Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270109038487/dn3126sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270109038487/dn3126Isup2.hkl |
CCDC reference: 760127
Compound (I) was obtained from our laboratory (Reference to synthesis?) and crystals suitable for X-ray analysis were obtained by recrystallization from dimethylformamide.
All H atoms were placed in idealized positions and allowed to ride on their parent atoms, with C—H = 0.93 (aromatic), 0.97 (CH2) or 0.96 Å (CH3) and N—H = 0.86 Å, and with Uiso(H) = 1.2Ueq(C,N) (1.5 for methyl C).
Data collection: SMART (Bruker, 1997); cell refinement: SAINT (Bruker, 1997); data reduction: SAINT (Bruker, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
C18H20F2N4O2S | Z = 2 |
Mr = 394.44 | F(000) = 412 |
Triclinic, P1 | Dx = 1.447 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 6.6019 (8) Å | Cell parameters from 2659 reflections |
b = 11.1195 (13) Å | θ = 3.0–25.5° |
c = 13.9076 (17) Å | µ = 0.22 mm−1 |
α = 106.693 (1)° | T = 296 K |
β = 102.362 (1)° | Block, colourless |
γ = 103.715 (1)° | 0.31 × 0.28 × 0.23 mm |
V = 905.31 (19) Å3 |
Bruker SMART CCD area-detector diffractometer | 3341 independent reflections |
Radiation source: fine-focus sealed tube | 2683 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.015 |
ϕ and ω scans | θmax = 25.5°, θmin = 3.0° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | h = −7→7 |
Tmin = 0.935, Tmax = 0.951 | k = −13→13 |
6772 measured reflections | l = −16→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.038 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.098 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0413P)2 + 0.2709P] where P = (Fo2 + 2Fc2)/3 |
3341 reflections | (Δ/σ)max < 0.001 |
246 parameters | Δρmax = 0.30 e Å−3 |
0 restraints | Δρmin = −0.24 e Å−3 |
C18H20F2N4O2S | γ = 103.715 (1)° |
Mr = 394.44 | V = 905.31 (19) Å3 |
Triclinic, P1 | Z = 2 |
a = 6.6019 (8) Å | Mo Kα radiation |
b = 11.1195 (13) Å | µ = 0.22 mm−1 |
c = 13.9076 (17) Å | T = 296 K |
α = 106.693 (1)° | 0.31 × 0.28 × 0.23 mm |
β = 102.362 (1)° |
Bruker SMART CCD area-detector diffractometer | 3341 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 2683 reflections with I > 2σ(I) |
Tmin = 0.935, Tmax = 0.951 | Rint = 0.015 |
6772 measured reflections |
R[F2 > 2σ(F2)] = 0.038 | 0 restraints |
wR(F2) = 0.098 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.30 e Å−3 |
3341 reflections | Δρmin = −0.24 e Å−3 |
246 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.23235 (9) | 0.30856 (5) | −0.04874 (4) | 0.05375 (16) | |
F1 | −0.62384 (18) | −0.05474 (14) | 0.24186 (11) | 0.0721 (4) | |
F2 | 0.0469 (2) | 0.32005 (16) | 0.50105 (12) | 0.0902 (5) | |
O1 | −0.2537 (2) | −0.09836 (15) | 0.30595 (13) | 0.0663 (4) | |
O2 | 0.3728 (2) | 0.22553 (15) | 0.50330 (11) | 0.0612 (4) | |
N1 | 0.1966 (3) | 0.53756 (15) | 0.26436 (12) | 0.0518 (4) | |
N2 | 0.3653 (3) | 0.51616 (16) | 0.12691 (12) | 0.0559 (4) | |
H2 | 0.4816 | 0.5355 | 0.1084 | 0.067* | |
N3 | 0.0144 (2) | 0.38053 (15) | 0.08834 (11) | 0.0459 (4) | |
N4 | −0.3316 (3) | 0.22545 (17) | 0.06919 (14) | 0.0581 (4) | |
H4 | −0.4429 | 0.2533 | 0.0664 | 0.070* | |
C1 | 0.3618 (4) | 0.60429 (19) | 0.22739 (16) | 0.0618 (6) | |
H1A | 0.5039 | 0.6328 | 0.2794 | 0.074* | |
H1B | 0.3319 | 0.6823 | 0.2183 | 0.074* | |
C2 | −0.0081 (3) | 0.4776 (2) | 0.18020 (15) | 0.0545 (5) | |
H2A | −0.0526 | 0.5459 | 0.1595 | 0.065* | |
H2B | −0.1205 | 0.4336 | 0.2048 | 0.065* | |
C3 | 0.1997 (3) | 0.40753 (18) | 0.06202 (14) | 0.0443 (4) | |
C4 | −0.1813 (3) | 0.2665 (2) | 0.01638 (15) | 0.0553 (5) | |
H4A | −0.2550 | 0.2913 | −0.0395 | 0.066* | |
H4B | −0.1342 | 0.1927 | −0.0158 | 0.066* | |
C5 | −0.2572 (3) | −0.01931 (18) | 0.24626 (15) | 0.0463 (4) | |
C6 | −0.4521 (3) | 0.00398 (18) | 0.21346 (15) | 0.0467 (4) | |
C7 | −0.4804 (3) | 0.08152 (18) | 0.15476 (14) | 0.0474 (4) | |
H7 | −0.6153 | 0.0940 | 0.1346 | 0.057* | |
C8 | −0.3054 (3) | 0.14196 (17) | 0.12523 (14) | 0.0437 (4) | |
C9 | −0.1091 (3) | 0.11870 (19) | 0.15612 (16) | 0.0500 (5) | |
H9 | 0.0092 | 0.1569 | 0.1365 | 0.060* | |
C10 | −0.0860 (3) | 0.03925 (18) | 0.21584 (16) | 0.0506 (5) | |
H10 | 0.0478 | 0.0253 | 0.2357 | 0.061* | |
C11 | −0.0492 (4) | −0.1131 (2) | 0.34785 (19) | 0.0692 (6) | |
H11A | −0.0010 | −0.1573 | 0.2912 | 0.104* | |
H11B | −0.0647 | −0.1647 | 0.3922 | 0.104* | |
H11C | 0.0566 | −0.0274 | 0.3885 | 0.104* | |
C12 | 0.2519 (3) | 0.45361 (17) | 0.32008 (13) | 0.0441 (4) | |
C13 | 0.1229 (3) | 0.42315 (19) | 0.38210 (15) | 0.0517 (5) | |
H13 | 0.0047 | 0.4544 | 0.3846 | 0.062* | |
C14 | 0.1714 (3) | 0.3471 (2) | 0.43909 (16) | 0.0529 (5) | |
C15 | 0.3456 (3) | 0.29858 (18) | 0.44038 (14) | 0.0464 (4) | |
C16 | 0.4728 (3) | 0.3289 (2) | 0.37880 (15) | 0.0507 (5) | |
H16 | 0.5919 | 0.2982 | 0.3774 | 0.061* | |
C17 | 0.4253 (3) | 0.40515 (19) | 0.31837 (14) | 0.0506 (5) | |
H17 | 0.5117 | 0.4235 | 0.2764 | 0.061* | |
C18 | 0.5573 (4) | 0.1807 (2) | 0.51179 (18) | 0.0651 (6) | |
H18A | 0.5484 | 0.1226 | 0.4438 | 0.098* | |
H18B | 0.5601 | 0.1338 | 0.5600 | 0.098* | |
H18C | 0.6884 | 0.2553 | 0.5373 | 0.098* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0602 (3) | 0.0619 (3) | 0.0455 (3) | 0.0250 (3) | 0.0179 (2) | 0.0224 (2) |
F1 | 0.0469 (7) | 0.0922 (9) | 0.0986 (10) | 0.0201 (6) | 0.0362 (7) | 0.0563 (8) |
F2 | 0.0990 (10) | 0.1321 (13) | 0.1154 (12) | 0.0667 (10) | 0.0783 (9) | 0.0959 (11) |
O1 | 0.0532 (8) | 0.0749 (10) | 0.0912 (11) | 0.0182 (7) | 0.0259 (8) | 0.0580 (9) |
O2 | 0.0640 (9) | 0.0706 (9) | 0.0674 (9) | 0.0253 (7) | 0.0227 (7) | 0.0459 (8) |
N1 | 0.0727 (11) | 0.0432 (9) | 0.0426 (9) | 0.0156 (8) | 0.0195 (8) | 0.0209 (7) |
N2 | 0.0660 (11) | 0.0525 (10) | 0.0475 (9) | 0.0062 (8) | 0.0228 (8) | 0.0215 (8) |
N3 | 0.0527 (9) | 0.0494 (9) | 0.0416 (8) | 0.0177 (7) | 0.0145 (7) | 0.0237 (7) |
N4 | 0.0475 (9) | 0.0719 (11) | 0.0721 (12) | 0.0258 (9) | 0.0184 (8) | 0.0448 (10) |
C1 | 0.0871 (16) | 0.0434 (11) | 0.0511 (12) | 0.0054 (11) | 0.0234 (11) | 0.0220 (9) |
C2 | 0.0704 (13) | 0.0585 (12) | 0.0525 (12) | 0.0330 (11) | 0.0247 (10) | 0.0308 (10) |
C3 | 0.0554 (11) | 0.0473 (10) | 0.0399 (10) | 0.0189 (9) | 0.0130 (8) | 0.0286 (9) |
C4 | 0.0545 (12) | 0.0629 (13) | 0.0492 (11) | 0.0137 (10) | 0.0084 (9) | 0.0304 (10) |
C5 | 0.0446 (10) | 0.0428 (10) | 0.0530 (11) | 0.0106 (8) | 0.0149 (8) | 0.0220 (9) |
C6 | 0.0377 (9) | 0.0489 (11) | 0.0530 (11) | 0.0082 (8) | 0.0188 (8) | 0.0183 (9) |
C7 | 0.0372 (9) | 0.0537 (11) | 0.0514 (11) | 0.0165 (8) | 0.0120 (8) | 0.0184 (9) |
C8 | 0.0418 (10) | 0.0432 (10) | 0.0456 (10) | 0.0131 (8) | 0.0103 (8) | 0.0176 (8) |
C9 | 0.0405 (10) | 0.0531 (11) | 0.0665 (12) | 0.0141 (9) | 0.0212 (9) | 0.0327 (10) |
C10 | 0.0384 (10) | 0.0518 (11) | 0.0698 (13) | 0.0164 (9) | 0.0161 (9) | 0.0323 (10) |
C11 | 0.0592 (13) | 0.0822 (16) | 0.0825 (16) | 0.0229 (12) | 0.0168 (11) | 0.0559 (14) |
C12 | 0.0548 (11) | 0.0390 (9) | 0.0346 (9) | 0.0085 (8) | 0.0133 (8) | 0.0128 (8) |
C13 | 0.0577 (12) | 0.0583 (12) | 0.0538 (11) | 0.0252 (10) | 0.0264 (10) | 0.0287 (10) |
C14 | 0.0582 (12) | 0.0631 (12) | 0.0536 (11) | 0.0205 (10) | 0.0302 (10) | 0.0337 (10) |
C15 | 0.0514 (11) | 0.0448 (10) | 0.0419 (10) | 0.0099 (9) | 0.0126 (8) | 0.0194 (8) |
C16 | 0.0478 (11) | 0.0590 (12) | 0.0496 (11) | 0.0185 (9) | 0.0168 (9) | 0.0229 (9) |
C17 | 0.0540 (11) | 0.0575 (12) | 0.0446 (10) | 0.0124 (9) | 0.0223 (9) | 0.0232 (9) |
C18 | 0.0764 (15) | 0.0612 (13) | 0.0655 (14) | 0.0306 (12) | 0.0178 (12) | 0.0294 (11) |
C5—O1 | 1.372 (2) | C1—H1A | 0.9700 |
C5—C10 | 1.376 (2) | C1—H1B | 0.9700 |
C5—C6 | 1.380 (3) | C2—N1 | 1.445 (3) |
C6—F1 | 1.363 (2) | C2—N3 | 1.478 (2) |
C6—C7 | 1.364 (3) | C2—H2A | 0.9700 |
C7—C8 | 1.396 (3) | C2—H2B | 0.9700 |
C7—H7 | 0.9300 | C12—C17 | 1.377 (3) |
C8—C9 | 1.384 (2) | C12—C13 | 1.389 (2) |
C8—N4 | 1.390 (2) | C12—N1 | 1.436 (2) |
C9—C10 | 1.387 (2) | C13—C14 | 1.360 (3) |
C9—H9 | 0.9300 | C13—H13 | 0.9300 |
C10—H10 | 0.9300 | C14—F2 | 1.358 (2) |
C11—O1 | 1.419 (2) | C14—C15 | 1.380 (3) |
C11—H11A | 0.9600 | C15—O2 | 1.367 (2) |
C11—H11B | 0.9600 | C15—C16 | 1.376 (3) |
C11—H11C | 0.9600 | C16—C17 | 1.395 (3) |
C4—N4 | 1.422 (2) | C16—H16 | 0.9300 |
C4—N3 | 1.490 (2) | C17—H17 | 0.9300 |
C4—H4A | 0.9700 | C18—O2 | 1.416 (2) |
C4—H4B | 0.9700 | C18—H18A | 0.9600 |
C3—N2 | 1.339 (2) | C18—H18B | 0.9600 |
C3—N3 | 1.342 (2) | C18—H18C | 0.9600 |
C3—S1 | 1.7063 (19) | N4—H4 | 0.8600 |
C1—N1 | 1.442 (2) | N2—H2 | 0.8600 |
C1—N2 | 1.467 (2) | ||
O1—C5—C10 | 126.63 (17) | N1—C2—H2B | 109.5 |
O1—C5—C6 | 116.69 (16) | N3—C2—H2B | 109.5 |
C10—C5—C6 | 116.67 (16) | H2A—C2—H2B | 108.1 |
F1—C6—C7 | 119.09 (16) | C17—C12—C13 | 118.53 (17) |
F1—C6—C5 | 117.33 (16) | C17—C12—N1 | 124.77 (16) |
C7—C6—C5 | 123.59 (16) | C13—C12—N1 | 116.67 (17) |
C6—C7—C8 | 119.47 (17) | C14—C13—C12 | 119.29 (18) |
C6—C7—H7 | 120.3 | C14—C13—H13 | 120.4 |
C8—C7—H7 | 120.3 | C12—C13—H13 | 120.4 |
C9—C8—N4 | 122.55 (16) | F2—C14—C13 | 118.84 (17) |
C9—C8—C7 | 117.96 (16) | F2—C14—C15 | 117.45 (16) |
N4—C8—C7 | 119.47 (16) | C13—C14—C15 | 123.68 (17) |
C8—C9—C10 | 121.03 (17) | O2—C15—C16 | 127.08 (18) |
C8—C9—H9 | 119.5 | O2—C15—C14 | 116.07 (16) |
C10—C9—H9 | 119.5 | C16—C15—C14 | 116.85 (17) |
C5—C10—C9 | 121.27 (17) | C15—C16—C17 | 120.75 (18) |
C5—C10—H10 | 119.4 | C15—C16—H16 | 119.6 |
C9—C10—H10 | 119.4 | C17—C16—H16 | 119.6 |
O1—C11—H11A | 109.5 | C12—C17—C16 | 120.89 (17) |
O1—C11—H11B | 109.5 | C12—C17—H17 | 119.6 |
H11A—C11—H11B | 109.5 | C16—C17—H17 | 119.6 |
O1—C11—H11C | 109.5 | O2—C18—H18A | 109.5 |
H11A—C11—H11C | 109.5 | O2—C18—H18B | 109.5 |
H11B—C11—H11C | 109.5 | H18A—C18—H18B | 109.5 |
N4—C4—N3 | 112.62 (16) | O2—C18—H18C | 109.5 |
N4—C4—H4A | 109.1 | H18A—C18—H18C | 109.5 |
N3—C4—H4A | 109.1 | H18B—C18—H18C | 109.5 |
N4—C4—H4B | 109.1 | C8—N4—C4 | 122.49 (16) |
N3—C4—H4B | 109.1 | C8—N4—H4 | 118.8 |
H4A—C4—H4B | 107.8 | C4—N4—H4 | 118.8 |
N2—C3—N3 | 117.87 (17) | C3—N3—C2 | 119.30 (16) |
N2—C3—S1 | 119.38 (15) | C3—N3—C4 | 120.73 (16) |
N3—C3—S1 | 122.75 (15) | C2—N3—C4 | 119.12 (16) |
N1—C1—N2 | 110.71 (16) | C12—N1—C1 | 117.62 (17) |
N1—C1—H1A | 109.5 | C12—N1—C2 | 114.78 (15) |
N2—C1—H1A | 109.5 | C1—N1—C2 | 109.06 (15) |
N1—C1—H1B | 109.5 | C3—N2—C1 | 124.40 (17) |
N2—C1—H1B | 109.5 | C3—N2—H2 | 117.8 |
H1A—C1—H1B | 108.1 | C1—N2—H2 | 117.8 |
N1—C2—N3 | 110.60 (16) | C5—O1—C11 | 117.01 (15) |
N1—C2—H2A | 109.5 | C15—O2—C18 | 117.81 (16) |
N3—C2—H2A | 109.5 | ||
O1—C5—C6—F1 | −0.9 (3) | C9—C8—N4—C4 | 16.4 (3) |
C10—C5—C6—F1 | 179.19 (17) | C7—C8—N4—C4 | −165.55 (18) |
O1—C5—C6—C7 | 179.25 (17) | N3—C4—N4—C8 | −82.2 (2) |
C10—C5—C6—C7 | −0.7 (3) | N2—C3—N3—C2 | 6.5 (2) |
F1—C6—C7—C8 | −179.94 (16) | S1—C3—N3—C2 | −174.36 (12) |
C5—C6—C7—C8 | −0.1 (3) | N2—C3—N3—C4 | 175.87 (15) |
C6—C7—C8—C9 | 0.9 (3) | S1—C3—N3—C4 | −5.0 (2) |
C6—C7—C8—N4 | −177.31 (17) | N1—C2—N3—C3 | −38.6 (2) |
N4—C8—C9—C10 | 177.22 (18) | N1—C2—N3—C4 | 151.90 (15) |
C7—C8—C9—C10 | −0.9 (3) | N4—C4—N3—C3 | 159.98 (16) |
O1—C5—C10—C9 | −179.27 (19) | N4—C4—N3—C2 | −30.6 (2) |
C6—C5—C10—C9 | 0.7 (3) | C17—C12—N1—C1 | −17.3 (3) |
C8—C9—C10—C5 | 0.1 (3) | C13—C12—N1—C1 | 160.84 (17) |
C17—C12—C13—C14 | 0.1 (3) | C17—C12—N1—C2 | 113.1 (2) |
N1—C12—C13—C14 | −178.13 (18) | C13—C12—N1—C2 | −68.8 (2) |
C12—C13—C14—F2 | 178.74 (18) | N2—C1—N1—C12 | 82.6 (2) |
C12—C13—C14—C15 | 0.8 (3) | N2—C1—N1—C2 | −50.3 (2) |
F2—C14—C15—O2 | 1.1 (3) | N3—C2—N1—C12 | −74.42 (19) |
C13—C14—C15—O2 | 178.99 (19) | N3—C2—N1—C1 | 59.98 (19) |
F2—C14—C15—C16 | −178.79 (18) | N3—C3—N2—C1 | 3.0 (3) |
C13—C14—C15—C16 | −0.9 (3) | S1—C3—N2—C1 | −176.13 (15) |
O2—C15—C16—C17 | −179.90 (18) | N1—C1—N2—C3 | 19.9 (3) |
C14—C15—C16—C17 | −0.1 (3) | C10—C5—O1—C11 | 5.4 (3) |
C13—C12—C17—C16 | −1.0 (3) | C6—C5—O1—C11 | −174.51 (19) |
N1—C12—C17—C16 | 177.09 (17) | C16—C15—O2—C18 | 3.6 (3) |
C15—C16—C17—C12 | 1.0 (3) | C14—C15—O2—C18 | −176.26 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···S1i | 0.86 | 2.68 | 3.469 (2) | 152 |
N4—H4···S1ii | 0.86 | 2.69 | 3.456 (2) | 148 |
C10—H10···F1iii | 0.93 | 2.53 | 3.434 (3) | 165 |
C11—H11B···F2iv | 0.96 | 2.59 | 3.535 (3) | 169 |
C18—H18C···F2iii | 0.96 | 2.51 | 3.292 (3) | 139 |
Symmetry codes: (i) −x+1, −y+1, −z; (ii) x−1, y, z; (iii) x+1, y, z; (iv) −x, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C18H20F2N4O2S |
Mr | 394.44 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 296 |
a, b, c (Å) | 6.6019 (8), 11.1195 (13), 13.9076 (17) |
α, β, γ (°) | 106.693 (1), 102.362 (1), 103.715 (1) |
V (Å3) | 905.31 (19) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.22 |
Crystal size (mm) | 0.31 × 0.28 × 0.23 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2003) |
Tmin, Tmax | 0.935, 0.951 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6772, 3341, 2683 |
Rint | 0.015 |
(sin θ/λ)max (Å−1) | 0.606 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.038, 0.098, 1.04 |
No. of reflections | 3341 |
No. of parameters | 246 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.30, −0.24 |
Computer programs: SMART (Bruker, 1997), SAINT (Bruker, 1997), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
C4—N4 | 1.422 (2) | C1—N2 | 1.467 (2) |
C4—N3 | 1.490 (2) | C2—N1 | 1.445 (3) |
C3—N2 | 1.339 (2) | C2—N3 | 1.478 (2) |
C1—N1 | 1.442 (2) | ||
N4—C4—N3 | 112.62 (16) | N1—C2—N3 | 110.60 (16) |
N1—C1—N2 | 110.71 (16) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···S1i | 0.86 | 2.68 | 3.469 (2) | 152.3 |
N4—H4···S1ii | 0.86 | 2.69 | 3.456 (2) | 148.4 |
C10—H10···F1iii | 0.93 | 2.53 | 3.434 (3) | 165.0 |
C11—H11B···F2iv | 0.96 | 2.59 | 3.535 (3) | 168.6 |
C18—H18C···F2iii | 0.96 | 2.51 | 3.292 (3) | 139.0 |
Symmetry codes: (i) −x+1, −y+1, −z; (ii) x−1, y, z; (iii) x+1, y, z; (iv) −x, −y, −z+1. |
The anomeric effect is well recognized as one of the most important factors in the conformational analysis of systems containing geminal heteroatoms. It generally manifests itself as the propensity of an electronegative substituent at atom C1 of a pyranose ring to occupy an axial orientation (Scheme 1; Edward, 1955), despite unfavourable steric interaction with H atoms at C3 and C5. Similar conformational preferences have also been found in many heterocycles. This axial conformational preference is now termed the generalized anomeric effect. The effect is not restricted to heterocyclic systems, and evidence for its existence in acyclic compounds has also been found (Narasimhamurthy et al., 1990; Christen et al., 1996; Gobbato et al., 1997). Thus, the term `anomeric effect' has been generalized to refer to the conformational preference of an lp—X—Z—Y moiety for an antiperiplanar orientation of the lone pair (lp) to the Z—Y bond, where X represents an atom possessing lone pairs, Z is usually a C atom and Y denotes an atom more electronegative than Z.
Several theoretical models have been proposed to account for the origin of this effect. Although dipolar electrostatic interactions were first considered as its origin (Edward, 1955; Perrin et al., 1994; Pinto et al., 1988), they failed to explain the structural changes observed in the axial conformation, such as the decrease in the X—Z bond length, the increase in the Z—Y bond distance and the opening of the X—Z—Y angle. To explain these conformational preferences and changes in bond parameters, a stereoelectronic model (SM) has been proposed (Wiberg & Rablen, 1993). The SM considers that the stabilization of the antiperiplanar conformation results from the delocalization of one of the lps on X to the Z—Y σ* antibonding orbital, which takes place when the lp—X—Y—Z fragment adopts an antiperiplanar orientation. This stereoelectronic interaction is denoted as n(X) → σ*(Y—Z) and its validity has been well examined by X-ray analysis (Uehara et al., 1999; Ellenik & Magnusson, 1994; Juaristi & Cuevas, 1993; Kakanejadifard & Farnia, 1997; Zhang et al., 2009). If we concentrate on the N—C—N fragment, many experimental results have indicated that lp—N—C—N is in an antiperiplanar conformation, and the n(N)→σ*(C—N) interaction is the dominant factor in determining the conformational preference.
On the other hand, some N—C—N-containing compounds have been studied using both the quantum theory of atoms in molecules and X-ray analysis (Eskandari et al., 2007; Dong et al., 1999; Fun & Kia, 2008). The results show that the lp—N—C—N units in 1,3-diazacyclohexanes and 1,3,5-triazinane prefer the gauche orientation (Scheme 2). Thus, the conformational preferences of these N—C—N units are not in line with the SM of the anomeric effect. In contrast, these variations can be explained on the basis of the steric interactions.
However, despite these two different conformations and two interpretations for lp—N—C—N fragments, no studies of the anomeric effect, to our knowledge, have involved the 5-aryl-1-[(arylamino)methyl]-1,3,5-triazinane-2-thiones to date. Unlike the previously studied N—C—N units, the N(thioureido)—C—N(arylamine) fragments in 5-aryl-1-[(arylamino)methyl]-1,3,5-triazinane-2-thiones have two environmentally diverse N atoms. The concrete role they play in the conformational effect is our chief concern. Therefore, we report here the results of our studies of the anomeric effects and supramolecular structure of one such compound, the title compound, (I) (Fig. 1).
In (I), the triazinane-2-thione ring adopts an envelope conformation. Atom N1 is the flap atom, displaced by 0.636 (3) Å from the plane of the other five atoms. The N3 anilinomethyl and N1 phenyl groups lie on the same side of the heterocycle. The conformation is similar to those in our previously reported compounds (Zhang et al., 2008). However, the N4 lp adopts an antiperiplanar orientation with respect to the N3—C4 bond, which is unexpected and completely different from what has been observed in other N-containing heterocycles (Eskandari et al., 2007; Dong et al., 1999; Fun & Kia, 2008). This shows that the orientation of the N4 lp is not caused incidentally by the crystal packing or by intramolecular π–π or C—H···π interactions, but suggests the existence of anomeric effects in the exo N3—C4—N4 fragment. This can be further confirmed by some correlative geometric parameters (Table 1).
In (I), the endo residues, N1—C1—N2 and N1—C2—N3, are similar in chemical environment to the exo N3—C4—N4 fragment, and their bond lengths are consistent with the usual value for N—Csp3 bonds (1.44–1.47 Å; Glidewell et al., 2003; Nesterov et al., 2003; Akkurt et al., 2007; Ma et al. 1996). Therefore, the endo fragments N1—C1—N2 and N1—C2—N3 in (I) were selected as the model fragments. As shown in Table 1, the N4—C4 bond is much shorter than the corresponding N1—C1 and N1—C2 bonds, while the C4—N3 bond is much longer than the C1—N2 and C2—N3 bonds. The observed conformation, the remarkable lengthening of the N3—C4 bond and the significant shortening of the N4—C4 bond all point to the conclusion that there is a strong anomeric effect in the exo N3—C4—N4 unit. The existence of the anomeric effect was also further verified via the opening of the N4—C4—N3 angle relative to the angles N1—C1—N2 and N1—C2—N3 (Table 1). This interaction is best rationalized in terms of the `negative hyperconjugation' of the N4 p electron pair with the adjacent antibonding orbital of C4—N3, and it is the interaction that requires the N3—C4 bond to adopt an antiperiplanar orientation with respect to the N4 lp.
The molecules of (I) are linked into a complex three-dimensional framework by six weak intermolecular interactions, two N—H···S hydrogen bonds, three C—H···F hydrogen bonds (Table 2) and one π–π stacking interaction. However, the structure can be easily analyzed from an edge-fused dimer. Thioureido atom N2 in the molecule at (x, y, z) acts as a hydrogen-bond donor to thiocarbonyl atom S1 in the molecule at (1 - x, 1 - y, -z), so generating by inversion a dimer centred at (1/2, 1/2, 0) and characterized by the usual R22(8) (Bernstein et al., 1995) graph-set motif (Fig. 2). Such dimers, as the backbone building units, are further linked into a two-dimensional network by N—H···S and C—H···F hydrogen bonds (Table 2). Imino atom N4 in the molecule at (x, y, z), part of the dimer centred at (1/2, 1/2, 0), acts as a hydrogen-bond donor to the atom S1 in the molecule at (x - 1, y, z), part of the dimer centred at (-1/2, 1/2, 0). Meanwhile, phenyl atom C10 and methyl atom C18 in the molecule at (1 - x, 1 - y, -z) act as hydrogen-bond donors to, respectively, atoms F1 and F2 in the molecule at (-x, 1 - y, -z), so generating by inversion and translation a multiple hydrogen-bonded chain parallel to [100] (Fig. 2). Chains of this type are laterally linked into a sheet by another C—H···F interaction (Table 2). Methyl atom C11 in the molecule at (x, y, z) acts as a hydrogen-bond donor, via atom H11B, to atom F2 in the molecule at (-x, -y, 1 - z), thus forming by inversion and translation a hydrogen-bonded sheet parallel to (011) (Fig. 2). Two such sheets, related to one another by a 21 screw axis along (x, 1/2, 1/2), pass through each unit cell, and adjacent sheets are linked through a π–π stacking interaction to build up a three-dimensional framework. The C12–C17 rings in the molecules at (x, y, z) and (1 - x, 1 - y, 1 - z) are strictly parallel, with an interplanar spacing of 3.556 (1) Å; the ring-centroid separation is 3.644 (1) Å, corresponding to a ring-centroid offset of 0.797 (1) Å (Fig. 3). Propagation of the motif by the space group links each (011) sheet to the two neighbouring sheets, so linking all of the sheets into a complex three-dimensional framework.
In conclusion, analysis of the X-ray crystallographic structural parameters in (I) has revealed that there is only a stereoelectronic interaction in the exo N(thioureido)—C—N(arylamine) fragment, where the arylamine atom N4 acts as an lp donor to the thioureido N3—C4 σ* antibonding orbital, and that the supramolecular structure exhibits a complex three-dimensional packing arrangement via a combination of two N—H···S hydrogen bonds, three C—H···F hydrogen bonds and a π–π stacking interaction.