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The title peptide N-benzyl­oxy­carbonyl–ΔLeu–L-Ala–L-Leu–OCH3 [methyl N-(benzyl­oxy­carbonyl)-α,β-de­hydro­leucyl-L-alanyl-L-leucinate], C24H35N3O6, was synthesized in the solution phase. The peptide adopts a type II′ β-turn conformation which is stabilized by an intramolecular 4 \rightarrow 1 N—H...O hydrogen bond. The crystal packing is stabilized by two intermolecular N—H...O hydrogen bonds.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270101016468/de1174sup1.cif
Contains datablocks global, III

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108270101016468/de1174IIIsup2.hkl
Contains datablock III

CCDC reference: 184489

Computing details top

Data collection: SDP (Enraf-Nonius, 1979); cell refinement: SDP; data reduction: SDP; program(s) used to solve structure: SHELXS97 (Sheldrick, 1990); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLUTON-(C) (Spek, 1999); software used to prepare material for publication: SHELXL97.

methyl N-(benzyloxycarbonyl)-α,β-dehydroleucyl-L-alanyl-L-leucinate top
Crystal data top
C24H35N3O6F(000) = 496
Mr = 461.55Dx = 1.185 Mg m3
Monoclinic, P21Cu Kα radiation, λ = 1.54180 Å
a = 10.2550 (15) ÅCell parameters from 25 reflections
b = 9.5090 (14) Åθ = 0–25°
c = 13.4550 (14) ŵ = 0.70 mm1
β = 99.715 (11)°T = 293 K
V = 1293.9 (3) Å3Prism, colourless
Z = 20.3 × 0.2 × 0.1 mm
Data collection top
Enraf-Nonius CAD-4
diffractometer
2363 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.051
Graphite monochromatorθmax = 75.0°, θmin = 3.3°
ω–2θ scansh = 012
Absorption correction: empirical (using intensity measurements) via ψ scans (SDP; enraf-Nonius, 1979)k = 011
Tmin = 0.845, Tmax = 0.932l = 1616
2887 measured reflections3 standard reflections every 60 min
2731 independent reflections intensity decay: none
Refinement top
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.053H-atom parameters constrained
wR(F2) = 0.154Calculated w = 1/[σ2(Fo2) + (0.1P)2]
where P = (Fo2 + 2Fc2)/3
S = 1.14(Δ/σ)max = 0.001
2731 reflectionsΔρmax = 0.20 e Å3
298 parametersΔρmin = 0.20 e Å3
0 restraintsAbsolute structure: Flack (1983)
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.0 (4)
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C11.0337 (4)0.3539 (4)0.3469 (3)0.0555 (9)
C21.0353 (6)0.3454 (10)0.4489 (4)0.105 (2)
H02A0.97410.28840.48900.080*
C31.1259 (7)0.4199 (13)0.4922 (5)0.137 (4)
H03A1.12190.41650.56180.080*
C41.2196 (6)0.4972 (8)0.4360 (5)0.098 (2)
H04A1.28150.54580.46610.080*
C51.2236 (5)0.5041 (7)0.3350 (4)0.0828 (14)
H05A1.28860.55720.29520.080*
C61.1305 (5)0.4315 (6)0.2908 (4)0.0741 (12)
H06A1.13450.43630.22130.080*
C00.9304 (4)0.2747 (4)0.3027 (3)0.0559 (9)
H0A0.84450.31850.32270.080*
H0B0.92510.17850.32700.080*
O00.9661 (2)0.2765 (3)0.19625 (19)0.0536 (6)
C0P0.8808 (3)0.2181 (4)0.1426 (3)0.0447 (7)
O0P0.7806 (3)0.1559 (3)0.1800 (2)0.0576 (7)
N10.9214 (3)0.2367 (3)0.0443 (2)0.0469 (6)
H10.99480.27990.02420.080*
C1A0.8470 (3)0.1873 (3)0.0278 (2)0.0423 (7)
C1B0.8288 (3)0.2611 (4)0.1076 (3)0.0495 (8)
H1B0.77760.21810.14980.080*
C1G0.8801 (4)0.4056 (5)0.1393 (3)0.0631 (11)
H1G0.94370.43430.09630.080*
C1D10.7723 (6)0.5110 (6)0.1297 (6)0.106 (2)
H1DA0.72690.51330.06120.080*
H1DB0.80890.60200.14830.080*
H1DC0.71110.48580.17340.080*
C1D20.9496 (8)0.3989 (8)0.2458 (6)0.126 (3)
H1DE0.98310.49040.26680.080*
H1DF1.02170.33340.25090.080*
H1DG0.88870.36850.28840.080*
C1P0.7996 (3)0.0383 (3)0.0141 (2)0.0370 (6)
O1P0.8716 (2)0.0545 (3)0.0075 (2)0.0548 (6)
N20.6746 (2)0.0154 (2)0.02715 (18)0.0353 (5)
H20.62620.08580.03800.080*
C2A0.6189 (3)0.1252 (3)0.0234 (3)0.0415 (7)
H2A0.69200.18970.04740.080*
C2B0.5197 (5)0.1381 (5)0.0964 (3)0.0640 (10)
H2BA0.56060.10760.16230.080*
H2BB0.49240.23440.09950.080*
H2BC0.44380.08040.07310.080*
C2P0.5595 (3)0.1716 (3)0.0811 (2)0.0394 (6)
O2P0.4962 (3)0.2825 (3)0.0942 (2)0.0570 (7)
N30.5801 (3)0.0937 (3)0.1602 (2)0.0439 (6)
H30.61630.01210.15080.080*
C3A0.5411 (4)0.1476 (4)0.2609 (3)0.0521 (8)
H3A0.44600.16730.27100.080*
C3B0.5656 (4)0.0376 (5)0.3389 (3)0.0564 (9)
H3BA0.65450.00050.32000.080*
H3BB0.56050.08310.40400.080*
C3G0.4683 (5)0.0835 (6)0.3490 (4)0.0743 (13)
H3G0.45510.11050.28110.080*
C3D10.5232 (6)0.2101 (7)0.3970 (5)0.0953 (17)
H3DA0.60760.23510.35860.080*
H3DB0.46330.28790.39780.080*
H3DC0.53330.18750.46480.080*
C3D20.3372 (6)0.0468 (12)0.4082 (6)0.134 (3)
H3DD0.27990.12710.41210.080*
H3DE0.29930.02930.37580.080*
H3DF0.34770.01880.47490.080*
C3P0.6128 (6)0.2843 (5)0.2761 (4)0.0733 (12)
O3P0.5610 (6)0.3727 (4)0.3336 (3)0.1158 (17)
O4T0.7289 (3)0.2928 (4)0.2203 (4)0.0976 (13)
C4T0.7992 (8)0.4215 (8)0.2269 (8)0.152 (4)
H4TA0.88300.41720.18260.080*
H4TB0.81340.43500.29500.080*
H4TC0.74840.49850.20760.080*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C10.064 (2)0.0466 (19)0.059 (2)0.0080 (17)0.0176 (16)0.0106 (16)
C20.101 (4)0.154 (7)0.056 (3)0.036 (4)0.005 (2)0.013 (3)
C30.128 (5)0.221 (11)0.061 (3)0.051 (7)0.018 (3)0.030 (5)
C40.094 (4)0.111 (5)0.099 (4)0.004 (4)0.045 (3)0.038 (4)
C50.082 (3)0.081 (4)0.091 (3)0.016 (3)0.030 (3)0.001 (3)
C60.090 (3)0.072 (3)0.065 (2)0.019 (3)0.028 (2)0.009 (2)
C00.071 (2)0.0427 (18)0.0544 (19)0.0043 (17)0.0129 (17)0.0008 (16)
O00.0565 (12)0.0543 (15)0.0518 (12)0.0145 (12)0.0145 (10)0.0001 (11)
C0P0.0465 (15)0.0323 (14)0.0564 (17)0.0035 (13)0.0118 (12)0.0014 (13)
O0P0.0584 (13)0.0552 (16)0.0565 (14)0.0147 (12)0.0022 (11)0.0012 (12)
N10.0431 (12)0.0450 (16)0.0547 (15)0.0158 (12)0.0144 (11)0.0033 (12)
C1A0.0364 (13)0.0386 (16)0.0533 (17)0.0057 (12)0.0111 (12)0.0015 (13)
C1B0.0441 (15)0.0477 (19)0.0605 (19)0.0139 (15)0.0194 (13)0.0101 (16)
C1G0.064 (2)0.055 (2)0.077 (2)0.0290 (19)0.0310 (19)0.0214 (19)
C1D10.097 (4)0.051 (3)0.162 (6)0.013 (3)0.002 (4)0.020 (3)
C1D20.132 (5)0.076 (4)0.148 (6)0.016 (4)0.039 (5)0.030 (4)
C1P0.0349 (12)0.0319 (14)0.0448 (14)0.0048 (12)0.0084 (10)0.0040 (12)
O1P0.0452 (12)0.0405 (13)0.0822 (17)0.0134 (10)0.0208 (11)0.0039 (12)
N20.0392 (11)0.0209 (11)0.0468 (12)0.0000 (9)0.0102 (9)0.0003 (9)
C2A0.0447 (14)0.0225 (13)0.0587 (18)0.0025 (11)0.0125 (13)0.0055 (12)
C2B0.085 (3)0.055 (2)0.057 (2)0.027 (2)0.0267 (18)0.0005 (17)
C2P0.0392 (13)0.0249 (13)0.0568 (17)0.0030 (11)0.0159 (12)0.0001 (12)
O2P0.0629 (14)0.0383 (13)0.0738 (16)0.0213 (12)0.0226 (12)0.0065 (12)
N30.0535 (14)0.0278 (12)0.0511 (15)0.0077 (11)0.0108 (11)0.0009 (10)
C3A0.0612 (19)0.0439 (18)0.0517 (19)0.0138 (16)0.0111 (15)0.0056 (15)
C3B0.064 (2)0.060 (2)0.0464 (17)0.0099 (19)0.0128 (15)0.0015 (16)
C3G0.082 (3)0.083 (3)0.059 (2)0.016 (3)0.017 (2)0.014 (2)
C3D10.112 (4)0.076 (4)0.098 (4)0.015 (3)0.017 (3)0.028 (3)
C3D20.079 (3)0.180 (9)0.137 (6)0.000 (5)0.004 (3)0.077 (6)
C3P0.104 (3)0.043 (2)0.079 (3)0.016 (2)0.034 (2)0.017 (2)
O3P0.190 (5)0.059 (2)0.098 (3)0.022 (3)0.025 (3)0.039 (2)
O4T0.075 (2)0.060 (2)0.162 (4)0.0089 (18)0.029 (2)0.034 (2)
C4T0.140 (6)0.069 (4)0.265 (12)0.035 (4)0.087 (7)0.016 (6)
Geometric parameters (Å, º) top
C1—C61.359 (6)C1P—N21.341 (4)
C1—C21.377 (6)N2—C2A1.451 (4)
C1—C01.502 (5)N2—H20.8600
C2—C31.374 (9)C2A—C2P1.500 (5)
C2—H02A0.9300C2A—C2B1.535 (5)
C3—C41.338 (11)C2A—H2A0.9800
C3—H03A0.9300C2B—H2BA0.9600
C4—C51.355 (8)C2B—H2BB0.9600
C4—H04A0.9300C2B—H2BC0.9600
C5—C61.391 (7)C2P—O2P1.235 (4)
C5—H05A0.9300C2P—N31.343 (4)
C6—H06A0.9300N3—C3A1.441 (4)
C0—O01.417 (4)N3—H30.8600
C0—H0A0.9700C3A—C3P1.524 (6)
C0—H0B0.9700C3A—C3B1.533 (5)
O0—C0P1.345 (4)C3A—H3A0.9800
C0P—O0P1.218 (4)C3B—C3G1.515 (7)
C0P—N11.329 (4)C3B—H3BA0.9700
N1—C1A1.413 (4)C3B—H3BB0.9700
N1—H10.8600C3G—C3D21.483 (9)
C1A—C1B1.322 (5)C3G—C3D11.518 (8)
C1A—C1P1.500 (4)C3G—H3G0.9800
C1B—C1G1.507 (5)C3D1—H3DA0.9600
C1B—H1B0.9300C3D1—H3DB0.9600
C1G—C1D11.482 (8)C3D1—H3DC0.9600
C1G—C1D21.490 (8)C3D2—H3DD0.9600
C1G—H1G0.9800C3D2—H3DE0.9600
C1D1—H1DA0.9600C3D2—H3DF0.9600
C1D1—H1DB0.9600C3P—O3P1.204 (6)
C1D1—H1DC0.9600C3P—O4T1.298 (7)
C1D2—H1DE0.9600O4T—C4T1.430 (7)
C1D2—H1DF0.9600C4T—H4TA0.9600
C1D2—H1DG0.9600C4T—H4TB0.9600
C1P—O1P1.217 (4)C4T—H4TC0.9600
C6—C1—C2117.0 (4)C2A—N2—H2119.2
C6—C1—C0123.4 (4)N2—C2A—C2P113.5 (3)
C2—C1—C0119.6 (4)N2—C2A—C2B110.5 (3)
C3—C2—C1121.0 (6)C2P—C2A—C2B111.6 (3)
C3—C2—H02A119.5N2—C2A—H2A106.9
C1—C2—H02A119.5C2P—C2A—H2A106.9
C4—C3—C2121.1 (6)C2B—C2A—H2A106.9
C4—C3—H03A119.5C2A—C2B—H2BA109.5
C2—C3—H03A119.5C2A—C2B—H2BB109.5
C3—C4—C5119.4 (5)H2BA—C2B—H2BB109.5
C3—C4—H04A120.3C2A—C2B—H2BC109.5
C5—C4—H04A120.3H2BA—C2B—H2BC109.5
C4—C5—C6119.9 (5)H2BB—C2B—H2BC109.5
C4—C5—H05A120.1O2P—C2P—N3120.5 (3)
C6—C5—H05A120.1O2P—C2P—C2A120.4 (3)
C1—C6—C5121.5 (4)N3—C2P—C2A119.1 (3)
C1—C6—H06A119.3C2P—N3—C3A119.6 (3)
C5—C6—H06A119.3C2P—N3—H3120.2
O0—C0—C1108.4 (3)C3A—N3—H3120.2
O0—C0—H0A110.0N3—C3A—C3P111.5 (3)
C1—C0—H0A110.0N3—C3A—C3B110.5 (3)
O0—C0—H0B110.0C3P—C3A—C3B110.6 (3)
C1—C0—H0B110.0N3—C3A—H3A108.0
H0A—C0—H0B108.4C3P—C3A—H3A108.0
C0P—O0—C0117.2 (3)C3B—C3A—H3A108.0
O0P—C0P—N1125.2 (3)C3G—C3B—C3A113.5 (3)
O0P—C0P—O0124.0 (3)C3G—C3B—H3BA108.9
N1—C0P—O0110.9 (3)C3A—C3B—H3BA108.9
C0P—N1—C1A121.6 (3)C3G—C3B—H3BB108.9
C0P—N1—H1119.2C3A—C3B—H3BB108.9
C1A—N1—H1119.2H3BA—C3B—H3BB107.7
C1B—C1A—N1123.3 (3)C3D2—C3G—C3B113.1 (6)
C1B—C1A—C1P120.9 (3)C3D2—C3G—C3D1109.0 (5)
N1—C1A—C1P115.5 (3)C3B—C3G—C3D1110.8 (4)
C1A—C1B—C1G128.5 (3)C3D2—C3G—H3G107.9
C1A—C1B—H1B115.7C3B—C3G—H3G107.9
C1G—C1B—H1B115.7C3D1—C3G—H3G107.9
C1D1—C1G—C1D2109.9 (5)C3G—C3D1—H3DA109.5
C1D1—C1G—C1B111.8 (3)C3G—C3D1—H3DB109.5
C1D2—C1G—C1B108.7 (4)H3DA—C3D1—H3DB109.5
C1D1—C1G—H1G108.8C3G—C3D1—H3DC109.5
C1D2—C1G—H1G108.8H3DA—C3D1—H3DC109.5
C1B—C1G—H1G108.8H3DB—C3D1—H3DC109.5
C1G—C1D1—H1DA109.5C3G—C3D2—H3DD109.5
C1G—C1D1—H1DB109.5C3G—C3D2—H3DE109.5
H1DA—C1D1—H1DB109.5H3DD—C3D2—H3DE109.5
C1G—C1D1—H1DC109.5C3G—C3D2—H3DF109.5
H1DA—C1D1—H1DC109.5H3DD—C3D2—H3DF109.5
H1DB—C1D1—H1DC109.5H3DE—C3D2—H3DF109.5
C1G—C1D2—H1DE109.5O3P—C3P—O4T126.2 (5)
C1G—C1D2—H1DF109.5O3P—C3P—C3A120.8 (5)
H1DE—C1D2—H1DF109.5O4T—C3P—C3A113.0 (4)
C1G—C1D2—H1DG109.5C3P—O4T—C4T116.1 (5)
H1DE—C1D2—H1DG109.5O4T—C4T—H4TA109.5
H1DF—C1D2—H1DG109.5O4T—C4T—H4TB109.5
O1P—C1P—N2123.1 (3)H4TA—C4T—H4TB109.5
O1P—C1P—C1A121.1 (3)O4T—C4T—H4TC109.5
N2—C1P—C1A115.7 (3)H4TA—C4T—H4TC109.5
C1P—N2—C2A121.6 (2)H4TB—C4T—H4TC109.5
C1P—N2—H2119.2
C6—C1—C2—C34.1 (11)N1—C1A—C1P—N2137.2 (3)
C0—C1—C2—C3178.0 (7)O1P—C1P—N2—C2A4.5 (4)
C1—C2—C3—C43.5 (15)C1A—C1P—N2—C2A175.5 (3)
C2—C3—C4—C51.2 (14)C1P—N2—C2A—C2P87.2 (3)
C3—C4—C5—C60.2 (11)C1P—N2—C2A—C2B146.5 (3)
C2—C1—C6—C52.7 (8)N2—C2A—C2P—O2P172.2 (3)
C0—C1—C6—C5179.5 (5)C2B—C2A—C2P—O2P46.5 (4)
C4—C5—C6—C10.5 (9)N2—C2A—C2P—N310.2 (4)
C6—C1—C0—O09.7 (6)C2B—C2A—C2P—N3135.9 (3)
C2—C1—C0—O0168.0 (5)O2P—C2P—N3—C3A7.0 (5)
C1—C0—O0—C0P175.9 (3)C2A—C2P—N3—C3A170.6 (3)
C0—O0—C0P—O0P5.3 (5)C2P—N3—C3A—C3P60.3 (4)
C0—O0—C0P—N1175.2 (3)C2P—N3—C3A—C3B176.3 (3)
O0P—C0P—N1—C1A1.9 (5)N3—C3A—C3B—C3G73.0 (4)
O0—C0P—N1—C1A178.7 (3)C3P—C3A—C3B—C3G163.1 (4)
C0P—N1—C1A—C1B137.8 (4)C3A—C3B—C3G—C3D277.1 (5)
C0P—N1—C1A—C1P47.9 (4)C3A—C3B—C3G—C3D1160.1 (4)
N1—C1A—C1B—C1G0.4 (6)N3—C3A—C3P—O3P149.4 (5)
C1P—C1A—C1B—C1G173.6 (4)C3B—C3A—C3P—O3P87.3 (5)
C1A—C1B—C1G—C1D1111.1 (5)N3—C3A—C3P—O4T29.3 (5)
C1A—C1B—C1G—C1D2127.3 (5)C3B—C3A—C3P—O4T94.0 (5)
C1B—C1A—C1P—O1P131.6 (4)O3P—C3P—O4T—C4T1.7 (9)
N1—C1A—C1P—O1P42.8 (4)C3A—C3P—O4T—C4T177.0 (5)
C1B—C1A—C1P—N248.4 (4)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1···O1Pi0.862.082.904 (4)159
N2—H2···O2Pii0.862.012.848 (4)165
N3—H3···O0P0.862.403.181 (7)151
Symmetry codes: (i) x+2, y+1/2, z; (ii) x+1, y+1/2, z.
 

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