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The first in situ preparation and single-crystal structure identification of pure 1-(pyridin-4-yl)-4-thio­pyridine (PTP), C10H8N2S, a simple and basic derivative of mercapto­pyridine, from a crystallization mixture is described. The same PTP was found in two multicomponent crystal forms with 3,5-di­nitro­benzoic acid as a classic two-component cocrystal, namely, 1-(pyridin-4-yl)-4-thio­pyridine–3,5-di­nitro­benzoic acid (1/1), C7H4N2O6·C10H8N2S, and with 2-hy­droxy-3,5-di­nitro­benzoic acid as a salt formed via proton transfer from the hy­droxy group of the acid to the pyridyl N atom of PTP, namely, 4-(4-sul­fan­yl­­idene-1,4-di­hydro­pyridin-1-yl)pyridin-1-ium 1-carb­oxy-3,5-di­nitro­phe­nol­ate, C10H9N2S+·C7H3N2O7. The protonation energy of PTP is 944.64 kJ mol−1, indicating slightly greater N-basicity compared to pyridine, a well characterized and very basic chemical reference. A variety of mol­ecular inter­actions can be observed in the three new crystal structures of PTP, which are all discussed in detail. Our findings confirm those of previous studies, indicating that PTP and 4-mercapto­pyridine may, under suitable conditions, be chemically converted to one another, and that this process can be stimulated by light (UV–Vis).

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S2053229623009403/dg3047sup1.cif
Contains datablocks II, III, global, I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229623009403/dg3047IIsup3.hkl
Contains datablock II

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229623009403/dg3047IIIsup4.hkl
Contains datablock III

cml

Chemical Markup Language (CML) file https://doi.org/10.1107/S2053229623009403/dg3047IIsup4.cml
Supplementary material

cml

Chemical Markup Language (CML) file https://doi.org/10.1107/S2053229623009403/dg3047IIIsup5.cml
Supplementary material

cml

Chemical Markup Language (CML) file https://doi.org/10.1107/S2053229623009403/dg3047Isup6.cml
Supplementary material

CCDC references: 2266938; 2266937; 2266936

Computing details top

1-(Pyridin-4-yl)pyridine-4-thiol–3,5-dinitrobenzoic acid (1/1) (II) top
Crystal data top
C7H4N2O6·C10H8N2SF(000) = 824
Mr = 400.37Dx = 1.526 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54184 Å
a = 12.02543 (19) ÅCell parameters from 9752 reflections
b = 10.32242 (14) Åθ = 3.7–76.3°
c = 14.3244 (2) ŵ = 2.07 mm1
β = 101.4078 (15)°T = 293 K
V = 1742.98 (5) Å3Irregular, dark yellow
Z = 40.18 × 0.10 × 0.05 mm
Data collection top
Rigaku XtaLAB Synergy Dualflex
diffractometer with a HyPix detector
2929 reflections with I > 2σ(I)
Radiation source: micro-focus sealed X-ray tubeRint = 0.023
Detector resolution: 10.0000 pixels mm-1θmax = 76.5°, θmin = 3.8°
Absorption correction: multi-scan
(CrysAlis PRO; Rigaku OD, 2022)
h = 1513
Tmin = 0.880, Tmax = 1.000k = 1012
16749 measured reflectionsl = 1617
3424 independent reflections
Refinement top
Refinement on F26 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H-atom parameters constrained
wR(F2) = 0.129 w = 1/[σ2(Fo2) + (0.0693P)2 + 0.3737P]
where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
3424 reflectionsΔρmax = 0.57 e Å3
256 parametersΔρmin = 0.30 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
S40.18075 (5)0.76068 (6)1.16443 (4)0.0797 (2)
O270.38704 (12)0.78919 (14)0.62963 (10)0.0670 (4)
H270.3384380.7787420.6618120.101*
O280.30770 (12)0.61331 (14)0.55500 (10)0.0712 (4)
O240.59808 (13)0.55380 (16)0.23806 (10)0.0790 (4)
O230.45104 (15)0.46540 (15)0.27590 (11)0.0805 (4)
O260.76296 (12)0.93265 (15)0.40816 (12)0.0791 (4)
N230.52596 (14)0.54626 (16)0.28707 (10)0.0595 (4)
N10.02194 (12)0.76464 (14)0.93288 (11)0.0541 (4)
N250.69363 (13)0.93001 (15)0.46007 (13)0.0618 (4)
N100.23877 (14)0.77864 (18)0.73753 (12)0.0662 (4)
O250.69107 (15)1.00916 (15)0.52212 (13)0.0872 (5)
C210.45872 (14)0.71492 (15)0.49861 (11)0.0460 (4)
C230.52987 (14)0.64090 (16)0.36428 (11)0.0480 (4)
C220.45469 (14)0.62649 (15)0.42532 (11)0.0467 (4)
H220.4025740.5588520.4172790.056*
C250.60987 (14)0.82446 (16)0.44697 (12)0.0498 (4)
C240.60810 (14)0.73922 (16)0.37280 (12)0.0501 (4)
H240.6573590.7477940.3306390.060*
C260.53761 (14)0.81491 (15)0.51043 (12)0.0493 (4)
H260.5416170.8740340.5599780.059*
C270.37628 (15)0.70071 (17)0.56421 (12)0.0509 (4)
C70.09216 (15)0.76924 (17)0.86333 (13)0.0536 (4)
C20.06605 (15)0.84970 (17)0.92952 (13)0.0550 (4)
H20.0834190.9076990.8790580.066*
C80.12599 (16)0.88665 (18)0.83224 (13)0.0582 (4)
H80.0997360.9641070.8530420.070*
C30.12840 (15)0.85051 (18)0.99904 (13)0.0568 (4)
H30.1877020.9093840.9949660.068*
C40.10562 (16)0.76403 (18)1.07774 (14)0.0565 (4)
C50.01376 (16)0.6783 (2)1.07658 (14)0.0626 (5)
H50.0052780.6183581.1256050.075*
C90.19935 (17)0.8866 (2)0.76983 (13)0.0637 (5)
H90.2224870.9657310.7492310.076*
C60.04677 (16)0.68060 (19)1.00712 (14)0.0612 (5)
H60.1070520.6233381.0099310.073*
C120.13072 (18)0.65630 (19)0.82888 (16)0.0667 (5)
H120.1079410.5757920.8474160.080*
C110.20394 (18)0.6661 (2)0.76622 (16)0.0718 (6)
H110.2301450.5902820.7429680.086*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
S40.0822 (4)0.0968 (4)0.0703 (4)0.0152 (3)0.0400 (3)0.0050 (3)
O270.0743 (9)0.0749 (8)0.0609 (8)0.0122 (7)0.0356 (7)0.0173 (6)
O280.0777 (9)0.0757 (9)0.0686 (8)0.0241 (7)0.0352 (7)0.0113 (7)
O240.0910 (10)0.0955 (11)0.0600 (8)0.0210 (8)0.0380 (8)0.0035 (7)
O230.0944 (11)0.0780 (9)0.0721 (9)0.0090 (8)0.0241 (8)0.0282 (7)
O260.0674 (8)0.0825 (10)0.0921 (11)0.0126 (7)0.0274 (8)0.0218 (8)
N230.0694 (9)0.0647 (9)0.0458 (8)0.0146 (8)0.0150 (7)0.0031 (6)
N10.0531 (8)0.0576 (8)0.0548 (8)0.0041 (6)0.0188 (6)0.0037 (6)
N250.0607 (9)0.0546 (9)0.0691 (10)0.0061 (7)0.0107 (7)0.0141 (8)
N100.0596 (9)0.0894 (12)0.0537 (9)0.0016 (8)0.0211 (7)0.0100 (8)
O250.1003 (12)0.0694 (9)0.0923 (11)0.0240 (8)0.0200 (9)0.0032 (8)
C210.0520 (8)0.0473 (8)0.0407 (8)0.0017 (6)0.0136 (7)0.0036 (6)
C230.0536 (9)0.0521 (8)0.0394 (8)0.0105 (7)0.0118 (6)0.0031 (6)
C220.0497 (8)0.0482 (8)0.0430 (8)0.0011 (6)0.0111 (6)0.0028 (6)
C250.0509 (9)0.0482 (8)0.0508 (9)0.0002 (7)0.0116 (7)0.0120 (7)
C240.0497 (9)0.0572 (9)0.0462 (9)0.0080 (7)0.0163 (7)0.0123 (7)
C260.0582 (9)0.0470 (8)0.0437 (8)0.0005 (7)0.0125 (7)0.0020 (6)
C270.0565 (9)0.0545 (9)0.0448 (8)0.0012 (7)0.0172 (7)0.0003 (7)
C70.0512 (9)0.0628 (10)0.0494 (9)0.0013 (7)0.0162 (7)0.0020 (7)
C20.0559 (9)0.0558 (9)0.0553 (10)0.0048 (7)0.0155 (8)0.0011 (7)
C80.0646 (10)0.0613 (10)0.0527 (10)0.0021 (8)0.0210 (8)0.0059 (8)
C30.0543 (9)0.0571 (9)0.0615 (10)0.0010 (7)0.0172 (8)0.0057 (8)
C40.0564 (10)0.0615 (10)0.0540 (10)0.0133 (8)0.0166 (8)0.0072 (8)
C50.0593 (10)0.0690 (11)0.0605 (11)0.0018 (9)0.0143 (8)0.0132 (9)
C90.0674 (11)0.0753 (12)0.0523 (10)0.0087 (9)0.0216 (8)0.0020 (9)
C60.0576 (10)0.0636 (11)0.0645 (11)0.0070 (8)0.0171 (8)0.0113 (9)
C120.0695 (12)0.0591 (10)0.0762 (13)0.0038 (9)0.0260 (10)0.0026 (9)
C110.0700 (12)0.0772 (13)0.0735 (13)0.0114 (10)0.0270 (10)0.0127 (10)
Geometric parameters (Å, º) top
S4—C41.6742 (19)C25—C241.376 (2)
O27—C271.297 (2)C25—C261.380 (2)
O27—H270.8200C24—H240.9300
O28—C271.212 (2)C26—H260.9300
O24—N231.221 (2)C7—C81.380 (3)
O23—N231.215 (2)C7—C121.381 (3)
O26—N251.222 (2)C2—C31.360 (2)
N23—C231.469 (2)C2—H20.9300
N1—C61.359 (2)C8—C91.375 (2)
N1—C21.368 (2)C8—H80.9300
N1—C71.429 (2)C3—C41.422 (3)
N25—O251.212 (2)C3—H30.9300
N25—C251.470 (2)C4—C51.418 (3)
N10—C111.327 (3)C5—C61.344 (3)
N10—C91.329 (3)C5—H50.9300
C21—C221.385 (2)C9—H90.9300
C21—C261.389 (2)C6—H60.9300
C21—C271.502 (2)C12—C111.380 (3)
C23—C241.373 (2)C12—H120.9300
C23—C221.385 (2)C11—H110.9300
C22—H220.9300
C27—O27—H27109.5O27—C27—C21113.55 (14)
O23—N23—O24124.07 (16)C8—C7—C12119.00 (17)
O23—N23—C23117.92 (15)C8—C7—N1120.46 (15)
O24—N23—C23118.01 (16)C12—C7—N1120.50 (16)
C6—N1—C2119.06 (15)C3—C2—N1120.85 (17)
C6—N1—C7119.88 (15)C3—C2—H2119.6
C2—N1—C7120.92 (14)N1—C2—H2119.6
O25—N25—O26123.39 (16)C9—C8—C7118.51 (17)
O25—N25—C25118.48 (16)C9—C8—H8120.7
O26—N25—C25118.13 (17)C7—C8—H8120.7
C11—N10—C9118.00 (16)C2—C3—C4121.96 (17)
C22—C21—C26120.19 (15)C2—C3—H3119.0
C22—C21—C27118.78 (14)C4—C3—H3119.0
C26—C21—C27121.03 (14)C5—C4—C3114.26 (16)
C24—C23—C22123.02 (15)C5—C4—S4122.12 (15)
C24—C23—N23118.54 (15)C3—C4—S4123.62 (15)
C22—C23—N23118.44 (15)C6—C5—C4122.34 (18)
C23—C22—C21118.60 (15)C6—C5—H5118.8
C23—C22—H22120.7C4—C5—H5118.8
C21—C22—H22120.7N10—C9—C8123.09 (18)
C24—C25—C26123.19 (15)N10—C9—H9118.5
C24—C25—N25118.53 (15)C8—C9—H9118.5
C26—C25—N25118.27 (16)C5—C6—N1121.54 (17)
C23—C24—C25116.54 (15)C5—C6—H6119.2
C23—C24—H24121.7N1—C6—H6119.2
C25—C24—H24121.7C11—C12—C7118.21 (19)
C25—C26—C21118.46 (15)C11—C12—H12120.9
C25—C26—H26120.8C7—C12—H12120.9
C21—C26—H26120.8N10—C11—C12123.16 (18)
O28—C27—O27124.86 (16)N10—C11—H11118.4
O28—C27—C21121.59 (15)C12—C11—H11118.4
O23—N23—C23—C24174.69 (16)C26—C21—C27—O270.3 (2)
O24—N23—C23—C245.2 (2)C6—N1—C7—C8134.88 (19)
O23—N23—C23—C225.5 (2)C2—N1—C7—C840.8 (2)
O24—N23—C23—C22174.54 (15)C6—N1—C7—C1242.7 (3)
C24—C23—C22—C210.3 (2)C2—N1—C7—C12141.69 (19)
N23—C23—C22—C21179.51 (14)C6—N1—C2—C30.2 (3)
C26—C21—C22—C230.6 (2)C7—N1—C2—C3175.88 (16)
C27—C21—C22—C23179.19 (14)C12—C7—C8—C91.7 (3)
O25—N25—C25—C24176.01 (17)N1—C7—C8—C9175.92 (17)
O26—N25—C25—C244.6 (2)N1—C2—C3—C40.0 (3)
O25—N25—C25—C264.7 (2)C2—C3—C4—C50.2 (3)
O26—N25—C25—C26174.70 (15)C2—C3—C4—S4179.47 (15)
C22—C23—C24—C250.7 (2)C3—C4—C5—C60.7 (3)
N23—C23—C24—C25179.06 (14)S4—C4—C5—C6179.98 (16)
C26—C25—C24—C230.4 (2)C11—N10—C9—C81.0 (3)
N25—C25—C24—C23178.89 (14)C7—C8—C9—N100.4 (3)
C24—C25—C26—C210.4 (2)C4—C5—C6—N11.0 (3)
N25—C25—C26—C21179.67 (15)C2—N1—C6—C50.7 (3)
C22—C21—C26—C250.9 (2)C7—N1—C6—C5176.43 (18)
C27—C21—C26—C25178.87 (14)C8—C7—C12—C111.5 (3)
C22—C21—C27—O280.8 (3)N1—C7—C12—C11176.07 (18)
C26—C21—C27—O28179.43 (17)C9—N10—C11—C121.1 (3)
C22—C21—C27—O27179.48 (16)C7—C12—C11—N100.1 (3)
4-(4-Sulfanylidene-1,4-dihydropyridin-1-yl)pyridin-1-ium; 1-carboxy-3,5-dinitrophenolate (III) top
Crystal data top
C10H9N2S+·C7H3N2O7Dx = 1.617 Mg m3
Mr = 416.37Cu Kα radiation, λ = 1.54184 Å
Orthorhombic, P212121Cell parameters from 9477 reflections
a = 6.7894 (1) Åθ = 3.9–74.9°
b = 15.5750 (2) ŵ = 2.18 mm1
c = 16.1749 (2) ÅT = 293 K
V = 1710.41 (4) Å3Needle, dark yellow
Z = 40.21 × 0.03 × 0.02 mm
F(000) = 856
Data collection top
Rigaku XtaLAB Synergy Dualflex
diffractometer with a HyPix detector
3077 reflections with I > 2σ(I)
Radiation source: micro-focus sealed X-ray tubeRint = 0.029
Detector resolution: 10.0000 pixels mm-1θmax = 76.6°, θmin = 3.9°
Absorption correction: multi-scan
(CrysAlis PRO; Rigaku OD, 2022)
h = 78
Tmin = 0.773, Tmax = 1.000k = 1819
14886 measured reflectionsl = 2019
3266 independent reflections
Refinement top
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.027 w = 1/[σ2(Fo2) + (0.0398P)2 + 0.189P]
where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.071(Δ/σ)max < 0.001
S = 1.05Δρmax = 0.15 e Å3
3266 reflectionsΔρmin = 0.24 e Å3
273 parametersAbsolute structure: Flack (1983), refined as an inversion twin
6 restraintsAbsolute structure parameter: 0.47 (2)
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. Refined as a 2-component inversion twin.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
S40.90227 (14)0.56171 (5)0.29915 (4)0.0634 (2)
O220.5753 (3)0.83692 (10)0.92264 (9)0.0450 (4)
O280.5615 (3)1.08631 (10)0.99818 (11)0.0516 (5)
O270.5107 (3)0.99336 (12)0.89758 (10)0.0518 (5)
O250.6306 (3)0.98242 (11)1.27889 (10)0.0542 (5)
O240.6755 (3)0.67684 (11)0.96630 (11)0.0556 (5)
O260.7340 (3)0.85430 (12)1.30316 (11)0.0563 (5)
O230.5822 (4)0.64584 (11)1.08964 (12)0.0640 (6)
N250.6795 (3)0.91095 (12)1.25595 (11)0.0401 (5)
N10.8591 (3)0.66399 (11)0.55851 (10)0.0349 (4)
N230.6337 (3)0.69753 (12)1.03721 (12)0.0421 (5)
N100.7232 (3)0.75250 (12)0.79342 (12)0.0422 (5)
C260.6281 (3)0.95626 (13)1.11297 (13)0.0361 (5)
H260.6212251.0125941.1318070.043*
C240.6726 (3)0.80617 (14)1.14307 (14)0.0369 (5)
H240.6967690.7624911.1809360.044*
C210.6029 (3)0.93891 (14)1.03023 (13)0.0351 (4)
C250.6636 (3)0.89027 (15)1.16829 (13)0.0364 (5)
C220.6091 (3)0.85245 (14)0.99906 (13)0.0342 (4)
C230.6449 (3)0.78772 (13)1.06021 (14)0.0353 (5)
C80.7303 (4)0.64001 (14)0.69675 (14)0.0402 (5)
H80.7025000.5833430.6828850.048*
C270.5590 (3)1.01281 (15)0.97430 (14)0.0390 (5)
C30.9178 (4)0.54703 (14)0.46717 (13)0.0396 (5)
H30.9469850.4891410.4602010.048*
C70.8164 (3)0.69426 (13)0.63954 (13)0.0347 (5)
C60.8471 (4)0.71806 (14)0.49179 (14)0.0393 (5)
H60.8249070.7762830.5004900.047*
C50.8668 (4)0.68858 (14)0.41382 (14)0.0421 (5)
H50.8618880.7275250.3702780.050*
C20.8984 (4)0.57848 (13)0.54426 (13)0.0377 (5)
H20.9118220.5415180.5890630.045*
C120.8565 (4)0.77920 (15)0.66141 (14)0.0430 (6)
H120.9153890.8166040.6240320.052*
C90.6863 (4)0.67040 (16)0.77384 (13)0.0424 (5)
H90.6305040.6339610.8129120.051*
C40.8948 (4)0.59998 (15)0.39585 (13)0.0408 (5)
C110.8067 (4)0.80615 (14)0.73959 (15)0.0456 (6)
H110.8315190.8626030.7551440.055*
H270.527 (5)0.934 (2)0.8921 (19)0.069 (10)*
H100.685 (4)0.7748 (17)0.8420 (17)0.043 (7)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
S40.1034 (6)0.0541 (4)0.0328 (3)0.0124 (4)0.0070 (3)0.0095 (3)
O220.0645 (11)0.0392 (8)0.0313 (7)0.0105 (8)0.0005 (8)0.0049 (7)
O280.0738 (13)0.0299 (8)0.0510 (9)0.0007 (8)0.0052 (9)0.0024 (7)
O270.0813 (13)0.0394 (10)0.0348 (9)0.0126 (9)0.0043 (8)0.0040 (7)
O250.0798 (13)0.0436 (9)0.0392 (9)0.0008 (9)0.0025 (9)0.0069 (7)
O240.0839 (14)0.0393 (9)0.0436 (9)0.0102 (9)0.0031 (9)0.0102 (8)
O260.0794 (13)0.0522 (10)0.0374 (8)0.0004 (10)0.0110 (9)0.0095 (8)
O230.1020 (17)0.0323 (8)0.0577 (11)0.0079 (10)0.0131 (12)0.0038 (8)
N250.0489 (11)0.0386 (10)0.0329 (9)0.0072 (9)0.0014 (9)0.0018 (8)
N10.0455 (10)0.0303 (9)0.0288 (8)0.0013 (8)0.0013 (8)0.0012 (7)
N230.0490 (11)0.0317 (9)0.0456 (11)0.0025 (8)0.0010 (9)0.0024 (8)
N100.0512 (12)0.0440 (11)0.0314 (10)0.0082 (9)0.0002 (9)0.0097 (9)
C260.0442 (12)0.0286 (10)0.0357 (10)0.0016 (9)0.0005 (9)0.0015 (8)
C240.0400 (12)0.0336 (11)0.0372 (11)0.0000 (9)0.0009 (9)0.0045 (9)
C210.0401 (11)0.0315 (10)0.0337 (10)0.0010 (10)0.0013 (9)0.0013 (9)
C250.0425 (12)0.0367 (11)0.0301 (10)0.0037 (10)0.0002 (9)0.0006 (9)
C220.0365 (10)0.0335 (10)0.0326 (9)0.0010 (9)0.0036 (9)0.0038 (8)
C230.0376 (11)0.0296 (10)0.0386 (11)0.0040 (9)0.0024 (9)0.0031 (9)
C80.0512 (13)0.0348 (11)0.0347 (11)0.0039 (10)0.0015 (10)0.0046 (9)
C270.0444 (12)0.0366 (11)0.0360 (11)0.0013 (10)0.0017 (10)0.0030 (10)
C30.0514 (13)0.0300 (10)0.0375 (10)0.0026 (10)0.0049 (10)0.0029 (9)
C70.0411 (12)0.0321 (10)0.0309 (10)0.0040 (9)0.0004 (9)0.0057 (8)
C60.0500 (13)0.0285 (10)0.0393 (11)0.0012 (10)0.0020 (10)0.0020 (9)
C50.0555 (15)0.0368 (11)0.0339 (10)0.0008 (10)0.0031 (10)0.0063 (9)
C20.0492 (12)0.0295 (10)0.0343 (10)0.0046 (9)0.0035 (10)0.0012 (8)
C120.0570 (15)0.0332 (11)0.0387 (11)0.0004 (11)0.0010 (11)0.0029 (9)
C90.0502 (13)0.0441 (12)0.0329 (10)0.0033 (11)0.0023 (10)0.0029 (10)
C40.0480 (13)0.0417 (12)0.0327 (10)0.0062 (10)0.0049 (10)0.0016 (9)
C110.0637 (15)0.0322 (11)0.0409 (12)0.0052 (11)0.0037 (12)0.0085 (10)
Geometric parameters (Å, º) top
S4—C41.675 (2)C24—C231.384 (3)
O22—C221.280 (3)C24—H240.9300
O28—C271.208 (3)C21—C221.438 (3)
O27—C271.319 (3)C21—C271.494 (3)
O27—H270.93 (3)C22—C231.433 (3)
O25—N251.219 (3)C8—C91.367 (3)
O24—N231.225 (3)C8—C71.383 (3)
O26—N251.224 (2)C8—H80.9300
O23—N231.220 (3)C3—C21.346 (3)
N25—C251.458 (3)C3—C41.427 (3)
N1—C61.371 (3)C3—H30.9300
N1—C21.378 (3)C7—C121.396 (3)
N1—C71.423 (3)C6—C51.349 (3)
N23—C231.455 (3)C6—H60.9300
N10—C111.333 (3)C5—C41.423 (3)
N10—C91.341 (3)C5—H50.9300
N10—H100.90 (3)C2—H20.9300
C26—C211.376 (3)C12—C111.375 (3)
C26—C251.384 (3)C12—H120.9300
C26—H260.9300C9—H90.9300
C24—C251.373 (3)C11—H110.9300
C27—O27—H27107 (2)C9—C8—H8120.3
O25—N25—O26123.39 (19)C7—C8—H8120.3
O25—N25—C25118.52 (19)O28—C27—O27121.5 (2)
O26—N25—C25118.02 (19)O28—C27—C21122.3 (2)
C6—N1—C2118.26 (17)O27—C27—C21116.26 (19)
C6—N1—C7120.63 (17)C2—C3—C4121.9 (2)
C2—N1—C7120.92 (17)C2—C3—H3119.1
O23—N23—O24122.9 (2)C4—C3—H3119.1
O23—N23—C23118.31 (19)C8—C7—C12119.5 (2)
O24—N23—C23118.77 (19)C8—C7—N1120.02 (19)
C11—N10—C9121.5 (2)C12—C7—N1120.5 (2)
C11—N10—H10116.8 (17)C5—C6—N1121.4 (2)
C9—N10—H10121.5 (17)C5—C6—H6119.3
C21—C26—C25120.3 (2)N1—C6—H6119.3
C21—C26—H26119.8C6—C5—C4122.3 (2)
C25—C26—H26119.8C6—C5—H5118.9
C25—C24—C23118.7 (2)C4—C5—H5118.9
C25—C24—H24120.7C3—C2—N1121.7 (2)
C23—C24—H24120.7C3—C2—H2119.1
C26—C21—C22121.41 (19)N1—C2—H2119.1
C26—C21—C27117.55 (19)C11—C12—C7118.3 (2)
C22—C21—C27120.98 (19)C11—C12—H12120.8
C24—C25—C26121.6 (2)C7—C12—H12120.8
C24—C25—N25119.75 (19)N10—C9—C8120.3 (2)
C26—C25—N25118.5 (2)N10—C9—H9119.8
O22—C22—C23124.32 (19)C8—C9—H9119.8
O22—C22—C21120.67 (19)C5—C4—C3114.21 (19)
C23—C22—C21114.94 (19)C5—C4—S4122.69 (18)
C24—C23—C22123.06 (19)C3—C4—S4123.10 (18)
C24—C23—N23117.07 (19)N10—C11—C12120.9 (2)
C22—C23—N23119.60 (19)N10—C11—H11119.5
C9—C8—C7119.4 (2)C12—C11—H11119.5
C25—C26—C21—C221.1 (3)C22—C21—C27—O28176.7 (2)
C25—C26—C21—C27178.2 (2)C26—C21—C27—O27171.6 (2)
C23—C24—C25—C260.1 (3)C22—C21—C27—O275.5 (3)
C23—C24—C25—N25176.0 (2)C9—C8—C7—C120.2 (4)
C21—C26—C25—C240.8 (4)C9—C8—C7—N1178.7 (2)
C21—C26—C25—N25176.9 (2)C6—N1—C7—C8146.6 (2)
O25—N25—C25—C24164.8 (2)C2—N1—C7—C828.3 (3)
O26—N25—C25—C2412.3 (3)C6—N1—C7—C1231.9 (3)
O25—N25—C25—C2611.4 (3)C2—N1—C7—C12153.2 (2)
O26—N25—C25—C26171.5 (2)C2—N1—C6—C52.1 (3)
C26—C21—C22—O22176.4 (2)C7—N1—C6—C5173.0 (2)
C27—C21—C22—O220.6 (3)N1—C6—C5—C42.0 (4)
C26—C21—C22—C230.6 (3)C4—C3—C2—N11.3 (4)
C27—C21—C22—C23177.6 (2)C6—N1—C2—C32.4 (4)
C25—C24—C23—C220.6 (3)C7—N1—C2—C3172.6 (2)
C25—C24—C23—N23173.4 (2)C8—C7—C12—C110.6 (4)
O22—C22—C23—C24177.1 (2)N1—C7—C12—C11177.9 (2)
C21—C22—C23—C240.3 (3)C11—N10—C9—C81.3 (4)
O22—C22—C23—N233.2 (3)C7—C8—C9—N101.1 (4)
C21—C22—C23—N23173.6 (2)C6—C5—C4—C35.4 (4)
O23—N23—C23—C2424.6 (3)C6—C5—C4—S4175.2 (2)
O24—N23—C23—C24155.7 (2)C2—C3—C4—C55.0 (4)
O23—N23—C23—C22149.7 (2)C2—C3—C4—S4175.6 (2)
O24—N23—C23—C2230.1 (3)C9—N10—C11—C120.6 (4)
C26—C21—C27—O286.2 (3)C7—C12—C11—N100.4 (4)
1-(Pyridin-4-yl)pyridine-4-thiol (I) top
Crystal data top
C10H8N2SF(000) = 788.815
Mr = 188.26Cu Kα radiation, λ = 1.54184 Å
Orthorhombic, PbcaCell parameters from 19758 reflections
a = 10.2407 (1) Åθ = 4.3–75.8°
b = 13.1096 (1) ÅT = 293 K
c = 13.3608 (1) ÅIrregular, dark yellow
V = 1793.71 (3) Å30.24 × 0.12 × 0.04 mm
Z = 8
Data collection top
Rigaku XtaLAB Synergy Dualflex
diffractometer with a HyPix detector
1771 reflections with I 2σ(I)
Mirror monochromatorRint = 0.021
Detector resolution: 10.0000 pixels mm-1θmax = 76.7°, θmin = 6.4°
Absorption correction: multi-scan
(CrysAlis PRO; Rigaku OD, 2023)
h = 1012
Tmin = 0.835, Tmax = 1.000k = 1615
30686 measured reflectionsl = 1615
1860 independent reflections
Refinement top
Refinement on F27 restraints
Least-squares matrix: full14 constraints
R[F2 > 2σ(F2)] = 0.031H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.100 w = 1/[σ2(Fo2) + (0.0583P)2 + 0.3252P]
where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.0004
1860 reflectionsΔρmax = 0.21 e Å3
123 parametersΔρmin = 0.20 e Å3
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
S40.10294 (3)0.24581 (2)0.38637 (3)0.05356 (16)
N10.49752 (10)0.39800 (7)0.37360 (7)0.0403 (3)
N100.86190 (13)0.54926 (10)0.35533 (11)0.0609 (3)
C50.36975 (17)0.24670 (9)0.37695 (10)0.0459 (3)
H50.36706 (17)0.17580 (9)0.37615 (10)0.0551 (4)*
C30.26715 (12)0.40963 (9)0.38938 (9)0.0454 (3)
H30.19357 (12)0.45058 (9)0.39649 (9)0.0544 (4)*
C60.48718 (12)0.29426 (9)0.37100 (9)0.0447 (3)
H60.56254 (12)0.25515 (9)0.36501 (9)0.0537 (3)*
C40.25124 (12)0.30173 (9)0.38432 (8)0.0410 (3)
C70.62203 (13)0.44766 (10)0.36569 (9)0.0419 (3)
C20.38552 (12)0.45404 (9)0.38416 (9)0.0447 (3)
H20.39137 (12)0.52473 (9)0.38783 (9)0.0537 (4)*
C80.63032 (12)0.54499 (9)0.32552 (11)0.0497 (3)
H80.55663 (12)0.57796 (9)0.30087 (11)0.0596 (4)*
C120.73502 (13)0.40137 (11)0.39944 (11)0.0518 (3)
H120.73304 (13)0.33604 (11)0.42652 (11)0.0621 (4)*
C90.75121 (14)0.59143 (11)0.32322 (12)0.0572 (4)
C110.85143 (14)0.45488 (12)0.39189 (12)0.0605 (4)
H110.92727 (14)0.42285 (12)0.41377 (12)0.0726 (5)*
H90.7594 (16)0.6595 (13)0.2961 (14)0.078 (5)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
S40.0395 (2)0.0444 (2)0.0768 (3)0.00491 (11)0.00097 (13)0.00091 (13)
N10.0360 (5)0.0355 (5)0.0493 (5)0.0004 (4)0.0017 (4)0.0002 (4)
N100.0448 (6)0.0634 (7)0.0743 (8)0.0108 (6)0.0037 (6)0.0011 (6)
C50.0447 (7)0.0326 (6)0.0604 (8)0.0019 (4)0.0017 (5)0.0022 (5)
C30.0393 (6)0.0362 (6)0.0605 (7)0.0051 (5)0.0050 (5)0.0005 (5)
C60.0402 (6)0.0343 (6)0.0597 (7)0.0051 (5)0.0002 (5)0.0023 (5)
C40.0413 (6)0.0378 (6)0.0439 (6)0.0006 (5)0.0000 (4)0.0001 (4)
C70.0370 (6)0.0412 (6)0.0474 (6)0.0009 (5)0.0041 (4)0.0028 (5)
C20.0432 (7)0.0317 (6)0.0593 (7)0.0037 (4)0.0054 (5)0.0010 (4)
C80.0434 (6)0.0452 (7)0.0604 (8)0.0021 (5)0.0002 (6)0.0060 (5)
C120.0416 (7)0.0476 (7)0.0661 (8)0.0012 (5)0.0007 (6)0.0041 (6)
C90.0513 (7)0.0512 (7)0.0690 (9)0.0107 (6)0.0017 (6)0.0069 (6)
C110.0384 (7)0.0642 (9)0.0788 (10)0.0019 (6)0.0009 (6)0.0014 (7)
Geometric parameters (Å, º) top
S4—C41.6867 (12)C3—C21.3465 (18)
N1—C61.3646 (15)C6—H60.9300
N1—C71.4356 (16)C7—C81.3867 (18)
N1—C21.3694 (15)C7—C121.3823 (19)
N10—C91.3321 (19)C2—H20.9300
N10—C111.335 (2)C8—H80.9300
C5—H50.9300C8—C91.3800 (18)
C5—C61.357 (2)C12—H120.9300
C5—C41.415 (2)C12—C111.387 (2)
C3—H30.9300C9—H90.967 (17)
C3—C41.4255 (17)C11—H110.9300
C7—N1—C6121.27 (10)C12—C7—N1121.36 (11)
C2—N1—C6118.18 (10)C12—C7—C8118.62 (12)
C2—N1—C7120.55 (10)C3—C2—N1121.83 (11)
C11—N10—C9115.74 (13)H2—C2—N1119.08 (7)
C6—C5—H5119.00 (7)H2—C2—C3119.08 (7)
C4—C5—H5119.00 (7)H8—C8—C7121.00 (8)
C4—C5—C6121.99 (11)C9—C8—C7118.00 (12)
C4—C3—H3119.02 (7)C9—C8—H8121.00 (8)
C2—C3—H3119.02 (7)H12—C12—C7120.86 (8)
C2—C3—C4121.96 (11)C11—C12—C7118.28 (13)
C5—C6—N1121.69 (11)C11—C12—H12120.86 (9)
H6—C6—N1119.16 (7)C8—C9—N10124.97 (13)
H6—C6—C5119.16 (7)H9—C9—N10115.5 (10)
C5—C4—S4123.48 (10)H9—C9—C8119.6 (10)
C3—C4—S4122.24 (9)C12—C11—N10124.38 (14)
C3—C4—C5114.28 (11)H11—C11—N10117.81 (9)
C8—C7—N1120.01 (11)H11—C11—C12117.81 (9)
S4—C4—C5—C6177.01 (10)N1—C2—C3—C40.06 (14)
S4—C4—C3—C2177.61 (10)N10—C9—C8—C71.14 (19)
N1—C6—C5—C41.17 (14)N10—C11—C12—C71.00 (19)
N1—C7—C8—C9177.34 (12)C5—C4—C3—C22.05 (12)
N1—C7—C12—C11178.30 (13)
Comparison of selected bond lengths and torsion angles of the PTP molecule (Å, °) top
(I)(II)(III)TALPABTALPEFTALPIJCation formNeutral form
Distances
S4—C41.687 (1)1.674 (2)1.675 (2)1.6871.7001.7111.6321.655
C4—C5/C4—C31.420 (1)1.421 (2)1.425 (3)1.4301.4211.4171.4501.440
C5—C6/C2—C31.352 (2)1.353 (3)1.348 (3)1.3591.3561.3611.3381.349
C6—N1/C2—N11.367 (1)1.364 (2)1.375 (3)1.3711.3641.3661.4011.374
N1—C71.436 (1)1.428 (2)1.423 (3)1.4321.4381.4401.3671.417
C7—C12/C7—C81.385 (1)1.382 (3)1.390 (3)1.3851.3851.3801.4151.389
C12—C11/C8—C91.383 (2)1.377 (3)1.371 (3)1.3891.3871.3931.3621.386
C11—N10/C9—N101.334 (2)1.328 (3)1.337 (3)1.3391.3451.3371.3481.329
Torsion angles
C6—N1—C7—C1229.6 (1)-42.7 (3)-31.9 (3)-52.041.341.7-22.4-37.7
C2—N1—C7—C828.3 (1)-40.8 (3)-28.3 (3)-54.542.142.3-22.4-37.7
Parameters of selected hydrogen bonds for cocrystal structures (I)–(III) (Å, °) top
D—H···AD—HH···AD···AD—H···A
(I)
C2—H2···S4i0.932.903.827 (1)176
C8—H8···S4i0.932.973.647 (1)130
C11—H11···S4ii0.933.033.707 (1)131
(II)
C6—H6···O26iv0.932.643.487 (1)152
C3—H3···O28v0.932.573.456 (2)159
C9—H9···O26vi0.932.523.263 (3)137
C11—H11···O240.932.523.299 (3)142
C26—H26···O24vii0.932.613.473 (1)154
O27—H27···N10viii1.02 (3)1.57 (3)2.581 (2)171 (3)
(III)
C5—H5···O26ix0.932.413.268 (3)152
C6—H6···O28x0.932.283.111 (3)149
C12—H12···O28x0.932.543.416 (3)157
C11—H11···O25x0.932.463.381 (3)172
C9—H9···O24x0.932.593.115 (3)116
C3—H3···O24x0.932.723.543 (2)149
N10—H10···O24xi0.89 (3)2.53 (3)3.052 (3)118 (2)
N10—H10···O22xi0.89 (3)1.79 (3)2.666 (2)166 (3)
O27—H27···O22(intra)0.92 (3)1.64 (3)2.509 (2)156 (3)
Symmetry codes: (i) -x+1/2, y+1/2, z; (ii) x+1/2, -y+1/2, -z+1; (iii) x+1, y, z; (iv) x, -y+3/2, z+1/2; (v) x-1, -y+1/2, z+1/2; (vi) x, y+1, z; (vii) x, -y+1/2, z-1/2; (viii) -x+1, -y+1, -z; (ix) x+1/2, -y+1/2, -z; (x) -x+1, y-1/2, -z+1/2; (xi) x+1/2, -y+1/2, -z+1.
 

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