
C2Y'0.022 (7)0.036 (13)0.034 (7)0.0000.001 (6)0.000
N3Y'0.025 (7)0.041 (12)0.037 (7)0.0000.006 (6)0.000
Geometric parameters (Å, º) top
N1A—C2A1.339 (7)C31X—H3XA0.9800
N1A—C6A1.383 (7)C31X—H3XB0.9800
N1A—H1A0.86 (2)C31X—H3XC0.9800
C2A—N3A1.366 (7)C31X—H3XD0.9800
C2A—S21A1.680 (5)C31X—H3XE0.9800
N3A—C4A1.387 (6)C31X—H3XF0.9800
N3A—H3A0.87 (2)C32X—N3X1.433 (7)
C4A—O41A1.222 (6)C32X—N3X'1.486 (8)
C4A—C5A1.458 (8)C32X—H4XA0.9800
C5A—C6A1.329 (8)C32X—H4XB0.9800
C5A—O51A1.355 (6)C32X—H4XC0.9800
O51A—C52A1.437 (7)C32X—H4XD0.9801
C52A—H5AA0.9800C32X—H4XE0.9800
C52A—H5AB0.9800C32X—H4XF0.9800
C52A—H5AC0.9800C1Y—N3Y'1.497 (9)
C6A—H6A0.9500C1Y—C2Y1.508 (7)
N1B—C2B1.334 (7)C1Y—H1YA0.9800
N1B—C6B1.376 (7)C1Y—H1YB0.9800
N1B—H1B0.89 (2)C1Y—H1YC0.9800
C2B—N3B1.360 (7)C1Y—H1YD0.9801
C2B—S21B1.691 (5)C1Y—H1YE0.9800
N3B—C4B1.396 (7)C1Y—H1YF0.9800
N3B—H3B0.87 (2)O21Y—C2Y1.249 (6)
C4B—O41B1.212 (6)O21Y—C2Y'1.280 (8)
C4B—C5B1.447 (8)C31Y—N3Y1.476 (7)
C5B—C6B1.336 (7)C31Y—C2Y'1.538 (8)
C5B—O51B1.346 (6)C31Y—H3YA0.9800
O51B—C52B1.433 (7)C31Y—H3YB0.9800
C52B—H5BA0.9800C31Y—H3YC0.9800
C52B—H5BB0.9800C31Y—H3YD0.9799
C52B—H5BC0.9800C31Y—H3YE0.9800
C6B—H6B0.9500C31Y—H3YF0.9800
C1X—N3X'1.495 (8)C32Y—N3Y1.463 (6)
C1X—C2X1.532 (7)C32Y—N3Y'1.486 (8)
C1X—H1XA0.9800C32Y—H4YA0.9800
C1X—H1XB0.9800C32Y—H4YB0.9800
C1X—H1XC0.9800C32Y—H4YC0.9800
C1X—H1XD0.9800C32Y—H4YD0.9800
C1X—H1XE0.9799C32Y—H4YE0.9800
C1X—H1XF0.9799C32Y—H4YF0.9800
O21X—C2X1.243 (7)C2X—N3X1.321 (7)
O21X—C2X'1.246 (8)C2X'—N3X'1.329 (9)
C31X—N3X1.485 (7)C2Y—N3Y1.309 (7)
C31X—C2X'1.546 (8)C2Y'—N3Y'1.328 (9)
C2A—N1A—C6A123.5 (5)H3XE—C31X—H3XF109.5
C2A—N1A—H1A121 (4)N3X—C32X—H4XA109.5
C6A—N1A—H1A115 (4)N3X—C32X—H4XB109.5
N1A—C2A—N3A114.6 (4)H4XA—C32X—H4XB109.5
N1A—C2A—S21A122.5 (4)N3X—C32X—H4XC109.5
N3A—C2A—S21A122.9 (4)H4XA—C32X—H4XC109.5
C2A—N3A—C4A127.5 (5)H4XB—C32X—H4XC109.5
C2A—N3A—H3A116 (4)N3X'—C32X—H4XD109.5
C4A—N3A—H3A116 (4)N3X'—C32X—H4XE109.5
O41A—C4A—N3A121.0 (5)H4XD—C32X—H4XE109.5
O41A—C4A—C5A125.6 (5)N3X'—C32X—H4XF109.5
N3A—C4A—C5A113.5 (4)H4XD—C32X—H4XF109.5
C6A—C5A—O51A126.7 (5)H4XE—C32X—H4XF109.5
C6A—C5A—C4A119.8 (5)C2Y—C1Y—H1YA109.5
O51A—C5A—C4A113.5 (4)C2Y—C1Y—H1YB109.5
C5A—O51A—C52A114.8 (4)H1YA—C1Y—H1YB109.5
O51A—C52A—H5AA109.5C2Y—C1Y—H1YC109.5
O51A—C52A—H5AB109.5H1YA—C1Y—H1YC109.5
H5AA—C52A—H5AB109.5H1YB—C1Y—H1YC109.5
O51A—C52A—H5AC109.5N3Y'—C1Y—H1YD109.5
H5AA—C52A—H5AC109.5N3Y'—C1Y—H1YE109.5
H5AB—C52A—H5AC109.5H1YD—C1Y—H1YE109.5
C5A—C6A—N1A121.1 (5)N3Y'—C1Y—H1YF109.5
C5A—C6A—H6A119.4H1YD—C1Y—H1YF109.5
N1A—C6A—H6A119.4H1YE—C1Y—H1YF109.5
C2B—N1B—C6B123.8 (5)N3Y—C31Y—H3YA109.5
C2B—N1B—H1B124 (4)N3Y—C31Y—H3YB109.5
C6B—N1B—H1B112 (4)H3YA—C31Y—H3YB109.5
N1B—C2B—N3B115.1 (4)N3Y—C31Y—H3YC109.5
N1B—C2B—S21B122.7 (4)H3YA—C31Y—H3YC109.5
N3B—C2B—S21B122.2 (4)H3YB—C31Y—H3YC109.5
C2B—N3B—C4B126.7 (5)C2Y'—C31Y—H3YD109.5
C2B—N3B—H3B117 (4)C2Y'—C31Y—H3YE109.5
C4B—N3B—H3B116 (4)H3YD—C31Y—H3YE109.5
O41B—C4B—N3B120.5 (5)C2Y'—C31Y—H3YF109.5
O41B—C4B—C5B125.7 (5)H3YD—C31Y—H3YF109.5
N3B—C4B—C5B113.7 (5)H3YE—C31Y—H3YF109.5
C6B—C5B—O51B127.0 (5)N3Y—C32Y—H4YA109.5
C6B—C5B—C4B119.9 (5)N3Y—C32Y—H4YB109.5
O51B—C5B—C4B113.1 (5)H4YA—C32Y—H4YB109.5
C5B—O51B—C52B115.9 (4)N3Y—C32Y—H4YC109.5
O51B—C52B—H5BA109.5H4YA—C32Y—H4YC109.5
O51B—C52B—H5BB109.5H4YB—C32Y—H4YC109.5
H5BA—C52B—H5BB109.5N3Y'—C32Y—H4YD109.5
O51B—C52B—H5BC109.5N3Y'—C32Y—H4YE109.5
H5BA—C52B—H5BC109.5H4YD—C32Y—H4YE109.5
H5BB—C52B—H5BC109.5N3Y'—C32Y—H4YF109.5
C5B—C6B—N1B120.8 (5)H4YD—C32Y—H4YF109.5
C5B—C6B—H6B119.6H4YE—C32Y—H4YF109.5
N1B—C6B—H6B119.6O21X—C2X—N3X122.6 (6)
C2X—C1X—H1XA109.5O21X—C2X—C1X125.1 (6)
C2X—C1X—H1XB109.5N3X—C2X—C1X112.3 (6)
H1XA—C1X—H1XB109.5C2X—N3X—C32X122.2 (6)
C2X—C1X—H1XC109.5C2X—N3X—C31X112.3 (6)
H1XA—C1X—H1XC109.5C32X—N3X—C31X125.5 (6)
H1XB—C1X—H1XC109.5O21X—C2X'—N3X'116.5 (8)
N3X'—C1X—H1XD109.5O21X—C2X'—C31X134.2 (9)
N3X'—C1X—H1XE109.5N3X'—C2X'—C31X109.3 (7)
H1XD—C1X—H1XE109.5C2X'—N3X'—C32X120.2 (7)
N3X'—C1X—H1XF109.5C2X'—N3X'—C1X112.3 (7)
H1XD—C1X—H1XF109.5C32X—N3X'—C1X127.5 (7)
H1XE—C1X—H1XF109.5O21Y—C2Y—N3Y118.7 (5)
N3X—C31X—H3XA109.5O21Y—C2Y—C1Y126.4 (5)
N3X—C31X—H3XB109.5N3Y—C2Y—C1Y114.9 (5)
H3XA—C31X—H3XB109.5C2Y—N3Y—C32Y120.7 (6)
N3X—C31X—H3XC109.5C2Y—N3Y—C31Y117.6 (5)
H3XA—C31X—H3XC109.5C32Y—N3Y—C31Y121.6 (5)
H3XB—C31X—H3XC109.5O21Y—C2Y'—N3Y'114.1 (8)
C2X'—C31X—H3XD109.5O21Y—C2Y'—C31Y134.5 (9)
C2X'—C31X—H3XE109.5N3Y'—C2Y'—C31Y111.3 (7)
H3XD—C31X—H3XE109.5C2Y'—N3Y'—C32Y117.0 (7)
C2X'—C31X—H3XF109.5C2Y'—N3Y'—C1Y113.8 (7)
H3XD—C31X—H3XF109.5C32Y—N3Y'—C1Y129.1 (8)
C6A—N1A—C2A—N3A0.000 (1)N3X'—C32X—N3X—C31X180.000 (2)
C6A—N1A—C2A—S21A180.0C2X'—C31X—N3X—C2X0.000 (2)
N1A—C2A—N3A—C4A0.000 (1)C2X'—C31X—N3X—C32X180.000 (2)
S21A—C2A—N3A—C4A180.0C2X—O21X—C2X'—N3X'0.000 (3)
C2A—N3A—C4A—O41A180.0C2X—O21X—C2X'—C31X180.000 (4)
C2A—N3A—C4A—C5A0.000 (1)N3X—C31X—C2X'—O21X180.000 (3)
O41A—C4A—C5A—C6A180.000 (1)N3X—C31X—C2X'—N3X'0.000 (3)
N3A—C4A—C5A—C6A0.000 (1)O21X—C2X'—N3X'—C32X180.000 (2)
O41A—C4A—C5A—O51A0.000 (1)C31X—C2X'—N3X'—C32X0.000 (1)
N3A—C4A—C5A—O51A180.0O21X—C2X'—N3X'—C1X0.000 (2)
C6A—C5A—O51A—C52A0.000 (2)C31X—C2X'—N3X'—C1X180.000 (1)
C4A—C5A—O51A—C52A180.000 (1)N3X—C32X—N3X'—C2X'0.000 (2)
O51A—C5A—C6A—N1A180.000 (1)N3X—C32X—N3X'—C1X180.000 (3)
C4A—C5A—C6A—N1A0.000 (2)C2X—C1X—N3X'—C2X'0.000 (3)
C2A—N1A—C6A—C5A0.000 (1)C2X—C1X—N3X'—C32X180.000 (3)
C6B—N1B—C2B—N3B0.0C2Y'—O21Y—C2Y—N3Y0.0
C6B—N1B—C2B—S21B180.0C2Y'—O21Y—C2Y—C1Y180.0
N1B—C2B—N3B—C4B0.0N3Y'—C1Y—C2Y—O21Y180.0
S21B—C2B—N3B—C4B180.0N3Y'—C1Y—C2Y—N3Y0.0
C2B—N3B—C4B—O41B180.0O21Y—C2Y—N3Y—C32Y180.0
C2B—N3B—C4B—C5B0.0C1Y—C2Y—N3Y—C32Y0.0
O41B—C4B—C5B—C6B180.0O21Y—C2Y—N3Y—C31Y0.0
N3B—C4B—C5B—C6B0.0C1Y—C2Y—N3Y—C31Y180.0
O41B—C4B—C5B—O51B0.0N3Y'—C32Y—N3Y—C2Y0.0
N3B—C4B—C5B—O51B180.0N3Y'—C32Y—N3Y—C31Y180.0
C6B—C5B—O51B—C52B0.0C2Y'—C31Y—N3Y—C2Y0.0
C4B—C5B—O51B—C52B180.0C2Y'—C31Y—N3Y—C32Y180.0
O51B—C5B—C6B—N1B180.0C2Y—O21Y—C2Y'—N3Y'0.0
C4B—C5B—C6B—N1B0.0C2Y—O21Y—C2Y'—C31Y180.0
C2B—N1B—C6B—C5B0.0N3Y—C31Y—C2Y'—O21Y180.0
C2X'—O21X—C2X—N3X0.000 (2)N3Y—C31Y—C2Y'—N3Y'0.0
C2X'—O21X—C2X—C1X180.000 (2)O21Y—C2Y'—N3Y'—C32Y180.0
N3X'—C1X—C2X—O21X180.000 (3)C31Y—C2Y'—N3Y'—C32Y0.0
N3X'—C1X—C2X—N3X0.000 (2)O21Y—C2Y'—N3Y'—C1Y0.0
O21X—C2X—N3X—C32X180.000 (2)C31Y—C2Y'—N3Y'—C1Y180.0
C1X—C2X—N3X—C32X0.000 (2)N3Y—C32Y—N3Y'—C2Y'0.0
O21X—C2X—N3X—C31X0.000 (2)N3Y—C32Y—N3Y'—C1Y180.0
C1X—C2X—N3X—C31X180.000 (1)C2Y—C1Y—N3Y'—C2Y'0.0
N3X'—C32X—N3X—C2X0.000 (2)C2Y—C1Y—N3Y'—C32Y180.0
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1A—H1A···O21X0.86 (2)1.89 (4)2.658 (6)147 (6)
N3A—H3A···S21B0.87 (2)2.55 (2)3.420 (5)172 (5)
N1B—H1B···O21Y0.89 (2)1.84 (3)2.681 (6)157 (6)
N3B—H3B···S21A0.87 (2)2.49 (2)3.354 (5)171 (5)
(III) 5,6-Dimethyl-2-thiouracil top
Crystal data top
C6H8N2OSF(000) = 328
Mr = 156.20Dx = 1.517 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 12075 reflections
a = 6.8295 (10) Åθ = 3.4–26.1°
b = 15.2624 (18) ŵ = 0.40 mm1
c = 7.0948 (11) ÅT = 173 K
β = 112.336 (11)°Plate, colourless
V = 684.04 (17) Å30.50 × 0.25 × 0.20 mm
Z = 4
Data collection top
Stoe IPDS II two-circle
diffractometer
1285 independent reflections
Radiation source: Genix 3D IµS microfocus X-ray source1212 reflections with I > 2σ(I)
Genix 3D multilayer optics monochromatorRint = 0.083
ω scansθmax = 25.7°, θmin = 3.4°
Absorption correction: multi-scan
(X-AREA; Stoe & Cie, 2001)
h = 88
Tmin = 0.827, Tmax = 0.925k = 1718
5187 measured reflectionsl = 87
Refinement top
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.057H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.149 w = 1/[σ2(Fo2) + (0.0769P)2 + 0.358P]
where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.014
1285 reflectionsΔρmax = 0.28 e Å3
102 parametersΔρmin = 0.32 e Å3
2 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.060 (17)
Crystal data top
C6H8N2OSV = 684.04 (17) Å3
Mr = 156.20Z = 4
Monoclinic, P21/cMo Kα radiation
a = 6.8295 (10) ŵ = 0.40 mm1
b = 15.2624 (18) ÅT = 173 K
c = 7.0948 (11) Å0.50 × 0.25 × 0.20 mm
β = 112.336 (11)°
Data collection top
Stoe IPDS II two-circle
diffractometer
1285 independent reflections
Absorption correction: multi-scan
(X-AREA; Stoe & Cie, 2001)
1212 reflections with I > 2σ(I)
Tmin = 0.827, Tmax = 0.925Rint = 0.083
5187 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0572 restraints
wR(F2) = 0.149H atoms treated by a mixture of independent and constrained refinement
S = 1.07Δρmax = 0.28 e Å3
1285 reflectionsΔρmin = 0.32 e Å3
102 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N1A0.2157 (3)0.71481 (14)0.4273 (3)0.0454 (5)
H1A0.085 (3)0.714 (2)0.414 (5)0.062 (9)*
C2A0.3172 (4)0.63730 (17)0.4424 (4)0.0464 (6)
S21A0.19292 (10)0.54215 (4)0.43357 (11)0.0523 (4)
N3A0.5214 (3)0.64419 (15)0.4632 (3)0.0467 (6)
H3A0.593 (4)0.5962 (15)0.478 (5)0.056 (8)*
C4A0.6330 (4)0.72198 (17)0.4746 (4)0.0462 (6)
O41A0.8178 (3)0.71810 (12)0.4909 (3)0.0536 (5)
C5A0.5161 (4)0.80172 (17)0.4663 (4)0.0466 (6)
C51A0.6322 (4)0.88694 (19)0.4896 (5)0.0547 (7)
H51A0.53070.93550.45570.082*
H51B0.70890.88790.39760.082*
H51C0.73290.89320.63070.082*
C6A0.3095 (4)0.79589 (17)0.4392 (4)0.0454 (6)
C61A0.1667 (4)0.87236 (18)0.4199 (4)0.0513 (7)
H61A0.24290.91750.51870.077*
H61B0.04260.85330.44670.077*
H61C0.12080.89640.28170.077*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N1A0.0400 (12)0.0477 (12)0.0515 (12)0.0001 (8)0.0205 (10)0.0008 (8)
C2A0.0468 (14)0.0493 (14)0.0462 (13)0.0011 (10)0.0211 (11)0.0018 (10)
S21A0.0480 (5)0.0470 (5)0.0659 (5)0.0018 (2)0.0262 (4)0.0017 (3)
N3A0.0433 (12)0.0459 (12)0.0550 (12)0.0027 (9)0.0233 (10)0.0019 (9)
C4A0.0444 (14)0.0479 (14)0.0480 (13)0.0005 (10)0.0196 (11)0.0010 (10)
O41A0.0424 (11)0.0565 (11)0.0661 (12)0.0005 (8)0.0255 (9)0.0015 (9)
C5A0.0452 (14)0.0478 (14)0.0492 (13)0.0011 (10)0.0204 (11)0.0004 (10)
C51A0.0468 (14)0.0507 (15)0.0689 (17)0.0010 (11)0.0245 (13)0.0007 (13)
C6A0.0450 (14)0.0491 (14)0.0436 (12)0.0001 (10)0.0184 (11)0.0004 (10)
C61A0.0485 (15)0.0500 (16)0.0590 (16)0.0036 (11)0.0243 (13)0.0014 (11)
Geometric parameters (Å, º) top
N1A—C2A1.355 (3)C5A—C6A1.353 (4)
N1A—C6A1.381 (3)C5A—C51A1.499 (4)
N1A—H1A0.863 (18)C51A—H51A0.9800
C2A—N3A1.350 (3)C51A—H51B0.9800
C2A—S21A1.671 (3)C51A—H51C0.9800
N3A—C4A1.396 (3)C6A—C61A1.494 (4)
N3A—H3A0.865 (18)C61A—H61A0.9800
C4A—O41A1.224 (3)C61A—H61B0.9800
C4A—C5A1.444 (4)C61A—H61C0.9800
C2A—N1A—C6A124.5 (2)C5A—C51A—H51A109.5
C2A—N1A—H1A119 (2)C5A—C51A—H51B109.5
C6A—N1A—H1A117 (2)H51A—C51A—H51B109.5
N3A—C2A—N1A114.6 (2)C5A—C51A—H51C109.5
N3A—C2A—S21A124.1 (2)H51A—C51A—H51C109.5
N1A—C2A—S21A121.2 (2)H51B—C51A—H51C109.5
C2A—N3A—C4A126.2 (2)C5A—C6A—N1A120.1 (2)
C2A—N3A—H3A117 (2)C5A—C6A—C61A124.8 (2)
C4A—N3A—H3A116 (2)N1A—C6A—C61A115.0 (2)
O41A—C4A—N3A119.0 (2)C6A—C61A—H61A109.5
O41A—C4A—C5A125.3 (2)C6A—C61A—H61B109.5
N3A—C4A—C5A115.7 (2)H61A—C61A—H61B109.5
C6A—C5A—C4A118.7 (2)C6A—C61A—H61C109.5
C6A—C5A—C51A123.5 (2)H61A—C61A—H61C109.5
C4A—C5A—C51A117.8 (2)H61B—C61A—H61C109.5
C6A—N1A—C2A—N3A2.4 (4)O41A—C4A—C5A—C51A3.2 (4)
C6A—N1A—C2A—S21A178.05 (19)N3A—C4A—C5A—C51A176.7 (2)
N1A—C2A—N3A—C4A1.5 (4)C4A—C5A—C6A—N1A2.3 (4)
S21A—C2A—N3A—C4A178.9 (2)C51A—C5A—C6A—N1A177.3 (2)
C2A—N3A—C4A—O41A179.1 (2)C4A—C5A—C6A—C61A177.6 (2)
C2A—N3A—C4A—C5A1.1 (4)C51A—C5A—C6A—C61A2.7 (4)
O41A—C4A—C5A—C6A177.1 (2)C2A—N1A—C6A—C5A0.5 (4)
N3A—C4A—C5A—C6A3.0 (4)C2A—N1A—C6A—C61A179.6 (2)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1A—H1A···O41Ai0.86 (2)2.09 (2)2.920 (3)160 (3)
N3A—H3A···S21Aii0.87 (2)2.51 (2)3.368 (2)173 (3)
Symmetry codes: (i) x1, y, z; (ii) x+1, y+1, z+1.
(IIIa) 5,6-Dimethyl-2-thiouracil–1-methylpyrrolidin-2-one (1/1) top
Crystal data top
C6H8N2OS·C5H9NOF(000) = 1088
Mr = 255.34Dx = 1.384 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 17691 reflections
a = 15.2437 (6) Åθ = 3.4–26.1°
b = 6.8275 (17) ŵ = 0.26 mm1
c = 23.555 (2) ÅT = 173 K
V = 2451.5 (7) Å3Needle, colourless
Z = 80.60 × 0.25 × 0.20 mm
Data collection top
Stoe IPDS II two-circle
diffractometer
2319 independent reflections
Radiation source: Genix 3D IµS microfocus X-ray source2081 reflections with I > 2σ(I)
Genix 3D multilayer optics monochromatorRint = 0.110
ω scansθmax = 25.7°, θmin = 3.4°
Absorption correction: multi-scan
(X-AREA; Stoe & Cie, 2001)
h = 1818
Tmin = 0.860, Tmax = 0.950k = 88
17581 measured reflectionsl = 2828
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H atoms treated by a mixture of independent and constrained refinement
S = 1.12 w = 1/[σ2(Fo2) + (0.0453P)2 + 3.1075P]
where P = (Fo2 + 2Fc2)/3
2319 reflections(Δ/σ)max = 0.001
165 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = 0.31 e Å3
Crystal data top
C6H8N2OS·C5H9NOV = 2451.5 (7) Å3
Mr = 255.34Z = 8
Orthorhombic, PbcaMo Kα radiation
a = 15.2437 (6) ŵ = 0.26 mm1
b = 6.8275 (17) ÅT = 173 K
c = 23.555 (2) Å0.60 × 0.25 × 0.20 mm
Data collection top
Stoe IPDS II two-circle
diffractometer
2319 independent reflections
Absorption correction: multi-scan
(X-AREA; Stoe & Cie, 2001)
2081 reflections with I > 2σ(I)
Tmin = 0.860, Tmax = 0.950Rint = 0.110
17581 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0580 restraints
wR(F2) = 0.129H atoms treated by a mixture of independent and constrained refinement
S = 1.12Δρmax = 0.35 e Å3
2319 reflectionsΔρmin = 0.31 e Å3
165 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N1A0.80170 (12)0.5026 (3)0.59190 (8)0.0177 (4)
H1A0.809 (2)0.532 (5)0.6284 (16)0.050 (10)*
C2A0.87471 (14)0.4924 (3)0.56032 (10)0.0178 (5)
S21A0.97563 (4)0.51414 (9)0.58893 (2)0.0235 (2)
N3A0.86276 (13)0.4627 (3)0.50443 (8)0.0193 (4)
H3A0.907 (2)0.459 (4)0.4837 (12)0.024 (7)*
C4A0.78201 (15)0.4458 (3)0.47674 (9)0.0202 (5)
O41A0.78102 (12)0.4195 (3)0.42561 (7)0.0308 (4)
C5A0.70610 (14)0.4616 (3)0.51321 (10)0.0195 (5)
C51A0.61767 (16)0.4481 (4)0.48523 (11)0.0277 (5)
H51A0.57360.40960.51340.042*
H51B0.61970.35010.45490.042*
H51C0.60200.57580.46920.042*
C6A0.71791 (14)0.4883 (3)0.56952 (9)0.0172 (5)
C61A0.64583 (15)0.5045 (4)0.61232 (10)0.0231 (5)
H61A0.61130.62260.60480.035*
H61B0.67110.51230.65050.035*
H61C0.60780.38900.60980.035*
N1X0.86658 (13)0.6219 (3)0.79225 (8)0.0234 (4)
C11X0.82548 (19)0.7986 (4)0.81222 (12)0.0349 (6)
H11A0.80120.87100.77990.052*
H11B0.86900.87990.83170.052*
H11C0.77810.76520.83860.052*
C2X0.85453 (15)0.5458 (4)0.74101 (9)0.0213 (5)
O21X0.80889 (11)0.6194 (3)0.70333 (7)0.0262 (4)
C3X0.90259 (17)0.3541 (4)0.73741 (10)0.0274 (5)
H3X10.93710.34540.70190.033*
H3X20.86120.24240.73910.033*
C4X0.9627 (2)0.3563 (5)0.78924 (12)0.0383 (7)
H4X11.02180.40540.77920.046*
H4X20.96830.22370.80590.046*
C5X0.91651 (17)0.4958 (4)0.83033 (10)0.0309 (6)
H5X10.87730.42360.85650.037*
H5X20.95940.57220.85280.037*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N1A0.0165 (10)0.0230 (10)0.0137 (9)0.0001 (7)0.0000 (7)0.0004 (7)
C2A0.0175 (11)0.0171 (11)0.0188 (11)0.0002 (8)0.0010 (8)0.0013 (8)
S21A0.0143 (3)0.0376 (4)0.0186 (3)0.0006 (2)0.0008 (2)0.0007 (2)
N3A0.0153 (9)0.0266 (10)0.0159 (9)0.0022 (7)0.0020 (7)0.0009 (8)
C4A0.0212 (11)0.0202 (11)0.0191 (11)0.0030 (9)0.0038 (8)0.0010 (9)
O41A0.0311 (9)0.0459 (11)0.0154 (8)0.0056 (8)0.0020 (7)0.0034 (7)
C5A0.0173 (11)0.0191 (11)0.0221 (11)0.0012 (8)0.0021 (9)0.0021 (9)
C51A0.0206 (12)0.0360 (14)0.0265 (12)0.0030 (10)0.0065 (9)0.0043 (11)
C6A0.0153 (10)0.0147 (10)0.0216 (11)0.0010 (8)0.0004 (8)0.0019 (8)
C61A0.0184 (11)0.0269 (12)0.0241 (12)0.0011 (9)0.0034 (9)0.0002 (9)
N1X0.0221 (10)0.0315 (11)0.0165 (9)0.0005 (8)0.0014 (7)0.0024 (8)
C11X0.0364 (14)0.0386 (15)0.0296 (13)0.0050 (12)0.0006 (11)0.0094 (12)
C2X0.0173 (10)0.0290 (12)0.0176 (11)0.0041 (9)0.0020 (9)0.0009 (9)
O21X0.0252 (9)0.0360 (10)0.0173 (8)0.0035 (7)0.0031 (6)0.0009 (7)
C3X0.0336 (13)0.0277 (13)0.0210 (12)0.0022 (10)0.0011 (10)0.0005 (10)
C4X0.0437 (16)0.0431 (16)0.0281 (13)0.0154 (13)0.0055 (12)0.0036 (12)
C5X0.0292 (13)0.0439 (15)0.0194 (12)0.0028 (11)0.0054 (10)0.0014 (11)
Geometric parameters (Å, º) top
N1A—C2A1.340 (3)C61A—H61C0.9800
N1A—C6A1.385 (3)N1X—C2X1.327 (3)
N1A—H1A0.89 (4)N1X—C11X1.438 (3)
C2A—N3A1.345 (3)N1X—C5X1.458 (3)
C2A—S21A1.686 (2)C11X—H11A0.9800
N3A—C4A1.398 (3)C11X—H11B0.9800
N3A—H3A0.84 (3)C11X—H11C0.9800
C4A—O41A1.218 (3)C2X—O21X1.235 (3)
C4A—C5A1.445 (3)C2X—C3X1.502 (3)
C5A—C6A1.351 (3)C3X—C4X1.526 (4)
C5A—C51A1.503 (3)C3X—H3X10.9900
C51A—H51A0.9800C3X—H3X20.9900
C51A—H51B0.9800C4X—C5X1.529 (4)
C51A—H51C0.9800C4X—H4X10.9900
C6A—C61A1.495 (3)C4X—H4X20.9900
C61A—H61A0.9800C5X—H5X10.9900
C61A—H61B0.9800C5X—H5X20.9900
C2A—N1A—C6A123.42 (19)C2X—N1X—C11X124.4 (2)
C2A—N1A—H1A116 (2)C2X—N1X—C5X113.6 (2)
C6A—N1A—H1A120 (2)C11X—N1X—C5X121.4 (2)
N1A—C2A—N3A116.0 (2)N1X—C11X—H11A109.5
N1A—C2A—S21A122.08 (17)N1X—C11X—H11B109.5
N3A—C2A—S21A121.89 (17)H11A—C11X—H11B109.5
C2A—N3A—C4A126.1 (2)N1X—C11X—H11C109.5
C2A—N3A—H3A118 (2)H11A—C11X—H11C109.5
C4A—N3A—H3A116 (2)H11B—C11X—H11C109.5
O41A—C4A—N3A119.0 (2)O21X—C2X—N1X124.9 (2)
O41A—C4A—C5A126.1 (2)O21X—C2X—C3X126.1 (2)
N3A—C4A—C5A114.93 (19)N1X—C2X—C3X109.0 (2)
C6A—C5A—C4A119.1 (2)C2X—C3X—C4X103.8 (2)
C6A—C5A—C51A123.9 (2)C2X—C3X—H3X1111.0
C4A—C5A—C51A116.9 (2)C4X—C3X—H3X1111.0
C5A—C51A—H51A109.5C2X—C3X—H3X2111.0
C5A—C51A—H51B109.5C4X—C3X—H3X2111.0
H51A—C51A—H51B109.5H3X1—C3X—H3X2109.0
C5A—C51A—H51C109.5C3X—C4X—C5X103.7 (2)
H51A—C51A—H51C109.5C3X—C4X—H4X1111.0
H51B—C51A—H51C109.5C5X—C4X—H4X1111.0
C5A—C6A—N1A120.4 (2)C3X—C4X—H4X2111.0
C5A—C6A—C61A125.0 (2)C5X—C4X—H4X2111.0
N1A—C6A—C61A114.57 (19)H4X1—C4X—H4X2109.0
C6A—C61A—H61A109.5N1X—C5X—C4X102.6 (2)
C6A—C61A—H61B109.5N1X—C5X—H5X1111.2
H61A—C61A—H61B109.5C4X—C5X—H5X1111.2
C6A—C61A—H61C109.5N1X—C5X—H5X2111.2
H61A—C61A—H61C109.5C4X—C5X—H5X2111.2
H61B—C61A—H61C109.5H5X1—C5X—H5X2109.2
C6A—N1A—C2A—N3A1.4 (3)C51A—C5A—C6A—C61A1.3 (4)
C6A—N1A—C2A—S21A178.98 (16)C2A—N1A—C6A—C5A0.4 (3)
N1A—C2A—N3A—C4A1.4 (3)C2A—N1A—C6A—C61A179.7 (2)
S21A—C2A—N3A—C4A179.00 (18)C11X—N1X—C2X—O21X2.4 (4)
C2A—N3A—C4A—O41A179.8 (2)C5X—N1X—C2X—O21X174.3 (2)
C2A—N3A—C4A—C5A0.3 (3)C11X—N1X—C2X—C3X175.7 (2)
O41A—C4A—C5A—C6A179.1 (2)C5X—N1X—C2X—C3X3.7 (3)
N3A—C4A—C5A—C6A0.7 (3)O21X—C2X—C3X—C4X168.3 (2)
O41A—C4A—C5A—C51A1.2 (4)N1X—C2X—C3X—C4X13.7 (3)
N3A—C4A—C5A—C51A178.9 (2)C2X—C3X—C4X—C5X24.4 (3)
C4A—C5A—C6A—N1A0.7 (3)C2X—N1X—C5X—C4X19.4 (3)
C51A—C5A—C6A—N1A178.9 (2)C11X—N1X—C5X—C4X168.4 (2)
C4A—C5A—C6A—C61A179.1 (2)C3X—C4X—C5X—N1X26.1 (3)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1A—H1A···O21X0.89 (4)1.86 (4)2.745 (2)171 (3)
N3A—H3A···S21Ai0.84 (3)2.48 (3)3.306 (2)170 (3)
Symmetry code: (i) x+2, y+1, z+1.
(IIIb) 5,6-Dimethyl-2-thiouracil–dimethylformamide (2/1) top
Crystal data top
2C6H8N2OS·C3H7NOZ = 2
Mr = 385.50F(000) = 408
Triclinic, P1Dx = 1.346 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.5895 (13) ÅCell parameters from 12306 reflections
b = 8.6241 (14) Åθ = 3.4–26.1°
c = 15.350 (2) ŵ = 0.30 mm1
α = 100.404 (13)°T = 173 K
β = 95.341 (12)°Plate, colourless
γ = 119.496 (11)°0.45 × 0.35 × 0.25 mm
V = 951.2 (3) Å3
Data collection top
Stoe IPDS II two-circle
diffractometer
3558 independent reflections
Radiation source: Genix 3D IµS microfocus X-ray source3064 reflections with I > 2σ(I)
Genix 3D multilayer optics monochromatorRint = 0.051
ω scansθmax = 25.8°, θmin = 3.4°
Absorption correction: multi-scan
(X-AREA; Stoe & Cie, 2001)
h = 1010
Tmin = 0.875, Tmax = 0.928k = 1010
7421 measured reflectionsl = 1618
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119H atoms treated by a mixture of independent and constrained refinement
S = 1.06 w = 1/[σ2(Fo2) + (0.0607P)2 + 0.5125P]
where P = (Fo2 + 2Fc2)/3
3558 reflections(Δ/σ)max = 0.001
244 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = 0.25 e Å3
Crystal data top
2C6H8N2OS·C3H7NOγ = 119.496 (11)°
Mr = 385.50V = 951.2 (3) Å3
Triclinic, P1Z = 2
a = 8.5895 (13) ÅMo Kα radiation
b = 8.6241 (14) ŵ = 0.30 mm1
c = 15.350 (2) ÅT = 173 K
α = 100.404 (13)°0.45 × 0.35 × 0.25 mm
β = 95.341 (12)°
Data collection top
Stoe IPDS II two-circle
diffractometer
3558 independent reflections
Absorption correction: multi-scan
(X-AREA; Stoe & Cie, 2001)
3064 reflections with I > 2σ(I)
Tmin = 0.875, Tmax = 0.928Rint = 0.051
7421 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0430 restraints
wR(F2) = 0.119H atoms treated by a mixture of independent and constrained refinement
S = 1.06Δρmax = 0.36 e Å3
3558 reflectionsΔρmin = 0.25 e Å3
244 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N1A0.3943 (2)0.0554 (2)0.57837 (12)0.0240 (4)
H1A0.486 (4)0.143 (4)0.6124 (18)0.029*
C2A0.3457 (3)0.1070 (3)0.59750 (14)0.0237 (4)
S21A0.45997 (7)0.12608 (7)0.68532 (4)0.02876 (16)
N3A0.1937 (2)0.2558 (2)0.54088 (12)0.0246 (4)
H3A0.153 (3)0.364 (4)0.5538 (17)0.030*
C4A0.0897 (3)0.2538 (3)0.46699 (14)0.0250 (4)
O41A0.0482 (2)0.3984 (2)0.42258 (11)0.0323 (4)
C5A0.1511 (3)0.0758 (3)0.44965 (14)0.0247 (4)
C51A0.0431 (3)0.0661 (3)0.37054 (16)0.0314 (5)
H51A0.00510.01240.39210.047*
H51B0.05870.19050.33890.047*
H51C0.12260.01390.32890.047*
C6A0.2999 (3)0.0740 (3)0.50726 (14)0.0241 (4)
C61A0.3715 (3)0.2682 (3)0.50221 (16)0.0304 (5)
H61A0.35070.27030.43870.046*
H61B0.50300.34310.52880.046*
H61C0.30780.31860.53580.046*
N1B1.0748 (3)0.4922 (2)0.88973 (13)0.0281 (4)
H1B1.151 (4)0.514 (4)0.935 (2)0.034*
C2B0.9367 (3)0.3165 (3)0.85468 (15)0.0275 (4)
S21B0.91797 (8)0.14167 (8)0.89440 (4)0.03553 (18)
N3B0.8139 (2)0.2908 (3)0.78298 (12)0.0273 (4)
H3B0.723 (4)0.177 (4)0.7581 (18)0.033*
C4B0.8216 (3)0.4249 (3)0.74337 (14)0.0256 (4)
O41B0.7010 (2)0.3807 (2)0.67621 (11)0.0313 (4)
C5B0.9722 (3)0.6086 (3)0.78350 (14)0.0256 (4)
C51B0.9870 (3)0.7594 (3)0.74328 (17)0.0334 (5)
H51D0.94730.83150.78150.050*
H51E0.90890.70560.68230.050*
H51F1.11440.84000.73960.050*
C6B1.0951 (3)0.6373 (3)0.85639 (14)0.0271 (4)
C61B1.2603 (3)0.8221 (3)0.90410 (16)0.0359 (5)
H61D1.34060.86800.86180.054*
H61E1.32670.81000.95540.054*
H61F1.22180.90900.92630.054*
C1X1.3533 (3)0.4763 (3)1.07379 (16)0.0345 (5)
H1X1.26630.34771.05240.041*
O11X1.3421 (3)0.5790 (3)1.03053 (12)0.0458 (4)
N2X1.4782 (2)0.5334 (3)1.14775 (13)0.0294 (4)
C3X1.4884 (4)0.4072 (4)1.1959 (2)0.0457 (6)
H3X11.39050.28051.16490.068*
H3X21.47410.43861.25810.068*
H3X31.60740.41731.19720.068*
C4X1.6158 (3)0.7279 (3)1.18198 (18)0.0396 (6)
H4X11.73040.75131.16410.059*
H4X21.63630.76321.24820.059*
H4X31.57370.80071.15670.059*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N1A0.0235 (9)0.0204 (8)0.0221 (9)0.0076 (7)0.0007 (7)0.0060 (7)
C2A0.0239 (10)0.0225 (9)0.0241 (10)0.0113 (8)0.0055 (8)0.0065 (8)
S21A0.0281 (3)0.0253 (3)0.0285 (3)0.0106 (2)0.0014 (2)0.0109 (2)
N3A0.0248 (9)0.0194 (8)0.0256 (9)0.0082 (7)0.0009 (7)0.0092 (7)
C4A0.0245 (10)0.0251 (10)0.0253 (10)0.0127 (9)0.0044 (8)0.0072 (8)
O41A0.0285 (8)0.0250 (7)0.0328 (8)0.0079 (6)0.0040 (6)0.0081 (6)
C5A0.0263 (10)0.0264 (10)0.0237 (10)0.0143 (8)0.0057 (8)0.0096 (8)
C51A0.0335 (11)0.0306 (11)0.0292 (11)0.0157 (9)0.0009 (9)0.0119 (9)
C6A0.0259 (10)0.0243 (10)0.0248 (10)0.0138 (8)0.0077 (8)0.0089 (8)
C61A0.0349 (11)0.0233 (10)0.0300 (11)0.0132 (9)0.0024 (9)0.0091 (8)
N1B0.0270 (9)0.0281 (9)0.0242 (9)0.0112 (8)0.0002 (7)0.0077 (7)
C2B0.0279 (10)0.0300 (11)0.0260 (11)0.0156 (9)0.0073 (9)0.0077 (9)
S21B0.0408 (3)0.0306 (3)0.0361 (3)0.0177 (3)0.0058 (2)0.0145 (2)
N3B0.0261 (9)0.0218 (9)0.0282 (10)0.0092 (8)0.0015 (7)0.0058 (7)
C4B0.0255 (10)0.0273 (10)0.0252 (10)0.0144 (9)0.0063 (8)0.0068 (8)
O41B0.0291 (8)0.0273 (8)0.0310 (8)0.0113 (6)0.0010 (7)0.0069 (6)
C5B0.0278 (10)0.0244 (10)0.0246 (10)0.0126 (9)0.0078 (8)0.0083 (8)
C51B0.0322 (11)0.0279 (11)0.0372 (13)0.0129 (9)0.0039 (9)0.0120 (9)
C6B0.0276 (10)0.0265 (10)0.0234 (10)0.0117 (9)0.0060 (8)0.0050 (8)
C61B0.0337 (12)0.0281 (11)0.0312 (12)0.0066 (10)0.0030 (10)0.0059 (9)
C1X0.0326 (12)0.0309 (11)0.0335 (12)0.0139 (10)0.0049 (10)0.0033 (9)
O11X0.0448 (10)0.0487 (10)0.0369 (10)0.0209 (9)0.0062 (8)0.0133 (8)
N2X0.0313 (9)0.0284 (9)0.0298 (10)0.0161 (8)0.0043 (8)0.0101 (7)
C3X0.0516 (15)0.0488 (15)0.0550 (17)0.0335 (13)0.0163 (13)0.0294 (13)
C4X0.0326 (12)0.0347 (13)0.0399 (14)0.0118 (10)0.0025 (10)0.0064 (10)
Geometric parameters (Å, º) top
N1A—C2A1.348 (3)N3B—H3B0.88 (3)
N1A—C6A1.379 (3)C4B—O41B1.246 (3)
N1A—H1A0.81 (3)C4B—C5B1.429 (3)
C2A—N3A1.357 (3)C5B—C6B1.361 (3)
C2A—S21A1.674 (2)C5B—C51B1.493 (3)
N3A—C4A1.386 (3)C51B—H51D0.9800
N3A—H3A0.89 (3)C51B—H51E0.9800
C4A—O41A1.229 (3)C51B—H51F0.9800
C4A—C5A1.443 (3)C6B—C61B1.499 (3)
C5A—C6A1.355 (3)C61B—H61D0.9800
C5A—C51A1.498 (3)C61B—H61E0.9800
C51A—H51A0.9800C61B—H61F0.9800
C51A—H51B0.9800C1X—O11X1.232 (3)
C51A—H51C0.9800C1X—N2X1.316 (3)
C6A—C61A1.493 (3)C1X—H1X0.9500
C61A—H61A0.9800N2X—C4X1.449 (3)
C61A—H61B0.9800N2X—C3X1.453 (3)
C61A—H61C0.9800C3X—H3X10.9800
N1B—C2B1.345 (3)C3X—H3X20.9800
N1B—C6B1.375 (3)C3X—H3X30.9800
N1B—H1B0.84 (3)C4X—H4X10.9800
C2B—N3B1.356 (3)C4X—H4X20.9800
C2B—S21B1.668 (2)C4X—H4X30.9800
N3B—C4B1.378 (3)
C2A—N1A—C6A123.94 (18)O41B—C4B—N3B119.33 (19)
C2A—N1A—H1A114.1 (19)O41B—C4B—C5B124.5 (2)
C6A—N1A—H1A122.0 (19)N3B—C4B—C5B116.22 (19)
N1A—C2A—N3A115.03 (18)C6B—C5B—C4B118.34 (19)
N1A—C2A—S21A123.19 (16)C6B—C5B—C51B123.2 (2)
N3A—C2A—S21A121.77 (15)C4B—C5B—C51B118.42 (19)
C2A—N3A—C4A125.99 (17)C5B—C51B—H51D109.5
C2A—N3A—H3A117.5 (16)C5B—C51B—H51E109.5
C4A—N3A—H3A116.4 (16)H51D—C51B—H51E109.5
O41A—C4A—N3A119.38 (18)C5B—C51B—H51F109.5
O41A—C4A—C5A124.55 (19)H51D—C51B—H51F109.5
N3A—C4A—C5A116.04 (18)H51E—C51B—H51F109.5
C6A—C5A—C4A118.26 (19)C5B—C6B—N1B120.45 (19)
C6A—C5A—C51A123.58 (19)C5B—C6B—C61B123.9 (2)
C4A—C5A—C51A118.13 (19)N1B—C6B—C61B115.66 (19)
C5A—C51A—H51A109.5C6B—C61B—H61D109.5
C5A—C51A—H51B109.5C6B—C61B—H61E109.5
H51A—C51A—H51B109.5H61D—C61B—H61E109.5
C5A—C51A—H51C109.5C6B—C61B—H61F109.5
H51A—C51A—H51C109.5H61D—C61B—H61F109.5
H51B—C51A—H51C109.5H61E—C61B—H61F109.5
C5A—C6A—N1A120.69 (18)O11X—C1X—N2X124.2 (2)
C5A—C6A—C61A124.47 (19)O11X—C1X—H1X117.9
N1A—C6A—C61A114.81 (18)N2X—C1X—H1X117.9
C6A—C61A—H61A109.5C1X—N2X—C4X119.8 (2)
C6A—C61A—H61B109.5C1X—N2X—C3X122.4 (2)
H61A—C61A—H61B109.5C4X—N2X—C3X117.7 (2)
C6A—C61A—H61C109.5N2X—C3X—H3X1109.5
H61A—C61A—H61C109.5N2X—C3X—H3X2109.5
H61B—C61A—H61C109.5H3X1—C3X—H3X2109.5
C2B—N1B—C6B124.0 (2)N2X—C3X—H3X3109.5
C2B—N1B—H1B117.6 (19)H3X1—C3X—H3X3109.5
C6B—N1B—H1B118.5 (19)H3X2—C3X—H3X3109.5
N1B—C2B—N3B114.82 (19)N2X—C4X—H4X1109.5
N1B—C2B—S21B123.14 (17)N2X—C4X—H4X2109.5
N3B—C2B—S21B122.04 (17)H4X1—C4X—H4X2109.5
C2B—N3B—C4B126.21 (19)N2X—C4X—H4X3109.5
C2B—N3B—H3B117.2 (18)H4X1—C4X—H4X3109.5
C4B—N3B—H3B116.6 (18)H4X2—C4X—H4X3109.5
C6A—N1A—C2A—N3A0.1 (3)C6B—N1B—C2B—S21B178.21 (16)
C6A—N1A—C2A—S21A178.86 (16)N1B—C2B—N3B—C4B1.6 (3)
N1A—C2A—N3A—C4A0.7 (3)S21B—C2B—N3B—C4B177.39 (17)
S21A—C2A—N3A—C4A179.62 (16)C2B—N3B—C4B—O41B178.4 (2)
C2A—N3A—C4A—O41A178.0 (2)C2B—N3B—C4B—C5B1.3 (3)
C2A—N3A—C4A—C5A0.2 (3)O41B—C4B—C5B—C6B179.5 (2)
O41A—C4A—C5A—C6A176.3 (2)N3B—C4B—C5B—C6B0.2 (3)
N3A—C4A—C5A—C6A1.8 (3)O41B—C4B—C5B—C51B0.4 (3)
O41A—C4A—C5A—C51A1.8 (3)N3B—C4B—C5B—C51B179.92 (19)
N3A—C4A—C5A—C51A179.94 (18)C4B—C5B—C6B—N1B0.5 (3)
C4A—C5A—C6A—N1A2.6 (3)C51B—C5B—C6B—N1B179.4 (2)
C51A—C5A—C6A—N1A179.41 (19)C4B—C5B—C6B—C61B179.1 (2)
C4A—C5A—C6A—C61A175.4 (2)C51B—C5B—C6B—C61B0.8 (3)
C51A—C5A—C6A—C61A2.6 (3)C2B—N1B—C6B—C5B0.2 (3)
C2A—N1A—C6A—C5A1.7 (3)C2B—N1B—C6B—C61B178.9 (2)
C2A—N1A—C6A—C61A176.38 (19)O11X—C1X—N2X—C4X1.1 (4)
C6B—N1B—C2B—N3B0.8 (3)O11X—C1X—N2X—C3X179.0 (2)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1A—H1A···O41B0.81 (3)1.95 (3)2.744 (2)168 (3)
N3A—H3A···O41Ai0.89 (3)1.91 (3)2.799 (2)176 (2)
N1B—H1B···O11X0.84 (3)1.87 (3)2.702 (3)173 (3)
N3B—H3B···S21A0.88 (3)2.42 (3)3.295 (2)176 (2)
Symmetry code: (i) x, y1, z+1.
(IIIc) 5,6-Dimethyl2-thiouracil–dimethylacetamide (2/1) top
Crystal data top
2C6H8N2OS·C4H9NOZ = 2
Mr = 399.53F(000) = 424
Triclinic, P1Dx = 1.362 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.0876 (14) ÅCell parameters from 10760 reflections
b = 11.1034 (17) Åθ = 3.6–26.3°
c = 11.9115 (17) ŵ = 0.30 mm1
α = 80.017 (12)°T = 173 K
β = 70.979 (12)°Plate, colourless
γ = 75.575 (13)°0.38 × 0.24 × 0.22 mm
V = 974.4 (3) Å3
Data collection top
Stoe IPDS II two-circle
diffractometer
3730 independent reflections
Radiation source: Genix 3D IµS microfocus X-ray source3106 reflections with I > 2σ(I)
Genix 3D multilayer optics monochromatorRint = 0.037
ω scansθmax = 25.9°, θmin = 3.6°
Absorption correction: multi-scan
(X-AREA; Stoe & Cie, 2001)
h = 99
Tmin = 0.895, Tmax = 0.937k = 1313
7639 measured reflectionsl = 1414
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.094H atoms treated by a mixture of independent and constrained refinement
S = 1.02 w = 1/[σ2(Fo2) + (0.0559P)2 + 0.1516P]
where P = (Fo2 + 2Fc2)/3
3730 reflections(Δ/σ)max = 0.001
313 parametersΔρmax = 0.25 e Å3
26 restraintsΔρmin = 0.21 e Å3
Crystal data top
2C6H8N2OS·C4H9NOγ = 75.575 (13)°
Mr = 399.53V = 974.4 (3) Å3
Triclinic, P1Z = 2
a = 8.0876 (14) ÅMo Kα radiation
b = 11.1034 (17) ŵ = 0.30 mm1
c = 11.9115 (17) ÅT = 173 K
α = 80.017 (12)°0.38 × 0.24 × 0.22 mm
β = 70.979 (12)°
Data collection top
Stoe IPDS II two-circle
diffractometer
3730 independent reflections
Absorption correction: multi-scan
(X-AREA; Stoe & Cie, 2001)
3106 reflections with I > 2σ(I)
Tmin = 0.895, Tmax = 0.937Rint = 0.037
7639 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.03526 restraints
wR(F2) = 0.094H atoms treated by a mixture of independent and constrained refinement
S = 1.02Δρmax = 0.25 e Å3
3730 reflectionsΔρmin = 0.21 e Å3
313 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will bde even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
N1A0.3340 (2)0.66207 (13)0.58902 (11)0.0249 (3)
H1A0.297 (3)0.5985 (17)0.5767 (17)0.030*
C2A0.3754 (2)0.75101 (15)0.49813 (14)0.0242 (3)
S21A0.36922 (7)0.74289 (4)0.36059 (3)0.03193 (13)
N3A0.42024 (19)0.84895 (13)0.52663 (11)0.0244 (3)
H3A0.455 (3)0.9058 (17)0.4683 (15)0.029*
C4A0.4291 (2)0.86311 (15)0.63825 (13)0.0236 (3)
O41A0.47355 (17)0.95690 (11)0.65117 (10)0.0295 (3)
C5A0.3834 (2)0.76446 (15)0.73080 (13)0.0236 (3)
C51A0.3892 (3)0.77448 (17)0.85373 (14)0.0311 (4)
H51A0.26800.78380.90940.047*0.70 (2)
H51B0.43810.84740.85200.047*0.70 (2)
H51C0.46530.69870.88000.047*0.70 (2)
H51D0.31990.85610.87950.047*0.30 (2)
H51E0.51350.76580.85220.047*0.30 (2)
H51F0.33800.70810.90960.047*0.30 (2)
C6A0.3366 (2)0.66689 (15)0.70329 (13)0.0234 (3)
C61A0.2851 (3)0.55836 (16)0.78930 (14)0.0302 (4)
H61A0.36750.53060.83780.045*
H61B0.29080.48980.74530.045*
H61C0.16300.58330.84140.045*
N1B0.1510 (2)0.32800 (13)0.29838 (12)0.0263 (3)
H1B0.134 (3)0.2957 (19)0.2435 (16)0.032*
C2B0.1999 (2)0.43911 (15)0.27638 (14)0.0254 (3)
S21B0.23463 (7)0.52253 (4)0.14379 (4)0.03505 (14)
N3B0.22123 (19)0.47809 (13)0.37228 (11)0.0246 (3)
H3B0.254 (3)0.5476 (16)0.3609 (17)0.030*
C4B0.1970 (2)0.41463 (15)0.48489 (13)0.0244 (3)
O41B0.21867 (18)0.46152 (12)0.56460 (10)0.0310 (3)
C5B0.1465 (2)0.29637 (15)0.50123 (13)0.0244 (3)
C51B0.1225 (3)0.22574 (17)0.62268 (15)0.0323 (4)
H52A0.01390.26800.67890.048*0.58 (2)
H52B0.22610.22250.64950.048*0.58 (2)
H52C0.11200.14060.61910.048*0.58 (2)
H52D0.22230.15380.61990.048*0.42 (2)
H52E0.00990.19650.64800.048*0.42 (2)
H52F0.11970.28070.67960.048*0.42 (2)
C6B0.1247 (2)0.25629 (15)0.40680 (14)0.0258 (3)
C61B0.0766 (3)0.13378 (16)0.41013 (15)0.0323 (4)
H61D0.18560.06840.39280.049*
H61E0.01500.13990.35020.049*
H61F0.00230.11280.48950.049*
C1X0.178 (2)0.2769 (15)0.0556 (14)0.044 (3)0.50
H1X10.08200.31310.09230.066*0.50
H1X20.28480.23830.11560.066*0.50
H1X30.20570.34280.02390.066*0.50
C2X0.1186 (7)0.1794 (4)0.0443 (4)0.0289 (8)0.50
O21X0.119 (2)0.1867 (19)0.1479 (11)0.038 (3)0.50
N3X0.0769 (4)0.0812 (3)0.0174 (2)0.0288 (6)0.50
C31X0.0193 (6)0.0165 (4)0.1115 (3)0.0374 (9)0.50
H31A0.05130.00890.18220.056*0.50
H31B0.07860.09870.08330.056*0.50
H31C0.11050.00720.13220.056*0.50
C32X0.0686 (6)0.0729 (4)0.1012 (3)0.0358 (8)0.50
H32A0.01690.14530.12320.054*0.50
H32B0.03000.00400.10130.054*0.50
H32C0.18720.07180.15900.054*0.50
C1Y0.221 (2)0.2818 (13)0.0646 (12)0.045 (3)0.50
H1Y10.10590.34070.04760.067*0.50
H1Y20.24420.24620.13930.067*0.50
H1Y30.31640.32570.07240.067*0.50
C2Y0.2183 (7)0.1795 (3)0.0350 (3)0.0278 (8)0.50
O21Y0.0942 (17)0.1934 (17)0.1297 (9)0.0300 (17)0.50
N3Y0.3485 (4)0.0775 (3)0.0188 (2)0.0291 (6)0.50
C31Y0.3569 (6)0.0213 (3)0.1158 (3)0.0359 (8)0.50
H31D0.44890.01540.15030.054*0.50
H31E0.38660.10280.08490.054*0.50
H31F0.24070.01220.17740.054*0.50
C32Y0.5033 (6)0.0665 (4)0.0892 (3)0.0398 (9)0.50
H32D0.46240.07140.15900.060*0.50
H32E0.58530.01390.08160.060*0.50
H32F0.56550.13460.09880.060*0.50
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N1A0.0336 (8)0.0209 (7)0.0230 (6)0.0106 (6)0.0098 (5)0.0007 (5)
C2A0.0250 (8)0.0232 (8)0.0239 (7)0.0067 (7)0.0068 (6)0.0005 (6)
S21A0.0485 (3)0.0313 (2)0.0215 (2)0.0180 (2)0.01356 (17)0.00338 (16)
N3A0.0298 (8)0.0227 (7)0.0221 (6)0.0098 (6)0.0086 (5)0.0027 (5)
C4A0.0226 (8)0.0228 (8)0.0240 (7)0.0031 (6)0.0067 (6)0.0017 (6)
O41A0.0402 (7)0.0236 (6)0.0290 (6)0.0127 (5)0.0123 (5)0.0008 (5)
C5A0.0247 (8)0.0232 (8)0.0222 (7)0.0030 (7)0.0073 (6)0.0021 (6)
C51A0.0418 (10)0.0278 (9)0.0239 (8)0.0069 (8)0.0108 (7)0.0016 (6)
C6A0.0249 (8)0.0225 (8)0.0215 (7)0.0030 (7)0.0073 (6)0.0004 (6)
C61A0.0421 (10)0.0262 (9)0.0238 (8)0.0123 (8)0.0111 (7)0.0037 (6)
N1B0.0346 (8)0.0222 (7)0.0213 (6)0.0080 (6)0.0057 (6)0.0024 (5)
C2B0.0249 (8)0.0225 (8)0.0263 (8)0.0046 (7)0.0047 (6)0.0020 (6)
S21B0.0497 (3)0.0300 (2)0.0243 (2)0.0125 (2)0.01057 (18)0.00578 (17)
N3B0.0311 (8)0.0184 (7)0.0241 (7)0.0084 (6)0.0071 (5)0.0010 (5)
C4B0.0229 (8)0.0227 (8)0.0243 (7)0.0028 (6)0.0051 (6)0.0006 (6)
O41B0.0410 (7)0.0304 (6)0.0260 (6)0.0142 (5)0.0123 (5)0.0001 (5)
C5B0.0254 (8)0.0204 (8)0.0238 (7)0.0047 (6)0.0043 (6)0.0011 (6)
C51B0.0399 (10)0.0266 (9)0.0272 (8)0.0087 (8)0.0084 (7)0.0050 (7)
C6B0.0260 (8)0.0209 (8)0.0254 (8)0.0050 (7)0.0013 (6)0.0014 (6)
C61B0.0425 (11)0.0225 (8)0.0299 (8)0.0113 (8)0.0044 (7)0.0026 (7)
C1X0.057 (6)0.033 (4)0.043 (4)0.018 (4)0.014 (3)0.002 (3)
C2X0.031 (2)0.029 (2)0.029 (2)0.0054 (19)0.0120 (18)0.0015 (15)
O21X0.062 (6)0.036 (3)0.025 (3)0.017 (4)0.024 (2)0.001 (2)
N3X0.0390 (17)0.0275 (15)0.0227 (13)0.0097 (13)0.0114 (11)0.0013 (11)
C31X0.048 (2)0.034 (2)0.0305 (18)0.0185 (19)0.0080 (16)0.0030 (15)
C32X0.048 (2)0.038 (2)0.0278 (17)0.0112 (18)0.0189 (16)0.0045 (14)
C1Y0.073 (9)0.028 (4)0.031 (4)0.007 (4)0.024 (5)0.012 (2)
C2Y0.041 (2)0.0238 (19)0.0244 (18)0.010 (2)0.0148 (18)0.0017 (13)
O21Y0.036 (3)0.032 (2)0.025 (4)0.010 (2)0.012 (3)0.004 (3)
N3Y0.0383 (17)0.0273 (15)0.0233 (13)0.0106 (13)0.0115 (12)0.0033 (11)
C31Y0.049 (3)0.0268 (18)0.0370 (19)0.0110 (18)0.0230 (18)0.0068 (15)
C32Y0.040 (3)0.040 (2)0.0343 (19)0.009 (2)0.0043 (16)0.0038 (16)
Geometric parameters (Å, º) top
N1A—C2A1.348 (2)C51B—H52D0.9800
N1A—C6A1.379 (2)C51B—H52E0.9800
N1A—H1A0.880 (15)C51B—H52F0.9800
C2A—N3A1.354 (2)C6B—C61B1.496 (2)
C2A—S21A1.6739 (16)C61B—H61D0.9800
N3A—C4A1.392 (2)C61B—H61E0.9800
N3A—H3A0.878 (15)C61B—H61F0.9800
C4A—O41A1.231 (2)C1X—C2X1.502 (12)
C4A—C5A1.438 (2)C1X—H1X10.9800
C5A—C6A1.354 (2)C1X—H1X20.9800
C5A—C51A1.504 (2)C1X—H1X30.9800
C51A—H51A0.9800C2X—O21X1.251 (10)
C51A—H51B0.9800C2X—N3X1.334 (5)
C51A—H51C0.9800N3X—C32X1.456 (4)
C51A—H51D0.9800N3X—C31X1.463 (4)
C51A—H51E0.9800C31X—H31A0.9800
C51A—H51F0.9800C31X—H31B0.9800
C6A—C61A1.490 (2)C31X—H31C0.9800
C61A—H61A0.9800C32X—H32A0.9800
C61A—H61B0.9800C32X—H32B0.9800
C61A—H61C0.9800C32X—H32C0.9800
N1B—C2B1.346 (2)C1Y—C2Y1.492 (10)
N1B—C6B1.377 (2)C1Y—H1Y10.9800
N1B—H1B0.858 (15)C1Y—H1Y20.9800
C2B—N3B1.363 (2)C1Y—H1Y30.9800
C2B—S21B1.6627 (16)C2Y—O21Y1.245 (11)
N3B—C4B1.380 (2)C2Y—N3Y1.333 (5)
N3B—H3B0.853 (15)N3Y—C31Y1.455 (4)
C4B—O41B1.236 (2)N3Y—C32Y1.472 (5)
C4B—C5B1.434 (2)C31Y—H31D0.9800
C5B—C6B1.355 (2)C31Y—H31E0.9800
C5B—C51B1.498 (2)C31Y—H31F0.9800
C51B—H52A0.9800C32Y—H32D0.9800
C51B—H52B0.9800C32Y—H32E0.9800
C51B—H52C0.9800C32Y—H32F0.9800
C2A—N1A—C6A124.04 (14)C5B—C51B—H52A109.5
C2A—N1A—H1A118.9 (13)C5B—C51B—H52B109.5
C6A—N1A—H1A117.0 (13)C5B—C51B—H52C109.5
N1A—C2A—N3A114.98 (14)C5B—C51B—H52D109.5
N1A—C2A—S21A122.83 (12)C5B—C51B—H52E109.5
N3A—C2A—S21A122.19 (12)H52D—C51B—H52E109.5
C2A—N3A—C4A125.95 (13)C5B—C51B—H52F109.5
C2A—N3A—H3A117.2 (12)H52D—C51B—H52F109.5
C4A—N3A—H3A116.7 (13)H52E—C51B—H52F109.5
O41A—C4A—N3A118.97 (14)C5B—C6B—N1B120.36 (15)
O41A—C4A—C5A125.06 (14)C5B—C6B—C61B124.03 (15)
N3A—C4A—C5A115.97 (14)N1B—C6B—C61B115.59 (14)
C6A—C5A—C4A118.42 (14)C6B—C61B—H61D109.5
C6A—C5A—C51A122.97 (14)C6B—C61B—H61E109.5
C4A—C5A—C51A118.61 (14)H61D—C61B—H61E109.5
C5A—C51A—H51A109.5C6B—C61B—H61F109.5
C5A—C51A—H51B109.5H61D—C61B—H61F109.5
C5A—C51A—H51C109.5H61E—C61B—H61F109.5
C5A—C51A—H51D109.5O21X—C2X—N3X121.2 (10)
C5A—C51A—H51E109.5O21X—C2X—C1X120.8 (12)
H51D—C51A—H51E109.5N3X—C2X—C1X117.9 (8)
C5A—C51A—H51F109.5C2X—N3X—C32X122.2 (3)
H51D—C51A—H51F109.5C2X—N3X—C31X119.9 (3)
H51E—C51A—H51F109.5C32X—N3X—C31X117.6 (3)
C5A—C6A—N1A120.65 (14)C2Y—C1Y—H1Y1109.5
C5A—C6A—C61A124.69 (14)C2Y—C1Y—H1Y2109.5
N1A—C6A—C61A114.66 (14)H1Y1—C1Y—H1Y2109.5
C6A—C61A—H61A109.5C2Y—C1Y—H1Y3109.5
C6A—C61A—H61B109.5H1Y1—C1Y—H1Y3109.5
H61A—C61A—H61B109.5H1Y2—C1Y—H1Y3109.5
C6A—C61A—H61C109.5O21Y—C2Y—N3Y122.9 (8)
H61A—C61A—H61C109.5O21Y—C2Y—C1Y118.4 (10)
H61B—C61A—H61C109.5N3Y—C2Y—C1Y118.6 (8)
C2B—N1B—C6B124.58 (14)C2Y—N3Y—C31Y120.5 (3)
C2B—N1B—H1B121.2 (14)C2Y—N3Y—C32Y122.6 (3)
C6B—N1B—H1B114.3 (14)C31Y—N3Y—C32Y116.3 (3)
N1B—C2B—N3B114.32 (14)N3Y—C31Y—H31D109.5
N1B—C2B—S21B123.59 (12)N3Y—C31Y—H31E109.5
N3B—C2B—S21B122.09 (12)H31D—C31Y—H31E109.5
C2B—N3B—C4B126.00 (14)N3Y—C31Y—H31F109.5
C2B—N3B—H3B116.6 (13)H31D—C31Y—H31F109.5
C4B—N3B—H3B117.4 (13)H31E—C31Y—H31F109.5
O41B—C4B—N3B119.39 (15)N3Y—C32Y—H32D109.5
O41B—C4B—C5B124.13 (14)N3Y—C32Y—H32E109.5
N3B—C4B—C5B116.48 (14)H32D—C32Y—H32E109.5
C6B—C5B—C4B118.26 (14)N3Y—C32Y—H32F109.5
C6B—C5B—C51B124.81 (15)H32D—C32Y—H32F109.5
C4B—C5B—C51B116.93 (14)H32E—C32Y—H32F109.5
C6A—N1A—C2A—N3A0.4 (2)C2B—N3B—C4B—O41B179.08 (16)
C6A—N1A—C2A—S21A179.44 (13)C2B—N3B—C4B—C5B0.7 (2)
N1A—C2A—N3A—C4A1.0 (2)O41B—C4B—C5B—C6B179.12 (16)
S21A—C2A—N3A—C4A179.88 (13)N3B—C4B—C5B—C6B0.6 (2)
C2A—N3A—C4A—O41A179.32 (16)O41B—C4B—C5B—C51B1.2 (3)
C2A—N3A—C4A—C5A0.9 (2)N3B—C4B—C5B—C51B179.08 (15)
O41A—C4A—C5A—C6A179.86 (17)C4B—C5B—C6B—N1B0.1 (2)
N3A—C4A—C5A—C6A0.1 (2)C51B—C5B—C6B—N1B179.60 (16)
O41A—C4A—C5A—C51A0.1 (3)C4B—C5B—C6B—C61B178.49 (16)
N3A—C4A—C5A—C51A179.63 (15)C51B—C5B—C6B—C61B1.2 (3)
C4A—C5A—C6A—N1A0.4 (2)C2B—N1B—C6B—C5B0.5 (3)
C51A—C5A—C6A—N1A179.79 (16)C2B—N1B—C6B—C61B178.02 (16)
C4A—C5A—C6A—C61A179.66 (16)O21X—C2X—N3X—C32X177.4 (9)
C51A—C5A—C6A—C61A0.1 (3)C1X—C2X—N3X—C32X6.7 (10)
C2A—N1A—C6A—C5A0.4 (3)O21X—C2X—N3X—C31X3.9 (11)
C2A—N1A—C6A—C61A179.74 (16)C1X—C2X—N3X—C31X179.7 (9)
C6B—N1B—C2B—N3B0.5 (2)O21Y—C2Y—N3Y—C31Y3.5 (10)
C6B—N1B—C2B—S21B178.75 (13)C1Y—C2Y—N3Y—C31Y176.3 (8)
N1B—C2B—N3B—C4B0.1 (2)O21Y—C2Y—N3Y—C32Y174.3 (9)
S21B—C2B—N3B—C4B179.38 (13)C1Y—C2Y—N3Y—C32Y5.5 (9)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1A—H1A···O41B0.88 (2)1.83 (2)2.7111 (19)175 (2)
N3A—H3A···O41Ai0.88 (2)1.96 (2)2.8327 (18)175 (2)
N1B—H1B···O21X0.86 (2)1.85 (2)2.687 (15)165 (2)
N1B—H1B···O21Y0.86 (2)2.06 (2)2.910 (14)171 (2)
N3B—H3B···S21A0.85 (2)2.56 (2)3.4058 (15)170 (2)
Symmetry code: (i) x+1, y+2, z+1.
(IIId) 5,6-Dimethyl-2-thiouracil–dimethyl sulfoxide (2/1) top
Crystal data top
2C6H8N2OS·C2H6OSF(000) = 824
Mr = 390.54Dx = 1.382 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 13070 reflections
a = 8.1597 (14) Åθ = 3.4–26.0°
b = 22.612 (3) ŵ = 0.42 mm1
c = 10.5576 (17) ÅT = 173 K
β = 105.459 (13)°Needle, colourless
V = 1877.5 (5) Å30.55 × 0.15 × 0.10 mm
Z = 4
Data collection top
Stoe IPDS II two-circle
diffractometer
3518 independent reflections
Radiation source: Genix 3D IµS microfocus X-ray source2772 reflections with I > 2σ(I)
Genix 3D multilayer optics monochromatorRint = 0.116
ω scansθmax = 25.7°, θmin = 3.4°
Absorption correction: multi-scan
(X-AREA; Stoe & Cie, 2001)
h = 99
Tmin = 0.804, Tmax = 0.960k = 2723
13972 measured reflectionsl = 1212
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.071Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.180H atoms treated by a mixture of independent and constrained refinement
S = 1.11 w = 1/[σ2(Fo2) + (0.0806P)2 + 2.8969P]
where P = (Fo2 + 2Fc2)/3
3518 reflections(Δ/σ)max < 0.001
235 parametersΔρmax = 0.43 e Å3
4 restraintsΔρmin = 0.34 e Å3
Crystal data top
2C6H8N2OS·C2H6OSV = 1877.5 (5) Å3
Mr = 390.54Z = 4
Monoclinic, P21/nMo Kα radiation
a = 8.1597 (14) ŵ = 0.42 mm1
b = 22.612 (3) ÅT = 173 K
c = 10.5576 (17) Å0.55 × 0.15 × 0.10 mm
β = 105.459 (13)°
Data collection top
Stoe IPDS II two-circle
diffractometer
3518 independent reflections
Absorption correction: multi-scan
(X-AREA; Stoe & Cie, 2001)
2772 reflections with I > 2σ(I)
Tmin = 0.804, Tmax = 0.960Rint = 0.116
13972 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0714 restraints
wR(F2) = 0.180H atoms treated by a mixture of independent and constrained refinement
S = 1.11Δρmax = 0.43 e Å3
3518 reflectionsΔρmin = 0.34 e Å3
235 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N1A0.8739 (4)0.54261 (15)0.3399 (3)0.0198 (7)
H1A0.830 (5)0.538 (2)0.406 (3)0.024*
C2A0.8742 (5)0.49842 (17)0.2538 (4)0.0189 (8)
S21A0.80280 (14)0.43048 (5)0.26911 (10)0.0257 (3)
N3A0.9328 (4)0.51424 (15)0.1504 (3)0.0205 (7)
H3A0.933 (6)0.4853 (16)0.096 (4)0.025*
C4A0.9912 (5)0.56902 (18)0.1275 (4)0.0202 (8)
O41A1.0435 (4)0.57678 (13)0.0288 (3)0.0258 (7)
C5A0.9825 (5)0.61480 (18)0.2206 (4)0.0218 (8)
C51A1.0367 (6)0.6758 (2)0.1970 (5)0.0333 (10)
H51A0.93760.69850.14830.050*
H51B1.12060.67390.14590.050*
H51C1.08740.69510.28150.050*
C6A0.9263 (5)0.59914 (18)0.3258 (4)0.0202 (8)
C61A0.9149 (5)0.64135 (17)0.4327 (4)0.0237 (8)
H61A1.02530.66060.46790.036*
H61B0.88380.61960.50320.036*
H61C0.82830.67140.39700.036*
N1B0.5470 (4)0.38357 (16)0.6755 (3)0.0233 (7)
H1B0.512 (6)0.3497 (13)0.701 (4)0.028*
C2B0.5876 (5)0.38152 (18)0.5598 (4)0.0219 (8)
S21B0.56248 (16)0.32153 (5)0.46540 (11)0.0324 (3)
N3B0.6542 (4)0.43197 (15)0.5266 (3)0.0208 (7)
H3B0.684 (6)0.429 (2)0.453 (3)0.025*
C4B0.6807 (5)0.48410 (18)0.5977 (4)0.0203 (8)
O41B0.7455 (4)0.52696 (13)0.5560 (3)0.0250 (6)
C5B0.6310 (5)0.48390 (18)0.7182 (4)0.0197 (8)
C51B0.6579 (6)0.5401 (2)0.7975 (4)0.0271 (9)
H51D0.63580.53270.88290.041*
H51E0.57990.57060.75030.041*
H51F0.77550.55350.81080.041*
C6B0.5666 (5)0.43343 (19)0.7538 (4)0.0222 (8)
C61B0.5183 (5)0.4258 (2)0.8799 (4)0.0269 (9)
H61D0.62140.42250.95280.040*
H61E0.44990.38980.87530.040*
H61F0.45200.46010.89420.040*
C1X0.2783 (6)0.2095 (2)0.6029 (5)0.0390 (11)
H1X10.16120.21780.60510.058*
H1X20.28680.16840.57580.058*
H1X30.31010.23620.54020.058*
S2X0.41773 (16)0.22062 (5)0.76211 (11)0.0333 (3)
O21X0.4316 (5)0.28685 (15)0.7835 (3)0.0383 (8)
C3X0.6074 (7)0.1976 (3)0.7238 (6)0.0467 (13)
H3X10.62940.22340.65560.070*
H3X20.59430.15670.69190.070*
H3X30.70290.20000.80290.070*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N1A0.0247 (17)0.0162 (17)0.0197 (16)0.0007 (13)0.0082 (13)0.0005 (13)
C2A0.0184 (18)0.018 (2)0.0209 (18)0.0031 (15)0.0066 (14)0.0007 (15)
S21A0.0360 (6)0.0183 (5)0.0280 (5)0.0038 (4)0.0178 (4)0.0031 (4)
N3A0.0256 (17)0.0172 (17)0.0207 (16)0.0001 (14)0.0096 (13)0.0014 (13)
C4A0.0186 (18)0.022 (2)0.0186 (18)0.0007 (15)0.0017 (14)0.0017 (15)
O41A0.0343 (16)0.0247 (16)0.0223 (14)0.0042 (12)0.0144 (12)0.0006 (11)
C5A0.0209 (19)0.020 (2)0.0238 (19)0.0009 (15)0.0042 (15)0.0016 (15)
C51A0.045 (3)0.027 (2)0.031 (2)0.009 (2)0.015 (2)0.0018 (18)
C6A0.0188 (18)0.020 (2)0.0205 (18)0.0038 (15)0.0025 (14)0.0031 (15)
C61A0.035 (2)0.0147 (19)0.0220 (19)0.0031 (17)0.0087 (16)0.0029 (15)
N1B0.0257 (17)0.0225 (19)0.0226 (16)0.0011 (14)0.0083 (13)0.0010 (13)
C2B0.0211 (19)0.023 (2)0.0213 (19)0.0004 (16)0.0048 (15)0.0007 (15)
S21B0.0484 (7)0.0225 (6)0.0300 (6)0.0063 (5)0.0167 (5)0.0065 (4)
N3B0.0248 (17)0.0200 (18)0.0198 (15)0.0019 (13)0.0099 (13)0.0010 (13)
C4B0.0168 (18)0.022 (2)0.0216 (18)0.0019 (15)0.0044 (14)0.0018 (16)
O41B0.0303 (15)0.0216 (15)0.0266 (14)0.0021 (12)0.0137 (12)0.0005 (11)
C5B0.0159 (17)0.021 (2)0.0204 (18)0.0024 (15)0.0020 (14)0.0003 (15)
C51B0.028 (2)0.030 (2)0.024 (2)0.0005 (18)0.0090 (16)0.0053 (17)
C6B0.0193 (18)0.029 (2)0.0175 (18)0.0025 (16)0.0026 (15)0.0005 (16)
C61B0.030 (2)0.030 (2)0.024 (2)0.0030 (18)0.0115 (17)0.0022 (17)
C1X0.044 (3)0.027 (3)0.041 (3)0.002 (2)0.002 (2)0.003 (2)
S2X0.0462 (7)0.0229 (6)0.0312 (6)0.0036 (5)0.0111 (5)0.0071 (4)
O21X0.060 (2)0.0245 (17)0.0340 (17)0.0076 (15)0.0193 (15)0.0002 (13)
C3X0.044 (3)0.033 (3)0.061 (3)0.003 (2)0.010 (2)0.013 (2)
Geometric parameters (Å, º) top
N1A—C2A1.351 (5)N3B—C4B1.383 (5)
N1A—C6A1.368 (5)N3B—H3B0.877 (19)
N1A—H1A0.873 (19)C4B—O41B1.240 (5)
C2A—N3A1.352 (5)C4B—C5B1.434 (5)
C2A—S21A1.666 (4)C5B—C6B1.351 (6)
N3A—C4A1.372 (5)C5B—C51B1.505 (6)
N3A—H3A0.875 (19)C51B—H51D0.9800
C4A—O41A1.239 (5)C51B—H51E0.9800
C4A—C5A1.442 (6)C51B—H51F0.9800
C5A—C6A1.357 (6)C6B—C61B1.495 (5)
C5A—C51A1.490 (6)C61B—H61D0.9800
C51A—H51A0.9800C61B—H61E0.9800
C51A—H51B0.9800C61B—H61F0.9800
C51A—H51C0.9800C1X—S2X1.778 (5)
C6A—C61A1.500 (5)C1X—H1X10.9800
C61A—H61A0.9800C1X—H1X20.9800
C61A—H61B0.9800C1X—H1X30.9800
C61A—H61C0.9800S2X—O21X1.514 (3)
N1B—C2B1.349 (5)S2X—C3X1.778 (6)
N1B—C6B1.382 (5)C3X—H3X10.9800
N1B—H1B0.882 (19)C3X—H3X20.9800
C2B—N3B1.350 (5)C3X—H3X30.9800
C2B—S21B1.663 (4)
C2A—N1A—C6A124.2 (3)C4B—N3B—H3B120 (3)
C2A—N1A—H1A122 (3)O41B—C4B—N3B119.6 (3)
C6A—N1A—H1A113 (3)O41B—C4B—C5B124.4 (4)
N1A—C2A—N3A114.3 (3)N3B—C4B—C5B116.0 (3)
N1A—C2A—S21A123.6 (3)C6B—C5B—C4B118.2 (4)
N3A—C2A—S21A122.1 (3)C6B—C5B—C51B124.6 (4)
C2A—N3A—C4A126.6 (3)C4B—C5B—C51B117.2 (4)
C2A—N3A—H3A114 (3)C5B—C51B—H51D109.5
C4A—N3A—H3A120 (3)C5B—C51B—H51E109.5
O41A—C4A—N3A119.3 (4)H51D—C51B—H51E109.5
O41A—C4A—C5A124.2 (4)C5B—C51B—H51F109.5
N3A—C4A—C5A116.4 (3)H51D—C51B—H51F109.5
C6A—C5A—C4A117.4 (4)H51E—C51B—H51F109.5
C6A—C5A—C51A123.9 (4)C5B—C6B—N1B120.9 (4)
C4A—C5A—C51A118.7 (4)C5B—C6B—C61B124.0 (4)
C5A—C51A—H51A109.5N1B—C6B—C61B115.0 (4)
C5A—C51A—H51B109.5C6B—C61B—H61D109.5
H51A—C51A—H51B109.5C6B—C61B—H61E109.5
C5A—C51A—H51C109.5H61D—C61B—H61E109.5
H51A—C51A—H51C109.5C6B—C61B—H61F109.5
H51B—C51A—H51C109.5H61D—C61B—H61F109.5
C5A—C6A—N1A121.1 (4)H61E—C61B—H61F109.5
C5A—C6A—C61A123.5 (4)S2X—C1X—H1X1109.5
N1A—C6A—C61A115.4 (3)S2X—C1X—H1X2109.5
C6A—C61A—H61A109.5H1X1—C1X—H1X2109.5
C6A—C61A—H61B109.5S2X—C1X—H1X3109.5
H61A—C61A—H61B109.5H1X1—C1X—H1X3109.5
C6A—C61A—H61C109.5H1X2—C1X—H1X3109.5
H61A—C61A—H61C109.5O21X—S2X—C1X106.5 (2)
H61B—C61A—H61C109.5O21X—S2X—C3X106.8 (2)
C2B—N1B—C6B123.5 (4)C1X—S2X—C3X96.9 (3)
C2B—N1B—H1B115 (3)S2X—C3X—H3X1109.5
C6B—N1B—H1B121 (3)S2X—C3X—H3X2109.5
N1B—C2B—N3B114.8 (4)H3X1—C3X—H3X2109.5
N1B—C2B—S21B123.4 (3)S2X—C3X—H3X3109.5
N3B—C2B—S21B121.8 (3)H3X1—C3X—H3X3109.5
C2B—N3B—C4B126.5 (3)H3X2—C3X—H3X3109.5
C2B—N3B—H3B113 (3)
C6A—N1A—C2A—N3A0.6 (5)C6B—N1B—C2B—N3B1.7 (6)
C6A—N1A—C2A—S21A177.5 (3)C6B—N1B—C2B—S21B179.5 (3)
N1A—C2A—N3A—C4A0.7 (5)N1B—C2B—N3B—C4B1.1 (6)
S21A—C2A—N3A—C4A178.8 (3)S21B—C2B—N3B—C4B179.9 (3)
C2A—N3A—C4A—O41A179.0 (4)C2B—N3B—C4B—O41B179.0 (4)
C2A—N3A—C4A—C5A2.7 (6)C2B—N3B—C4B—C5B0.3 (6)
O41A—C4A—C5A—C6A178.3 (4)O41B—C4B—C5B—C6B178.0 (4)
N3A—C4A—C5A—C6A3.5 (5)N3B—C4B—C5B—C6B1.3 (5)
O41A—C4A—C5A—C51A1.0 (6)O41B—C4B—C5B—C51B0.9 (6)
N3A—C4A—C5A—C51A177.2 (4)N3B—C4B—C5B—C51B179.8 (3)
C4A—C5A—C6A—N1A2.5 (5)C4B—C5B—C6B—N1B0.8 (6)
C51A—C5A—C6A—N1A178.2 (4)C51B—C5B—C6B—N1B179.6 (4)
C4A—C5A—C6A—C61A178.2 (3)C4B—C5B—C6B—C61B176.6 (4)
C51A—C5A—C6A—C61A1.1 (6)C51B—C5B—C6B—C61B2.2 (6)
C2A—N1A—C6A—C5A0.5 (6)C2B—N1B—C6B—C5B0.8 (6)
C2A—N1A—C6A—C61A179.8 (3)C2B—N1B—C6B—C61B178.4 (4)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1A—H1A···O41B0.87 (2)1.90 (2)2.776 (4)176 (4)
N3A—H3A···O41Ai0.88 (2)1.96 (2)2.837 (4)174 (4)
N1B—H1B···O21X0.88 (2)1.88 (2)2.746 (5)168 (5)
N3B—H3B···S21A0.88 (2)2.39 (2)3.258 (3)171 (4)
Symmetry code: (i) x+2, y+1, z.
Crystallization of 5-propyl-2-thiouracil, (I), 5-methoxy-2-thiouracil, (II) and (IIa), and 5,6-dimethyl-2-thiouracil, (III)–(IIId). Apart from (III), which was crystallized at 323 K, all crystallization experiments were performed at 295 K. top
CompoundAmount (mg, mmol)Solvent
(I)1.6, 0.009DMF (20 µl)
(II)2.0, 0.013DMF (40 µl)
(IIa)2.0, 0.013DMAC (80 µl)
(III)2.7, 0.017H2O (400 µl)
(IIIa)2.7, 0.017NMP (80 µl)
(IIIb)3.2, 0.020DMF (40 µl)
(IIIc)2.6, 0.017DMAC (40 µl)
(IIId)2.3, 0.015DMSO (40 µl)

Experimental details

(I)(II)(IIa)(III)(IIIa)
Crystal data
Chemical formulaC7H10N2OSC5H6N2O2SC5H6N2O2S·C4H9NOC6H8N2OSC6H8N2OS·C5H9NO
Mr170.23158.18245.30156.20255.34
Crystal system, space groupTriclinic, P1Monoclinic, P21/cMonoclinic, P21/mMonoclinic, P21/cOrthorhombic, Pbca
Temperature (K)173173173173173
a, b, c (Å)8.6637 (10), 10.3098 (13), 10.7255 (13)4.3141 (6), 16.9101 (18), 8.9965 (12)13.225 (3), 6.4726 (8), 13.867 (3)6.8295 (10), 15.2624 (18), 7.0948 (11)15.2437 (6), 6.8275 (17), 23.555 (2)
α, β, γ (°)76.253 (10), 71.401 (9), 70.983 (9)90, 93.593 (10), 9090, 97.170 (15), 9090, 112.336 (11), 9090, 90, 90
V3)848.81 (18)655.02 (14)1177.7 (4)684.04 (17)2451.5 (7)
Z44448
Radiation typeMo KαMo KαMo KαMo KαMo Kα
µ (mm1)0.330.430.270.400.26
Crystal size (mm)0.30 × 0.22 × 0.100.32 × 0.11 × 0.060.30 × 0.18 × 0.120.50 × 0.25 × 0.200.60 × 0.25 × 0.20
Data collection
DiffractometerStoe IPDS II two-circle
diffractometer
Stoe IPDS II two-circle
diffractometer
Stoe IPDS II two-circle-
diffractometer
Stoe IPDS II two-circle
diffractometer
Stoe IPDS II two-circle
diffractometer
Absorption correctionMulti-scan
(X-AREA; Stoe & Cie, 2001)
Multi-scan
(X-AREA; Stoe & Cie, 2001)
Multi-scan
(X-AREA; Stoe & Cie, 2001)
Multi-scan
(X-AREA; Stoe & Cie, 2001)
Multi-scan
(X-AREA; Stoe & Cie, 2001)
Tmin, Tmax0.909, 0.9680.876, 0.9750.923, 0.9680.827, 0.9250.860, 0.950
No. of measured, independent and
observed [I > 2σ(I)] reflections
6626, 3163, 2609 5186, 1228, 1072 9319, 2470, 1767 5187, 1285, 1212 17581, 2319, 2081
Rint0.0620.0770.1160.0830.110
(sin θ/λ)max1)0.6080.6090.6170.6090.610
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.040, 0.105, 1.00 0.043, 0.112, 1.06 0.077, 0.190, 1.12 0.057, 0.149, 1.07 0.058, 0.129, 1.12
No. of reflections31631228247012852319
No. of parameters21798227102165
No. of restraints0226020
H-atom treatmentH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å3)0.28, 0.270.39, 0.220.50, 0.420.28, 0.320.35, 0.31


(IIIb)(IIIc)(IIId)
Crystal data
Chemical formula2C6H8N2OS·C3H7NO2C6H8N2OS·C4H9NO2C6H8N2OS·C2H6OS
Mr385.50399.53390.54
Crystal system, space groupTriclinic, P1Triclinic, P1Monoclinic, P21/n
Temperature (K)173173173
a, b, c (Å)8.5895 (13), 8.6241 (14), 15.350 (2)8.0876 (14), 11.1034 (17), 11.9115 (17)8.1597 (14), 22.612 (3), 10.5576 (17)
α, β, γ (°)100.404 (13), 95.341 (12), 119.496 (11)80.017 (12), 70.979 (12), 75.575 (13)90, 105.459 (13), 90
V3)951.2 (3)974.4 (3)1877.5 (5)
Z224
Radiation typeMo KαMo KαMo Kα
µ (mm1)0.300.300.42
Crystal size (mm)0.45 × 0.35 × 0.250.38 × 0.24 × 0.220.55 × 0.15 × 0.10
Data collection
DiffractometerStoe IPDS II two-circle
diffractometer
Stoe IPDS II two-circle
diffractometer
Stoe IPDS II two-circle
diffractometer
Absorption correctionMulti-scan
(X-AREA; Stoe & Cie, 2001)
Multi-scan
(X-AREA; Stoe & Cie, 2001)
Multi-scan
(X-AREA; Stoe & Cie, 2001)
Tmin, Tmax0.875, 0.9280.895, 0.9370.804, 0.960
No. of measured, independent and
observed [I > 2σ(I)] reflections
7421, 3558, 3064 7639, 3730, 3106 13972, 3518, 2772
Rint0.0510.0370.116
(sin θ/λ)max1)0.6110.6140.611
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.043, 0.119, 1.06 0.035, 0.094, 1.02 0.071, 0.180, 1.11
No. of reflections355837303518
No. of parameters244313235
No. of restraints0264
H-atom treatmentH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å3)0.36, 0.250.25, 0.210.43, 0.34

Computer programs: X-AREA (Stoe & Cie, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), Mercury (Macrae et al., 2008) and XP in SHELXTL-Plus (Sheldrick, 2008), publCIF (Westrip, 2010).

Hydrogen-bond geometry (Å, º) for (I) top
D—H···AD—HH···AD···AD—H···A
N1A—H1A···S21B0.87 (3)2.44 (3)3.3030 (18)170 (2)
N3A—H3A···O41Bi0.85 (3)1.99 (3)2.835 (2)175 (3)
N1B—H1B···S21A0.87 (3)2.42 (3)3.2715 (18)168 (2)
N3B—H3B···O41Aii0.88 (3)1.94 (3)2.811 (2)168 (2)
Symmetry codes: (i) x, y, z+1; (ii) x, y, z1.
Hydrogen-bond geometry (Å, º) for (II) top
D—H···AD—HH···AD···AD—H···A
N1A—H1A···O51Ai0.862 (18)2.323 (18)3.176 (3)170 (3)
N1A—H1A···O41Ai0.862 (18)2.45 (3)2.975 (3)120 (2)
N3A—H3A···S21Aii0.867 (17)2.485 (19)3.337 (2)167 (3)
Symmetry codes: (i) x+1, y+3/2, z+1/2; (ii) x+1, y+1, z+1.
Hydrogen-bond geometry (Å, º) for (IIa) top
D—H···AD—HH···AD···AD—H···A
N1A—H1A···O21X0.86 (2)1.89 (4)2.658 (6)147 (6)
N3A—H3A···S21B0.87 (2)2.55 (2)3.420 (5)172 (5)
N1B—H1B···O21Y0.89 (2)1.84 (3)2.681 (6)157 (6)
N3B—H3B···S21A0.87 (2)2.49 (2)3.354 (5)171 (5)
Hydrogen-bond geometry (Å, º) for (III) top
D—H···AD—HH···AD···AD—H···A
N1A—H1A···O41Ai0.863 (18)2.09 (2)2.920 (3)160 (3)
N3A—H3A···S21Aii0.865 (18)2.508 (19)3.368 (2)173 (3)
Symmetry codes: (i) x1, y, z; (ii) x+1, y+1, z+1.
Hydrogen-bond geometry (Å, º) for (IIIa) top
D—H···AD—HH···AD···AD—H···A
N1A—H1A···O21X0.89 (4)1.86 (4)2.745 (2)171 (3)
N3A—H3A···S21Ai0.84 (3)2.48 (3)3.306 (2)170 (3)
Symmetry code: (i) x+2, y+1, z+1.
Hydrogen-bond geometry (Å, º) for (IIIb) top
D—H···AD—HH···AD···AD—H···A
N1A—H1A···O41B0.81 (3)1.95 (3)2.744 (2)168 (3)
N3A—H3A···O41Ai0.89 (3)1.91 (3)2.799 (2)176 (2)
N1B—H1B···O11X0.84 (3)1.87 (3)2.702 (3)173 (3)
N3B—H3B···S21A0.88 (3)2.42 (3)3.295 (2)176 (2)
Symmetry code: (i) x, y1, z+1.
Hydrogen-bond geometry (Å, º) for (IIIc) top
D—H···AD—HH···AD···AD—H···A
N1A—H1A···O41B0.880 (15)1.833 (16)2.7111 (19)175.1 (18)
N3A—H3A···O41Ai0.878 (15)1.957 (15)2.8327 (18)174.9 (18)
N1B—H1B···O21X0.858 (15)1.85 (2)2.687 (15)165 (2)
N1B—H1B···O21Y0.858 (15)2.06 (2)2.910 (14)171 (2)
N3B—H3B···S21A0.853 (15)2.563 (16)3.4058 (15)169.8 (18)
Symmetry code: (i) x+1, y+2, z+1.
Hydrogen-bond geometry (Å, º) for (IIId) top
D—H···AD—HH···AD···AD—H···A
N1A—H1A···O41B0.873 (19)1.90 (2)2.776 (4)176 (4)
N3A—H3A···O41Ai0.875 (19)1.96 (2)2.837 (4)174 (4)
N1B—H1B···O21X0.882 (19)1.88 (2)2.746 (5)168 (5)
N3B—H3B···S21A0.877 (19)2.39 (2)3.258 (3)171 (4)
Symmetry code: (i) x+2, y+1, z.
 

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