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Journal logoSTRUCTURAL
CHEMISTRY
ISSN: 2053-2296

Synthesis of 5-(aryl­methyl­­idene­amino)-4-(1H-benzo[d]imidazol-1-yl)py­rimi­dine hybrids: synthetic sequence and the mol­ecular and supra­molecular structures of two inter­mediates and three final products

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aDepartamento de Química Inorgánica y Orgánica, Universidad de Jaén, 23071 Jaén, Spain, bCampus Universitario, Universidad de Ciencias Aplicadas y Ambientales (UDCA), Calle 222, No. 55-37, Bogotá, Colombia, cDepartamento de Química, Universidad Nacional de Colombia, Cuidad Universitaria, Carrera 30, No. 45-03, Edificio 451, Bogotá, Colombia, and dSchool of Chemistry, University of St Andrews, St Andrews, Fife KY16 9S, United Kingdom
*Correspondence e-mail: cg@st-andrews.ac.uk

Edited by L. Dawe, Wilfrid Laurier University, Waterloo, Ontario, Canada (Received 20 March 2023; accepted 25 April 2023; online 5 May 2023)

A concise and versatile synthesis of 5-(aryl­methyl­idene­amino)-4-(1H-benzo[d]imidazol-1-yl)py­rimi­dines has been developed, starting from 4-(1H-benzo[d]imidazol-1-yl)py­rimi­dines, and we report here the synthesis and spectroscopic and structural characterization of three such products, along with those of two inter­mediates in the reaction pathway. The inter­mediates 4-[2-(4-chloro­phen­yl)-1H-benzo[d]imidazol-1-yl]-6-meth­oxy­py­rimi­dine-2,5-di­amine, (II), and 4-[2-(4-bromo­phen­yl)-1H-benzo[d]imidazol-1-yl]-6-meth­oxy­py­rimi­dine-2,5-di­amine, (III), crystallize as the isostructural monohydrates C18H15ClN5O·H2O and C18H15BrN5O·H2O, respectively, in which the components are linked into complex sheets by O—H⋯N and N—H⋯O hydro­gen bonds. In the product (E)-4-meth­oxy-5-[(4-nitro­benzyl­idene)amino]-6-[2-(4-nitro­phen­yl)-1H-benzo[d]imidazol-1-yl]pyrimidin-2-amine, which crystallizes as a 1:1 solvate with dimethyl sulfoxide, C25H18N8O5·C2H6OS, (IV), inversion-related pairs of the py­rimi­dine component are linked by N—H⋯N hydro­gen bonds to form cyclic centrosymmetric R22(8) dimers to which pairs of solvent mol­ecules are linked by N—H⋯O hydro­gen bonds. (E)-4-Meth­oxy-5-[(4-methyl­benzyl­idene)amino]-6-[2-(4-methyl­phen­yl)-1H-benzo[d]imidazol-1-yl]pyrimidin-2-amine, C27H24N6O, (V), crystallizes with Z′ = 2 and the mol­ecules are linked into a three-dimensional framework structure by a combination of N—H⋯N, C—H⋯N and C—H⋯π(arene) hydro­gen bonds. The analogous product (E)-4-meth­oxy-5-[(4-chloro­benzyl­idene)amino]-6-[2-(4-methyl­phen­yl)-1H-benzo[d]imidazol-1-yl]pyrimidin-2-amine, C26H21ClN6O, (VI), crystallizes from dimethyl sulfoxide in two forms: one, denoted (VIa), is isostructural with (V), and the other, denoted (VIb), crystallizes with Z′ = 1, but as an unknown solvate in which the py­rimi­dine mol­ecules are linked by N—H⋯N hydro­gen bonds to form a ribbon containing two types of centrosymmetric ring.

1. Introduction

The benzimidazole unit has been shown to be an important heterocyclic fragment present in a large number of com­pounds with broad biological activity, including anti­microbial and anti­tumour activity (El-Gohary & Shaaban, 2017[El-Gohary, N. S. & Shaaban, M. I. (2017). Eur. J. Med. Chem. 131, 255-262.]). In addition, amino­py­rimi­dines are important building blocks for the synthesis of new heterocyclic systems (Abdul-Rida et al., 2017[Abdul-Rida, N. A., Mohammed, T. I., Al-Masoudi, N. A. & Frotscher, M. (2017). Med. Chem. Res. 26, 830-840.]), and they are also considered to constitute an important pharmacophoric fragment (Loving et al., 2009[Loving, K., Salam, N. K. & Sherman, W. (2009). J. Comput. Aided Mol. Des. 23, 541-554.]), because of the wide biological activities that com­pounds containing this unit have shown, including anti-HIV activity (Al-Masoudi et al., 2016[Al-Masoudi, N. A., March, Y. A., Al-Ameri, J. J., Ali, D. S. & Pannecouque, C. (2016). Chem. Biol. Interface, 6, 69-73.]) and cyclin-dependent kinase 2 (CDK2) inhibitory activity (Cortese et al., 2016[Cortese, D., Chegaev, K., Guglielmo, S., Wang, L. Z., Golding, B. T., Cano, C. & Fruttero, R. (2016). ChemMedChem, 11, 1705-1708.]).

Mol­ecules which include both benzimidazole and amino­py­rimi­dine nuclei have been studied against some cancer cell lines, yielding inter­esting results that motivate the synthesis of this type of hybrid structures. This is the case for a series of novel fused pyrimido–benzimidazole systems reported re­cently, where one of the structures showed an IC50 value less than 2 µM against the neuroblastoma SK-N-BE(2)-C and Kelly cell lines (Gadde et al., 2023[Gadde, S., Kleynhans, A., Holien, J. K., Bhadbhade, M., Nguyen, P. L. D., Mittra, R., Yu, T. T., Carter, D. R., Parker, M. W., Marshall, G. M., Cheung, B. B. & Kumar, N. (2023). Bioorg. Chem. 136, 106462.]).

Non-fused py­rimi­dine–benzimidazole hybrids have also exhibited promising results for anti­tumour activity in human cancer cell lines (Sana et al., 2021[Sana, S., Reddy, V. G., Srinivasa Reddy, T., Tokala, R., Kumar, R., Bhargava, S. K. & Shankaraiah, N. (2021). Bioorg. Chem. 110, 104765.]). A recent report has attributed the cytotoxicity of py­rimi­dine–benzimidazole hybrids to the presence of meth­oxy groups on the arene rings linked to the py­rimi­dine core, while the presence of electron-withdrawing groups seems to eliminate anti­cancer activity (Ismail et al., 2022[Ismail, M. M. F., El-Sehrawi, H., Elzahabi, H. S. A., Shawer, T. & Ammar, Y. A. (2022). Polycyclic Aromat. Compd. 42, 2363-2377.]). However, any attempt to predict, prior to experimental evaluation, the effects of substituent variation in the products reported here would, perforce, be largely speculative and thus will not be pursued in this article.

We have recently reported the synthesis and the mol­ecular and supra­molecular structures of a set N5-aryl­methyl-6-meth­oxy-4-(2-aryl-1H-benzo[d]imidazol-1-yl)py­rimi­dine-2,5-di­amines, where the two pendent aryl residues are identical, as they are both introduced in the reaction of N4-(2-amino­phen­yl)-6-meth­oxy­py­rimi­dine-2,4,5-tri­amine with an aryl aldehyde in a 1:2 molar ratio (Vicentes et al., 2019[Vicentes, D. E., Rodríguez, R., Ochoa, P., Cobo, J. & Glidewell, C. (2019). Acta Cryst. C75, 1405-1416.]). Because of the biological importance of both the 2-amino­py­rimi­dine residue (Koroleva et al., 2010[Koroleva, E. V., Gusak, K. N. & Ignatovich, Z. V. (2010). Russ. Chem. Rev. 79, 655-681.]; Jadhav et al., 2021[Jadhav, M., Sankhe, K., Bhandare, R. R., Edis, Z., Bloukh, S. H. & Khan, T. A. (2021). Molecules, 26, 5170.]) and the benzimidazole unit (Singh et al., 2013[Singh, G., Kaur, M. & Chander, M. (2013). Int. Res. J. Pharm. 4, 82-87.]; Wu et al., 2022[Wu, K., Peng, X., Chen, M., Li, Y., Tang, G., Peng, J., Peng, Y. & Cao, X. (2022). Chem. Biol. Drug Des. 99, 736-757.]), whether alone or in combination, in the search for new biological targets (Sana et al., 2021[Sana, S., Reddy, V. G., Srinivasa Reddy, T., Tokala, R., Kumar, R., Bhargava, S. K. & Shankaraiah, N. (2021). Bioorg. Chem. 110, 104765.]), we have now explored the combination of different aryl residues linked to the 5-amino group.

We report here an extension of the py­rimi­dine–benzimidazole hybrid systems reported previously (Vicentes et al., 2019[Vicentes, D. E., Rodríguez, R., Ochoa, P., Cobo, J. & Glidewell, C. (2019). Acta Cryst. C75, 1405-1416.]), in which the N5-methylaryl-6-meth­oxy-4-(2-aryl-1H-benzo[d]imidazol-1-yl)py­rimi­dine-2,5-di­amine precusors (A) (see Scheme 1[link]) are subjected to de­benzyl­ation effected by ammonium hexa­nitratocerate(IV) (CAN) to produce the 6-meth­oxy-4-(2-aryl-1H-benzo[d]imidazol-1-yl)py­rimi­dine-2,5-di­amines (I)–(III) (Scheme 1[link]) for use as inter­mediates in the derivatization at the 5-amino group. When the corresponding reaction was attempted using the type (A) precursor having X = Y = NO2, no de­benzyl­ation was observed, but instead the reaction produced a complex mixture from which only (E)-4-meth­oxy-5-[(4-nitro­benzyl­idene)amino]-6-[2-(4-nitro­phen­yl)-1H-benzo[d]imidazol-1-yl]pyrimidin-2-amine, (IV)[link], could be isolated in pure form as a 1:1 solvate with di­methyl sulfoxide, in a yield of only 15%.

When com­pound (I) was condensed with 4-methyl­benz­al­de­hyde, the product (E)-4-meth­oxy-5-[(4-methyl­benzyl­idene)amino]-6-[2-(4-methyl­phen­yl)-1H-benzo[d]imidazol-1-yl]pyrimidin-2-amine, (V)[link], was formed in 74% yield and straightforwardly crystallized in the solvent-free form from a mixture of ethyl acetate and hexane. However, the corresponding reaction with 4-chloro­benz­al­de­hyde gave, after crystallization, a mixture of two crystalline forms of (E)-4-chloro-5-[(4-methyl­benzyl­idene)amino]-6-[2-(4-methyl­phen­yl)-1H-benzo[d]imidazol-1-yl]pyrimidin-2-amine, one denoted (VIa), which is isostructural with (V)[link], together with a second form, denoted (VIb), which is a solvate of unknown constitution. The structure of com­pound (I) has already been reported (Vicentes et al., 2019[Vicentes, D. E., Rodríguez, R., Ochoa, P., Cobo, J. & Glidewell, C. (2019). Acta Cryst. C75, 1405-1416.]) and we report here the mol­ecular and supra­molecular structures of com­pounds (II)–(VI).

[Scheme 1]

2. Experimental

2.1. Synthesis and crystallization

The atom labelling is based throughout on the IUPAC chemical names, with the immediate substituents on the py­rimi­dine ring labelled according to their location; thus, N21, N41, N51 and O61, with appropriate modifications when Z′ = 2, and with the rest of the substituent labels following the IUPAC name.

All of the signals in the 1H and 13C NMR spectra listed below were assigned using one-dimensional DEPT-135 13C spectra and two-dimensional COSY, HSQC and HMBC spectra.

The precursors of type (A) and the inter­mediate (I) (see Scheme 1[link]) were prepared using previously described methods (Vicentes et al., 2019[Vicentes, D. E., Rodríguez, R., Ochoa, P., Cobo, J. & Glidewell, C. (2019). Acta Cryst. C75, 1405-1416.]). In the NMR listings given below, the atom labelling for com­pounds (II)–(IV) and (VI) follows that used in Figs. 1[link]–3[link][link] and 6, and the labelling for com­pound (V)[link] follows that for (VI).

[Figure 1]
Figure 1
The two independent components in the structure of com­pound (II)[link], showing the atom-labelling scheme and the hydro­gen bond (drawn as a dashed line) within the selected asymmetric unit. Displacement ellipsoids are drawn at the 50% probability level.
[Figure 2]
Figure 2
The two independent components in the structure of com­pound (III)[link], showing the atom-labelling scheme and the hydro­gen bond (drawn as a dashed line) within the selected asymmetric unit. Displacement ellipsoids are drawn at the 50% probability level.
[Figure 3]
Figure 3
The two independent components in the structure of com­pound (IV)[link], showing the atom-labelling scheme and the hydro­gen bond (drawn as a dashed line) within the selected asymmetric unit. Displacement ellipsoids are drawn at the 50% probability level.

For the synthesis of com­pounds (II)–(IV), a solution of ammonium hexa­nitratocerate(IV) (0.69 g, 1.5 mmol) in a mixture of aceto­nitrile and water (3:1 v/v, 50 ml) was added to a solution of the appropriate precursor (A) [0.5 mmol; 0.22 g for (II)[link] and 0.26 g for each of (III)[link] and (IV)] in aceto­nitrile (10 ml); the resulting mixtures were then stirred for 2 h at 273 K. A saturated solution of sodium carbonate (15 ml) was then added and the aceto­nitrile was removed under reduced pressure. The residue was exhaustively extracted with ethyl acetate and the combined organic extracts were washed with water and then dried over anhydrous sodium sulfate. The solvent was removed under reduced pressure and the crude solid products purified by column chromatography on silica gel (0.040–0.063 mm) using a mixture of ethyl acetate and hexane (3:2 v/v) as the eluent.

Compound (II)[link]: colourless solid, yield 54%, m.p. 510 K (decomposition). IR (ATR, cm−1): 3494, 3399, 3303, 3188, 2922, 1606, 1562, 1467, 1450, 1403, 1261, 1241, 1092, 1011, 798, 739. NMR (DMSO-d6): δ(1H, 400 MHz) 7.79 (ddd, J = 8.0, 1.3, 0.7 Hz, 1H, H44), 7.62 (d, J = 8.8 Hz, 2H, H72, H76), 7.28 (d, J = 8.8 Hz, 2H, H73, H75), 7.25 (dd, J = 4.0, 1.5 Hz, 1H, H45), 7.21 (dd, J = 7.2, 1.3 Hz, 1H, H46), 7.15 (ddd, J = 7.8, 1.4, 0.7 Hz, 1H, H47), 4.56 (s, 2H,NH2), 3.97 (s, 3H, OCH3), 3.06 (s, 2H, NH2); δ(13C, 101 MHz) 162.33 (C6), 155.03 (C2), 150.94 (C42), 143.39 (C43A), 140.29 (C4), 136.25 (C74), 135.24 (C47A), 129.95 (C72, C76), 129.04 (C73, C75), 128.57 (C71), 124.12 (C46), 123.65 (C45), 120.30 (C44), 117.03 (C5), 110.86 (C47), 54.75 (OCH3). HRMS (ESI–QTOF) m/z found 367.1069, [M + H]+ requires for C18H15ClN6O, 367.1069.

Compound (III)[link]: colourless solid, yield 48%, m.p. 508 K (decomposition). IR (ATR, cm−1): 3494, 3398, 3302, 3185, 1338, 1609, 1562, 1466, 1450, 1401, 1241, 1053, 1008, 832, 741. NMR (DMSO-d6): δ(1H, 400 MHz) 7.75 (d, J = 7.3 Hz, 1H, H44), 7.63 (m, 4H, H72, H73, H75, H76), 7.32–7.21 (m, 1H, H45, H46), 7.12 (d, J = 7.4 Hz, 1H, H47), 5.99 (s, 2H, NH2), 4.17 (s, 2H, NH2), 3.96 (s, 3H, OCH3); δ(13C, 101 MHz) 161.49 (C6), 154.72 (C2), 150.65 (C42), 142.74 (C43A), 138.91 (C4), 135.55 (C74A), 131.54 (C73, C75), 130.16 (C72, C76), 129.46 (C71), 123.33 (C46), 123.25 (C45), 122.67 (C74), 119.34 (C44), 116.92 (C5), 111.32 (C47), 54.03 (OCH3). HRMS (ESI–QTOF) m/z found 413.0541, [M + H]+ requires for C18H15BrN6O, 413.0545.

Compound (IV)[link]: yellow solid, yield 15%, m.p. 517 K (decomposition). IR (ATR, cm−1): 3449, 3338, 3230, 1638, 1559, 1527, 1448, 1339, 853, 743. NMR (DMSO-d6): δ(1H, 400 MHz) 8.66 (s, 1H, H57), 8.18 (d, J = 8.8 Hz, 2H, H53, H55), 8.13 (d, J = 9.0 Hz, 2H, H73, H75), 7.88–7.84 (m, 1H, H44), 7.82 (d, J = 9.1 Hz, 2H, H72, H76), 7.59–7.51 (m, 3H, H47, H52, H56), 7.49 (s, 2H, NH2), 7.41–7.27 (m, 2H, H45, H46), 4.01 (s, 3H, OCH3); δ(13C, 101 MHz) 164.07 (C6), 160.63 (C2), 156.79 (C57), 154.28 (C4), 150.82 (C74), 148.31 (C54), 147.57 (C42), 142.59 (C43A), 142.26 (C51), 136.55 (C71), 136.34 (C47A), 128.83 (C72, C73), 128.34 (C53, C56), 124.25 (46), 123.84 (C53, C55), 123.71 (C73, C75), 123.42 (C45), 119.81 (C44), 114.09 (C5), 112.24 (C47), 54.46 (OCH3). HRMS (ESI–QTOF) m/z found 511.1471, [M + H]+ requires for C25H18N8O5, 511.1471.

For the synthesis of com­pounds (V)[link] and (VI) (Scheme 2[link]), a mixture of com­pound (I) (0.17 g, 0.05 mmol) and the appropriate benz­al­de­hyde (0.7 mmol) [84 mg of 4-methyl­benz­al­de­hyde for (V)[link] or 92 mg of 4-chloro­benz­al­de­hyde for (VI)] in acetic acid (3 ml) was stirred at ambient temperature for 1 h. The resulting precipitates were collected by filtration and washed first with an aqueous solution of sodium hydro­gen carbonate (10% w/v) and then with water. The crude solid products were then purified by column chromatography on silica gel (0.040–0.063 mm) using a mixture of ethyl acetate and hexane (3:2 v/v) as eluent.

[Scheme 2]

Compound (V)[link]: yellow solid, yield 74%, m.p. 491 K (decomposition). IR (ATR, cm−1): 3303, 3157, 1652, 1606, 1576, 1522, 1449, 1345, 1248, 1078, 1041, 817, 738. NMR (DMSO-d6): δ(1H, 400 MHz) 8.33 (s, 1H, H57), 7.73 (d, J = 6.9 Hz, 1H, H44), 7.45 (d, J = 8.2 Hz, 2H, H72, H76), 7.37 (d, J = 6.7 Hz, 1H, H47), 7.29–7.19 (m, 4H, H45, H46, H52, H56), 7.16–7.07 (m, 6H, H73, H75, H53, H55, NH2), 3.94 (s, 3H, OCH3), 2.26 (s, 3H, C77), 2.25 (s, 3H, C58); δ(13C, 101 MHz) 163.79 (C6), 160.29 (C2), 159.89 (C57), 152.97 (C42), 152.89 (C4), 142.67 (C43A), 140.92 (C34), 139.15 (C74), 136.35 (C47A), 134.01 (C28), 129.06 (C73, C75), 128.88 (C53, C55), 127.87 (C71), 127.73 (C52, C56), 127.66 (C72, C76), 122.92 (C46), 122.55 (C45), 119.03 (C44), 116.05 (C5), 111.45 (C47), 54.18 (OCH3), 21.02 (C77), 20.83 (C58). HRMS (ESI–QTOF) m/z found 449.2084, [M + H]+ requires for C27H24N6O, 449.2084.

Compound (VI): yellow solid, yield 95%, m.p. 493 K (decomposition). IR (ATR, cm−1): 3308, 3138, 1652, 1573, 1520, 1450, 1362, 1080, 1042, 821, 735. NMR (DMSO-d6): δ(1H, 400 MHz) 8.43 (s, 1H, H57), 7.76 (d, J = 6.8 Hz, 1H, H44), 7.45 (d, J = 8.2 Hz, 2H, H72, H76), 7.44–7.36 (m, 3H, H47, H53, H55), 7.34 (d, J = 8.6 Hz, 2H, H52, H56), 7.31–7.19 (m, 4H, H45, H26, NH2), 7.09 (d, J = 8.0 Hz, 2H, H73, H75), 3.97 (s, 3H, OCH3), 2.25 (s, 3H, CCH3); δ(13C, 101 MHz) 163.85 (C6), 160.18 (C2), 158.37 (C57), 153.78 (C4), 153.01 (C42), 142.70 (C43A), 139.21 (C74), 136.34 (C47A), 135.50 (C54), 135.42 (C51), 129.21 (C52, C56), 128.92 (C73, C75), 128.62 (C53, C55), 127,86 (C71), 127.64 (C72, C76), 123.01 (C46), 122.66 (C45), 119.10 (C44), 115.24 (C5), 111.54 (C47), 54.28 (OCH3), 20.85 (CH3). HRMS (ESI–QTOF) m/z found 469.1538, [M + H]+ requires for C26H21ClN6O, 469.1538.

Crystals of com­pounds (II)–(V) suitable for single-crystal X-ray diffraction were grown by slow evaporation at ambient temperature and in the presence of air from a solution in dimethyl sulfoxide for (II)[link], (IV)[link] and (V)[link] or from a solution in methanol for (III)[link], providing (II)[link] and (III)[link] as monohydrates, (IV)[link] as a dimethyl sulfoxide (DMSO) solvate and (V)[link] in the solvent-free form. A similar crystallization of (VI) from a solution in DMSO yielded two types of crystal, i.e. the more block-like solvent-free form (VIa) and the more plate-like solvate (VIb); no attempt was made to determine the relative qu­anti­ties of the two crystalline forms.

2.2. Refinement

Crystal data, data collection and refinement details for com­pounds (II)–(VI) are summarized in Table 1[link]. For (VIb), one reflection (010), which had been attenuated by the beam stop, and one bad outlier reflection ([\overline{1}]03) were omitted from the data set. All H atoms were located in difference maps. The H atoms bonded to C atoms were then treated as riding atoms in geometrically idealized positions, with C—H = 0.95 (alkenic and aromatic) or 0.98 Å (CH3), and with Uiso(H) = kUeq(C), where k = 1.5 for the methyl groups, which were permitted to rotate but not to tilt, and 1.2 for all other H atoms. For the H atoms bonded to N or O atoms, the atomic coordinates were refined with Uiso(H) = 1.2Ueq(N) or 1.5Ueq(O), giving the N—H and O—H distances shown in Table 3. For (VIb), conventional refinement converged only to R1 = 0.146 and wR2 = 0.3473. Examination of the structure of (VIb) at this point using PLATON (Spek, 2020[Spek, A. L. (2020). Acta Cryst. E76, 1-11.]) showed that the structure formed by the mol­ecules of (VI) enclosed a void centred at (0,0,[1 \over 2]), whose volume was ca 166 Å3 in a unit cell of total volume 1272.6 (2) Å3. The void thus occupies ca 13.0% of the total unit-cell volume, and there are a number of significant peaks in the difference map clustered within this void. The largest peak had a magnitude of 4.64 e Å−3 and further examination of this structure using the SQUEEZE procedure (Spek, 2015[Spek, A. L. (2015). Acta Cryst. C71, 9-18.]) indicated that the void contained around 43 electrons not hitherto accounted for. This number is consistent with the presence of one mol­ecule of dimethyl sulfoxide, but no convincing solvent model could be developed from the difference peaks within the void and hence the reflection data were subjected to the SQUEEZE procedure (Spek, 2015[Spek, A. L. (2015). Acta Cryst. C71, 9-18.]), and the resultant modified reflection file was used for the refinement reported here. The CIF describing the structure obtained before the SQUEEZE procedure was applied has been included in the supporting information.

Table 1
Experimental details

For all structures: triclinic, P[\overline{1}]. Experiments were carried out at 100 K with Mo Kα radiation using a Bruker D8 Venture diffractometer. Absorption was corrected for by multi-scan methods (SADABS; Bruker, 2016[Bruker (2016). SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.]). H atoms were treated by a mixture of independent and constrained refinement.

  (II) (III) (IV)
Crystal data
Chemical formula C18H15ClN6O·H2O C18H15BrN6O·H2O C25H18N8O5·C2H6OS
Mr 384.83 429.29 588.60
a, b, c (Å) 8.2156 (6), 11.0343 (7), 11.3968 (8) 8.1975 (7), 11.1963 (8), 11.3644 (10) 9.8192 (8), 10.2765 (7), 14.4096 (11)
α, β, γ (°) 107.980 (2), 109.725 (2), 98.541 (2) 107.938 (2), 109.866 (3), 98.683 (3) 71.718 (2), 74.872 (3), 88.786 (3)
V3) 887.43 (11) 894.39 (13) 1329.87 (18)
Z 2 2 2
μ (mm−1) 0.24 2.33 0.18
Crystal size (mm) 0.22 × 0.20 × 0.14 0.15 × 0.11 × 0.08 0.19 × 0.15 × 0.10
 
Data collection
Tmin, Tmax 0.907, 0.967 0.719, 0.830 0.905, 0.982
No. of measured, independent and observed [I > 2σ(I)] reflections 35335, 4071, 3487 50505, 4457, 3696 66738, 6115, 4641
Rint 0.053 0.073 0.112
(sin θ/λ)max−1) 0.650 0.667 0.649
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.036, 0.088, 1.06 0.030, 0.072, 1.09 0.050, 0.108, 1.05
No. of reflections 4071 4457 6115
No. of parameters 263 263 388
Δρmax, Δρmin (e Å−3) 0.34, −0.32 0.49, −0.71 0.32, −0.35
  (V) (VIa) (VIb)
Crystal data
Chemical formula C27H24N6O C26H21ClN6O C26H21ClN6O
Mr 448.52 468.94 468.94
a, b, c (Å) 10.2203 (15), 14.821 (2), 16.594 (2) 10.2298 (7), 14.8344 (9), 16.5321 (10) 9.6520 (8), 9.7408 (10), 14.1445 (12)
α, β, γ (°) 99.616 (5), 92.153 (6), 106.083 (5) 99.672 (2), 92.038 (2), 106.704 (2) 98.183 (4), 104.638 (3), 90.059 (4)
V3) 2371.9 (6) 2359.4 (3) 1272.6 (2)
Z 4 4 2
μ (mm−1) 0.08 0.19 0.18
Crystal size (mm) 0.25 × 0.22 × 0.12 0.18 × 0.13 × 0.11 0.12 × 0.09 × 0.08
 
Data collection
Tmin, Tmax 0.948, 0.990 0.926, 0.979 0.916, 0.986
No. of measured, independent and observed [I > 2σ(I)] reflections 116861, 10869, 8351 126128, 10821, 8240 60695, 5849, 4653
Rint 0.074 0.079 0.074
(sin θ/λ)max−1) 0.650 0.650 0.651
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.050, 0.127, 1.06 0.058, 0.164, 1.04 0.050, 0.115, 1.03
No. of reflections 10869 10821 5849
No. of parameters 631 629 315
Δρmax, Δρmin (e Å−3) 0.50, −0.23 0.74, −0.61 0.34, −0.53
Computer programs: APEX3 (Bruker, 2018[Bruker (2018). APEX3. Bruker AXS Inc., Madison, Wisconsin, USA.]), SAINT (Bruker, 2017[Bruker (2017). SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.]), SHELXT2014 (Sheldrick, 2015a[Sheldrick, G. M. (2015a). Acta Cryst. A71, 3-8.]), SHELXL2014 (Sheldrick, 2015b[Sheldrick, G. M. (2015b). Acta Cryst. C71, 3-8.]) and PLATON (Spek, 2020[Spek, A. L. (2020). Acta Cryst. E76, 1-11.]).

3. Results and discussion

Oxidation of the type (A) precursors having X = Cl or Br gave the products (II)[link] and (III)[link] (see Scheme 1[link]) in exactly the same way as reported previously for the formation of (I) (Vicentes et al., 2019[Vicentes, D. E., Rodríguez, R., Ochoa, P., Cobo, J. & Glidewell, C. (2019). Acta Cryst. C75, 1405-1416.]). The formation of (I)–(III) presumably proceeds via the oxidation of the precursors to form the corresponding Schiff bases, which are hydrolysed to (I)–(III) during the subsequent work-up procedures. Accordingly, the formation of (IV)[link], albeit in low yield, when X = NO2, was unexpected, as it might be expected that this Schiff base would be more susceptible to hydrolysis than those having X = Me, Cl or Br. Condensation of (I) with two representative substituted benz­al­de­hydes gave the required hybrid products (V)[link] and (VI) in yields of 74 and 95%, respectively.

The new com­pounds (II)–(VI) reported here were all fully characterized by high-resolution mass spectrometry, by IR and 1H and 13C NMR spectroscopy, where the NMR spectra exhibited all of the expected signals, and by single-crystal X-ray diffraction. The crystallographic study confirmed fully the constitutions deduced from the spectra and, in addition, demonstrated the E configuration at the exocyclic C=N double bonds in (IV)–(VI), as well as providing information about the mol­ecular conformations in the solid state and about the supra­molecular assembly.

In the synthesis of the type (A) precursors (Vicentes et al., 2019[Vicentes, D. E., Rodríguez, R., Ochoa, P., Cobo, J. & Glidewell, C. (2019). Acta Cryst. C75, 1405-1416.]), the benzimidazole unit was constructed during the synthesis by condensation of an aldehyde with a py­rimi­dine-substituted benzene-1,2-di­amine. The ability to incorporate a variety of substituents into both of these components, as well as into the aldehydes used in the formation of the products (V)[link] and (VI), thus offers the possibility of forming a large library of variants containing multiple and varied substituents.

The inter­mediates (II)[link] and (III)[link] are isostructural (Table 1[link]) with the methyl analogue (I) (Vicentes et al., 2019[Vicentes, D. E., Rodríguez, R., Ochoa, P., Cobo, J. & Glidewell, C. (2019). Acta Cryst. C75, 1405-1416.]) and they crystallize as monohydrates (Figs. 1[link] and 2[link]). The product (IV)[link] crystallizes as a stoichiometric solvate with dimethyl sulfoxide (Fig. 3[link]), but the products (V)[link] and (VIa), which are isostructural, crystallize in the solvent-free form with Z′ = 2 (Figs. 4[link] and 5[link]). The second crystalline form of com­pound (VI), denoted (VIb) (Fig. 6[link]), also crystallizes as a solvate, but no coherent model for the disordered solvent could be developed from the peaks in the difference map; accordingly, the SQUEEZE procedure (Spek, 2015[Spek, A. L. (2015). Acta Cryst. C71, 9-18.]) was applied to the data set for this com­pound before the final refinements (see Section 2.2). For each of (V)[link] and (VIa), a search for possible additional crystallographic symmetry revealed none; however, the two independent mol­ecules in each of these com­pounds are related by an approximate, but noncrystallographic, twofold rotation axis (Figs. 4[link] and 5[link]).

[Figure 4]
Figure 4
The two independent components in the structure of com­pound (V)[link], showing the atom-labelling scheme and the hydro­gen bonds (drawn as dashed lines) within the selected asymmetric unit. Displacement ellipsoids are drawn at the 50% probability level.
[Figure 5]
Figure 5
The two independent components in the structure of the Z′ = 2 form of com­pound (VI), denoted (VIa), showing the atom-labelling scheme and the hydro­gen bonds (drawn as dashed lines) within the selected asymmetric unit. Displacement ellipsoids are drawn at the 50% probability level.
[Figure 6]
Figure 6
The mol­ecular structure of the Z′ = 1 form of com­pound (VI), denoted (VIb), showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level.

None of the py­rimi­dine components in com­pounds (II)–(VI) exhibits any inter­nal symmetry, as indicated by the key torsion angles (Tables 2[link] and 3[link]), and hence all are conformationally chiral (Moss, 1996[Moss, G. P. (1996). Pure Appl. Chem. 68, 2193-2222.]; Flack & Bernardinelli, 1999[Flack, H. D. & Bernardinelli, G. (1999). Acta Cryst. A55, 908-915.]), but the space groups (Table 1[link]) confirm that, in every case, equal numbers of the two conformational enanti­omers are present. For each of the products (IV)–(VI), the reference mol­ecules were selected to have a positive sign for the torsion angles Nx3—Cx4—Nx41—Cx42, where x = 1 or 2 for (V)[link] and (VIa), and x = nil for (IV)[link] and (VIb) (Table 3[link]). On this basis, each product has a negative sign for the torsion angle N3—C4—N41—C47A in (IV)[link] and (VIb) or Nx3—Cx4—Nx41—Cx47 in (V)[link] and (VIa) (see Figs. 3[link]–6[link][link][link]). All of the pro­ducts have a negative sign for the torsion angle Nx41—Cx42—Cx71—Cx72 and, in each product, the magnitudes of the corresponding torsion angles are very similar (Table 3[link]). Overall, the products (IV)–(VI) all have very similar mol­ecular structures but their crystallization characteristics are different as noted above and, as discussed below, their supra­molecular arrangements are also very different.

Table 2
Selected torsion angles (°) for inter­mediates (II)[link] and (III)

Angle (II) (III)
N3—C4—N41—C42 −59.42 (19) −59.7 (3)
N3—C4—N41—C47A 104.71 (15) 103.3 (2)
N41—C42—C71—C72 −34.0 (2) −33.9 (3)
C5—C6—O61—C61 177.09 (17) 177.67 (17)

Table 3
Selected torsion angles (°) for products (IV)–(VI)

  (IV) (V) (V) (VIa) (VIa) (VIb)
Angle x = nil x = 1 x = 2 x = 1 x = 2 x = nil
φ1 136.6 (2) 129.54 (18) 130.72 (18) 129.0 (2) 130.7 (2) 121.91 (18)
φ2 −58.1 (3) −68.6 (2) −70.2 (2) −69.3 (3) −72.1 (3) −62.7 (2)
φ3 −15.6 (3) −21.6 (3) −25.7 (2) −21.4 (3) −26.0 (3) −29.4 (3)
φ4 177.0 (2) 171.48 (17) 173.80 (18) 171.8 (2) 175.7 (2) 145.43 (18)
φ5 −4.3 (3) −2.9 (3) 3.8 (3) −4.9 (4) 0.4 (4) −3.5 (3)
φ6 −176.38 (18) −174.4 (2) 177.12 (17) 179.8 (3) 174.8 (2) −177.71 (17)
Notes: φ1 represents the torsion angle Nx3—Cx4—Nx41—Cx42; φ2 represents the torsion angles N3—C4—N41—C47A in (IV)[link] and (VIb), and Cx4—Nx41—Nx41—Cx7A in (V)[link] and (VIa) (see Figs. 3[link]–6[link][link][link]); φ3 represents the torsion angle Nx41—Cx42—Cx71—Cx72; φ4 represents the torsion angle Cx4—Cx5—Nx51—Cx57; φ5 represents the torsion angle Nx51—Cx57—Cx51—Cx52; φ6 represents the torsion angle Cx5—Cx6—Ox61—Cx61.

In the inter­mediates (II)[link] and (III)[link], the signs and magnitudes of the torsion angles N3—C4—N41—C42 and N3—C4—N41—C47A are effectively inter­changed compared with the corresponding angles in the products (IV)–(VI) (Tables 2[link] and 3[link], and Figs. 1[link]–6[link][link][link][link][link]). In effect, the orientation of the benzimidazole unit in (II)[link] and (III)[link] relative to the py­rimi­dine differs from that in the products (IV)–(VI) by a rotation of ca 180° about the C—N bond linking these two ring systems. Since the imino atom N43/Nx43 is involved in inter­mol­ecular hydro­gen bonding in every com­pound apart from (IV)[link] (Table 4[link]), it is not easy to understand these orientational differences. In each of com­pounds (II)–(VI), the meth­oxy C atom is effectively coplanar with the adjacent py­rimi­dine ring, as indicated by the torsion angles involving these C atoms (Tables 2[link] and 3[link]).

Table 4
Hydrogen bonds and short intra­molecular contacts (Å, °) for com­pounds (II)–(VI)

Cg1 and Cg2 represent the centroids of the C171–C176 and C271–C276 rings, respectively.

  D—H⋯A D—H H⋯A DA D—H⋯A
(II) N21—H21A⋯O81 0.90 (2) 2.10 (2) 2.989 (2) 171.1 (18)
  N21—H21B⋯O81i 0.86 (2) 2.094 (19) 2.8840 (18) 153.0 (18)
  N51—H51A⋯O61 0.85 (2) 2.41 (2) 2.7059 (17) 101.1 (17)
  N51—H51B⋯N41 0.90 (2) 2.571 (19) 2.888 (2) 101.5 (14)
  O81—H81A⋯N43ii 0.87 (2) 1.98 (2) 2.8506 (19) 178 (2)
  O81—H81B⋯N51iii 0.84 (2) 2.11 (2) 2.927 (2) 164 (2)
(III) N21—H21A⋯O81 0.83 (3) 2.17 (3) 2.992 (3) 172 (3)
  N21—H21B⋯O81i 0.87 (3) 2.07 (3) 2.880 (3) 154 (2)
  N51—H51A⋯O61 0.91 (3) 2.41 (3) 2.706 (2) 98 (2)
  N51—H51B⋯N41 0.88 (3) 2.56 (3) 2.885 (3) 103 (2)
  O81—H81A⋯N43ii 0.83 (3) 2.03 (3) 2.862 (3) 178 (4)
  O81—H81B⋯N51iii 0.86 (3) 2.11 (3) 2.932 (3) 159 (3)
(IV) N21—H21A⋯O81 0.89 (3) 1.94 (3) 2.826 (3) 173 (2)
  N21—H21B⋯N1iv 0.86 (3) 2.32 (3) 3.161 (3) 166 (3)
(V) N121—H12A⋯N23 0.90 (2) 2.13 (2) 3.022 (2) 171.5 (19)
  N121—H12B⋯N243v 0.92 (2) 2.18 (2) 3.062 (2) 160 (2)
  N221—H22A⋯N13 0.84 (2) 2.19 (2) 3.023 (2) 173.4 (19)
  N221—H22B⋯N143ii 0.90 (2) 2.11 (2) 2.994 (2) 169 (2)
  C146—H146⋯N151ii 0.95 2.57 3.390 (3) 145
  C176—H176⋯N21vi 0.95 2.58 3.464 (2) 154
  C155—H155⋯Cg1iv 0.95 2.60 3.465 (2) 151
  C255—H255⋯Cg2vii 0.95 2.87 3.784 (2) 163
(VIa) N121—H12A⋯N23 0.86 (3) 2.18 (3) 3.016 (3) 168 (3)
  N121—H12B⋯N243v 0.89 (3) 2.21 (3) 3.043 (3) 158 (3)
  N221—H22A⋯N13 0.78 (3) 2.23 (3) 3.012 (3) 173 (3)
  N221—H22B⋯N143ii 0.82 (3) 2.18 (3) 2.988 (3) 168 (3)
  C146—H146⋯N151ii 0.95 2.58 3.404 (4) 146
  C176—H176⋯N21vi 0.95 2.57 3.449 (3) 154
  C155—H155⋯Cg1iv 0.95 2.55 3.391 (3) 147
  C255—H255⋯Cg2vii 0.95 2.85 3.754 (3) 160
(VIb) N21—H21A⋯N3vi 0.85 (2) 2.35 (2) 3.196 (2) 175.9 (19)
  N21—H21B⋯N43viii 0.90 (2) 2.08 (2) 2.946 (2) 163.6 (19)
Symmetry codes: (i) −x + 1, −y + 1, −z; (ii) −x + 1, −y + 1, −z + 1; (iii) −x + 1, −y, −z; (iv) −x + 1, −y + 2, −z + 1; (v) −x + 1, −y + 1, −z + 2; (vi) −x, −y + 1, −z + 1; (vii) −x, −y, −z + 2.

The inter­mediates (II)[link] and (III)[link] are isostructural with (I) (Vicentes et al., 2019[Vicentes, D. E., Rodríguez, R., Ochoa, P., Cobo, J. & Glidewell, C. (2019). Acta Cryst. C75, 1405-1416.]), and thus exhibit the same pattern of supra­molecular assembly, forming complex sheets built from a combination of O—H⋯N and N—H⋯O hydro­gen bonds. No additional comment is required except to note that the structure of com­pound (III)[link] contains a fairly short inter­molecular Br⋯O contact whose dimensions are Br74⋯O61i = 3.0972 (16) Å and C74—Br74⋯O61i = 173.70 (9)° [symmetry code: (i) x, y − 1, z], so that the Br⋯O distance is shorter than the sum of the conventional van der Waals radii of 3.41 Å (Rowland & Taylor, 1996[Rowland, R. S. & Taylor, R. (1996). J. Phys. Chem. 100, 7384-7391.]). However, the conventional radii are derived assuming no directional variation in the effective van der Waals radius, but detailed database analysis (Nyburg & Faerman, 1985[Nyburg, S. C. & Faerman, C. H. (1985). Acta Cryst. B41, 274-279.]) for nonbonded contacts involving halogen atoms bonded to C atoms indicates significant angular variation, with the effective radii diminishing as the contact angle approaches 180°, as here. On this basis, the sum of the effective van der Waals radii, 3.08 Å, differs little from the distance observed here, so that this contact in com­pound (III)[link] should not be regarded as structurally significant.

For the product (IV)[link], the supra­molecular assembly is very simple: inversion-related py­rimi­dine components are linked by N—H⋯N hydro­gen bonds to form a cyclic centrosymmtric R22(8) dimer, to which inversion-related solvent mol­ecules are linked by N—H⋯O hydro­gen bonds (Fig. 7[link]). There are no direction-specific inter­actions between the four-mol­ecule aggregates of this type.

[Figure 7]
Figure 7
Part of the crystal structure of com­pound (IV)[link], showing the formation of a centrosymmetric four-mol­ecule aggregate built from N—H⋯O and N—H⋯N hydro­gen bonds, which are drawn as dashed lines. For the sake of clarity, H atoms which are not involved in the motifs shown have been omitted. Atoms marked with an asterisk (*) are at the symmetry position (−x + 1, −y + 2, −z + 1).

In the isostructural products (V)[link] and (VIa), there are eight independent hydro­gen bonds, four of the N—H⋯N type and two each of the C—H⋯N and C—H⋯π(arene) types (Table 4[link]), which together link the mol­ecules into three-dimensional framework structures. The differences in the details of the C—H⋯N and C—H⋯π(arene) hydro­gen bonds involving the two independent mol­ecules confirms the lack of additional crystallographic symmetry. In the selected asymmetric units (Figs. 4[link] and 5[link]), the two mol­ecules are linked by N—H⋯N hydro­gen bonds, and these dimeric units can be regarded as the basic building block for the three-dimensional assembly, which is readily analysed in terms of simple one-dimensional substructures (Ferguson et al., 1998a[Ferguson, G., Glidewell, C., Gregson, R. M. & Meehan, P. R. (1998a). Acta Cryst. B54, 129-138.],b[Ferguson, G., Glidewell, C., Gregson, R. M. & Meehan, P. R. (1998b). Acta Cryst. B54, 139-150.]; Gregson et al., 2000[Gregson, R. M., Glidewell, C., Ferguson, G. & Lough, A. J. (2000). Acta Cryst. B56, 39-57.]). Two N—H⋯N hydro­gen bonds, having atoms N143 and N243 as the acceptors (Table 4[link]), link the basic dimers into a ribbon of alternating R22(8) and R44(16) rings running parallel to the [101] direction (Fig. 8[link]). In the second substructure, the linking of the basic dimeric units by the two C—H⋯N hydro­gen bonds generates a ribbon of alternating R22(8) and R22(16) rings running parallel to the [100] direction (Fig. 9[link]). In the final substructure, the linkage of the dimers by two C—H⋯π(arene) hydro­gen bonds generates a chain of rings running parallel to the [12[\overline{1}]] direction (Fig. 10[link]). The combination of the chain motifs along [100], [101] and [12[\overline{1}]] suffices to generate a three-dimensional framework structure.

[Figure 8]
Figure 8
Part of the crystal structure of com­pound (V)[link], showing the formation of a ribbon of alternating R22(8) and R44(16) rings running parallel to the [101] direction. Hydrogen bonds are drawn as dashed lines and, for the sake of clarity, H atoms bonded to C atoms have all been omitted.
[Figure 9]
Figure 9
Part of the crystal structure of com­pound (V)[link], showing the formation of a ribbon of alternating R22(8) and R22(16) rings running parallel to the [100] direction. Hydrogen bonds are drawn as dashed lines and, for the sake of clarity, H atoms bonded to C atoms but not involved in the motif shown have been omitted.
[Figure 10]
Figure 10
Part of the crystal structure of com­pound (V)[link], showing the formation of a chain of rings along [12[\overline{1}]] built from N—H⋯N and C—H⋯π(arene) hydro­gen bonds, which are drawn as dashed lines. For the sake of clarity, H atoms bonded to C atoms but not involved in the motif shown have been omitted.

Two N—H⋯ N hydro­gen bonds link the mol­ecules of (VIb) into a ribbon of edge-fused centrosymmetric rings running parallel to [100], in which R22(8) rings (Etter, 1990[Etter, M. C. (1990). Acc. Chem. Res. 23, 120-126.]; Etter et al., 1990[Etter, M. C., MacDonald, J. C. & Bernstein, J. (1990). Acta Cryst. B46, 256-262.]; Bernstein et al., 1995[Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555-1573.]) centred at (n, [1 \over 2], [1 \over 2]) alternate with R44(16) rings centred at (n + [1 \over 2], [1 \over 2], [1 \over 2]) (Fig. 11[link]), where n represents an integer in each case.

[Figure 11]
Figure 11
Part of the crystal structure of form (VIb), showing the formation of a ribbon of centrosymmetric R22(8) and R44(16) rings running parallel to [100]. Hydrogen bonds are drawn as dashed lines and, for the sake of clarity, H atoms bonded to C atoms have all been omitted.

We have previously reported the structures of a wide range of multiply-substituted py­rimi­dines, but many of these carry either C-nitroso (Quesada et al., 2002[Quesada, A., Marchal, A., Melguizo, M., Nogueras, M., Sánchez, A., Low, J. N., Cannon, D., Farrell, D. M. M. & Glidewell, C. (2002). Acta Cryst. B58, 300-315.], 2004[Quesada, A., Marchal, A., Melguizo, M., Low, J. N. & Glidewell, C. (2004). Acta Cryst. B60, 76-89.]; Melguizo et al., 2003[Melguizo, M., Quesada, A., Low, J. N. & Glidewell, C. (2003). Acta Cryst. B59, 263-276.]) or C-formyl substituents (Cobo et al., 2008[Cobo, J., Trilleras, J., Quiroga, J., Marchal, A., Nogueras, M., Low, J. N. & Glidewell, C. (2008). Acta Cryst. B64, 596-609.]), whose presence is associated with highly polarized electronic structures.

4. Summary

We have developed a versatile and efficient synthesis of 5-(aryl­methyl­idene­amino)-4-(1H-benzo[d]imidazol-1-yl)py­rimi­dine hybrids based on simple starting materials and we have characterized three products and two inter­mediates spectroscopically (IR, 1H and 13C NMR, and HRMS) and have determined their mol­ecular and supra­molecular structures.

Supporting information


Computing details top

For all structures, data collection: APEX3 (Bruker, 2018); cell refinement: SAINT (Bruker, 2017); data reduction: SAINT (Bruker, 2017); program(s) used to solve structure: SHELXT2014 (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b); molecular graphics: PLATON (Spek, 2020); software used to prepare material for publication: SHELXL2014 (Sheldrick, 2015b) and PLATON (Spek, 2020).

4-[2-(4-Chlorophenyl)-1H-benzo[d]imidazol-1-yl]-6-methoxypyrimidine-2,5-diamine monohydrate (II) top
Crystal data top
C18H15ClN6O·H2OZ = 2
Mr = 384.83F(000) = 400
Triclinic, P1Dx = 1.440 Mg m3
a = 8.2156 (6) ÅMo Kα radiation, λ = 0.71073 Å
b = 11.0343 (7) ÅCell parameters from 4071 reflections
c = 11.3968 (8) Åθ = 2.3–27.5°
α = 107.980 (2)°µ = 0.24 mm1
β = 109.725 (2)°T = 100 K
γ = 98.541 (2)°Block, colourless
V = 887.43 (11) Å30.22 × 0.20 × 0.14 mm
Data collection top
Bruker D8 Venture
diffractometer
4071 independent reflections
Radiation source: INCOATEC high brilliance microfocus sealed tube3487 reflections with I > 2σ(I)
Multilayer mirror monochromatorRint = 0.053
φ and ω scansθmax = 27.5°, θmin = 2.3°
Absorption correction: multi-scan
(SADABS; Bruker, 2016)
h = 1010
Tmin = 0.907, Tmax = 0.967k = 1414
35335 measured reflectionsl = 1414
Refinement top
Refinement on F2Primary atom site location: dual
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.036H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.088 w = 1/[σ2(Fo2) + (0.0313P)2 + 0.5991P]
where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.001
4071 reflectionsΔρmax = 0.34 e Å3
263 parametersΔρmin = 0.32 e Å3
0 restraints
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N10.09847 (16)0.66440 (11)0.07593 (11)0.0146 (2)
C20.24508 (19)0.63347 (13)0.14631 (14)0.0144 (3)
N30.29687 (16)0.64478 (11)0.27522 (11)0.0139 (2)
C40.18934 (19)0.68801 (13)0.33495 (13)0.0131 (3)
C50.03441 (19)0.71774 (13)0.27416 (14)0.0142 (3)
C60.00310 (18)0.70323 (13)0.13920 (14)0.0138 (3)
N210.34981 (18)0.59262 (13)0.08236 (13)0.0179 (3)
H21A0.439 (3)0.5615 (18)0.1212 (18)0.021*
H21B0.315 (2)0.5773 (18)0.002 (2)0.021*
N410.25059 (16)0.71042 (11)0.47560 (11)0.0137 (2)
C420.28648 (18)0.62172 (13)0.53726 (14)0.0131 (3)
N430.37479 (16)0.68083 (12)0.66922 (12)0.0148 (2)
C43A0.40235 (19)0.81626 (14)0.69785 (14)0.0151 (3)
C440.4893 (2)0.92560 (15)0.82095 (15)0.0194 (3)
H440.53980.91420.90370.023*
C450.4993 (2)1.05087 (15)0.81834 (15)0.0213 (3)
H450.55821.12650.90080.026*
C460.4244 (2)1.06910 (14)0.69675 (15)0.0193 (3)
H460.43441.15670.69880.023*
C470.3363 (2)0.96213 (14)0.57387 (15)0.0171 (3)
H470.28540.97380.49130.021*
C47A0.32643 (18)0.83684 (13)0.57813 (14)0.0142 (3)
C710.22506 (19)0.47687 (13)0.46302 (14)0.0137 (3)
C720.06089 (19)0.41557 (14)0.35028 (14)0.0165 (3)
H720.01150.46810.31910.020*
C730.0028 (2)0.27831 (15)0.28340 (15)0.0191 (3)
H730.10930.23630.20720.023*
C740.1116 (2)0.20376 (14)0.32998 (15)0.0191 (3)
Cl740.03913 (6)0.03196 (4)0.24436 (4)0.02995 (12)
C750.2750 (2)0.26232 (14)0.44161 (15)0.0176 (3)
H750.34760.20950.47170.021*
C760.33098 (19)0.39939 (14)0.50867 (14)0.0147 (3)
H760.44200.44070.58610.018*
N510.08849 (18)0.74965 (13)0.33228 (13)0.0181 (3)
H51A0.147 (3)0.7990 (19)0.3019 (19)0.022*
H51B0.038 (2)0.7859 (18)0.423 (2)0.022*
O610.15313 (14)0.73322 (10)0.07799 (10)0.0176 (2)
C610.1926 (2)0.72615 (16)0.05776 (15)0.0230 (3)
H61A0.18680.64020.11280.035*
H61B0.10400.79780.05560.035*
H61C0.31370.73560.09710.035*
O810.65646 (15)0.48395 (12)0.18539 (11)0.0191 (2)
H81A0.647 (3)0.432 (2)0.228 (2)0.029*
H81B0.726 (3)0.559 (2)0.241 (2)0.029*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0177 (6)0.0123 (5)0.0124 (5)0.0041 (5)0.0044 (5)0.0049 (5)
C20.0175 (7)0.0109 (6)0.0141 (6)0.0032 (5)0.0064 (5)0.0046 (5)
N30.0165 (6)0.0129 (5)0.0122 (5)0.0045 (4)0.0053 (5)0.0052 (4)
C40.0172 (6)0.0102 (6)0.0117 (6)0.0022 (5)0.0057 (5)0.0049 (5)
C50.0167 (7)0.0119 (6)0.0155 (7)0.0041 (5)0.0078 (5)0.0059 (5)
C60.0152 (6)0.0096 (6)0.0148 (6)0.0032 (5)0.0036 (5)0.0052 (5)
N210.0215 (6)0.0230 (6)0.0129 (6)0.0111 (5)0.0080 (5)0.0083 (5)
N410.0175 (6)0.0121 (5)0.0122 (5)0.0047 (4)0.0059 (5)0.0054 (4)
C420.0137 (6)0.0153 (6)0.0146 (6)0.0063 (5)0.0076 (5)0.0081 (5)
N430.0175 (6)0.0147 (6)0.0135 (5)0.0050 (5)0.0067 (5)0.0063 (5)
C43A0.0172 (7)0.0158 (7)0.0145 (7)0.0055 (5)0.0078 (5)0.0070 (5)
C440.0234 (7)0.0192 (7)0.0125 (7)0.0046 (6)0.0053 (6)0.0051 (6)
C450.0240 (8)0.0162 (7)0.0167 (7)0.0026 (6)0.0059 (6)0.0013 (6)
C460.0230 (7)0.0137 (7)0.0218 (7)0.0046 (6)0.0103 (6)0.0064 (6)
C470.0211 (7)0.0159 (7)0.0170 (7)0.0061 (6)0.0086 (6)0.0083 (6)
C47A0.0156 (7)0.0137 (6)0.0128 (6)0.0037 (5)0.0068 (5)0.0037 (5)
C710.0171 (7)0.0144 (6)0.0141 (6)0.0049 (5)0.0096 (5)0.0071 (5)
C720.0173 (7)0.0159 (7)0.0184 (7)0.0057 (5)0.0078 (6)0.0082 (6)
C730.0184 (7)0.0177 (7)0.0184 (7)0.0014 (6)0.0066 (6)0.0058 (6)
C740.0277 (8)0.0118 (6)0.0204 (7)0.0039 (6)0.0145 (6)0.0053 (6)
Cl740.0432 (3)0.01167 (17)0.0302 (2)0.00458 (16)0.01356 (19)0.00493 (15)
C750.0238 (7)0.0167 (7)0.0217 (7)0.0105 (6)0.0143 (6)0.0116 (6)
C760.0169 (7)0.0172 (7)0.0142 (6)0.0060 (5)0.0083 (5)0.0087 (5)
N510.0200 (6)0.0212 (6)0.0176 (6)0.0103 (5)0.0098 (5)0.0089 (5)
O610.0177 (5)0.0193 (5)0.0156 (5)0.0088 (4)0.0038 (4)0.0079 (4)
C610.0255 (8)0.0255 (8)0.0163 (7)0.0108 (6)0.0027 (6)0.0105 (6)
O810.0238 (6)0.0207 (5)0.0156 (5)0.0065 (4)0.0085 (4)0.0101 (4)
Geometric parameters (Å, º) top
N1—C61.3120 (18)C46—C471.386 (2)
N1—C21.3601 (18)C46—H460.9500
C2—N31.3432 (18)C47—C47A1.3896 (19)
C2—N211.3456 (19)C47—H470.9500
N3—C41.3423 (18)C71—C761.3960 (19)
C4—C51.370 (2)C71—C721.397 (2)
C4—N411.4345 (17)C72—C731.389 (2)
C5—N511.4125 (18)C72—H720.9500
C5—C61.4141 (19)C73—C741.387 (2)
C6—O611.3412 (17)C73—H730.9500
N21—H21A0.90 (2)C74—C751.386 (2)
N21—H21B0.858 (19)C74—Cl741.7410 (15)
N41—C421.3818 (17)C75—C761.388 (2)
N41—C47A1.3941 (17)C75—H750.9500
C42—N431.3156 (18)C76—H760.9500
C42—C711.4705 (19)N51—H51A0.86 (2)
N43—C43A1.3926 (18)N51—H51B0.897 (19)
C43A—C441.399 (2)O61—C611.4437 (18)
C43A—C47A1.4004 (19)C61—H61A0.9800
C44—C451.383 (2)C61—H61B0.9800
C44—H440.9500C61—H61C0.9800
C45—C461.404 (2)O81—H81A0.87 (2)
C45—H450.9500O81—H81B0.84 (2)
C6—N1—C2116.25 (12)C46—C47—C47A116.30 (13)
N3—C2—N21117.62 (13)C46—C47—H47121.8
N3—C2—N1125.43 (13)C47A—C47—H47121.8
N21—C2—N1116.90 (13)C47—C47A—N41131.28 (13)
C4—N3—C2115.20 (12)C47—C47A—C43A123.28 (13)
N3—C4—C5125.26 (13)N41—C47A—C43A105.43 (12)
N3—C4—N41115.72 (12)C76—C71—C72119.63 (13)
C5—C4—N41118.93 (12)C76—C71—C42119.16 (13)
C4—C5—N51125.16 (13)C72—C71—C42121.19 (13)
C4—C5—C6113.70 (12)C73—C72—C71120.42 (14)
N51—C5—C6120.95 (13)C73—C72—H72119.8
N1—C6—O61121.10 (12)C71—C72—H72119.8
N1—C6—C5124.09 (13)C74—C73—C72118.78 (14)
O61—C6—C5114.82 (12)C74—C73—H73120.6
C2—N21—H21A119.5 (12)C72—C73—H73120.6
C2—N21—H21B119.7 (12)C75—C74—C73121.86 (13)
H21A—N21—H21B118.9 (17)C75—C74—Cl74119.65 (12)
C42—N41—C47A106.42 (11)C73—C74—Cl74118.49 (12)
C42—N41—C4128.98 (11)C74—C75—C76118.95 (13)
C47A—N41—C4123.01 (11)C74—C75—H75120.5
N43—C42—N41112.66 (12)C76—C75—H75120.5
N43—C42—C71124.09 (12)C75—C76—C71120.35 (13)
N41—C42—C71123.20 (12)C75—C76—H76119.8
C42—N43—C43A105.59 (11)C71—C76—H76119.8
N43—C43A—C44130.64 (13)C5—N51—H51A113.1 (12)
N43—C43A—C47A109.88 (12)C5—N51—H51B113.7 (12)
C44—C43A—C47A119.47 (13)H51A—N51—H51B109.7 (17)
C45—C44—C43A117.87 (14)C6—O61—C61116.89 (11)
C45—C44—H44121.1O61—C61—H61A109.5
C43A—C44—H44121.1O61—C61—H61B109.5
C44—C45—C46121.62 (14)H61A—C61—H61B109.5
C44—C45—H45119.2O61—C61—H61C109.5
C46—C45—H45119.2H61A—C61—H61C109.5
C47—C46—C45121.44 (14)H61B—C61—H61C109.5
C47—C46—H46119.3H81A—O81—H81B109.3 (19)
C45—C46—H46119.3
C6—N1—C2—N32.9 (2)C43A—C44—C45—C460.3 (2)
C6—N1—C2—N21179.56 (12)C44—C45—C46—C470.3 (2)
N21—C2—N3—C4178.92 (12)C45—C46—C47—C47A0.0 (2)
N1—C2—N3—C41.4 (2)C46—C47—C47A—N41179.37 (14)
C2—N3—C4—C51.2 (2)C46—C47—C47A—C43A1.0 (2)
C2—N3—C4—N41175.32 (11)C42—N41—C47A—C47177.63 (15)
N3—C4—C5—N51172.92 (13)C4—N41—C47A—C4710.8 (2)
N41—C4—C5—N5110.6 (2)C42—N41—C47A—C43A0.93 (15)
N3—C4—C5—C62.1 (2)C4—N41—C47A—C43A167.73 (12)
N41—C4—C5—C6174.41 (12)N43—C43A—C47A—C47178.30 (13)
C2—N1—C6—O61178.48 (12)C44—C43A—C47A—C471.7 (2)
C2—N1—C6—C51.9 (2)N43—C43A—C47A—N410.40 (15)
C4—C5—C6—N10.4 (2)C44—C43A—C47A—N41179.65 (13)
N51—C5—C6—N1174.85 (13)N43—C42—C71—C7635.0 (2)
C4—C5—C6—O61179.29 (12)N41—C42—C71—C76147.80 (13)
N51—C5—C6—O615.50 (19)N43—C42—C71—C72143.28 (14)
N3—C4—N41—C4259.42 (19)N41—C42—C71—C7234.0 (2)
C5—C4—N41—C42123.78 (15)C76—C71—C72—C730.1 (2)
N3—C4—N41—C47A104.21 (15)C42—C71—C72—C73178.36 (13)
C5—C4—N41—C47A72.59 (17)C71—C72—C73—C740.6 (2)
C47A—N41—C42—N431.21 (16)C72—C73—C74—C750.6 (2)
C4—N41—C42—N43166.95 (13)C72—C73—C74—Cl74179.23 (11)
C47A—N41—C42—C71178.73 (12)C73—C74—C75—C760.1 (2)
C4—N41—C42—C7115.5 (2)Cl74—C74—C75—C76179.93 (11)
N41—C42—N43—C43A0.94 (16)C74—C75—C76—C710.8 (2)
C71—C42—N43—C43A178.43 (13)C72—C71—C76—C750.8 (2)
C42—N43—C43A—C44179.63 (15)C42—C71—C76—C75179.11 (12)
C42—N43—C43A—C47A0.31 (16)N1—C6—O61—C612.57 (19)
N43—C43A—C44—C45178.73 (15)C5—C6—O61—C61177.09 (12)
C47A—C43A—C44—C451.2 (2)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N21—H21A···O810.90 (2)2.10 (2)2.989 (2)171.1 (18)
N21—H21B···O81i0.86 (2)2.094 (19)2.8840 (18)153.0 (18)
N51—H51A···O610.85 (2)2.41 (2)2.7059 (17)101.1 (17)
N51—H51B···N410.90 (2)2.571 (19)2.888 (2)101.5 (14)
O81—H81A···N43ii0.87 (2)1.98 (2)2.8506 (19)178 (2)
O81—H81B···N51iii0.84 (2)2.11 (2)2.927 (2)164 (2)
Symmetry codes: (i) x+1, y+1, z; (ii) x+1, y+1, z+1; (iii) x+1, y, z.
4-[2-(4-Bromophenyl)-1H-benzo[d]imidazol-1-yl]-6-methoxypyrimidine-2,5-diamine monohydrate (III) top
Crystal data top
C18H15BrN6O·H2OZ = 2
Mr = 429.29F(000) = 436
Triclinic, P1Dx = 1.594 Mg m3
a = 8.1975 (7) ÅMo Kα radiation, λ = 0.71073 Å
b = 11.1963 (8) ÅCell parameters from 4457 reflections
c = 11.3644 (10) Åθ = 2.3–28.3°
α = 107.938 (2)°µ = 2.33 mm1
β = 109.866 (3)°T = 100 K
γ = 98.683 (3)°Block, colourless
V = 894.39 (13) Å30.15 × 0.11 × 0.08 mm
Data collection top
Bruker D8 Venture
diffractometer
4457 independent reflections
Radiation source: INCOATEC high brilliance microfocus sealed tube3696 reflections with I > 2σ(I)
Multilayer mirror monochromatorRint = 0.073
φ and ω scansθmax = 28.3°, θmin = 2.3°
Absorption correction: multi-scan
(SADABS; Bruker, 2016)
h = 1010
Tmin = 0.719, Tmax = 0.830k = 1414
50505 measured reflectionsl = 1515
Refinement top
Refinement on F2Primary atom site location: dual
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.030H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.072 w = 1/[σ2(Fo2) + (0.0122P)2 + 1.2915P]
where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max < 0.001
4457 reflectionsΔρmax = 0.49 e Å3
263 parametersΔρmin = 0.71 e Å3
0 restraints
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N10.0997 (2)0.66298 (16)0.07575 (17)0.0148 (3)
C20.2476 (3)0.63435 (18)0.1472 (2)0.0143 (4)
N30.3002 (2)0.64670 (16)0.27695 (17)0.0143 (3)
C40.1922 (3)0.68865 (18)0.33633 (19)0.0130 (4)
C50.0354 (3)0.71608 (18)0.2743 (2)0.0140 (4)
C60.0022 (3)0.70080 (18)0.1386 (2)0.0140 (4)
N210.3529 (3)0.59482 (19)0.08384 (19)0.0188 (4)
H21A0.434 (4)0.565 (3)0.119 (3)0.023*
H21B0.322 (3)0.583 (2)0.001 (3)0.023*
N410.2535 (2)0.71161 (16)0.47749 (16)0.0133 (3)
C420.2896 (3)0.62455 (19)0.5397 (2)0.0130 (4)
N430.3796 (2)0.68330 (16)0.67223 (17)0.0149 (3)
C43A0.4081 (3)0.81718 (19)0.7007 (2)0.0151 (4)
C440.4971 (3)0.9252 (2)0.8241 (2)0.0196 (4)
H440.54860.91440.90730.024*
C450.5073 (3)1.0486 (2)0.8206 (2)0.0217 (4)
H450.56781.12350.90300.026*
C460.4307 (3)1.0656 (2)0.6987 (2)0.0204 (4)
H460.44051.15190.70060.024*
C470.3410 (3)0.9602 (2)0.5754 (2)0.0170 (4)
H470.28940.97140.49240.020*
C47A0.3309 (3)0.83645 (19)0.5803 (2)0.0142 (4)
C710.2262 (3)0.48164 (18)0.46518 (19)0.0127 (4)
C720.0605 (3)0.4223 (2)0.3526 (2)0.0162 (4)
H720.01130.47480.32230.019*
C730.0002 (3)0.2870 (2)0.2846 (2)0.0182 (4)
H730.11290.24610.20790.022*
C740.1074 (3)0.21272 (19)0.3312 (2)0.0174 (4)
Br740.02424 (4)0.02793 (2)0.23620 (3)0.02717 (7)
C750.2721 (3)0.2692 (2)0.4426 (2)0.0165 (4)
H750.34370.21640.47240.020*
C760.3309 (3)0.40459 (19)0.5102 (2)0.0146 (4)
H760.44310.44480.58750.017*
N510.0886 (3)0.74609 (18)0.3316 (2)0.0186 (4)
H51A0.148 (3)0.800 (3)0.301 (3)0.022*
H51B0.039 (3)0.780 (2)0.421 (3)0.022*
O610.15381 (19)0.72932 (14)0.07624 (14)0.0168 (3)
C610.1941 (3)0.7200 (2)0.0610 (2)0.0221 (5)
H61A0.18750.63520.11490.033*
H61B0.10600.79060.05980.033*
H61C0.31620.72800.10140.033*
O810.6558 (2)0.48275 (16)0.18500 (16)0.0193 (3)
H81A0.644 (4)0.435 (3)0.227 (3)0.029*
H81B0.728 (4)0.557 (3)0.246 (3)0.029*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0179 (9)0.0126 (8)0.0123 (8)0.0040 (6)0.0046 (7)0.0049 (6)
C20.0178 (10)0.0104 (9)0.0131 (9)0.0029 (7)0.0058 (8)0.0035 (7)
N30.0169 (8)0.0134 (8)0.0126 (8)0.0046 (6)0.0060 (7)0.0052 (6)
C40.0178 (10)0.0108 (9)0.0101 (9)0.0031 (7)0.0055 (8)0.0044 (7)
C50.0172 (10)0.0104 (9)0.0151 (9)0.0035 (7)0.0075 (8)0.0050 (7)
C60.0142 (9)0.0113 (9)0.0144 (9)0.0027 (7)0.0034 (8)0.0056 (7)
N210.0217 (10)0.0249 (9)0.0148 (9)0.0122 (8)0.0095 (8)0.0092 (7)
N410.0170 (8)0.0116 (8)0.0109 (8)0.0040 (6)0.0050 (7)0.0044 (6)
C420.0141 (9)0.0151 (9)0.0139 (9)0.0061 (7)0.0077 (8)0.0080 (7)
N430.0169 (9)0.0145 (8)0.0133 (8)0.0038 (7)0.0065 (7)0.0055 (6)
C43A0.0164 (10)0.0148 (9)0.0154 (10)0.0042 (8)0.0075 (8)0.0063 (8)
C440.0224 (11)0.0198 (10)0.0129 (10)0.0036 (8)0.0054 (8)0.0047 (8)
C450.0237 (11)0.0161 (10)0.0180 (10)0.0007 (8)0.0067 (9)0.0016 (8)
C460.0233 (11)0.0132 (9)0.0234 (11)0.0040 (8)0.0101 (9)0.0056 (8)
C470.0202 (10)0.0163 (10)0.0161 (10)0.0054 (8)0.0076 (8)0.0080 (8)
C47A0.0154 (10)0.0131 (9)0.0131 (9)0.0028 (7)0.0069 (8)0.0032 (7)
C710.0159 (9)0.0128 (9)0.0119 (9)0.0040 (7)0.0075 (8)0.0059 (7)
C720.0175 (10)0.0159 (9)0.0170 (10)0.0058 (8)0.0070 (8)0.0081 (8)
C730.0165 (10)0.0165 (10)0.0172 (10)0.0018 (8)0.0051 (8)0.0044 (8)
C740.0243 (11)0.0105 (9)0.0210 (10)0.0041 (8)0.0136 (9)0.0062 (8)
Br740.03690 (14)0.01234 (10)0.02847 (13)0.00458 (9)0.01274 (10)0.00493 (8)
C750.0207 (10)0.0160 (10)0.0203 (10)0.0093 (8)0.0120 (9)0.0106 (8)
C760.0162 (10)0.0171 (9)0.0131 (9)0.0052 (8)0.0078 (8)0.0072 (8)
N510.0194 (9)0.0233 (9)0.0188 (9)0.0106 (8)0.0110 (8)0.0099 (8)
O610.0163 (7)0.0198 (7)0.0144 (7)0.0084 (6)0.0040 (6)0.0077 (6)
C610.0256 (12)0.0240 (11)0.0144 (10)0.0092 (9)0.0027 (9)0.0096 (9)
O810.0223 (8)0.0224 (8)0.0159 (7)0.0065 (6)0.0083 (6)0.0104 (6)
Geometric parameters (Å, º) top
N1—C61.309 (3)C46—C471.384 (3)
N1—C21.357 (3)C46—H460.9500
C2—N211.342 (3)C47—C47A1.395 (3)
C2—N31.343 (2)C47—H470.9500
N3—C41.340 (3)C71—C761.393 (3)
C4—C51.372 (3)C71—C721.395 (3)
C4—N411.432 (2)C72—C731.390 (3)
C5—N511.411 (3)C72—H720.9500
C5—C61.414 (3)C73—C741.387 (3)
C6—O611.345 (2)C73—H730.9500
N21—H21A0.82 (3)C74—C751.383 (3)
N21—H21B0.87 (3)C74—Br741.900 (2)
N41—C421.381 (2)C75—C761.389 (3)
N41—C47A1.394 (2)C75—H750.9500
C42—N431.316 (3)C76—H760.9500
C42—C711.471 (3)N51—H51A0.90 (3)
N43—C43A1.396 (3)N51—H51B0.88 (3)
C43A—C47A1.398 (3)O61—C611.447 (2)
C43A—C441.398 (3)C61—H61A0.9800
C44—C451.385 (3)C61—H61B0.9800
C44—H440.9500C61—H61C0.9800
C45—C461.398 (3)O81—H81A0.84 (3)
C45—H450.9500O81—H81B0.86 (3)
C6—N1—C2116.25 (17)C46—C47—C47A115.99 (19)
N21—C2—N3117.62 (19)C46—C47—H47122.0
N21—C2—N1116.90 (18)C47A—C47—H47122.0
N3—C2—N1125.43 (18)N41—C47A—C47131.07 (19)
C4—N3—C2115.27 (17)N41—C47A—C43A105.73 (17)
N3—C4—C5125.21 (18)C47—C47A—C43A123.17 (18)
N3—C4—N41115.91 (17)C76—C71—C72119.76 (18)
C5—C4—N41118.81 (17)C76—C71—C42119.38 (18)
C4—C5—N51125.19 (18)C72—C71—C42120.84 (18)
C4—C5—C6113.49 (18)C73—C72—C71120.43 (19)
N51—C5—C6121.11 (18)C73—C72—H72119.8
N1—C6—O61121.09 (18)C71—C72—H72119.8
N1—C6—C5124.27 (18)C74—C73—C72118.57 (19)
O61—C6—C5114.64 (18)C74—C73—H73120.7
C2—N21—H21A119.5 (18)C72—C73—H73120.7
C2—N21—H21B120.6 (17)C75—C74—C73122.08 (19)
H21A—N21—H21B118 (2)C75—C74—Br74119.74 (15)
C42—N41—C47A106.32 (16)C73—C74—Br74118.17 (16)
C42—N41—C4128.77 (16)C74—C75—C76118.84 (19)
C47A—N41—C4123.21 (16)C74—C75—H75120.6
N43—C42—N41112.68 (17)C76—C75—H75120.6
N43—C42—C71124.25 (18)C75—C76—C71120.32 (19)
N41—C42—C71123.01 (17)C75—C76—H76119.8
C42—N43—C43A105.60 (16)C71—C76—H76119.8
N43—C43A—C47A109.65 (17)C5—N51—H51A112.7 (16)
N43—C43A—C44130.60 (19)C5—N51—H51B113.7 (17)
C47A—C43A—C44119.74 (19)H51A—N51—H51B109 (2)
C45—C44—C43A117.6 (2)C6—O61—C61116.63 (16)
C45—C44—H44121.2O61—C61—H61A109.5
C43A—C44—H44121.2O61—C61—H61B109.5
C44—C45—C46121.7 (2)H61A—C61—H61B109.5
C44—C45—H45119.2O61—C61—H61C109.5
C46—C45—H45119.2H61A—C61—H61C109.5
C47—C46—C45121.8 (2)H61B—C61—H61C109.5
C47—C46—H46119.1H81A—O81—H81B106 (3)
C45—C46—H46119.1
C6—N1—C2—N21179.68 (18)C43A—C44—C45—C460.5 (3)
C6—N1—C2—N32.8 (3)C44—C45—C46—C470.1 (4)
N21—C2—N3—C4178.87 (18)C45—C46—C47—C47A0.4 (3)
N1—C2—N3—C41.3 (3)C42—N41—C47A—C47177.7 (2)
C2—N3—C4—C51.4 (3)C4—N41—C47A—C4711.4 (3)
C2—N3—C4—N41175.54 (16)C42—N41—C47A—C43A0.9 (2)
N3—C4—C5—N51172.53 (19)C4—N41—C47A—C43A167.15 (18)
N41—C4—C5—N5110.6 (3)C46—C47—C47A—N41179.4 (2)
N3—C4—C5—C62.3 (3)C46—C47—C47A—C43A1.1 (3)
N41—C4—C5—C6174.54 (16)N43—C43A—C47A—N410.3 (2)
C2—N1—C6—O61178.81 (17)C44—C43A—C47A—N41179.81 (18)
C2—N1—C6—C51.6 (3)N43—C43A—C47A—C47178.35 (19)
C4—C5—C6—N10.7 (3)C44—C43A—C47A—C471.5 (3)
N51—C5—C6—N1174.39 (19)N43—C42—C71—C7635.0 (3)
C4—C5—C6—O61178.90 (17)N41—C42—C71—C76147.94 (19)
N51—C5—C6—O616.0 (3)N43—C42—C71—C72143.2 (2)
N3—C4—N41—C4259.7 (3)N41—C42—C71—C7233.9 (3)
C5—C4—N41—C42123.2 (2)C76—C71—C72—C730.4 (3)
N3—C4—N41—C47A103.3 (2)C42—C71—C72—C73178.57 (18)
C5—C4—N41—C47A73.8 (3)C71—C72—C73—C740.0 (3)
C47A—N41—C42—N431.2 (2)C72—C73—C74—C750.1 (3)
C4—N41—C42—N43166.42 (19)C72—C73—C74—Br74179.32 (15)
C47A—N41—C42—C71178.53 (18)C73—C74—C75—C760.3 (3)
C4—N41—C42—C7116.2 (3)Br74—C74—C75—C76179.64 (15)
N41—C42—N43—C43A0.9 (2)C74—C75—C76—C710.7 (3)
C71—C42—N43—C43A178.26 (18)C72—C71—C76—C750.8 (3)
C42—N43—C43A—C47A0.3 (2)C42—C71—C76—C75178.94 (18)
C42—N43—C43A—C44179.5 (2)N1—C6—O61—C611.9 (3)
N43—C43A—C44—C45178.7 (2)C5—C6—O61—C61177.67 (17)
C47A—C43A—C44—C451.1 (3)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N21—H21A···O810.83 (3)2.17 (3)2.992 (3)172 (3)
N21—H21B···O81i0.87 (3)2.07 (3)2.880 (3)154 (2)
N51—H51A···O610.91 (3)2.41 (3)2.706 (2)98 (2)
N51—H51B···N410.88 (3)2.56 (3)2.885 (3)103 (2)
O81—H81A···N43ii0.83 (3)2.03 (3)2.862 (3)178 (4)
O81—H81B···N51iii0.86 (3)2.11 (3)2.932 (3)159 (3)
Symmetry codes: (i) x+1, y+1, z; (ii) x+1, y+1, z+1; (iii) x+1, y, z.
(E)-4-Methoxy-5-[(4-nitrobenzylidene)amino]-6-[2-(4-nitrophenyl)-1H-benzo[d]imidazol-1-yl]pyrimidin-2-amine dimethyl sulfoxide monosolvate (IV) top
Crystal data top
C25H18N8O5·C2H6OSZ = 2
Mr = 588.60F(000) = 612
Triclinic, P1Dx = 1.470 Mg m3
a = 9.8192 (8) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.2765 (7) ÅCell parameters from 6115 reflections
c = 14.4096 (11) Åθ = 2.2–27.5°
α = 71.718 (2)°µ = 0.18 mm1
β = 74.872 (3)°T = 100 K
γ = 88.786 (3)°Block, yellow
V = 1329.87 (18) Å30.19 × 0.15 × 0.10 mm
Data collection top
Bruker D8 Venture
diffractometer
6115 independent reflections
Radiation source: INCOATEC high brilliance microfocus sealed tube4641 reflections with I > 2σ(I)
Multilayer mirror monochromatorRint = 0.112
φ and ω scansθmax = 27.5°, θmin = 2.2°
Absorption correction: multi-scan
(SADABS; Bruker, 2016)
h = 1212
Tmin = 0.905, Tmax = 0.982k = 1313
66738 measured reflectionsl = 1818
Refinement top
Refinement on F2Primary atom site location: dual
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.050H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.108 w = 1/[σ2(Fo2) + (0.0268P)2 + 1.3248P]
where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
6115 reflectionsΔρmax = 0.32 e Å3
388 parametersΔρmin = 0.35 e Å3
0 restraints
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N10.43253 (18)0.79071 (17)0.54652 (13)0.0170 (4)
C20.5173 (2)0.7901 (2)0.60757 (15)0.0171 (4)
N30.54460 (18)0.67795 (17)0.67807 (13)0.0176 (4)
C40.4885 (2)0.5594 (2)0.68216 (15)0.0168 (4)
C50.4052 (2)0.5425 (2)0.62107 (15)0.0171 (4)
C60.3791 (2)0.6694 (2)0.55354 (15)0.0167 (4)
N210.5784 (2)0.90925 (18)0.59978 (15)0.0201 (4)
H21A0.639 (3)0.907 (2)0.6365 (19)0.024*
H21B0.567 (3)0.984 (3)0.5548 (19)0.024*
N410.52857 (18)0.44323 (17)0.75244 (13)0.0172 (4)
C420.4490 (2)0.3276 (2)0.82333 (16)0.0186 (4)
N430.52775 (19)0.22943 (17)0.85929 (14)0.0205 (4)
C43A0.6665 (2)0.2806 (2)0.81085 (16)0.0197 (4)
C440.7926 (2)0.2186 (2)0.81965 (16)0.0214 (5)
H440.79200.12750.86350.026*
C450.9176 (2)0.2939 (2)0.76256 (17)0.0243 (5)
H451.00460.25340.76680.029*
C460.9196 (2)0.4295 (2)0.69810 (17)0.0244 (5)
H461.00780.47910.66080.029*
C470.7960 (2)0.4917 (2)0.68806 (17)0.0215 (4)
H470.79700.58290.64440.026*
C47A0.6703 (2)0.4149 (2)0.74473 (16)0.0178 (4)
C710.2950 (2)0.3171 (2)0.86662 (16)0.0187 (4)
C720.2132 (2)0.4310 (2)0.85996 (16)0.0197 (4)
H720.25630.52020.82130.024*
C730.0705 (2)0.4157 (2)0.90880 (16)0.0212 (4)
H730.01470.49290.90290.025*
C740.0107 (2)0.2847 (2)0.96674 (16)0.0208 (4)
C750.0889 (2)0.1703 (2)0.97656 (17)0.0224 (5)
H750.04590.08201.01770.027*
C760.2306 (2)0.1865 (2)0.92565 (17)0.0220 (5)
H760.28510.10840.93070.026*
N740.1415 (2)0.26614 (19)1.01637 (14)0.0245 (4)
O7410.20964 (18)0.36831 (17)1.01215 (14)0.0336 (4)
O7420.19425 (18)0.14756 (17)1.05937 (13)0.0315 (4)
N510.36085 (19)0.40863 (17)0.63256 (13)0.0193 (4)
C570.2796 (2)0.3757 (2)0.58567 (16)0.0186 (4)
H570.24740.44480.53620.022*
C510.2365 (2)0.2300 (2)0.60895 (16)0.0177 (4)
C520.2897 (2)0.1258 (2)0.67645 (16)0.0198 (4)
H520.35900.14820.70530.024*
C530.2422 (2)0.0098 (2)0.70147 (17)0.0214 (4)
H530.27790.08100.74740.026*
C540.1414 (2)0.0392 (2)0.65808 (16)0.0199 (4)
C550.0860 (2)0.0609 (2)0.59078 (17)0.0215 (4)
H550.01710.03760.56200.026*
C560.1345 (2)0.1960 (2)0.56703 (16)0.0204 (4)
H560.09780.26680.52150.024*
N540.0912 (2)0.18335 (18)0.68409 (15)0.0256 (4)
O5410.1070 (2)0.26502 (17)0.76353 (15)0.0404 (5)
O5420.03663 (18)0.21507 (16)0.62613 (13)0.0311 (4)
O610.29795 (16)0.66244 (14)0.49389 (11)0.0193 (3)
C610.2767 (2)0.7888 (2)0.42043 (16)0.0203 (4)
H61A0.23490.85370.45550.030*
H61B0.21300.76960.38340.030*
H61C0.36780.82880.37260.030*
S810.72769 (6)0.86689 (6)0.82975 (4)0.02445 (14)
O810.76558 (17)0.92433 (16)0.71601 (12)0.0258 (4)
C810.7307 (3)0.6842 (2)0.86096 (19)0.0298 (5)
H81A0.66920.65130.82810.045*
H81B0.69690.64160.93470.045*
H81C0.82760.65970.83720.045*
C820.5417 (3)0.8747 (3)0.8733 (2)0.0361 (6)
H82A0.51790.97090.85640.054*
H82B0.51100.83080.94710.054*
H82C0.49370.82660.84060.054*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0197 (9)0.0135 (8)0.0175 (9)0.0018 (7)0.0077 (7)0.0026 (7)
C20.0173 (10)0.0158 (9)0.0176 (10)0.0012 (8)0.0056 (8)0.0038 (8)
N30.0193 (9)0.0146 (8)0.0182 (9)0.0000 (7)0.0071 (7)0.0023 (7)
C40.0173 (10)0.0143 (9)0.0169 (10)0.0024 (8)0.0041 (8)0.0027 (8)
C50.0190 (10)0.0143 (9)0.0167 (10)0.0003 (8)0.0052 (8)0.0029 (8)
C60.0165 (10)0.0172 (10)0.0160 (10)0.0016 (8)0.0037 (8)0.0049 (8)
N210.0245 (10)0.0142 (8)0.0227 (10)0.0008 (7)0.0133 (8)0.0015 (7)
N410.0191 (9)0.0135 (8)0.0182 (9)0.0002 (7)0.0084 (7)0.0013 (7)
C420.0255 (11)0.0134 (9)0.0178 (10)0.0005 (8)0.0096 (9)0.0028 (8)
N430.0258 (10)0.0147 (8)0.0223 (9)0.0030 (7)0.0109 (8)0.0043 (7)
C43A0.0249 (11)0.0191 (10)0.0179 (10)0.0022 (8)0.0089 (9)0.0074 (8)
C440.0292 (12)0.0186 (10)0.0217 (11)0.0081 (9)0.0145 (9)0.0079 (9)
C450.0248 (12)0.0295 (12)0.0259 (12)0.0112 (9)0.0128 (10)0.0146 (10)
C460.0217 (11)0.0290 (12)0.0241 (12)0.0018 (9)0.0068 (9)0.0103 (10)
C470.0228 (11)0.0196 (10)0.0214 (11)0.0003 (8)0.0064 (9)0.0051 (9)
C47A0.0220 (11)0.0167 (10)0.0174 (10)0.0036 (8)0.0097 (8)0.0057 (8)
C710.0231 (11)0.0175 (10)0.0172 (10)0.0003 (8)0.0091 (9)0.0048 (8)
C720.0246 (11)0.0157 (10)0.0182 (10)0.0011 (8)0.0071 (9)0.0034 (8)
C730.0266 (12)0.0177 (10)0.0210 (11)0.0024 (8)0.0090 (9)0.0064 (9)
C740.0212 (11)0.0248 (11)0.0160 (10)0.0031 (9)0.0055 (8)0.0053 (9)
C750.0266 (12)0.0168 (10)0.0223 (11)0.0048 (9)0.0088 (9)0.0019 (9)
C760.0279 (12)0.0155 (10)0.0227 (11)0.0016 (9)0.0108 (9)0.0029 (8)
N740.0271 (10)0.0243 (10)0.0211 (10)0.0044 (8)0.0056 (8)0.0062 (8)
O7410.0274 (9)0.0307 (9)0.0418 (11)0.0026 (7)0.0044 (8)0.0142 (8)
O7420.0306 (9)0.0275 (9)0.0296 (9)0.0085 (7)0.0037 (7)0.0026 (7)
N510.0242 (10)0.0139 (8)0.0202 (9)0.0001 (7)0.0072 (8)0.0047 (7)
C570.0209 (11)0.0144 (9)0.0192 (10)0.0023 (8)0.0062 (9)0.0032 (8)
C510.0176 (10)0.0151 (9)0.0185 (10)0.0006 (8)0.0021 (8)0.0047 (8)
C520.0204 (11)0.0180 (10)0.0208 (11)0.0004 (8)0.0062 (9)0.0053 (8)
C530.0227 (11)0.0161 (10)0.0217 (11)0.0020 (8)0.0043 (9)0.0025 (8)
C540.0197 (11)0.0148 (10)0.0222 (11)0.0018 (8)0.0005 (9)0.0060 (8)
C550.0222 (11)0.0202 (10)0.0240 (11)0.0011 (8)0.0072 (9)0.0086 (9)
C560.0235 (11)0.0164 (10)0.0211 (11)0.0015 (8)0.0073 (9)0.0047 (8)
N540.0253 (10)0.0171 (9)0.0317 (11)0.0001 (7)0.0028 (8)0.0078 (8)
O5410.0519 (12)0.0171 (8)0.0451 (11)0.0041 (8)0.0189 (9)0.0051 (8)
O5420.0340 (10)0.0223 (8)0.0384 (10)0.0052 (7)0.0059 (8)0.0143 (8)
O610.0255 (8)0.0135 (7)0.0210 (8)0.0011 (6)0.0137 (6)0.0026 (6)
C610.0254 (11)0.0166 (10)0.0199 (11)0.0018 (8)0.0127 (9)0.0017 (8)
S810.0335 (3)0.0192 (3)0.0239 (3)0.0015 (2)0.0158 (2)0.0045 (2)
O810.0261 (9)0.0257 (8)0.0239 (8)0.0022 (7)0.0107 (7)0.0018 (7)
C810.0421 (15)0.0194 (11)0.0292 (13)0.0045 (10)0.0156 (11)0.0049 (10)
C820.0415 (15)0.0309 (13)0.0273 (13)0.0106 (11)0.0014 (11)0.0043 (11)
Geometric parameters (Å, º) top
N1—C61.327 (3)C75—C761.380 (3)
N1—C21.358 (3)C75—H750.9500
C2—N211.335 (3)C76—H760.9500
C2—N31.352 (3)N74—O7411.227 (2)
N3—C41.325 (3)N74—O7421.234 (2)
C4—C51.398 (3)N51—C571.282 (3)
C4—N411.427 (2)C57—C511.473 (3)
C5—N511.397 (2)C57—H570.9500
C5—C61.426 (3)C51—C561.397 (3)
C6—O611.333 (2)C51—C521.398 (3)
N21—H21A0.89 (3)C52—C531.383 (3)
N21—H21B0.86 (3)C52—H520.9500
N41—C421.388 (3)C53—C541.384 (3)
N41—C47A1.398 (3)C53—H530.9500
C42—N431.316 (3)C54—C551.386 (3)
C42—C711.470 (3)C54—N541.471 (3)
N43—C43A1.387 (3)C55—C561.385 (3)
C43A—C441.398 (3)C55—H550.9500
C43A—C47A1.404 (3)C56—H560.9500
C44—C451.377 (3)N54—O5421.226 (2)
C44—H440.9500N54—O5411.234 (3)
C45—C461.409 (3)O61—C611.446 (2)
C45—H450.9500C61—H61A0.9800
C46—C471.380 (3)C61—H61B0.9800
C46—H460.9500C61—H61C0.9800
C47—C47A1.388 (3)S81—O811.5025 (16)
C47—H470.9500S81—C821.779 (3)
C71—C721.398 (3)S81—C811.790 (2)
C71—C761.401 (3)C81—H81A0.9800
C72—C731.381 (3)C81—H81B0.9800
C72—H720.9500C81—H81C0.9800
C73—C741.388 (3)C82—H82A0.9800
C73—H730.9500C82—H82B0.9800
C74—C751.380 (3)C82—H82C0.9800
C74—N741.467 (3)
C6—N1—C2116.51 (17)C76—C75—H75120.6
N21—C2—N3115.97 (18)C74—C75—H75120.6
N21—C2—N1118.54 (18)C75—C76—C71120.7 (2)
N3—C2—N1125.48 (18)C75—C76—H76119.7
C4—N3—C2115.50 (17)C71—C76—H76119.7
N3—C4—C5125.72 (18)O741—N74—O742123.6 (2)
N3—C4—N41113.45 (17)O741—N74—C74118.69 (18)
C5—C4—N41120.70 (17)O742—N74—C74117.68 (19)
N51—C5—C4117.80 (18)C57—N51—C5125.60 (18)
N51—C5—C6129.27 (19)N51—C57—C51119.58 (19)
C4—C5—C6112.93 (18)N51—C57—H57120.2
N1—C6—O61119.53 (18)C51—C57—H57120.2
N1—C6—C5123.71 (19)C56—C51—C52119.34 (19)
O61—C6—C5116.75 (17)C56—C51—C57119.24 (18)
C2—N21—H21A117.7 (16)C52—C51—C57121.32 (19)
C2—N21—H21B119.8 (16)C53—C52—C51120.4 (2)
H21A—N21—H21B122 (2)C53—C52—H52119.8
C42—N41—C47A106.25 (16)C51—C52—H52119.8
C42—N41—C4130.80 (17)C52—C53—C54118.4 (2)
C47A—N41—C4121.77 (17)C52—C53—H53120.8
N43—C42—N41112.70 (19)C54—C53—H53120.8
N43—C42—C71121.14 (19)C53—C54—C55123.04 (19)
N41—C42—C71125.67 (18)C53—C54—N54118.58 (19)
C42—N43—C43A105.57 (17)C55—C54—N54118.37 (19)
N43—C43A—C44129.7 (2)C56—C55—C54117.6 (2)
N43—C43A—C47A110.35 (18)C56—C55—H55121.2
C44—C43A—C47A120.0 (2)C54—C55—H55121.2
C45—C44—C43A117.7 (2)C55—C56—C51121.1 (2)
C45—C44—H44121.1C55—C56—H56119.4
C43A—C44—H44121.1C51—C56—H56119.4
C44—C45—C46121.6 (2)O542—N54—O541124.11 (19)
C44—C45—H45119.2O542—N54—C54118.45 (19)
C46—C45—H45119.2O541—N54—C54117.44 (19)
C47—C46—C45121.3 (2)C6—O61—C61117.90 (15)
C47—C46—H46119.4O61—C61—H61A109.5
C45—C46—H46119.4O61—C61—H61B109.5
C46—C47—C47A116.9 (2)H61A—C61—H61B109.5
C46—C47—H47121.5O61—C61—H61C109.5
C47A—C47—H47121.5H61A—C61—H61C109.5
C47—C47A—N41132.44 (19)H61B—C61—H61C109.5
C47—C47A—C43A122.4 (2)O81—S81—C82106.67 (11)
N41—C47A—C43A105.11 (18)O81—S81—C81106.62 (10)
C72—C71—C76118.9 (2)C82—S81—C8197.53 (12)
C72—C71—C42123.44 (19)S81—C81—H81A109.5
C76—C71—C42117.34 (19)S81—C81—H81B109.5
C73—C72—C71120.92 (19)H81A—C81—H81B109.5
C73—C72—H72119.5S81—C81—H81C109.5
C71—C72—H72119.5H81A—C81—H81C109.5
C72—C73—C74118.4 (2)H81B—C81—H81C109.5
C72—C73—H73120.8S81—C82—H82A109.5
C74—C73—H73120.8S81—C82—H82B109.5
C75—C74—C73122.2 (2)H82A—C82—H82B109.5
C75—C74—N74118.73 (19)S81—C82—H82C109.5
C73—C74—N74119.1 (2)H82A—C82—H82C109.5
C76—C75—C74118.9 (2)H82B—C82—H82C109.5
C6—N1—C2—N21177.04 (19)N43—C43A—C47A—N411.4 (2)
C6—N1—C2—N34.0 (3)C44—C43A—C47A—N41178.52 (18)
N21—C2—N3—C4177.16 (19)N43—C42—C71—C72155.8 (2)
N1—C2—N3—C43.8 (3)N41—C42—C71—C7215.6 (3)
C2—N3—C4—C50.3 (3)N43—C42—C71—C7617.9 (3)
C2—N3—C4—N41175.71 (18)N41—C42—C71—C76170.8 (2)
N3—C4—C5—N51176.8 (2)C76—C71—C72—C731.4 (3)
N41—C4—C5—N511.1 (3)C42—C71—C72—C73174.91 (19)
N3—C4—C5—C62.5 (3)C71—C72—C73—C741.5 (3)
N41—C4—C5—C6178.27 (18)C72—C73—C74—C750.2 (3)
C2—N1—C6—O61178.33 (18)C72—C73—C74—N74178.02 (18)
C2—N1—C6—C50.6 (3)C73—C74—C75—C761.2 (3)
N51—C5—C6—N1176.9 (2)N74—C74—C75—C76176.64 (19)
C4—C5—C6—N12.4 (3)C74—C75—C76—C711.3 (3)
N51—C5—C6—O612.0 (3)C72—C71—C76—C750.1 (3)
C4—C5—C6—O61178.70 (18)C42—C71—C76—C75173.87 (19)
N3—C4—N41—C42136.2 (2)C75—C74—N74—O741176.2 (2)
C5—C4—N41—C4247.6 (3)C73—C74—N74—O7415.9 (3)
N3—C4—N41—C47A58.1 (3)C75—C74—N74—O7424.6 (3)
C5—C4—N41—C47A118.1 (2)C73—C74—N74—O742173.31 (19)
C47A—N41—C42—N430.9 (2)C4—C5—N51—C57177.0 (2)
C4—N41—C42—N43166.5 (2)C6—C5—N51—C573.8 (4)
C47A—N41—C42—C71171.04 (19)C5—N51—C57—C51177.24 (19)
C4—N41—C42—C7121.6 (3)N51—C57—C51—C56172.2 (2)
N41—C42—N43—C43A0.1 (2)N51—C57—C51—C524.3 (3)
C71—C42—N43—C43A172.31 (18)C56—C51—C52—C530.1 (3)
C42—N43—C43A—C44179.1 (2)C57—C51—C52—C53176.5 (2)
C42—N43—C43A—C47A0.8 (2)C51—C52—C53—C540.1 (3)
N43—C43A—C44—C45179.5 (2)C52—C53—C54—C550.0 (3)
C47A—C43A—C44—C450.6 (3)C52—C53—C54—N54179.67 (19)
C43A—C44—C45—C460.7 (3)C53—C54—C55—C560.2 (3)
C44—C45—C46—C471.2 (3)N54—C54—C55—C56179.93 (19)
C45—C46—C47—C47A0.4 (3)C54—C55—C56—C510.4 (3)
C46—C47—C47A—N41179.0 (2)C52—C51—C56—C550.3 (3)
C46—C47—C47A—C43A0.9 (3)C57—C51—C56—C55176.9 (2)
C42—N41—C47A—C47178.7 (2)C53—C54—N54—O542158.7 (2)
C4—N41—C47A—C4712.5 (3)C55—C54—N54—O54221.0 (3)
C42—N41—C47A—C43A1.4 (2)C53—C54—N54—O54121.2 (3)
C4—N41—C47A—C43A167.45 (18)C55—C54—N54—O541159.1 (2)
N43—C43A—C47A—C47178.65 (19)N1—C6—O61—C612.6 (3)
C44—C43A—C47A—C471.4 (3)C5—C6—O61—C61176.38 (18)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N21—H21A···O810.89 (3)1.94 (3)2.826 (3)173 (2)
N21—H21B···N1i0.86 (3)2.32 (3)3.161 (3)166 (3)
Symmetry code: (i) x+1, y+2, z+1.
(E)-4-Methoxy-5-[(4-methylbenzylidene)amino]-6-[2-(4-methylphenyl)-1H-benzo[d]imidazol-1-yl]pyrimidin-2-amine (V) top
Crystal data top
C27H24N6OZ = 4
Mr = 448.52F(000) = 944
Triclinic, P1Dx = 1.256 Mg m3
a = 10.2203 (15) ÅMo Kα radiation, λ = 0.71073 Å
b = 14.821 (2) ÅCell parameters from 10869 reflections
c = 16.594 (2) Åθ = 2.1–27.5°
α = 99.616 (5)°µ = 0.08 mm1
β = 92.153 (6)°T = 100 K
γ = 106.083 (5)°Block, yellow
V = 2371.9 (6) Å30.25 × 0.22 × 0.12 mm
Data collection top
Bruker D8 Venture
diffractometer
10869 independent reflections
Radiation source: INCOATEC high brilliance microfocus sealed tube8351 reflections with I > 2σ(I)
Multilayer mirror monochromatorRint = 0.074
φ and ω scansθmax = 27.5°, θmin = 2.1°
Absorption correction: multi-scan
(SADABS; Bruker, 2016)
h = 1313
Tmin = 0.948, Tmax = 0.990k = 1919
116861 measured reflectionsl = 2121
Refinement top
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.050H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.127 w = 1/[σ2(Fo2) + (0.0394P)2 + 1.7991P]
where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
10869 reflectionsΔρmax = 0.50 e Å3
631 parametersΔρmin = 0.23 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N110.50690 (15)0.73334 (10)0.78308 (9)0.0235 (3)
C120.41049 (17)0.64788 (12)0.77283 (10)0.0220 (3)
N130.32676 (14)0.60663 (10)0.70368 (9)0.0221 (3)
C140.34780 (16)0.65291 (11)0.64107 (10)0.0194 (3)
C150.44595 (17)0.73959 (11)0.64190 (10)0.0196 (3)
C160.52296 (17)0.77636 (12)0.71918 (10)0.0216 (3)
N1210.39417 (17)0.60051 (12)0.83545 (10)0.0292 (4)
H12A0.336 (2)0.5409 (16)0.8253 (13)0.035*
H12B0.447 (2)0.6247 (16)0.8846 (14)0.035*
N1410.26366 (14)0.60399 (10)0.56760 (8)0.0201 (3)
C1420.18371 (17)0.63770 (12)0.51732 (10)0.0218 (3)
N1430.14892 (16)0.58272 (10)0.44472 (9)0.0264 (3)
C13A0.20799 (18)0.50864 (12)0.44582 (11)0.0255 (4)
C1440.2046 (2)0.43054 (14)0.38490 (12)0.0339 (4)
H1440.15850.42190.33220.041*
C1450.2707 (2)0.36639 (14)0.40390 (13)0.0366 (5)
H1450.26890.31240.36350.044*
C1460.3402 (2)0.37834 (14)0.48092 (13)0.0346 (4)
H1460.38400.33220.49160.041*
C1470.34655 (19)0.45565 (13)0.54167 (12)0.0283 (4)
H1470.39450.46460.59390.034*
C17A0.27898 (17)0.51984 (12)0.52247 (10)0.0224 (3)
C1710.12992 (17)0.71857 (12)0.54521 (11)0.0229 (3)
C1720.11523 (17)0.74861 (12)0.62793 (11)0.0245 (4)
H1720.14760.71970.66850.029*
C1730.05367 (19)0.82034 (14)0.65129 (12)0.0304 (4)
H1730.04520.84020.70780.036*
C1740.0039 (2)0.86388 (14)0.59347 (13)0.0331 (4)
C1750.0179 (2)0.83314 (13)0.51137 (13)0.0338 (4)
H1750.01610.86130.47090.041*
C1760.08036 (19)0.76234 (13)0.48710 (12)0.0293 (4)
H1760.08960.74330.43050.035*
C1770.0609 (3)0.94266 (17)0.61941 (17)0.0509 (6)
H17A0.09110.96340.57070.076*
H17B0.00600.99670.65460.076*
H17C0.13970.91910.64990.076*
N1510.46591 (14)0.77190 (10)0.56732 (8)0.0213 (3)
C1570.54002 (18)0.85420 (12)0.56066 (11)0.0254 (4)
H1570.58140.89910.60890.031*
C1510.56309 (18)0.88143 (12)0.48010 (11)0.0244 (4)
C1520.51068 (19)0.81802 (13)0.40670 (11)0.0272 (4)
H1520.45970.75400.40760.033*
C1530.5329 (2)0.84816 (14)0.33271 (11)0.0303 (4)
H1530.49830.80390.28310.036*
C1540.60487 (19)0.94190 (14)0.32911 (11)0.0291 (4)
C1550.65782 (19)1.00461 (14)0.40212 (12)0.0307 (4)
H1550.70771.06880.40110.037*
C1560.63848 (19)0.97428 (14)0.47662 (12)0.0304 (4)
H1560.67741.01770.52610.037*
C1580.6233 (2)0.97494 (18)0.24782 (13)0.0430 (5)
H18A0.55791.01050.23890.064*
H18B0.60740.91930.20350.064*
H18C0.71671.01640.24840.064*
O1610.62184 (13)0.85958 (9)0.72573 (8)0.0297 (3)
C1610.7080 (3)0.89220 (17)0.80149 (15)0.0593 (8)
H16A0.65190.90120.84710.089*
H16B0.77570.95300.79930.089*
H16C0.75490.84460.80970.089*
N210.01055 (14)0.29156 (10)0.72415 (8)0.0215 (3)
C220.09026 (17)0.37465 (12)0.73092 (10)0.0221 (3)
N230.20532 (15)0.40024 (10)0.78293 (9)0.0233 (3)
C240.22094 (17)0.33451 (12)0.82525 (10)0.0214 (3)
C250.12972 (17)0.24398 (12)0.82054 (10)0.0215 (3)
C260.00910 (17)0.22931 (12)0.76795 (10)0.0207 (3)
N2210.07508 (17)0.43676 (11)0.68423 (10)0.0269 (3)
H22A0.142 (2)0.4857 (16)0.6866 (13)0.032*
H22B0.005 (2)0.4226 (15)0.6455 (13)0.032*
N2410.34341 (14)0.36271 (10)0.87881 (9)0.0217 (3)
C2420.35539 (17)0.35562 (12)0.96090 (10)0.0203 (3)
N2430.48056 (15)0.36006 (11)0.98711 (9)0.0258 (3)
C23A0.55648 (18)0.37021 (12)0.91968 (11)0.0247 (4)
C2440.69400 (19)0.37809 (14)0.91154 (13)0.0341 (4)
H2440.75230.37510.95640.041*
C2450.7435 (2)0.39028 (15)0.83693 (14)0.0390 (5)
H2450.83740.39610.83080.047*
C2460.6604 (2)0.39430 (14)0.77043 (14)0.0384 (5)
H2460.69860.40250.71990.046*
C2470.5228 (2)0.38660 (14)0.77602 (12)0.0313 (4)
H2470.46550.38970.73080.038*
C27A0.47344 (17)0.37415 (12)0.85153 (11)0.0239 (4)
C2710.24296 (17)0.35167 (12)1.01368 (10)0.0234 (4)
C2720.13865 (18)0.39101 (12)0.99731 (11)0.0249 (4)
H2720.13810.41880.94980.030*
C2730.03565 (19)0.39044 (13)1.04892 (12)0.0296 (4)
H2730.03570.41661.03590.036*
C2740.0355 (2)0.35166 (14)1.12032 (12)0.0318 (4)
C2750.1422 (2)0.31406 (14)1.13722 (11)0.0317 (4)
H2750.14490.28841.18580.038*
C2760.24413 (19)0.31326 (13)1.08489 (11)0.0279 (4)
H2760.31510.28651.09740.033*
C2770.0781 (2)0.34854 (18)1.17540 (13)0.0440 (5)
H27A0.03980.38041.23130.066*
H27B0.12850.28191.17560.066*
H27C0.14030.38131.15530.066*
N2510.16943 (15)0.18153 (10)0.86418 (9)0.0232 (3)
C2570.09527 (19)0.10021 (13)0.87222 (12)0.0301 (4)
H2570.00350.07780.84840.036*
C2510.1503 (2)0.04022 (13)0.91830 (11)0.0279 (4)
C2520.28094 (19)0.07247 (13)0.95805 (11)0.0280 (4)
H2520.33710.13480.95580.034*
C2530.3303 (2)0.01453 (16)1.00106 (13)0.0363 (5)
H2530.42040.03761.02750.044*
C2540.2505 (2)0.07688 (15)1.00643 (12)0.0360 (5)
C2550.1206 (3)0.10839 (14)0.96754 (14)0.0449 (6)
H2550.06410.17040.97050.054*
C2560.0706 (2)0.05067 (15)0.92392 (14)0.0465 (6)
H2560.01960.07390.89760.056*
C2580.3051 (3)0.14011 (18)1.05342 (16)0.0529 (6)
H28A0.34550.18101.01580.079*
H28B0.23010.18001.07820.079*
H28C0.37500.10011.09660.079*
O2610.08904 (12)0.14627 (8)0.76290 (8)0.0260 (3)
C2610.21247 (19)0.13513 (14)0.71211 (13)0.0360 (5)
H26A0.19120.13570.65510.054*
H26B0.25080.18780.73140.054*
H26C0.27920.07430.71540.054*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N110.0238 (7)0.0226 (7)0.0221 (7)0.0029 (6)0.0059 (6)0.0071 (6)
C120.0211 (8)0.0220 (8)0.0214 (8)0.0032 (6)0.0034 (6)0.0065 (7)
N130.0223 (7)0.0214 (7)0.0207 (7)0.0023 (6)0.0053 (5)0.0070 (6)
C140.0197 (8)0.0199 (8)0.0183 (8)0.0057 (6)0.0037 (6)0.0038 (6)
C150.0202 (8)0.0193 (8)0.0195 (8)0.0054 (6)0.0020 (6)0.0057 (6)
C160.0198 (8)0.0182 (8)0.0252 (8)0.0022 (6)0.0039 (6)0.0061 (6)
N1210.0322 (9)0.0265 (8)0.0228 (8)0.0031 (7)0.0098 (6)0.0099 (6)
N1410.0223 (7)0.0172 (7)0.0192 (7)0.0033 (5)0.0052 (5)0.0044 (5)
C1420.0229 (8)0.0197 (8)0.0204 (8)0.0012 (6)0.0058 (6)0.0076 (6)
N1430.0294 (8)0.0236 (7)0.0230 (7)0.0047 (6)0.0076 (6)0.0025 (6)
C13A0.0262 (9)0.0223 (8)0.0247 (9)0.0030 (7)0.0035 (7)0.0038 (7)
C1440.0368 (11)0.0293 (10)0.0288 (10)0.0050 (8)0.0067 (8)0.0035 (8)
C1450.0371 (11)0.0287 (10)0.0383 (11)0.0079 (8)0.0001 (9)0.0059 (8)
C1460.0326 (10)0.0253 (9)0.0458 (12)0.0113 (8)0.0003 (9)0.0020 (8)
C1470.0268 (9)0.0251 (9)0.0321 (10)0.0074 (7)0.0033 (7)0.0047 (7)
C17A0.0215 (8)0.0189 (8)0.0238 (8)0.0020 (6)0.0014 (7)0.0035 (6)
C1710.0208 (8)0.0196 (8)0.0258 (9)0.0015 (6)0.0051 (7)0.0061 (7)
C1720.0217 (8)0.0259 (9)0.0273 (9)0.0051 (7)0.0011 (7)0.0115 (7)
C1730.0277 (9)0.0301 (10)0.0348 (10)0.0071 (8)0.0087 (8)0.0107 (8)
C1740.0275 (10)0.0260 (9)0.0490 (12)0.0087 (8)0.0056 (8)0.0130 (9)
C1750.0338 (10)0.0263 (9)0.0424 (11)0.0081 (8)0.0100 (9)0.0131 (8)
C1760.0332 (10)0.0240 (9)0.0283 (9)0.0042 (7)0.0083 (8)0.0079 (7)
C1770.0528 (14)0.0456 (13)0.0697 (17)0.0306 (12)0.0206 (12)0.0219 (12)
N1510.0212 (7)0.0225 (7)0.0209 (7)0.0060 (6)0.0006 (5)0.0075 (6)
C1570.0281 (9)0.0235 (9)0.0217 (8)0.0029 (7)0.0029 (7)0.0048 (7)
C1510.0246 (9)0.0251 (9)0.0233 (8)0.0049 (7)0.0006 (7)0.0080 (7)
C1520.0296 (9)0.0243 (9)0.0265 (9)0.0061 (7)0.0014 (7)0.0053 (7)
C1530.0326 (10)0.0326 (10)0.0241 (9)0.0091 (8)0.0003 (7)0.0017 (7)
C1540.0259 (9)0.0379 (10)0.0272 (9)0.0103 (8)0.0057 (7)0.0132 (8)
C1550.0280 (9)0.0309 (10)0.0312 (10)0.0014 (8)0.0023 (8)0.0118 (8)
C1560.0310 (10)0.0284 (9)0.0271 (9)0.0002 (8)0.0025 (8)0.0076 (8)
C1580.0463 (13)0.0550 (14)0.0287 (10)0.0108 (11)0.0076 (9)0.0161 (10)
O1610.0294 (7)0.0245 (6)0.0271 (7)0.0062 (5)0.0116 (5)0.0091 (5)
C1610.0632 (16)0.0437 (13)0.0466 (13)0.0270 (12)0.0380 (12)0.0216 (11)
N210.0217 (7)0.0210 (7)0.0193 (7)0.0018 (6)0.0041 (5)0.0053 (5)
C220.0230 (8)0.0209 (8)0.0197 (8)0.0019 (7)0.0046 (6)0.0055 (6)
N230.0239 (7)0.0231 (7)0.0207 (7)0.0021 (6)0.0042 (6)0.0073 (6)
C240.0210 (8)0.0256 (8)0.0168 (8)0.0052 (7)0.0025 (6)0.0051 (6)
C250.0235 (8)0.0213 (8)0.0178 (8)0.0028 (7)0.0041 (6)0.0058 (6)
C260.0221 (8)0.0190 (8)0.0179 (8)0.0008 (6)0.0025 (6)0.0043 (6)
N2210.0269 (8)0.0225 (7)0.0268 (8)0.0018 (6)0.0113 (6)0.0106 (6)
N2410.0187 (7)0.0240 (7)0.0213 (7)0.0029 (6)0.0024 (5)0.0073 (6)
C2420.0201 (8)0.0201 (8)0.0188 (8)0.0025 (6)0.0053 (6)0.0057 (6)
N2430.0228 (7)0.0250 (7)0.0281 (8)0.0044 (6)0.0051 (6)0.0065 (6)
C23A0.0218 (8)0.0204 (8)0.0279 (9)0.0018 (7)0.0026 (7)0.0017 (7)
C2440.0213 (9)0.0304 (10)0.0484 (12)0.0054 (8)0.0038 (8)0.0061 (9)
C2450.0241 (10)0.0332 (11)0.0536 (13)0.0030 (8)0.0074 (9)0.0007 (9)
C2460.0332 (11)0.0313 (10)0.0442 (12)0.0005 (8)0.0131 (9)0.0032 (9)
C2470.0322 (10)0.0298 (10)0.0295 (10)0.0033 (8)0.0045 (8)0.0080 (8)
C27A0.0185 (8)0.0201 (8)0.0296 (9)0.0006 (6)0.0002 (7)0.0039 (7)
C2710.0234 (8)0.0211 (8)0.0218 (8)0.0014 (7)0.0035 (7)0.0030 (7)
C2720.0277 (9)0.0237 (8)0.0222 (8)0.0057 (7)0.0001 (7)0.0044 (7)
C2730.0264 (9)0.0276 (9)0.0344 (10)0.0085 (7)0.0003 (8)0.0037 (8)
C2740.0322 (10)0.0298 (10)0.0288 (10)0.0035 (8)0.0055 (8)0.0011 (8)
C2750.0348 (10)0.0360 (10)0.0217 (9)0.0037 (8)0.0011 (7)0.0100 (8)
C2760.0253 (9)0.0310 (9)0.0243 (9)0.0029 (7)0.0047 (7)0.0069 (7)
C2770.0442 (13)0.0528 (14)0.0354 (11)0.0134 (11)0.0122 (10)0.0078 (10)
N2510.0266 (8)0.0216 (7)0.0204 (7)0.0047 (6)0.0033 (6)0.0063 (6)
C2570.0289 (9)0.0251 (9)0.0322 (10)0.0004 (7)0.0110 (8)0.0106 (8)
C2510.0354 (10)0.0228 (9)0.0242 (9)0.0056 (7)0.0053 (7)0.0070 (7)
C2520.0283 (9)0.0295 (9)0.0289 (9)0.0090 (8)0.0035 (7)0.0113 (8)
C2530.0295 (10)0.0488 (12)0.0385 (11)0.0172 (9)0.0038 (8)0.0202 (10)
C2540.0515 (13)0.0351 (11)0.0309 (10)0.0235 (10)0.0054 (9)0.0129 (8)
C2550.0671 (15)0.0212 (9)0.0412 (12)0.0039 (10)0.0149 (11)0.0104 (9)
C2560.0533 (14)0.0268 (10)0.0488 (13)0.0061 (9)0.0275 (11)0.0146 (9)
C2580.0633 (16)0.0527 (14)0.0596 (15)0.0304 (13)0.0072 (12)0.0332 (12)
O2610.0216 (6)0.0222 (6)0.0295 (7)0.0028 (5)0.0095 (5)0.0099 (5)
C2610.0261 (10)0.0295 (10)0.0451 (12)0.0059 (8)0.0173 (8)0.0148 (9)
Geometric parameters (Å, º) top
N11—C161.319 (2)N21—C261.317 (2)
N11—C121.352 (2)N21—C221.354 (2)
C12—N1211.339 (2)C22—N2211.334 (2)
C12—N131.351 (2)C22—N231.356 (2)
N13—C141.330 (2)N23—C241.332 (2)
C14—C151.391 (2)C24—C251.394 (2)
C14—N1411.425 (2)C24—N2411.426 (2)
C15—N1511.402 (2)C25—N2511.399 (2)
C15—C161.419 (2)C25—C261.427 (2)
C16—O1611.346 (2)C26—O2611.3427 (19)
N121—H12A0.90 (2)N221—H22A0.84 (2)
N121—H12B0.92 (2)N221—H22B0.90 (2)
N141—C1421.389 (2)N241—C2421.387 (2)
N141—C17A1.395 (2)N241—C27A1.395 (2)
C142—N1431.312 (2)C242—N2431.316 (2)
C142—C1711.467 (2)C242—C2711.465 (2)
N143—C13A1.394 (2)N243—C23A1.391 (2)
C13A—C1441.396 (3)C23A—C2441.391 (3)
C13A—C17A1.402 (2)C23A—C27A1.407 (2)
C144—C1451.378 (3)C244—C2451.376 (3)
C144—H1440.9500C244—H2440.9500
C145—C1461.399 (3)C245—C2461.386 (3)
C145—H1450.9500C245—H2450.9500
C146—C1471.379 (3)C246—C2471.387 (3)
C146—H1460.9500C246—H2460.9500
C147—C17A1.390 (2)C247—C27A1.390 (3)
C147—H1470.9500C247—H2470.9500
C171—C1721.398 (2)C271—C2721.388 (2)
C171—C1761.401 (2)C271—C2761.396 (2)
C172—C1731.388 (3)C272—C2731.381 (3)
C172—H1720.9500C272—H2720.9500
C173—C1741.396 (3)C273—C2741.400 (3)
C173—H1730.9500C273—H2730.9500
C174—C1751.388 (3)C274—C2751.394 (3)
C174—C1771.506 (3)C274—C2771.500 (3)
C175—C1761.385 (3)C275—C2761.383 (3)
C175—H1750.9500C275—H2750.9500
C176—H1760.9500C276—H2760.9500
C177—H17A0.9800C277—H27A0.9800
C177—H17B0.9800C277—H27B0.9800
C177—H17C0.9800C277—H27C0.9800
N151—C1571.270 (2)N251—C2571.265 (2)
C157—C1511.469 (2)C257—C2511.471 (2)
C157—H1570.9500C257—H2570.9500
C151—C1561.390 (2)C251—C2521.386 (3)
C151—C1521.394 (2)C251—C2561.388 (3)
C152—C1531.381 (3)C252—C2531.385 (3)
C152—H1520.9500C252—H2520.9500
C153—C1541.393 (3)C253—C2541.394 (3)
C153—H1530.9500C253—H2530.9500
C154—C1551.386 (3)C254—C2551.374 (3)
C154—C1581.511 (3)C254—C2581.516 (3)
C155—C1561.387 (3)C255—C2561.392 (3)
C155—H1550.9500C255—H2550.9500
C156—H1560.9500C256—H2560.9500
C158—H18A0.9800C258—H28A0.9800
C158—H18B0.9800C258—H28B0.9800
C158—H18C0.9800C258—H28C0.9800
O161—C1611.438 (2)O261—C2611.445 (2)
C161—H16A0.9800C261—H26A0.9800
C161—H16B0.9800C261—H26B0.9800
C161—H16C0.9800C261—H26C0.9800
C16—N11—C12116.72 (14)C26—N21—C22117.16 (14)
N121—C12—N13116.87 (15)N221—C22—N21118.06 (15)
N121—C12—N11118.51 (15)N221—C22—N23117.31 (15)
N13—C12—N11124.62 (15)N21—C22—N23124.62 (15)
C14—N13—C12116.05 (14)C24—N23—C22115.76 (14)
N13—C14—C15125.55 (15)N23—C24—C25125.61 (15)
N13—C14—N141114.32 (14)N23—C24—N241114.69 (14)
C15—C14—N141120.07 (14)C25—C24—N241119.70 (14)
C14—C15—N151117.75 (14)C24—C25—N251117.35 (14)
C14—C15—C16112.34 (14)C24—C25—C26112.54 (14)
N151—C15—C16129.44 (15)N251—C25—C26130.07 (15)
N11—C16—O161118.58 (15)N21—C26—O261118.71 (14)
N11—C16—C15124.63 (15)N21—C26—C25124.04 (15)
O161—C16—C15116.75 (14)O261—C26—C25117.25 (14)
C12—N121—H12A116.8 (14)C22—N221—H22A116.1 (15)
C12—N121—H12B121.6 (14)C22—N221—H22B122.1 (14)
H12A—N121—H12B121.2 (19)H22A—N221—H22B120.9 (19)
C142—N141—C17A106.79 (13)C242—N241—C27A106.55 (13)
C142—N141—C14129.12 (14)C242—N241—C24127.15 (14)
C17A—N141—C14122.06 (13)C27A—N241—C24123.66 (14)
N143—C142—N141112.34 (15)N243—C242—N241112.63 (15)
N143—C142—C171123.40 (15)N243—C242—C271124.05 (15)
N141—C142—C171123.85 (15)N241—C242—C271123.13 (14)
C142—N143—C13A105.71 (14)C242—N243—C23A105.55 (14)
N143—C13A—C144130.21 (16)N243—C23A—C244130.79 (17)
N143—C13A—C17A110.21 (15)N243—C23A—C27A110.18 (15)
C144—C13A—C17A119.58 (17)C244—C23A—C27A119.02 (17)
C145—C144—C13A117.65 (18)C245—C244—C23A118.35 (19)
C145—C144—H144121.2C245—C244—H244120.8
C13A—C144—H144121.2C23A—C244—H244120.8
C144—C145—C146122.00 (18)C244—C245—C246121.92 (19)
C144—C145—H145119.0C244—C245—H245119.0
C146—C145—H145119.0C246—C245—H245119.0
C147—C146—C145121.37 (18)C245—C246—C247121.5 (2)
C147—C146—H146119.3C245—C246—H246119.3
C145—C146—H146119.3C247—C246—H246119.3
C146—C147—C17A116.47 (17)C246—C247—C27A116.30 (18)
C146—C147—H147121.8C246—C247—H247121.8
C17A—C147—H147121.8C27A—C247—H247121.8
C147—C17A—N141132.13 (16)C247—C27A—N241132.04 (16)
C147—C17A—C13A122.93 (16)C247—C27A—C23A122.92 (17)
N141—C17A—C13A104.94 (14)N241—C27A—C23A105.04 (15)
C172—C171—C176118.23 (17)C272—C271—C276118.67 (17)
C172—C171—C142122.14 (15)C272—C271—C242121.31 (15)
C176—C171—C142119.39 (16)C276—C271—C242119.90 (16)
C173—C172—C171120.46 (16)C273—C272—C271121.17 (16)
C173—C172—H172119.8C273—C272—H272119.4
C171—C172—H172119.8C271—C272—H272119.4
C172—C173—C174121.40 (18)C272—C273—C274120.61 (17)
C172—C173—H173119.3C272—C273—H273119.7
C174—C173—H173119.3C274—C273—H273119.7
C175—C174—C173117.80 (18)C275—C274—C273117.86 (18)
C175—C174—C177121.12 (19)C275—C274—C277121.32 (18)
C173—C174—C177121.1 (2)C273—C274—C277120.80 (19)
C176—C175—C174121.52 (17)C276—C275—C274121.53 (17)
C176—C175—H175119.2C276—C275—H275119.2
C174—C175—H175119.2C274—C275—H275119.2
C175—C176—C171120.58 (18)C275—C276—C271120.13 (17)
C175—C176—H176119.7C275—C276—H276119.9
C171—C176—H176119.7C271—C276—H276119.9
C174—C177—H17A109.5C274—C277—H27A109.5
C174—C177—H17B109.5C274—C277—H27B109.5
H17A—C177—H17B109.5H27A—C277—H27B109.5
C174—C177—H17C109.5C274—C277—H27C109.5
H17A—C177—H17C109.5H27A—C277—H27C109.5
H17B—C177—H17C109.5H27B—C277—H27C109.5
C157—N151—C15124.28 (15)C257—N251—C25125.63 (15)
N151—C157—C151121.44 (16)N251—C257—C251120.39 (16)
N151—C157—H157119.3N251—C257—H257119.8
C151—C157—H157119.3C251—C257—H257119.8
C156—C151—C152118.54 (16)C252—C251—C256118.14 (17)
C156—C151—C157118.95 (16)C252—C251—C257121.64 (16)
C152—C151—C157122.50 (16)C256—C251—C257120.22 (17)
C153—C152—C151120.03 (17)C253—C252—C251120.47 (18)
C153—C152—H152120.0C253—C252—H252119.8
C151—C152—H152120.0C251—C252—H252119.8
C152—C153—C154121.56 (18)C252—C253—C254121.40 (19)
C152—C153—H153119.2C252—C253—H253119.3
C154—C153—H153119.2C254—C253—H253119.3
C155—C154—C153118.31 (17)C255—C254—C253118.02 (17)
C155—C154—C158120.72 (18)C255—C254—C258120.8 (2)
C153—C154—C158120.97 (18)C253—C254—C258121.2 (2)
C154—C155—C156120.45 (17)C254—C255—C256120.87 (19)
C154—C155—H155119.8C254—C255—H255119.6
C156—C155—H155119.8C256—C255—H255119.6
C155—C156—C151121.08 (18)C251—C256—C255121.1 (2)
C155—C156—H156119.5C251—C256—H256119.4
C151—C156—H156119.5C255—C256—H256119.4
C154—C158—H18A109.5C254—C258—H28A109.5
C154—C158—H18B109.5C254—C258—H28B109.5
H18A—C158—H18B109.5H28A—C258—H28B109.5
C154—C158—H18C109.5C254—C258—H28C109.5
H18A—C158—H18C109.5H28A—C258—H28C109.5
H18B—C158—H18C109.5H28B—C258—H28C109.5
C16—O161—C161116.64 (14)C26—O261—C261116.05 (13)
O161—C161—H16A109.5O261—C261—H26A109.5
O161—C161—H16B109.5O261—C261—H26B109.5
H16A—C161—H16B109.5H26A—C261—H26B109.5
O161—C161—H16C109.5O261—C261—H26C109.5
H16A—C161—H16C109.5H26A—C261—H26C109.5
H16B—C161—H16C109.5H26B—C261—H26C109.5
C16—N11—C12—N121177.86 (17)C26—N21—C22—N221176.98 (17)
C16—N11—C12—N133.2 (3)C26—N21—C22—N234.1 (3)
N121—C12—N13—C14177.56 (16)N221—C22—N23—C24176.37 (16)
N11—C12—N13—C143.5 (3)N21—C22—N23—C244.7 (3)
C12—N13—C14—C151.1 (3)C22—N23—C24—C250.4 (3)
C12—N13—C14—N141175.97 (15)C22—N23—C24—N241179.33 (15)
N13—C14—C15—N151171.78 (16)N23—C24—C25—N251174.37 (16)
N141—C14—C15—N1515.2 (2)N241—C24—C25—N2515.4 (2)
N13—C14—C15—C161.1 (2)N23—C24—C25—C263.7 (3)
N141—C14—C15—C16178.06 (15)N241—C24—C25—C26176.54 (15)
C12—N11—C16—O161177.18 (16)C22—N21—C26—O261179.78 (15)
C12—N11—C16—C150.5 (3)C22—N21—C26—C250.8 (3)
C14—C15—C16—N111.4 (3)C24—C25—C26—N214.4 (3)
N151—C15—C16—N11170.40 (17)N251—C25—C26—N21173.41 (17)
C14—C15—C16—O161179.17 (15)C24—C25—C26—O261176.22 (15)
N151—C15—C16—O1617.4 (3)N251—C25—C26—O2616.0 (3)
N13—C14—N141—C142129.84 (18)N23—C24—N241—C242130.72 (18)
C15—C14—N141—C14252.9 (2)C25—C24—N241—C24249.5 (3)
N13—C14—N141—C17A68.6 (2)N23—C24—N241—C27A70.2 (2)
C15—C14—N141—C17A108.71 (18)C25—C24—N241—C27A109.57 (19)
C17A—N141—C142—N1430.61 (19)C27A—N241—C242—N2431.01 (19)
C14—N141—C142—N143163.14 (16)C24—N241—C242—N243160.92 (16)
C17A—N141—C142—C171172.24 (15)C27A—N241—C242—C271174.24 (15)
C14—N141—C142—C17124.0 (3)C24—N241—C242—C27123.8 (3)
N141—C142—N143—C13A0.1 (2)N241—C242—N243—C23A0.25 (19)
C171—C142—N143—C13A172.96 (16)C271—C242—N243—C23A175.45 (15)
C142—N143—C13A—C144179.7 (2)C242—N243—C23A—C244179.77 (19)
C142—N143—C13A—C17A0.7 (2)C242—N243—C23A—C27A1.43 (19)
N143—C13A—C144—C145178.55 (19)N243—C23A—C244—C245178.18 (18)
C17A—C13A—C144—C1451.0 (3)C27A—C23A—C244—C2450.5 (3)
C13A—C144—C145—C1460.6 (3)C23A—C244—C245—C2460.4 (3)
C144—C145—C146—C1470.3 (3)C244—C245—C246—C2470.3 (3)
C145—C146—C147—C17A0.8 (3)C245—C246—C247—C27A0.4 (3)
C146—C147—C17A—N141179.90 (18)C246—C247—C27A—N241179.03 (18)
C146—C147—C17A—C13A0.3 (3)C246—C247—C27A—C23A0.6 (3)
C142—N141—C17A—C147179.17 (19)C242—N241—C27A—C247178.57 (19)
C14—N141—C17A—C14715.7 (3)C24—N241—C27A—C24718.7 (3)
C142—N141—C17A—C13A1.01 (18)C242—N241—C27A—C23A1.78 (18)
C14—N141—C17A—C13A164.14 (15)C24—N241—C27A—C23A160.94 (15)
N143—C13A—C17A—C147179.06 (16)N243—C23A—C27A—C247178.30 (16)
C144—C13A—C17A—C1470.6 (3)C244—C23A—C27A—C2470.7 (3)
N143—C13A—C17A—N1411.10 (19)N243—C23A—C27A—N2412.02 (19)
C144—C13A—C17A—N141179.26 (17)C244—C23A—C27A—N241179.02 (16)
N143—C142—C171—C172150.51 (17)N243—C242—C271—C272149.00 (17)
N141—C142—C171—C17221.6 (3)N241—C242—C271—C27225.7 (2)
N143—C142—C171—C17623.8 (3)N243—C242—C271—C27626.8 (3)
N141—C142—C171—C176164.11 (16)N241—C242—C271—C276158.47 (16)
C176—C171—C172—C1730.3 (3)C276—C271—C272—C2731.6 (3)
C142—C171—C172—C173174.73 (16)C242—C271—C272—C273177.48 (16)
C171—C172—C173—C1740.5 (3)C271—C272—C273—C2741.3 (3)
C172—C173—C174—C1750.0 (3)C272—C273—C274—C2750.0 (3)
C172—C173—C174—C177179.11 (19)C272—C273—C274—C277178.37 (19)
C173—C174—C175—C1760.7 (3)C273—C274—C275—C2761.1 (3)
C177—C174—C175—C176178.4 (2)C277—C274—C275—C276177.32 (19)
C174—C175—C176—C1710.8 (3)C274—C275—C276—C2710.8 (3)
C172—C171—C176—C1750.3 (3)C272—C271—C276—C2750.6 (3)
C142—C171—C176—C175174.23 (17)C242—C271—C276—C275176.49 (17)
C14—C15—N151—C157171.48 (17)C24—C25—N251—C257173.80 (18)
C16—C15—N151—C15717.1 (3)C26—C25—N251—C2578.5 (3)
C15—N151—C157—C151176.28 (16)C25—N251—C257—C251178.60 (17)
N151—C157—C151—C156176.25 (18)N251—C257—C251—C2523.8 (3)
N151—C157—C151—C1522.9 (3)N251—C257—C251—C256177.1 (2)
C156—C151—C152—C1530.6 (3)C256—C251—C252—C2530.9 (3)
C157—C151—C152—C153178.49 (17)C257—C251—C252—C253179.97 (19)
C151—C152—C153—C1541.3 (3)C251—C252—C253—C2540.6 (3)
C152—C153—C154—C1551.8 (3)C252—C253—C254—C2550.1 (3)
C152—C153—C154—C158177.42 (19)C252—C253—C254—C258179.8 (2)
C153—C154—C155—C1560.3 (3)C253—C254—C255—C2560.2 (4)
C158—C154—C155—C156178.87 (19)C258—C254—C255—C256179.6 (2)
C154—C155—C156—C1511.6 (3)C252—C251—C256—C2550.6 (4)
C152—C151—C156—C1552.1 (3)C257—C251—C256—C255179.7 (2)
C157—C151—C156—C155177.08 (18)C254—C255—C256—C2510.1 (4)
N11—C16—O161—C1613.5 (3)N21—C26—O261—C2613.2 (2)
C15—C16—O161—C161174.4 (2)C25—C26—O261—C261177.32 (17)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N121—H12A···N230.90 (2)2.13 (2)3.022 (2)171.5 (19)
N121—H12B···N243i0.92 (2)2.18 (2)3.062 (2)160 (2)
N221—H22A···N130.84 (2)2.19 (2)3.023 (2)173.4 (19)
N221—H22B···N143ii0.90 (2)2.11 (2)2.994 (2)169 (2)
C146—H146···N151iii0.952.573.390 (3)145
C176—H176···N21ii0.952.583.464 (2)154
C155—H155···Cg1iv0.952.603.465 (2)151
C255—H255···Cg2v0.952.873.784 (2)163
Symmetry codes: (i) x+1, y+1, z+2; (ii) x, y+1, z+1; (iii) x+1, y+1, z+1; (iv) x+1, y+2, z+1; (v) x, y, z+2.
(E)-4-Methoxy-5-[(4-chlorobenzylidene)amino]-6-[2-(4-methylphenyl)-1H-benzo[d]imidazol-1-yl]pyrimidin-2-amine (VIa) top
Crystal data top
C26H21ClN6OZ = 4
Mr = 468.94F(000) = 976
Triclinic, P1Dx = 1.320 Mg m3
a = 10.2298 (7) ÅMo Kα radiation, λ = 0.71073 Å
b = 14.8344 (9) ÅCell parameters from 10821 reflections
c = 16.5321 (10) Åθ = 2.2–27.5°
α = 99.672 (2)°µ = 0.19 mm1
β = 92.038 (2)°T = 100 K
γ = 106.704 (2)°Block, yellow
V = 2359.4 (3) Å30.18 × 0.13 × 0.11 mm
Data collection top
Bruker D8 Venture
diffractometer
10821 independent reflections
Radiation source: INCOATEC high brilliance microfocus sealed tube8240 reflections with I > 2σ(I)
Multilayer mirror monochromatorRint = 0.079
φ and ω scansθmax = 27.5°, θmin = 2.2°
Absorption correction: multi-scan
(SADABS; Bruker, 2016)
h = 1313
Tmin = 0.926, Tmax = 0.979k = 1919
126128 measured reflectionsl = 2121
Refinement top
Refinement on F2Primary atom site location: dual
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.058H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.164 w = 1/[σ2(Fo2) + (0.0623P)2 + 2.9524P]
where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
10821 reflectionsΔρmax = 0.74 e Å3
629 parametersΔρmin = 0.61 e Å3
0 restraints
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N110.5093 (2)0.73559 (13)0.78242 (12)0.0295 (4)
C120.4121 (2)0.64984 (16)0.77238 (13)0.0277 (5)
N130.32778 (19)0.60766 (13)0.70269 (11)0.0261 (4)
C140.3497 (2)0.65317 (15)0.63966 (13)0.0232 (4)
C150.4491 (2)0.73995 (15)0.64043 (13)0.0235 (4)
C160.5266 (2)0.77777 (15)0.71803 (14)0.0266 (4)
N1210.3950 (2)0.60280 (16)0.83527 (13)0.0364 (5)
H12A0.340 (3)0.546 (2)0.8284 (19)0.044*
H12B0.451 (3)0.624 (2)0.881 (2)0.044*
N1410.26435 (18)0.60411 (12)0.56618 (11)0.0236 (4)
C1420.1848 (2)0.63769 (15)0.51649 (13)0.0248 (4)
N1430.1480 (2)0.58204 (14)0.44356 (12)0.0315 (4)
C13A0.2064 (2)0.50812 (16)0.44425 (14)0.0300 (5)
C1440.2013 (3)0.42957 (19)0.38317 (17)0.0417 (6)
H1440.15460.42050.33040.050*
C1450.2665 (3)0.36576 (19)0.40220 (18)0.0448 (7)
H1450.26390.31160.36160.054*
C1460.3361 (3)0.37778 (19)0.47877 (18)0.0427 (6)
H1460.37880.33140.48930.051*
C1470.3447 (3)0.45575 (17)0.53994 (16)0.0335 (5)
H1470.39340.46500.59220.040*
C17A0.2781 (2)0.51979 (15)0.52076 (14)0.0264 (4)
C1710.1326 (2)0.71894 (15)0.54459 (14)0.0273 (5)
C1720.1197 (2)0.74991 (17)0.62741 (15)0.0299 (5)
H1720.15190.72120.66800.036*
C1730.0601 (3)0.82244 (19)0.65130 (17)0.0381 (6)
H1730.05340.84320.70810.046*
C1740.0100 (3)0.86500 (19)0.59310 (19)0.0411 (6)
C1750.0223 (3)0.83344 (18)0.51088 (18)0.0416 (6)
H1750.01180.86120.47020.050*
C1760.0833 (3)0.76219 (17)0.48645 (16)0.0356 (6)
H1760.09150.74260.42960.043*
C1770.0521 (4)0.9448 (3)0.6201 (3)0.0657 (10)
H17A0.08380.96510.57150.099*
H17B0.01690.99920.65430.099*
H17C0.12990.92200.65200.099*
N1510.46905 (18)0.77248 (13)0.56570 (11)0.0248 (4)
C1570.5450 (3)0.85499 (17)0.55919 (14)0.0336 (5)
H1570.58930.89950.60740.040*
C1510.5654 (2)0.88248 (17)0.47830 (14)0.0315 (5)
C1520.5123 (3)0.81888 (18)0.40506 (15)0.0332 (5)
H1520.46340.75420.40610.040*
C1530.5305 (3)0.84949 (19)0.33039 (15)0.0372 (6)
H1530.49640.80570.28010.045*
C1540.5988 (3)0.9443 (2)0.32981 (15)0.0357 (5)
C1550.6541 (3)1.0089 (2)0.40099 (16)0.0394 (6)
H1550.70221.07360.39950.047*
C1560.6376 (3)0.97672 (19)0.47544 (16)0.0404 (6)
H1560.67651.02000.52530.049*
Cl140.61513 (8)0.98406 (6)0.23613 (4)0.0535 (2)
O1610.62680 (18)0.86076 (12)0.72414 (10)0.0371 (4)
C1610.7048 (4)0.8990 (2)0.8030 (2)0.0758 (13)
H16A0.64320.90940.84520.114*
H16B0.77320.96000.80050.114*
H16C0.75120.85350.81680.114*
N210.01076 (19)0.29134 (13)0.72456 (11)0.0264 (4)
C220.0905 (2)0.37540 (16)0.73184 (13)0.0276 (5)
N230.2062 (2)0.40131 (13)0.78392 (11)0.0282 (4)
C240.2215 (2)0.33553 (16)0.82574 (13)0.0256 (4)
C250.1298 (2)0.24447 (15)0.82064 (13)0.0255 (4)
C260.0090 (2)0.22894 (15)0.76805 (13)0.0250 (4)
N2210.0750 (2)0.43796 (15)0.68594 (13)0.0327 (5)
H22A0.137 (3)0.484 (2)0.6879 (18)0.039*
H22B0.009 (3)0.424 (2)0.6519 (19)0.039*
N2410.34453 (19)0.36443 (13)0.87967 (11)0.0262 (4)
C2420.3554 (2)0.35658 (15)0.96201 (13)0.0252 (4)
N2430.4798 (2)0.35935 (14)0.98802 (12)0.0320 (4)
C23A0.5563 (2)0.36898 (17)0.92006 (15)0.0321 (5)
C2440.6928 (3)0.37458 (19)0.9110 (2)0.0435 (6)
H2440.75010.36940.95540.052*
C2450.7429 (3)0.3877 (2)0.8368 (2)0.0522 (8)
H2450.83650.39260.83060.063*
C2460.6619 (3)0.3940 (2)0.7710 (2)0.0486 (7)
H2460.70100.40330.72060.058*
C2470.5242 (3)0.38698 (19)0.77644 (16)0.0391 (6)
H2470.46760.39060.73100.047*
C27A0.4740 (2)0.37435 (16)0.85209 (15)0.0303 (5)
C2710.2428 (2)0.35166 (16)1.01447 (14)0.0289 (5)
C2720.1396 (2)0.39084 (16)0.99886 (14)0.0302 (5)
H2720.14040.42010.95190.036*
C2730.0352 (3)0.38865 (18)1.04979 (17)0.0386 (6)
H2730.03560.41501.03680.046*
C2740.0327 (3)0.3479 (2)1.12034 (17)0.0413 (6)
C2750.1385 (3)0.3107 (2)1.13687 (15)0.0411 (6)
H2750.14000.28401.18510.049*
C2760.2419 (3)0.31137 (18)1.08503 (14)0.0341 (5)
H2760.31230.28441.09740.041*
C2770.0822 (4)0.3425 (3)1.1745 (2)0.0579 (8)
H27A0.04630.38021.22940.087*
H27B0.12580.27561.17870.087*
H27C0.14990.36821.15080.087*
N2510.1688 (2)0.18238 (13)0.86433 (11)0.0271 (4)
C2570.0960 (3)0.09961 (17)0.87066 (15)0.0358 (6)
H2570.00500.07540.84510.043*
C2510.1510 (3)0.04070 (17)0.91710 (14)0.0326 (5)
C2520.2832 (3)0.07450 (18)0.95538 (15)0.0337 (5)
H2520.33940.13660.95140.040*
C2530.3335 (3)0.0185 (2)0.99919 (18)0.0423 (6)
H2530.42440.04151.02490.051*
C2540.2507 (3)0.07150 (19)1.00544 (16)0.0395 (6)
C2550.1211 (3)0.10679 (19)0.96876 (18)0.0506 (8)
H2550.06540.16880.97340.061*
C2560.0713 (3)0.04997 (19)0.9240 (2)0.0538 (9)
H2560.01920.07400.89780.065*
Cl240.31387 (9)0.14186 (6)1.06192 (5)0.0601 (2)
O2610.08870 (16)0.14522 (11)0.76251 (10)0.0321 (4)
C2610.2151 (3)0.13423 (19)0.71455 (18)0.0435 (7)
H26A0.19770.13420.65660.065*
H26B0.25110.18750.73520.065*
H26C0.28220.07350.71930.065*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N110.0323 (10)0.0255 (9)0.0273 (9)0.0019 (8)0.0106 (8)0.0102 (8)
C120.0291 (11)0.0273 (11)0.0250 (11)0.0036 (9)0.0073 (9)0.0107 (9)
N130.0280 (9)0.0239 (9)0.0240 (9)0.0019 (7)0.0078 (7)0.0101 (7)
C140.0233 (10)0.0225 (10)0.0236 (10)0.0057 (8)0.0060 (8)0.0072 (8)
C150.0247 (10)0.0216 (10)0.0241 (10)0.0049 (8)0.0038 (8)0.0085 (8)
C160.0270 (11)0.0209 (10)0.0294 (11)0.0025 (8)0.0070 (9)0.0078 (8)
N1210.0422 (12)0.0314 (11)0.0278 (10)0.0049 (9)0.0160 (9)0.0158 (9)
N1410.0273 (9)0.0193 (8)0.0220 (8)0.0028 (7)0.0068 (7)0.0070 (7)
C1420.0279 (11)0.0212 (10)0.0227 (10)0.0016 (8)0.0078 (8)0.0088 (8)
N1430.0375 (11)0.0261 (10)0.0267 (10)0.0044 (8)0.0121 (8)0.0055 (8)
C13A0.0321 (12)0.0251 (11)0.0285 (11)0.0032 (9)0.0055 (9)0.0045 (9)
C1440.0479 (15)0.0337 (13)0.0349 (13)0.0056 (11)0.0082 (11)0.0028 (11)
C1450.0470 (16)0.0310 (13)0.0494 (16)0.0092 (12)0.0005 (13)0.0068 (12)
C1460.0422 (15)0.0306 (13)0.0557 (17)0.0143 (11)0.0017 (12)0.0039 (12)
C1470.0336 (12)0.0263 (11)0.0390 (13)0.0076 (9)0.0055 (10)0.0064 (10)
C17A0.0260 (11)0.0220 (10)0.0275 (11)0.0012 (8)0.0031 (8)0.0061 (8)
C1710.0269 (11)0.0218 (10)0.0308 (11)0.0015 (8)0.0065 (9)0.0103 (9)
C1720.0282 (11)0.0306 (11)0.0330 (12)0.0071 (9)0.0024 (9)0.0148 (9)
C1730.0365 (13)0.0372 (13)0.0452 (15)0.0125 (11)0.0133 (11)0.0159 (11)
C1740.0379 (14)0.0328 (13)0.0587 (17)0.0135 (11)0.0089 (12)0.0191 (12)
C1750.0427 (14)0.0329 (13)0.0521 (16)0.0115 (11)0.0113 (12)0.0188 (12)
C1760.0444 (14)0.0271 (11)0.0334 (12)0.0072 (10)0.0122 (10)0.0097 (10)
C1770.070 (2)0.057 (2)0.094 (3)0.0417 (18)0.031 (2)0.0359 (19)
N1510.0259 (9)0.0249 (9)0.0239 (9)0.0059 (7)0.0024 (7)0.0097 (7)
C1570.0403 (13)0.0285 (12)0.0266 (11)0.0009 (10)0.0059 (10)0.0083 (9)
C1510.0313 (12)0.0330 (12)0.0286 (11)0.0043 (10)0.0017 (9)0.0118 (9)
C1520.0342 (12)0.0324 (12)0.0320 (12)0.0079 (10)0.0001 (10)0.0078 (10)
C1530.0404 (14)0.0433 (14)0.0284 (12)0.0133 (11)0.0001 (10)0.0074 (10)
C1540.0349 (13)0.0484 (15)0.0297 (12)0.0139 (11)0.0064 (10)0.0200 (11)
C1550.0378 (14)0.0399 (14)0.0381 (14)0.0015 (11)0.0023 (11)0.0186 (11)
C1560.0449 (15)0.0354 (13)0.0323 (13)0.0038 (11)0.0048 (11)0.0123 (10)
Cl140.0599 (5)0.0689 (5)0.0327 (3)0.0115 (4)0.0078 (3)0.0250 (3)
O1610.0395 (9)0.0280 (8)0.0334 (9)0.0084 (7)0.0169 (7)0.0133 (7)
C1610.088 (3)0.0500 (18)0.0565 (19)0.0356 (17)0.0506 (19)0.0287 (16)
N210.0276 (9)0.0257 (9)0.0229 (9)0.0016 (7)0.0065 (7)0.0091 (7)
C220.0308 (11)0.0257 (11)0.0229 (10)0.0016 (9)0.0076 (9)0.0094 (8)
N230.0304 (10)0.0268 (9)0.0248 (9)0.0020 (8)0.0066 (7)0.0109 (7)
C240.0267 (11)0.0295 (11)0.0190 (10)0.0047 (9)0.0041 (8)0.0079 (8)
C250.0299 (11)0.0238 (10)0.0208 (10)0.0031 (8)0.0061 (8)0.0089 (8)
C260.0277 (11)0.0229 (10)0.0208 (10)0.0015 (8)0.0045 (8)0.0064 (8)
N2210.0327 (11)0.0282 (10)0.0317 (10)0.0033 (8)0.0160 (9)0.0159 (8)
N2410.0247 (9)0.0273 (9)0.0244 (9)0.0026 (7)0.0046 (7)0.0094 (7)
C2420.0263 (10)0.0251 (10)0.0217 (10)0.0025 (8)0.0079 (8)0.0082 (8)
N2430.0301 (10)0.0310 (10)0.0329 (10)0.0056 (8)0.0089 (8)0.0092 (8)
C23A0.0278 (11)0.0277 (11)0.0364 (12)0.0031 (9)0.0048 (9)0.0048 (10)
C2440.0276 (12)0.0381 (14)0.0624 (18)0.0076 (11)0.0061 (12)0.0088 (13)
C2450.0324 (14)0.0437 (16)0.070 (2)0.0025 (12)0.0078 (14)0.0026 (15)
C2460.0403 (15)0.0429 (15)0.0545 (17)0.0007 (12)0.0153 (13)0.0055 (13)
C2470.0393 (14)0.0391 (14)0.0356 (13)0.0040 (11)0.0046 (11)0.0107 (11)
C27A0.0246 (11)0.0271 (11)0.0355 (12)0.0018 (9)0.0015 (9)0.0065 (9)
C2710.0308 (11)0.0261 (11)0.0253 (11)0.0022 (9)0.0061 (9)0.0056 (9)
C2720.0353 (12)0.0289 (11)0.0255 (11)0.0081 (9)0.0005 (9)0.0055 (9)
C2730.0392 (14)0.0342 (13)0.0427 (14)0.0126 (11)0.0016 (11)0.0053 (11)
C2740.0444 (15)0.0402 (14)0.0350 (13)0.0068 (12)0.0103 (11)0.0038 (11)
C2750.0490 (15)0.0463 (15)0.0245 (12)0.0061 (12)0.0006 (11)0.0118 (11)
C2760.0351 (13)0.0369 (13)0.0269 (11)0.0042 (10)0.0063 (9)0.0098 (10)
C2770.061 (2)0.068 (2)0.0447 (17)0.0172 (17)0.0191 (15)0.0109 (15)
N2510.0332 (10)0.0251 (9)0.0225 (9)0.0058 (8)0.0051 (7)0.0099 (7)
C2570.0379 (13)0.0274 (12)0.0373 (13)0.0001 (10)0.0152 (10)0.0136 (10)
C2510.0429 (14)0.0257 (11)0.0280 (11)0.0075 (10)0.0071 (10)0.0083 (9)
C2520.0351 (13)0.0351 (12)0.0345 (12)0.0109 (10)0.0025 (10)0.0158 (10)
C2530.0341 (13)0.0527 (16)0.0484 (15)0.0159 (12)0.0023 (11)0.0270 (13)
C2540.0558 (16)0.0397 (14)0.0338 (13)0.0247 (12)0.0019 (11)0.0182 (11)
C2550.073 (2)0.0254 (12)0.0481 (16)0.0057 (13)0.0201 (15)0.0126 (12)
C2560.0602 (19)0.0310 (13)0.0588 (18)0.0055 (12)0.0335 (15)0.0182 (13)
Cl240.0683 (5)0.0630 (5)0.0691 (5)0.0343 (4)0.0049 (4)0.0419 (4)
O2610.0283 (8)0.0267 (8)0.0357 (9)0.0027 (6)0.0132 (7)0.0133 (7)
C2610.0320 (13)0.0377 (14)0.0531 (16)0.0069 (10)0.0200 (12)0.0225 (12)
Geometric parameters (Å, º) top
N11—C161.315 (3)N21—C261.318 (3)
N11—C121.351 (3)N21—C221.356 (3)
C12—N1211.336 (3)C22—N2211.332 (3)
C12—N131.356 (3)C22—N231.358 (3)
N13—C141.326 (3)N23—C241.327 (3)
C14—C151.390 (3)C24—C251.393 (3)
C14—N1411.425 (3)C24—N2411.430 (3)
C15—N1511.401 (3)C25—N2511.394 (3)
C15—C161.421 (3)C25—C261.424 (3)
C16—O1611.342 (3)C26—O2611.338 (3)
N121—H12A0.85 (3)N221—H22A0.79 (3)
N121—H12B0.89 (3)N221—H22B0.82 (3)
N141—C1421.382 (3)N241—C2421.389 (3)
N141—C17A1.393 (3)N241—C27A1.392 (3)
C142—N1431.316 (3)C242—N2431.316 (3)
C142—C1711.467 (3)C242—C2711.459 (3)
N143—C13A1.393 (3)N243—C23A1.396 (3)
C13A—C1441.395 (3)C23A—C2441.390 (4)
C13A—C17A1.398 (3)C23A—C27A1.407 (3)
C144—C1451.374 (4)C244—C2451.368 (4)
C144—H1440.9500C244—H2440.9500
C145—C1461.389 (4)C245—C2461.377 (5)
C145—H1450.9500C245—H2450.9500
C146—C1471.382 (4)C246—C2471.390 (4)
C146—H1460.9500C246—H2460.9500
C147—C17A1.387 (3)C247—C27A1.390 (3)
C147—H1470.9500C247—H2470.9500
C171—C1721.393 (3)C271—C2721.379 (3)
C171—C1761.396 (3)C271—C2761.396 (3)
C172—C1731.392 (3)C272—C2731.380 (4)
C172—H1720.9500C272—H2720.9500
C173—C1741.393 (4)C273—C2741.398 (4)
C173—H1730.9500C273—H2730.9500
C174—C1751.384 (4)C274—C2751.387 (4)
C174—C1771.510 (4)C274—C2771.495 (4)
C175—C1761.386 (4)C275—C2761.384 (4)
C175—H1750.9500C275—H2750.9500
C176—H1760.9500C276—H2760.9500
C177—H17A0.9800C277—H27A0.9800
C177—H17B0.9800C277—H27B0.9800
C177—H17C0.9800C277—H27C0.9800
N151—C1571.272 (3)N251—C2571.263 (3)
C157—C1511.467 (3)C257—C2511.465 (3)
C157—H1570.9500C257—H2570.9500
C151—C1521.388 (3)C251—C2561.384 (4)
C151—C1561.391 (3)C251—C2521.387 (3)
C152—C1531.386 (3)C252—C2531.379 (3)
C152—H1520.9500C252—H2520.9500
C153—C1541.381 (4)C253—C2541.383 (4)
C153—H1530.9500C253—H2530.9500
C154—C1551.373 (4)C254—C2551.355 (4)
C154—Cl141.744 (2)C254—Cl241.747 (2)
C155—C1561.392 (3)C255—C2561.395 (4)
C155—H1550.9500C255—H2550.9500
C156—H1560.9500C256—H2560.9500
O161—C1611.440 (3)O261—C2611.446 (3)
C161—H16A0.9800C261—H26A0.9800
C161—H16B0.9800C261—H26B0.9800
C161—H16C0.9800C261—H26C0.9800
C16—N11—C12116.73 (18)C26—N21—C22117.12 (18)
N121—C12—N11118.6 (2)N221—C22—N21118.11 (19)
N121—C12—N13116.8 (2)N221—C22—N23117.3 (2)
N11—C12—N13124.63 (19)N21—C22—N23124.56 (19)
C14—N13—C12116.07 (18)C24—N23—C22115.75 (19)
N13—C14—C15125.32 (19)N23—C24—C25125.62 (19)
N13—C14—N141114.47 (18)N23—C24—N241114.59 (19)
C15—C14—N141120.19 (18)C25—C24—N241119.78 (18)
C14—C15—N151117.77 (18)C24—C25—N251117.34 (19)
C14—C15—C16112.69 (18)C24—C25—C26112.81 (18)
N151—C15—C16129.17 (19)N251—C25—C26129.83 (19)
N11—C16—O161118.61 (19)N21—C26—O261118.82 (18)
N11—C16—C15124.46 (19)N21—C26—C25123.90 (19)
O161—C16—C15116.89 (19)O261—C26—C25117.28 (18)
C12—N121—H12A120 (2)C22—N221—H22A117 (2)
C12—N121—H12B122 (2)C22—N221—H22B120 (2)
H12A—N121—H12B117 (3)H22A—N221—H22B122 (3)
C142—N141—C17A106.95 (17)C242—N241—C27A106.73 (18)
C142—N141—C14129.10 (18)C242—N241—C24126.70 (18)
C17A—N141—C14121.96 (18)C27A—N241—C24123.42 (19)
N143—C142—N141112.19 (19)N243—C242—N241112.5 (2)
N143—C142—C171123.28 (19)N243—C242—C271124.16 (19)
N141—C142—C171124.13 (19)N241—C242—C271123.27 (19)
C142—N143—C13A105.69 (18)C242—N243—C23A105.59 (19)
N143—C13A—C144130.3 (2)C244—C23A—N243131.1 (2)
N143—C13A—C17A110.1 (2)C244—C23A—C27A118.9 (2)
C144—C13A—C17A119.6 (2)N243—C23A—C27A110.0 (2)
C145—C144—C13A117.5 (2)C245—C244—C23A118.6 (3)
C145—C144—H144121.2C245—C244—H244120.7
C13A—C144—H144121.2C23A—C244—H244120.7
C144—C145—C146122.2 (2)C244—C245—C246122.0 (3)
C144—C145—H145118.9C244—C245—H245119.0
C146—C145—H145118.9C246—C245—H245119.0
C147—C146—C145121.5 (2)C245—C246—C247121.5 (3)
C147—C146—H146119.3C245—C246—H246119.2
C145—C146—H146119.3C247—C246—H246119.2
C146—C147—C17A116.2 (2)C246—C247—C27A116.2 (3)
C146—C147—H147121.9C246—C247—H247121.9
C17A—C147—H147121.9C27A—C247—H247121.9
C147—C17A—N141132.0 (2)C247—C27A—N241132.1 (2)
C147—C17A—C13A123.0 (2)C247—C27A—C23A122.7 (2)
N141—C17A—C13A105.05 (19)N241—C27A—C23A105.2 (2)
C172—C171—C176118.1 (2)C272—C271—C276118.4 (2)
C172—C171—C142122.30 (19)C272—C271—C242121.6 (2)
C176—C171—C142119.4 (2)C276—C271—C242120.0 (2)
C173—C172—C171120.7 (2)C271—C272—C273121.6 (2)
C173—C172—H172119.6C271—C272—H272119.2
C171—C172—H172119.6C273—C272—H272119.2
C172—C173—C174121.0 (3)C272—C273—C274120.5 (2)
C172—C173—H173119.5C272—C273—H273119.7
C174—C173—H173119.5C274—C273—H273119.7
C175—C174—C173118.0 (2)C275—C274—C273117.6 (2)
C175—C174—C177121.6 (3)C275—C274—C277121.4 (3)
C173—C174—C177120.4 (3)C273—C274—C277120.9 (3)
C174—C175—C176121.5 (2)C276—C275—C274121.8 (2)
C174—C175—H175119.2C276—C275—H275119.1
C176—C175—H175119.2C274—C275—H275119.1
C175—C176—C171120.6 (2)C275—C276—C271120.0 (2)
C175—C176—H176119.7C275—C276—H276120.0
C171—C176—H176119.7C271—C276—H276120.0
C174—C177—H17A109.5C274—C277—H27A109.5
C174—C177—H17B109.5C274—C277—H27B109.5
H17A—C177—H17B109.5H27A—C277—H27B109.5
C174—C177—H17C109.5C274—C277—H27C109.5
H17A—C177—H17C109.5H27A—C277—H27C109.5
H17B—C177—H17C109.5H27B—C277—H27C109.5
C157—N151—C15124.16 (19)C257—N251—C25126.0 (2)
N151—C157—C151121.0 (2)N251—C257—C251120.4 (2)
N151—C157—H157119.5N251—C257—H257119.8
C151—C157—H157119.5C251—C257—H257119.8
C152—C151—C156119.0 (2)C256—C251—C252118.5 (2)
C152—C151—C157122.6 (2)C256—C251—C257120.5 (2)
C156—C151—C157118.4 (2)C252—C251—C257121.0 (2)
C153—C152—C151120.2 (2)C253—C252—C251120.4 (2)
C153—C152—H152119.9C253—C252—H252119.8
C151—C152—H152119.9C251—C252—H252119.8
C154—C153—C152119.3 (2)C252—C253—C254119.5 (2)
C154—C153—H153120.3C252—C253—H253120.2
C152—C153—H153120.3C254—C253—H253120.2
C155—C154—C153122.0 (2)C255—C254—C253121.6 (2)
C155—C154—Cl14118.7 (2)C255—C254—Cl24118.9 (2)
C153—C154—Cl14119.3 (2)C253—C254—Cl24119.5 (2)
C154—C155—C156118.1 (2)C254—C255—C256118.5 (3)
C154—C155—H155121.0C254—C255—H255120.8
C156—C155—H155121.0C256—C255—H255120.8
C151—C156—C155121.3 (2)C251—C256—C255121.4 (3)
C151—C156—H156119.3C251—C256—H256119.3
C155—C156—H156119.3C255—C256—H256119.3
C16—O161—C161116.70 (19)C26—O261—C261116.35 (17)
O161—C161—H16A109.5O261—C261—H26A109.5
O161—C161—H16B109.5O261—C261—H26B109.5
H16A—C161—H16B109.5H26A—C261—H26B109.5
O161—C161—H16C109.5O261—C261—H26C109.5
H16A—C161—H16C109.5H26A—C261—H26C109.5
H16B—C161—H16C109.5H26B—C261—H26C109.5
C16—N11—C12—N121177.3 (2)C26—N21—C22—N221177.4 (2)
C16—N11—C12—N133.7 (4)C26—N21—C22—N233.8 (4)
N121—C12—N13—C14177.2 (2)N221—C22—N23—C24176.8 (2)
N11—C12—N13—C143.8 (4)N21—C22—N23—C244.4 (4)
C12—N13—C14—C151.2 (3)C22—N23—C24—C250.4 (4)
C12—N13—C14—N141176.64 (19)C22—N23—C24—N241179.6 (2)
N13—C14—C15—N151172.6 (2)N23—C24—C25—N251174.9 (2)
N141—C14—C15—N1515.1 (3)N241—C24—C25—N2515.1 (3)
N13—C14—C15—C161.0 (3)N23—C24—C25—C263.5 (3)
N141—C14—C15—C16178.74 (19)N241—C24—C25—C26176.5 (2)
C12—N11—C16—O161176.7 (2)C22—N21—C26—O261179.9 (2)
C12—N11—C16—C151.1 (4)C22—N21—C26—C250.8 (3)
C14—C15—C16—N111.1 (3)C24—C25—C26—N214.1 (3)
N151—C15—C16—N11171.7 (2)N251—C25—C26—N21174.1 (2)
C14—C15—C16—O161178.9 (2)C24—C25—C26—O261176.6 (2)
N151—C15—C16—O1616.1 (4)N251—C25—C26—O2615.2 (4)
N13—C14—N141—C142129.0 (2)N23—C24—N241—C242130.7 (2)
C15—C14—N141—C14253.0 (3)C25—C24—N241—C24249.3 (3)
N13—C14—N141—C17A69.3 (3)N23—C24—N241—C27A72.1 (3)
C15—C14—N141—C17A108.7 (2)C25—C24—N241—C27A107.9 (3)
C17A—N141—C142—N1430.4 (3)C27A—N241—C242—N2430.9 (3)
C14—N141—C142—N143163.5 (2)C24—N241—C242—N243159.4 (2)
C17A—N141—C142—C171172.5 (2)C27A—N241—C242—C271175.6 (2)
C14—N141—C142—C17123.7 (3)C24—N241—C242—C27124.1 (3)
N141—C142—N143—C13A0.4 (3)N241—C242—N243—C23A0.3 (3)
C171—C142—N143—C13A173.3 (2)C271—C242—N243—C23A176.9 (2)
C142—N143—C13A—C144179.7 (3)C242—N243—C23A—C244179.2 (3)
C142—N143—C13A—C17A1.0 (3)C242—N243—C23A—C27A1.5 (3)
N143—C13A—C144—C145178.2 (3)N243—C23A—C244—C245177.5 (3)
C17A—C13A—C144—C1451.0 (4)C27A—C23A—C244—C2451.7 (4)
C13A—C144—C145—C1460.3 (4)C23A—C244—C245—C2461.0 (4)
C144—C145—C146—C1470.7 (5)C244—C245—C246—C2470.2 (5)
C145—C146—C147—C17A1.0 (4)C245—C246—C247—C27A0.6 (4)
C146—C147—C17A—N141179.6 (2)C246—C247—C27A—N241179.8 (3)
C146—C147—C17A—C13A0.4 (4)C246—C247—C27A—C23A0.1 (4)
C142—N141—C17A—C147179.0 (2)C242—N241—C27A—C247178.4 (3)
C14—N141—C17A—C14715.8 (4)C24—N241—C27A—C24720.6 (4)
C142—N141—C17A—C13A1.0 (2)C242—N241—C27A—C23A1.7 (2)
C14—N141—C17A—C13A164.29 (19)C24—N241—C27A—C23A159.4 (2)
N143—C13A—C17A—C147178.7 (2)C244—C23A—C27A—C2471.3 (4)
C144—C13A—C17A—C1470.7 (4)N243—C23A—C27A—C247178.1 (2)
N143—C13A—C17A—N1411.3 (3)C244—C23A—C27A—N241178.6 (2)
C144—C13A—C17A—N141179.4 (2)N243—C23A—C27A—N2412.0 (3)
N143—C142—C171—C172150.7 (2)N243—C242—C271—C272150.1 (2)
N141—C142—C171—C17221.4 (3)N241—C242—C271—C27226.0 (3)
N143—C142—C171—C17623.8 (3)N243—C242—C271—C27626.2 (3)
N141—C142—C171—C176164.1 (2)N241—C242—C271—C276157.7 (2)
C176—C171—C172—C1730.5 (3)C276—C271—C272—C2731.7 (3)
C142—C171—C172—C173175.0 (2)C242—C271—C272—C273178.1 (2)
C171—C172—C173—C1740.9 (4)C271—C272—C273—C2741.3 (4)
C172—C173—C174—C1750.5 (4)C272—C273—C274—C2750.3 (4)
C172—C173—C174—C177178.9 (3)C272—C273—C274—C277178.1 (3)
C173—C174—C175—C1760.5 (4)C273—C274—C275—C2761.4 (4)
C177—C174—C175—C176178.0 (3)C277—C274—C275—C276176.9 (3)
C174—C175—C176—C1710.9 (4)C274—C275—C276—C2711.0 (4)
C172—C171—C176—C1750.5 (4)C272—C271—C276—C2750.6 (3)
C142—C171—C176—C175174.3 (2)C242—C271—C276—C275177.0 (2)
C14—C15—N151—C157171.8 (2)C24—C25—N251—C257175.7 (2)
C16—C15—N151—C15715.8 (4)C26—C25—N251—C2576.2 (4)
C15—N151—C157—C151177.4 (2)C25—N251—C257—C251178.5 (2)
N151—C157—C151—C1524.9 (4)N251—C257—C251—C256180.0 (3)
N151—C157—C151—C156173.3 (3)N251—C257—C251—C2520.4 (4)
C156—C151—C152—C1530.5 (4)C256—C251—C252—C2530.1 (4)
C157—C151—C152—C153177.8 (2)C257—C251—C252—C253179.7 (3)
C151—C152—C153—C1541.7 (4)C251—C252—C253—C2540.6 (4)
C152—C153—C154—C1552.5 (4)C252—C253—C254—C2550.7 (4)
C152—C153—C154—Cl14177.2 (2)C252—C253—C254—Cl24179.3 (2)
C153—C154—C155—C1561.2 (4)C253—C254—C255—C2560.2 (5)
Cl14—C154—C155—C156178.6 (2)Cl24—C254—C255—C256179.8 (3)
C152—C151—C156—C1551.9 (4)C252—C251—C256—C2550.4 (5)
C157—C151—C156—C155176.4 (3)C257—C251—C256—C255179.2 (3)
C154—C155—C156—C1511.1 (4)C254—C255—C256—C2510.3 (5)
N11—C16—O161—C1612.2 (4)N21—C26—O261—C2615.9 (3)
C15—C16—O161—C161179.8 (3)C25—C26—O261—C261174.8 (2)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N121—H12A···N230.86 (3)2.18 (3)3.016 (3)168 (3)
N121—H12B···N243i0.89 (3)2.21 (3)3.043 (3)158 (3)
N221—H22A···N130.78 (3)2.23 (3)3.012 (3)173 (3)
N221—H22B···N143ii0.82 (3)2.18 (3)2.988 (3)168 (3)
C146—H146···N151iii0.952.583.404 (4)146
C176—H176···N21ii0.952.573.449 (3)154
C155—H155···Cg1iv0.952.553.391 (3)147
C255—H255···Cg2v0.952.853.754 (3)160
Symmetry codes: (i) x+1, y+1, z+2; (ii) x, y+1, z+1; (iii) x+1, y+1, z+1; (iv) x+1, y+2, z+1; (v) x, y, z+2.
(E)-4-Methoxy-5-[(4-chlorobenzylidene)amino]-6-[2-(4-methylphenyl)-1H-benzo[d]imidazol-1-yl]pyrimidin-2-amine (VIb) top
Crystal data top
C26H21ClN6OZ = 2
Mr = 468.94F(000) = 488
Triclinic, P1Dx = 1.224 Mg m3
a = 9.6520 (8) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.7408 (10) ÅCell parameters from 5851 reflections
c = 14.1445 (12) Åθ = 2.1–27.5°
α = 98.183 (4)°µ = 0.18 mm1
β = 104.638 (3)°T = 100 K
γ = 90.059 (4)°Plate, yellow
V = 1272.6 (2) Å30.12 × 0.09 × 0.08 mm
Data collection top
Bruker D8 Venture
diffractometer
5849 independent reflections
Radiation source: INCOATEC high brilliance microfocus sealed tube4653 reflections with I > 2σ(I)
Multilayer mirror monochromatorRint = 0.074
φ and ω scansθmax = 27.5°, θmin = 2.3°
Absorption correction: multi-scan
(SADABS; Bruker, 2016)
h = 1212
Tmin = 0.916, Tmax = 0.986k = 1212
60695 measured reflectionsl = 1818
Refinement top
Refinement on F2Primary atom site location: dual
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.050H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.115 w = 1/[σ2(Fo2) + (0.0312P)2 + 1.4226P]
where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
5849 reflectionsΔρmax = 0.34 e Å3
315 parametersΔρmin = 0.53 e Å3
0 restraints
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N10.03612 (15)0.68107 (16)0.74950 (11)0.0171 (3)
C20.03059 (18)0.61398 (18)0.65740 (13)0.0160 (3)
N30.14638 (15)0.57773 (15)0.62317 (10)0.0153 (3)
C40.27199 (17)0.59837 (17)0.69062 (12)0.0140 (3)
C50.29105 (17)0.65195 (18)0.78952 (12)0.0153 (3)
C60.16281 (18)0.69867 (18)0.81240 (12)0.0163 (3)
N210.09903 (16)0.58655 (18)0.59557 (12)0.0213 (3)
H21A0.107 (2)0.542 (2)0.5380 (18)0.026*
H21B0.179 (2)0.600 (2)0.6164 (16)0.026*
N410.39498 (14)0.56386 (15)0.65574 (10)0.0137 (3)
C420.52077 (17)0.64373 (18)0.67274 (12)0.0141 (3)
N430.62314 (15)0.57292 (15)0.64527 (10)0.0156 (3)
C43A0.56511 (18)0.43932 (18)0.60946 (12)0.0157 (3)
C440.6288 (2)0.32167 (19)0.57234 (13)0.0198 (4)
H440.72510.32530.56740.024*
C450.5454 (2)0.1998 (2)0.54317 (14)0.0233 (4)
H450.58550.11820.51760.028*
C460.4037 (2)0.19366 (19)0.55027 (14)0.0219 (4)
H460.35030.10790.52940.026*
C470.33895 (19)0.30883 (18)0.58677 (13)0.0176 (4)
H470.24300.30450.59220.021*
C47A0.42253 (18)0.43100 (18)0.61490 (12)0.0149 (3)
C710.53513 (18)0.79222 (18)0.71213 (12)0.0156 (3)
C720.42003 (18)0.87996 (18)0.69585 (12)0.0162 (3)
H720.32820.84370.65790.019*
C730.4387 (2)1.01970 (19)0.73461 (13)0.0193 (4)
H730.35881.07770.72360.023*
C740.5723 (2)1.07686 (19)0.78945 (13)0.0216 (4)
C750.6867 (2)0.9883 (2)0.80476 (15)0.0263 (4)
H750.77881.02490.84190.032*
C760.6694 (2)0.8482 (2)0.76705 (14)0.0233 (4)
H760.74910.79010.77860.028*
C770.5936 (2)1.2303 (2)0.82597 (15)0.0281 (4)
H77A0.63221.27570.78000.042*
H77B0.66101.24550.89150.042*
H77C0.50151.26960.83010.042*
N510.42618 (15)0.64448 (16)0.85395 (11)0.0176 (3)
C570.47980 (19)0.7367 (2)0.92717 (13)0.0211 (4)
H570.42840.81730.94030.025*
C510.62249 (19)0.7181 (2)0.99163 (13)0.0201 (4)
C520.6904 (2)0.5935 (2)0.98118 (15)0.0267 (4)
H520.64570.52020.93080.032*
C530.8225 (2)0.5750 (2)1.04349 (17)0.0323 (5)
H530.86870.48941.03620.039*
C540.8864 (2)0.6820 (2)1.11626 (15)0.0279 (4)
Cl541.05226 (6)0.65619 (7)1.19494 (5)0.04823 (18)
C550.8227 (2)0.8073 (3)1.12703 (17)0.0386 (6)
H550.86870.88071.17680.046*
C560.6902 (2)0.8253 (2)1.06430 (16)0.0344 (5)
H560.64550.91171.07110.041*
O610.17378 (13)0.76209 (14)0.90545 (9)0.0213 (3)
C610.0420 (2)0.8045 (2)0.92910 (14)0.0286 (5)
H61A0.00000.87590.88940.043*
H61B0.06170.84220.99940.043*
H61C0.02520.72420.91460.043*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0137 (7)0.0224 (8)0.0150 (7)0.0013 (6)0.0044 (6)0.0009 (6)
C20.0123 (8)0.0201 (9)0.0156 (8)0.0001 (6)0.0038 (6)0.0021 (7)
N30.0106 (6)0.0198 (7)0.0147 (7)0.0002 (5)0.0028 (5)0.0007 (6)
C40.0109 (7)0.0149 (8)0.0167 (8)0.0012 (6)0.0044 (6)0.0021 (6)
C50.0124 (8)0.0191 (9)0.0140 (8)0.0004 (6)0.0026 (6)0.0026 (7)
C60.0169 (8)0.0182 (9)0.0138 (8)0.0006 (7)0.0043 (7)0.0012 (7)
N210.0101 (7)0.0362 (10)0.0159 (8)0.0004 (6)0.0041 (6)0.0038 (7)
N410.0108 (6)0.0157 (7)0.0134 (7)0.0005 (5)0.0023 (5)0.0005 (5)
C420.0095 (7)0.0196 (8)0.0121 (8)0.0005 (6)0.0012 (6)0.0018 (6)
N430.0123 (7)0.0193 (7)0.0144 (7)0.0014 (5)0.0025 (5)0.0015 (6)
C43A0.0145 (8)0.0189 (9)0.0133 (8)0.0034 (6)0.0020 (6)0.0034 (7)
C440.0196 (9)0.0226 (9)0.0189 (9)0.0073 (7)0.0071 (7)0.0044 (7)
C450.0318 (10)0.0189 (9)0.0200 (9)0.0091 (8)0.0086 (8)0.0022 (7)
C460.0285 (10)0.0157 (9)0.0195 (9)0.0007 (7)0.0031 (8)0.0014 (7)
C470.0174 (8)0.0183 (9)0.0154 (8)0.0010 (7)0.0017 (7)0.0016 (7)
C47A0.0159 (8)0.0170 (8)0.0110 (8)0.0032 (6)0.0027 (6)0.0011 (6)
C710.0146 (8)0.0177 (8)0.0143 (8)0.0005 (6)0.0040 (6)0.0013 (7)
C720.0139 (8)0.0197 (9)0.0142 (8)0.0001 (6)0.0027 (6)0.0016 (7)
C730.0216 (9)0.0206 (9)0.0158 (8)0.0044 (7)0.0050 (7)0.0032 (7)
C740.0291 (10)0.0183 (9)0.0163 (9)0.0025 (7)0.0048 (7)0.0005 (7)
C750.0192 (9)0.0239 (10)0.0286 (10)0.0050 (7)0.0030 (8)0.0029 (8)
C760.0166 (9)0.0228 (10)0.0268 (10)0.0007 (7)0.0001 (7)0.0009 (8)
C770.0366 (11)0.0189 (10)0.0251 (10)0.0032 (8)0.0039 (9)0.0014 (8)
N510.0117 (7)0.0265 (8)0.0140 (7)0.0002 (6)0.0018 (6)0.0033 (6)
C570.0177 (9)0.0251 (10)0.0191 (9)0.0033 (7)0.0036 (7)0.0004 (7)
C510.0161 (8)0.0285 (10)0.0147 (8)0.0004 (7)0.0020 (7)0.0028 (7)
C520.0247 (10)0.0235 (10)0.0270 (10)0.0032 (8)0.0018 (8)0.0026 (8)
C530.0257 (10)0.0277 (11)0.0387 (12)0.0023 (8)0.0030 (9)0.0092 (9)
C540.0132 (8)0.0424 (12)0.0246 (10)0.0013 (8)0.0052 (7)0.0109 (9)
Cl540.0240 (3)0.0607 (4)0.0478 (4)0.0011 (3)0.0163 (2)0.0141 (3)
C550.0267 (11)0.0459 (14)0.0303 (12)0.0004 (10)0.0069 (9)0.0114 (10)
C560.0246 (10)0.0383 (12)0.0309 (11)0.0072 (9)0.0017 (9)0.0098 (10)
O610.0155 (6)0.0319 (7)0.0144 (6)0.0027 (5)0.0037 (5)0.0035 (5)
C610.0202 (9)0.0452 (13)0.0185 (9)0.0072 (9)0.0074 (8)0.0057 (9)
Geometric parameters (Å, º) top
N1—C61.312 (2)C72—H720.9500
N1—C21.360 (2)C73—C741.394 (3)
C2—N211.335 (2)C73—H730.9500
C2—N31.354 (2)C74—C751.395 (3)
N3—C41.334 (2)C74—C771.507 (3)
C4—C51.388 (2)C75—C761.387 (3)
C4—N411.420 (2)C75—H750.9500
C5—N511.398 (2)C76—H760.9500
C5—C61.416 (2)C77—H77A0.9800
C6—O611.350 (2)C77—H77B0.9800
N21—H21A0.85 (2)C77—H77C0.9800
N21—H21B0.90 (2)N51—C571.269 (2)
N41—C421.391 (2)C57—C511.474 (2)
N41—C47A1.395 (2)C57—H570.9500
C42—N431.312 (2)C51—C521.387 (3)
C42—C711.467 (2)C51—C561.388 (3)
N43—C43A1.390 (2)C52—C531.383 (3)
C43A—C441.400 (2)C52—H520.9500
C43A—C47A1.401 (2)C53—C541.378 (3)
C44—C451.385 (3)C53—H530.9500
C44—H440.9500C54—C551.374 (3)
C45—C461.398 (3)C54—Cl541.7446 (19)
C45—H450.9500C55—C561.387 (3)
C46—C471.384 (3)C55—H550.9500
C46—H460.9500C56—H560.9500
C47—C47A1.388 (2)O61—C611.441 (2)
C47—H470.9500C61—H61A0.9800
C71—C721.395 (2)C61—H61B0.9800
C71—C761.396 (2)C61—H61C0.9800
C72—C731.387 (3)
C6—N1—C2116.86 (14)C72—C73—C74121.34 (17)
N21—C2—N3118.02 (16)C72—C73—H73119.3
N21—C2—N1117.05 (15)C74—C73—H73119.3
N3—C2—N1124.89 (15)C73—C74—C75117.70 (17)
C4—N3—C2114.98 (14)C73—C74—C77121.00 (18)
N3—C4—C5125.61 (15)C75—C74—C77121.22 (18)
N3—C4—N41115.85 (14)C76—C75—C74121.58 (17)
C5—C4—N41118.54 (14)C76—C75—H75119.2
C4—C5—N51118.29 (15)C74—C75—H75119.2
C4—C5—C6113.10 (15)C75—C76—C71120.17 (17)
N51—C5—C6128.42 (15)C75—C76—H76119.9
N1—C6—O61119.20 (15)C71—C76—H76119.9
N1—C6—C5123.85 (16)C74—C77—H77A109.5
O61—C6—C5116.93 (15)C74—C77—H77B109.5
C2—N21—H21A119.7 (15)H77A—C77—H77B109.5
C2—N21—H21B121.4 (14)C74—C77—H77C109.5
H21A—N21—H21B118 (2)H77A—C77—H77C109.5
C42—N41—C47A106.54 (13)H77B—C77—H77C109.5
C42—N41—C4127.65 (14)C57—N51—C5123.74 (16)
C47A—N41—C4124.64 (14)N51—C57—C51119.55 (17)
N43—C42—N41112.40 (15)N51—C57—H57120.2
N43—C42—C71123.74 (15)C51—C57—H57120.2
N41—C42—C71123.79 (14)C52—C51—C56119.12 (18)
C42—N43—C43A105.65 (14)C52—C51—C57120.69 (17)
N43—C43A—C44129.49 (16)C56—C51—C57120.19 (18)
N43—C43A—C47A110.40 (15)C53—C52—C51120.58 (19)
C44—C43A—C47A120.11 (16)C53—C52—H52119.7
C45—C44—C43A117.06 (17)C51—C52—H52119.7
C45—C44—H44121.5C54—C53—C52119.2 (2)
C43A—C44—H44121.5C54—C53—H53120.4
C44—C45—C46121.81 (17)C52—C53—H53120.4
C44—C45—H45119.1C55—C54—C53121.33 (18)
C46—C45—H45119.1C55—C54—Cl54120.07 (16)
C47—C46—C45121.95 (17)C53—C54—Cl54118.59 (17)
C47—C46—H46119.0C54—C55—C56119.2 (2)
C45—C46—H46119.0C54—C55—H55120.4
C46—C47—C47A116.02 (16)C56—C55—H55120.4
C46—C47—H47122.0C55—C56—C51120.6 (2)
C47A—C47—H47122.0C55—C56—H56119.7
C47—C47A—N41131.90 (16)C51—C56—H56119.7
C47—C47A—C43A123.04 (16)C6—O61—C61116.52 (14)
N41—C47A—C43A105.01 (14)O61—C61—H61A109.5
C72—C71—C76118.74 (16)O61—C61—H61B109.5
C72—C71—C42122.49 (15)H61A—C61—H61B109.5
C76—C71—C42118.76 (16)O61—C61—H61C109.5
C73—C72—C71120.46 (16)H61A—C61—H61C109.5
C73—C72—H72119.8H61B—C61—H61C109.5
C71—C72—H72119.8
C6—N1—C2—N21175.07 (17)C42—N41—C47A—C43A0.19 (18)
C6—N1—C2—N37.4 (3)C4—N41—C47A—C43A168.60 (15)
N21—C2—N3—C4175.16 (16)N43—C43A—C47A—C47178.13 (16)
N1—C2—N3—C47.3 (3)C44—C43A—C47A—C471.4 (3)
C2—N3—C4—C50.2 (3)N43—C43A—C47A—N410.29 (19)
C2—N3—C4—N41178.67 (15)C44—C43A—C47A—N41179.26 (15)
N3—C4—C5—N51168.95 (16)N43—C42—C71—C72147.26 (17)
N41—C4—C5—N5112.2 (2)N41—C42—C71—C7229.4 (3)
N3—C4—C5—C66.5 (3)N43—C42—C71—C7632.0 (3)
N41—C4—C5—C6172.36 (15)N41—C42—C71—C76151.33 (17)
C2—N1—C6—O61178.62 (16)C76—C71—C72—C730.8 (3)
C2—N1—C6—C50.1 (3)C42—C71—C72—C73179.98 (16)
C4—C5—C6—N16.4 (3)C71—C72—C73—C740.9 (3)
N51—C5—C6—N1168.45 (18)C72—C73—C74—C750.5 (3)
C4—C5—C6—O61175.07 (16)C72—C73—C74—C77176.20 (18)
N51—C5—C6—O6110.1 (3)C73—C74—C75—C760.0 (3)
N3—C4—N41—C42131.91 (18)C77—C74—C75—C76176.67 (19)
C5—C4—N41—C4247.0 (2)C74—C75—C76—C710.1 (3)
N3—C4—N41—C47A62.2 (2)C72—C71—C76—C750.3 (3)
C5—C4—N41—C47A118.89 (18)C42—C71—C76—C75179.58 (18)
C47A—N41—C42—N430.64 (19)C4—C5—N51—C57145.43 (18)
C4—N41—C42—N43168.59 (15)C6—C5—N51—C5739.9 (3)
C47A—N41—C42—C71177.66 (15)C5—N51—C57—C51179.10 (16)
C4—N41—C42—C7114.4 (3)N51—C57—C51—C528.5 (3)
N41—C42—N43—C43A0.80 (19)N51—C57—C51—C56171.95 (19)
C71—C42—N43—C43A177.82 (16)C56—C51—C52—C531.3 (3)
C42—N43—C43A—C44178.82 (18)C57—C51—C52—C53178.24 (19)
C42—N43—C43A—C47A0.67 (19)C51—C52—C53—C540.1 (3)
N43—C43A—C44—C45178.78 (17)C52—C53—C54—C551.1 (4)
C47A—C43A—C44—C450.7 (3)C52—C53—C54—Cl54179.36 (17)
C43A—C44—C45—C460.0 (3)C53—C54—C55—C561.1 (4)
C44—C45—C46—C470.0 (3)Cl54—C54—C55—C56179.40 (19)
C45—C46—C47—C47A0.7 (3)C54—C55—C56—C510.2 (4)
C46—C47—C47A—N41178.56 (17)C52—C51—C56—C551.3 (3)
C46—C47—C47A—C43A1.4 (3)C57—C51—C56—C55178.2 (2)
C42—N41—C47A—C47177.38 (18)N1—C6—O61—C610.9 (2)
C4—N41—C47A—C479.0 (3)C5—C6—O61—C61177.71 (17)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N21—H21A···N3i0.85 (2)2.35 (2)3.196 (2)175.9 (19)
N21—H21B···N43ii0.90 (2)2.08 (2)2.946 (2)163.6 (19)
C72—H72···Cg50.952.973.5865 (19)124
Symmetry codes: (i) x, y+1, z+1; (ii) x1, y, z.
Selected torsion angles (°) for intermediates (II) and (III) top
Angle(II)(III)
N3—C4—CN41—C42-59.42 (19)-59.7 (3)
N3—C4—N41—C47A104.71 (15)103.3 (2)
N41—C42—C71—C72-34.0 (2)-33.9 (3)
C5—C6—O61—C61177.09 (17)177.67 (17)
Selected torsion angles (°) for products (IV)–(VI) top
Angle(IV)(V)(V)(VIa)(VIa)(VIb)
x = nilx = 1x = 2x = 1x = 2x = nil
φ1136.6 (2)129.54 (18)130.72 (18)179.0 (2)130.7 (2)121.91 (18)
φ2-58.1 (3)-68.6 (2)-70.2 (2)-69.3 (3)-72.1 (3)-62.7 (2)
φ3-15.6 (3)-21.6 (3)-25.7 (2)-21.4 (3)-26.0 (3)-29.4 (3)
φ4177.0 (2)171.48 (17)173.80 (18)171.8 (2)175.7 (2)145.43 (18)
φ5-4.3 (3)-2.9 (3)3.8 (3)-4.9 (4)0.4 (4)-3.5 (3)
φ6-176.38 (18)-174.4 (2)177.12 (17)179.8 (3)174.8 (2)-177.71 (17)
Notes: φ1 represents the torsion angle Nx3—Cx4—Nx41—Cx42; φ2 represents the torsion angles N3—C4—N41—C47A in (IV) and (VIb), and Cx4—Nx41—Nx41—Cx7A in (V) and (VIa) (see Figs. 3–6); φ3 represents the torsion angle Nx41—Cx42—Cx71—Cx72 φ4 represents the torsion angle Cx4—Cx5—Nx51—Cx57 φ5 represents the torsion angle Nx51—Cx57—Cx51—Cx52 φ6 represents the torsion angle Cx5—Cx6—Ox61—Cx61
Hydrogen bonds and short intramolecular contacts (Å, °) for compounds (II)–(VI) top
CompoundD—H···AD—HH···AD···AD—H···A
(II)N21—H21A···O810.90 (2)2.10 (2)2.989 (2)171.1 (18)
N21—H21B···O81i0.86 (2)2.094 (19)2.8840 (18)153.0 (18)
N51—H51A···O610.85 (2)2.41 (2)2.7059 (17)101.1 (17)
N51—H51B···N410.90 (2)2.571 (19)2.888 (2)101.5 (14)
O81—H81A···N43ii0.87 (2)1.98 (2)2.8506 (19)178 (2)
O81—H81B···N51iii0.84 (2)2.11 (2)2.927 (2)164 (2)
(III)N21—H21A···O810.83 (3)2.17 (3)2.992 (3)172 (3)
N21—H21B···O81i0.87 (3)2.07 (3)2.880 (3)154 (2)
N51—H51A···O610.91 (3)2.41 (3)2.706 (2)98 (2)
N51—H51B···N410.88 (3)2.56 (3)2.885 (3)103 (2)
O81—H81A···N43ii0.83 (3)2.03 (3)2.862 (3)178 (4)
O81—H81B···N51iii0.86 (3)2.11 (3)2.932 (3)159 (3)
(IV)N21—H21Z···O810.89 (3)1.94 (3)2.826 (3)173 (2)
N21—H21B···N1iv0.86 (3)2.32 (3)3.161 (3)166 (3)
(V)N121—H12A···N230.90 (2)2.13 (2)3.022 (2)171.5 (19)
N121—H12B···N243v0.92 (2)2.18 (2)3.062 (2)160 (2)
N221—H22A···N130.84 (2)2.19 (2)3.023 (2)173.4 (19)
N221—H22B···N143ii0.90 (2)2.11 (2)2.994 (2)169 (2)
C146—H1?46···N151ii0.952.573.390 (3)145
C176—H176···N21vi0.952.583.464 (2)154
C155—H155···Cg1iv0.952.603.465 (2)151
C255—H255···Cg2vii0.952.873.784 (2)163
(VIa)N121—H12A···N230.86 (3)2.18 (3)3.016 (3)168 (3)
N121—H12B···N243v0.89 (3)2.21 (3)3.043 (3)158 (3)
N221—H22A···N130.78 (3)2.23 (3)3.012 (3)173 (3)
N221—H22B···N143ii0.82 (3)2.18 (3)2.988 (3)168 (3)
C146—H1?46···N151ii0.952.583.404 (4)146
C176—H176···N21vi0.952.573.449 (3)154
C155—H155···Cg1iv0.952.553.391 (3)147
C255—H255···Cg2vii0.952.853.754 (3)160
(VIb)N21—H21A···N3vi0.85 (2)2.35 (2)3.196 (2)175.9 (19)
N21—H21B···N43viii0.90 (2)2.08 (2)2.946 (2)163.6 (19)
Cg1 and Cg2 represent the centroids of the C171–C176 and C271–C276 rings, respectively

Symmetry codes: (i) -x+1, -y+1, -z; (ii) -x+1, -y+1, -z+1; (iii) -x+1, -y, -z; (iv) -x+1, -y+2, -z+1; (v) -x+1, -y+1, -z+2; (vi) -x, -y+1, -z+1; (vii) -x, -y, -z+2.
 

Acknowledgements

The authors thank Centro de Instrumentación Científico-Técnica of Universidad de Jaén for data collection. DV thanks Asociación Universitaria Iberoamericana de Postgrado (AUIP) for a Scholar-Fellowship and acknowledges financial support from the Universidad de Ciencias Aplicadas y Ambientales (UDCA). JC is grateful for financial support from the Spanish Ministerio de Ciencia, Innovacíon, y Universidades, the Universidad de Jaén, Vicerrectorado de Investigación, PAIUJA Acción 1 plan 2019–2020 and 2021–2022, and Consejería de Innovación, Ciencia y Empresa (Junta de Andalucía, Spain).

Funding information

Funding for this research was provided by: Spanish Ministerio de Ciencia, Innovacíon, y Universidades (R&D project No. RTI2018-098560-B-C22), co-financed by the FEDER funds of the European Union.

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