Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807030231/pk2028sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807030231/pk2028Isup2.hkl |
CCDC reference: 655038
Key indicators
- Single-crystal X-ray study
- T = 298 K
- Mean (C-C) = 0.003 Å
- Disorder in main residue
- R factor = 0.058
- wR factor = 0.178
- Data-to-parameter ratio = 17.8
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT153_ALERT_1_C The su's on the Cell Axes are Equal (x 100000) 20 Ang. PLAT154_ALERT_1_C The su's on the Cell Angles are Equal (x 10000) 100 Deg. PLAT180_ALERT_3_C Check Cell Rounding: # of Values Ending with 0 = 3 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C21' PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C23' PLAT301_ALERT_3_C Main Residue Disorder ......................... 11.00 Perc.
Alert level G PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 13
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 6 ALERT level C = Check and explain 1 ALERT level G = General alerts; check 2 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 2 ALERT type 2 Indicator that the structure model may be wrong or deficient 3 ALERT type 3 Indicator that the structure quality may be low 0 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
For related literature, see: Stavis et al., (2005); Teske et al., (2006); Yee et al., (2005); Peng et al., (2007); Yu et al., (2007).
2,4-Dimethylpyrrole (2.16 ml) and 4-[N,N-Bis(2-chloroethyl)amino]benzaldehyde (3.04 g) were added to CH2Cl2 (800 ml) in a 1 l round-bottom flask. The mixture was bubbled with N2 and trifluoroacetic acid (0.19 ml) was added and then stirred for 1.5 h. The resulting solution was washed with 0.1 M NaOH (200 ml) and then water (200 ml), dried over anhydrous Na2SO4, and filtered, and the solvent was evaporated on a rotary evaporator. The resultant product was immediately redissolved in toluene (50 ml), and p-chloranil (2.73 g) was added. After the mixture stirred for 10 min, triethylamine (8 ml), and boron trifluoride etherate (7 ml) were added. The mixture was stirred for 1.5 h, poured into water, and extracted with toluene. The toluene solution was extracted three times with 100 ml portions of water, and the solvent was evaporated on a rotary evaporator. The residue was redissolved in chloroform and subjected to silica gel flash column chromatography. Elution with EtOAc/hexane(1:8, v/v) yielded 2.18 g of the title compound (38.03%).
The H atoms were positioned geometrically (C—H = 0.93–0.96 Å) and refined as riding, with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(methyl C).
Boron-dipyrromethene (BODIPY) dyes are well known and have attracted much interest in the design of fluorescence labels (Stavis et al., 2005; Teske et al., 2006; Yee et al., 2005) and molecular fluorescence sensors (Peng et al., 2007). Detailed information on their molecular and crystal structures is necessary to understand their photophysical and photochemical properties (Yu et al., 2007). As part of our work on BODIPY compounds, we report here the synthesis and crystal structure (Fig.1) of the title compound.
As shown in Fig.1, the main skeleton of the molecule, which is formed from three fused heterocyclic rings, is close to planar with an r.m.s. deviation of 0.024 (9) Å. The maximum deviations from the mean plane for C4, C2 and N1 are 0.043 (3) Å, 0.043 (1) Å and 0.045 (0) Å, respectively. The two B—N bond lengths are nearly the same, indicating delocalization of the charge on them. Due to steric repulsion from the C1 and C10 methyl groups, the phenyl ring is twisted out of the plane of the BODIPY fused-ring system leading to a dihedral angle of 74.9 (8)° between phenyl and BODIPY groups. The two chlorine atoms are disordered with refined major:minor occupancies of 0.851 (8):0.149 (8) and 0.605 (19):0.395 (19) for Cl1/Cl1' and Cl2/Cl2' respectively.
For related literature, see: Stavis et al., (2005); Teske et al., (2006); Yee et al., (2005); Peng et al., (2007); Yu et al., (2007).
Data collection: SMART (Bruker, 2005); cell refinement: SMART; data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 1997); software used to prepare material for publication: SHELXTL.
C23H26BCl2F2N3 | Z = 2 |
Mr = 464.18 | F(000) = 484 |
Triclinic, P1 | Dx = 1.317 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.2673 (2) Å | Cell parameters from 3630 reflections |
b = 12.3571 (2) Å | θ = 2.3–27.5° |
c = 13.2963 (2) Å | µ = 0.31 mm−1 |
α = 92.650 (1)° | T = 298 K |
β = 101.089 (1)° | Block, brown red |
γ = 90.205 (1)° | 0.55 × 0.35 × 0.35 mm |
V = 1170.40 (4) Å3 |
Bruker SMART CCD area-detector diffractometer | 3776 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.016 |
Graphite monochromator | θmax = 27.5°, θmin = 2.3° |
φ and ω scans | h = −7→9 |
10164 measured reflections | k = −16→15 |
5337 independent reflections | l = −17→16 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.058 | H-atom parameters constrained |
wR(F2) = 0.178 | w = 1/[σ2(Fo2) + (0.0997P)2 + 0.2019P] where P = (Fo2 + 2Fc2)/3 |
S = 1.03 | (Δ/σ)max < 0.001 |
5337 reflections | Δρmax = 0.36 e Å−3 |
299 parameters | Δρmin = −0.47 e Å−3 |
13 restraints | Extinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.029 (4) |
C23H26BCl2F2N3 | γ = 90.205 (1)° |
Mr = 464.18 | V = 1170.40 (4) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.2673 (2) Å | Mo Kα radiation |
b = 12.3571 (2) Å | µ = 0.31 mm−1 |
c = 13.2963 (2) Å | T = 298 K |
α = 92.650 (1)° | 0.55 × 0.35 × 0.35 mm |
β = 101.089 (1)° |
Bruker SMART CCD area-detector diffractometer | 3776 reflections with I > 2σ(I) |
10164 measured reflections | Rint = 0.016 |
5337 independent reflections |
R[F2 > 2σ(F2)] = 0.058 | 13 restraints |
wR(F2) = 0.178 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.36 e Å−3 |
5337 reflections | Δρmin = −0.47 e Å−3 |
299 parameters |
Experimental. 1H NMR (CDCl3, 400 MHz, Me4Si): δ 1.46 (s, 6H, CH3–H), 2.55 (s, 6H, CH3–H), 3.66 (t, 4H, ClCH2–H), 3.78 (t, 4H, NCH2–H), 5.98 (s, 2H, pyrrole–H), 6.78 (d, 2H, Ar–H), 7.11 (d, 2H, Ar–H). 13C NMR (CDCl3, 400 MHz, Me4Si): δ 14.76, 14.86, 40.42, 53.62, 112.38, 121.21, 124.01, 129.64, 132.20, 142.37, 143.24, 146.79, 155.26. HRMS (TOF MS EI+): 486.1463, calculated: 486.1483. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
N1 | 0.5707 (2) | 0.89735 (12) | 0.76379 (11) | 0.0478 (4) | |
N2 | 0.2896 (2) | 0.77838 (13) | 0.74161 (11) | 0.0489 (4) | |
N3 | 0.5791 (3) | 0.64166 (13) | 0.21042 (12) | 0.0601 (4) | |
B1 | 0.4133 (3) | 0.85947 (19) | 0.81732 (17) | 0.0539 (5) | |
F1 | 0.4908 (2) | 0.80832 (12) | 0.90633 (9) | 0.0805 (4) | |
F2 | 0.30906 (19) | 0.94655 (11) | 0.84098 (12) | 0.0804 (4) | |
C1 | 0.1105 (3) | 0.6381 (2) | 0.48592 (18) | 0.0703 (6) | |
H1A | 0.1946 | 0.5808 | 0.4753 | 0.105* | |
H1B | 0.1209 | 0.6947 | 0.4403 | 0.105* | |
H1C | −0.0159 | 0.6103 | 0.4725 | 0.105* | |
C2 | 0.1600 (3) | 0.68206 (16) | 0.59418 (15) | 0.0545 (4) | |
C3 | 0.0532 (3) | 0.66843 (18) | 0.66860 (18) | 0.0627 (5) | |
H3 | −0.0553 | 0.6261 | 0.6603 | 0.075* | |
C4 | 0.1330 (3) | 0.72743 (17) | 0.75713 (17) | 0.0584 (5) | |
C5 | 0.0672 (4) | 0.7367 (2) | 0.8574 (2) | 0.0809 (7) | |
H5A | 0.1515 | 0.6987 | 0.9080 | 0.121* | |
H5B | −0.0564 | 0.7058 | 0.8489 | 0.121* | |
H5C | 0.0646 | 0.8117 | 0.8793 | 0.121* | |
C6 | 0.7403 (4) | 1.0122 (2) | 0.91238 (18) | 0.0775 (7) | |
H6A | 0.6195 | 1.0272 | 0.9286 | 0.116* | |
H6B | 0.8118 | 1.0784 | 0.9173 | 0.116* | |
H6C | 0.8052 | 0.9624 | 0.9598 | 0.116* | |
C7 | 0.7161 (3) | 0.96361 (16) | 0.80636 (16) | 0.0573 (5) | |
C8 | 0.8329 (3) | 0.97433 (17) | 0.73636 (18) | 0.0627 (5) | |
H8 | 0.9422 | 1.0162 | 0.7474 | 0.075* | |
C9 | 0.7617 (3) | 0.91306 (15) | 0.64747 (16) | 0.0542 (5) | |
C10 | 0.8506 (3) | 0.9042 (2) | 0.5557 (2) | 0.0727 (6) | |
H10A | 0.7881 | 0.9512 | 0.5047 | 0.109* | |
H10B | 0.8406 | 0.8308 | 0.5282 | 0.109* | |
H10C | 0.9805 | 0.9251 | 0.5749 | 0.109* | |
C11 | 0.5935 (2) | 0.86418 (14) | 0.66511 (13) | 0.0456 (4) | |
C12 | 0.4655 (2) | 0.79184 (13) | 0.60480 (12) | 0.0432 (4) | |
C13 | 0.3126 (2) | 0.75103 (14) | 0.64168 (13) | 0.0465 (4) | |
C14 | 0.4939 (2) | 0.75405 (14) | 0.50174 (13) | 0.0457 (4) | |
C15 | 0.4565 (3) | 0.81847 (16) | 0.41816 (15) | 0.0613 (5) | |
H15 | 0.4119 | 0.8881 | 0.4266 | 0.074* | |
C16 | 0.4836 (4) | 0.78230 (17) | 0.32286 (15) | 0.0668 (6) | |
H16 | 0.4575 | 0.8282 | 0.2685 | 0.080* | |
C17 | 0.5494 (3) | 0.67820 (15) | 0.30565 (13) | 0.0496 (4) | |
C18 | 0.5851 (3) | 0.61276 (14) | 0.39045 (13) | 0.0470 (4) | |
H18 | 0.6279 | 0.5427 | 0.3823 | 0.056* | |
C19 | 0.5580 (2) | 0.65029 (14) | 0.48527 (13) | 0.0453 (4) | |
H19 | 0.5832 | 0.6049 | 0.5400 | 0.054* | |
C20 | 0.6060 (4) | 0.52832 (19) | 0.18816 (17) | 0.0719 (6) | |
H20A | 0.7034 | 0.5016 | 0.2413 | 0.086* | |
H20B | 0.6492 | 0.5202 | 0.1236 | 0.086* | |
C21 | 0.4299 (5) | 0.4592 (2) | 0.1811 (2) | 0.0951 (9) | 0.851 (8) |
H21A | 0.3871 | 0.4655 | 0.2459 | 0.114* | 0.851 (8) |
H21B | 0.4590 | 0.3838 | 0.1686 | 0.114* | 0.851 (8) |
Cl1 | 0.24906 (19) | 0.49980 (10) | 0.08129 (12) | 0.0987 (6) | 0.851 (8) |
C21' | 0.4299 (5) | 0.4592 (2) | 0.1811 (2) | 0.0951 (9) | 0.149 (8) |
H21C | 0.4203 | 0.4416 | 0.2503 | 0.114* | 0.149 (8) |
H21D | 0.4479 | 0.3916 | 0.1444 | 0.114* | 0.149 (8) |
Cl1' | 0.2157 (19) | 0.5112 (12) | 0.123 (2) | 0.177 (5)* | 0.149 (8) |
C22 | 0.5763 (4) | 0.7157 (2) | 0.12880 (15) | 0.0736 (6) | |
H22A | 0.4616 | 0.7571 | 0.1212 | 0.088* | |
H22B | 0.5743 | 0.6740 | 0.0650 | 0.088* | |
C23 | 0.7391 (5) | 0.7925 (2) | 0.1464 (2) | 0.1021 (10) | 0.605 (19) |
H23A | 0.7473 | 0.8303 | 0.2127 | 0.122* | 0.605 (19) |
H23B | 0.7181 | 0.8460 | 0.0944 | 0.122* | 0.605 (19) |
Cl2 | 0.9506 (7) | 0.7285 (3) | 0.1428 (6) | 0.1265 (15) | 0.605 (19) |
C23' | 0.7391 (5) | 0.7925 (2) | 0.1464 (2) | 0.1021 (10) | 0.395 (19) |
H23C | 0.7273 | 0.8447 | 0.2014 | 0.122* | 0.395 (19) |
H23D | 0.7384 | 0.8317 | 0.0848 | 0.122* | 0.395 (19) |
Cl2' | 0.9593 (12) | 0.7225 (7) | 0.1794 (12) | 0.170 (3) | 0.395 (19) |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0511 (8) | 0.0480 (8) | 0.0430 (8) | −0.0007 (6) | 0.0059 (6) | 0.0008 (6) |
N2 | 0.0529 (8) | 0.0517 (8) | 0.0445 (8) | −0.0005 (6) | 0.0150 (6) | 0.0039 (6) |
N3 | 0.0892 (12) | 0.0533 (9) | 0.0410 (8) | 0.0024 (8) | 0.0203 (8) | 0.0029 (7) |
B1 | 0.0622 (12) | 0.0569 (12) | 0.0440 (11) | −0.0007 (10) | 0.0148 (9) | −0.0005 (9) |
F1 | 0.1003 (10) | 0.0957 (10) | 0.0423 (6) | −0.0168 (8) | 0.0036 (6) | 0.0149 (6) |
F2 | 0.0800 (9) | 0.0718 (8) | 0.0938 (10) | 0.0025 (7) | 0.0346 (7) | −0.0246 (7) |
C1 | 0.0573 (12) | 0.0789 (15) | 0.0679 (14) | −0.0061 (10) | −0.0006 (10) | −0.0127 (11) |
C2 | 0.0487 (10) | 0.0528 (10) | 0.0593 (11) | 0.0008 (8) | 0.0043 (8) | −0.0003 (8) |
C3 | 0.0516 (10) | 0.0631 (12) | 0.0741 (14) | −0.0093 (9) | 0.0142 (9) | 0.0040 (10) |
C4 | 0.0556 (10) | 0.0591 (11) | 0.0659 (12) | −0.0007 (9) | 0.0232 (9) | 0.0099 (9) |
C5 | 0.0847 (16) | 0.0926 (17) | 0.0770 (16) | −0.0041 (13) | 0.0432 (13) | 0.0111 (13) |
C6 | 0.0873 (16) | 0.0758 (15) | 0.0597 (13) | −0.0107 (12) | −0.0066 (11) | −0.0098 (11) |
C7 | 0.0585 (11) | 0.0505 (10) | 0.0580 (11) | −0.0018 (8) | −0.0007 (9) | 0.0029 (8) |
C8 | 0.0554 (11) | 0.0561 (11) | 0.0744 (14) | −0.0096 (9) | 0.0063 (10) | 0.0081 (10) |
C9 | 0.0535 (10) | 0.0471 (9) | 0.0644 (12) | 0.0005 (8) | 0.0146 (9) | 0.0136 (8) |
C10 | 0.0698 (13) | 0.0726 (14) | 0.0854 (16) | 0.0000 (11) | 0.0348 (12) | 0.0221 (12) |
C11 | 0.0486 (9) | 0.0443 (9) | 0.0446 (9) | 0.0035 (7) | 0.0097 (7) | 0.0075 (7) |
C12 | 0.0484 (9) | 0.0419 (8) | 0.0401 (8) | 0.0069 (7) | 0.0095 (7) | 0.0068 (7) |
C13 | 0.0488 (9) | 0.0461 (9) | 0.0441 (9) | 0.0017 (7) | 0.0081 (7) | 0.0015 (7) |
C14 | 0.0514 (9) | 0.0458 (9) | 0.0402 (9) | 0.0040 (7) | 0.0096 (7) | 0.0037 (7) |
C15 | 0.0917 (15) | 0.0483 (10) | 0.0467 (10) | 0.0224 (10) | 0.0180 (10) | 0.0097 (8) |
C16 | 0.1033 (17) | 0.0577 (11) | 0.0420 (10) | 0.0247 (11) | 0.0165 (10) | 0.0169 (8) |
C17 | 0.0630 (11) | 0.0492 (9) | 0.0375 (9) | 0.0041 (8) | 0.0115 (8) | 0.0038 (7) |
C18 | 0.0576 (10) | 0.0406 (8) | 0.0430 (9) | 0.0049 (7) | 0.0097 (7) | 0.0030 (7) |
C19 | 0.0518 (9) | 0.0435 (9) | 0.0403 (9) | 0.0020 (7) | 0.0067 (7) | 0.0088 (7) |
C20 | 0.1028 (17) | 0.0660 (13) | 0.0484 (11) | 0.0183 (12) | 0.0199 (11) | −0.0043 (9) |
C21 | 0.149 (3) | 0.0555 (13) | 0.0733 (16) | −0.0035 (15) | 0.0061 (17) | −0.0082 (12) |
Cl1 | 0.1037 (8) | 0.1132 (8) | 0.0763 (8) | −0.0152 (5) | 0.0128 (5) | −0.0067 (5) |
C21' | 0.149 (3) | 0.0555 (13) | 0.0733 (16) | −0.0035 (15) | 0.0061 (17) | −0.0082 (12) |
C22 | 0.1150 (19) | 0.0703 (14) | 0.0382 (10) | 0.0052 (13) | 0.0203 (11) | 0.0079 (9) |
C23 | 0.165 (3) | 0.0740 (16) | 0.0763 (17) | −0.0158 (18) | 0.0457 (19) | 0.0090 (14) |
Cl2 | 0.127 (2) | 0.1102 (19) | 0.155 (3) | −0.0298 (15) | 0.067 (2) | −0.018 (2) |
C23' | 0.165 (3) | 0.0740 (16) | 0.0763 (17) | −0.0158 (18) | 0.0457 (19) | 0.0090 (14) |
Cl2' | 0.108 (3) | 0.194 (5) | 0.215 (7) | −0.011 (3) | 0.031 (4) | 0.092 (5) |
N1—C7 | 1.352 (2) | C9—C11 | 1.426 (3) |
N1—C11 | 1.397 (2) | C9—C10 | 1.486 (3) |
N1—B1 | 1.541 (3) | C10—H10A | 0.9600 |
N2—C4 | 1.354 (2) | C10—H10B | 0.9600 |
N2—C13 | 1.397 (2) | C10—H10C | 0.9600 |
N2—B1 | 1.542 (3) | C11—C12 | 1.396 (2) |
N3—C17 | 1.381 (2) | C12—C13 | 1.399 (2) |
N3—C20 | 1.440 (3) | C12—C14 | 1.479 (2) |
N3—C22 | 1.449 (3) | C14—C15 | 1.382 (2) |
B1—F2 | 1.377 (3) | C14—C19 | 1.388 (2) |
B1—F1 | 1.390 (3) | C15—C16 | 1.374 (3) |
C1—C2 | 1.491 (3) | C15—H15 | 0.9300 |
C1—H1A | 0.9600 | C16—C17 | 1.398 (3) |
C1—H1B | 0.9600 | C16—H16 | 0.9300 |
C1—H1C | 0.9600 | C17—C18 | 1.402 (2) |
C2—C3 | 1.385 (3) | C18—C19 | 1.373 (2) |
C2—C13 | 1.425 (3) | C18—H18 | 0.9300 |
C3—C4 | 1.381 (3) | C19—H19 | 0.9300 |
C3—H3 | 0.9300 | C20—C21 | 1.521 (4) |
C4—C5 | 1.500 (3) | C20—H20A | 0.9700 |
C5—H5A | 0.9600 | C20—H20B | 0.9700 |
C5—H5B | 0.9600 | C21—Cl1 | 1.771 (3) |
C5—H5C | 0.9600 | C21—H21A | 0.9700 |
C6—C7 | 1.485 (3) | C21—H21B | 0.9700 |
C6—H6A | 0.9600 | C22—C23 | 1.490 (4) |
C6—H6B | 0.9600 | C22—H22A | 0.9700 |
C6—H6C | 0.9600 | C22—H22B | 0.9700 |
C7—C8 | 1.385 (3) | C23—Cl2 | 1.738 (6) |
C8—C9 | 1.385 (3) | C23—H23A | 0.9700 |
C8—H8 | 0.9300 | C23—H23B | 0.9700 |
C7—N1—C11 | 108.32 (16) | C9—C10—H10C | 109.5 |
C7—N1—B1 | 125.80 (16) | H10A—C10—H10C | 109.5 |
C11—N1—B1 | 125.78 (15) | H10B—C10—H10C | 109.5 |
C4—N2—C13 | 108.03 (16) | C12—C11—N1 | 120.37 (15) |
C4—N2—B1 | 126.30 (16) | C12—C11—C9 | 131.70 (17) |
C13—N2—B1 | 125.52 (15) | N1—C11—C9 | 107.89 (16) |
C17—N3—C20 | 120.94 (16) | C11—C12—C13 | 120.92 (16) |
C17—N3—C22 | 120.87 (17) | C11—C12—C14 | 120.12 (15) |
C20—N3—C22 | 118.14 (17) | C13—C12—C14 | 118.92 (15) |
F2—B1—F1 | 109.83 (17) | N2—C13—C12 | 120.45 (16) |
F2—B1—N1 | 110.24 (17) | N2—C13—C2 | 108.03 (16) |
F1—B1—N1 | 109.69 (17) | C12—C13—C2 | 131.52 (17) |
F2—B1—N2 | 110.44 (17) | C15—C14—C19 | 117.18 (16) |
F1—B1—N2 | 109.78 (17) | C15—C14—C12 | 122.32 (15) |
N1—B1—N2 | 106.82 (15) | C19—C14—C12 | 120.50 (15) |
C2—C1—H1A | 109.5 | C16—C15—C14 | 121.69 (17) |
C2—C1—H1B | 109.5 | C16—C15—H15 | 119.2 |
H1A—C1—H1B | 109.5 | C14—C15—H15 | 119.2 |
C2—C1—H1C | 109.5 | C15—C16—C17 | 121.56 (17) |
H1A—C1—H1C | 109.5 | C15—C16—H16 | 119.2 |
H1B—C1—H1C | 109.5 | C17—C16—H16 | 119.2 |
C3—C2—C13 | 105.50 (17) | N3—C17—C16 | 121.94 (16) |
C3—C2—C1 | 125.10 (19) | N3—C17—C18 | 121.54 (16) |
C13—C2—C1 | 129.27 (19) | C16—C17—C18 | 116.52 (16) |
C4—C3—C2 | 109.38 (18) | C19—C18—C17 | 121.19 (16) |
C4—C3—H3 | 125.3 | C19—C18—H18 | 119.4 |
C2—C3—H3 | 125.3 | C17—C18—H18 | 119.4 |
N2—C4—C3 | 109.04 (18) | C18—C19—C14 | 121.86 (15) |
N2—C4—C5 | 122.6 (2) | C18—C19—H19 | 119.1 |
C3—C4—C5 | 128.32 (19) | C14—C19—H19 | 119.1 |
C4—C5—H5A | 109.5 | N3—C20—C21 | 113.8 (2) |
C4—C5—H5B | 109.5 | N3—C20—H20A | 108.8 |
H5A—C5—H5B | 109.5 | C21—C20—H20A | 108.8 |
C4—C5—H5C | 109.5 | N3—C20—H20B | 108.8 |
H5A—C5—H5C | 109.5 | C21—C20—H20B | 108.8 |
H5B—C5—H5C | 109.5 | H20A—C20—H20B | 107.7 |
C7—C6—H6A | 109.5 | C20—C21—Cl1 | 111.20 (19) |
C7—C6—H6B | 109.5 | C20—C21—H21A | 109.4 |
H6A—C6—H6B | 109.5 | Cl1—C21—H21A | 109.4 |
C7—C6—H6C | 109.5 | C20—C21—H21B | 109.4 |
H6A—C6—H6C | 109.5 | Cl1—C21—H21B | 109.4 |
H6B—C6—H6C | 109.5 | H21A—C21—H21B | 108.0 |
N1—C7—C8 | 108.81 (18) | N3—C22—C23 | 113.8 (2) |
N1—C7—C6 | 123.2 (2) | N3—C22—H22A | 108.8 |
C8—C7—C6 | 128.0 (2) | C23—C22—H22A | 108.8 |
C9—C8—C7 | 109.43 (18) | N3—C22—H22B | 108.8 |
C9—C8—H8 | 125.3 | C23—C22—H22B | 108.8 |
C7—C8—H8 | 125.3 | H22A—C22—H22B | 107.7 |
C8—C9—C11 | 105.54 (17) | C22—C23—Cl2 | 112.9 (2) |
C8—C9—C10 | 124.60 (19) | C22—C23—H23A | 109.0 |
C11—C9—C10 | 129.86 (19) | Cl2—C23—H23A | 109.0 |
C9—C10—H10A | 109.5 | C22—C23—H23B | 109.0 |
C9—C10—H10B | 109.5 | Cl2—C23—H23B | 109.0 |
H10A—C10—H10B | 109.5 | H23A—C23—H23B | 107.8 |
C7—N1—B1—F2 | 64.4 (2) | N1—C11—C12—C14 | −177.88 (14) |
C11—N1—B1—F2 | −119.52 (19) | C9—C11—C12—C14 | −0.7 (3) |
C7—N1—B1—F1 | −56.7 (2) | C4—N2—C13—C12 | −179.44 (16) |
C11—N1—B1—F1 | 119.42 (18) | B1—N2—C13—C12 | 4.9 (3) |
C7—N1—B1—N2 | −175.60 (16) | C4—N2—C13—C2 | 1.3 (2) |
C11—N1—B1—N2 | 0.5 (2) | B1—N2—C13—C2 | −174.41 (17) |
C4—N2—B1—F2 | −58.5 (3) | C11—C12—C13—N2 | −2.8 (2) |
C13—N2—B1—F2 | 116.38 (19) | C14—C12—C13—N2 | 175.01 (15) |
C4—N2—B1—F1 | 62.7 (3) | C11—C12—C13—C2 | 176.29 (18) |
C13—N2—B1—F1 | −122.37 (19) | C14—C12—C13—C2 | −5.9 (3) |
C4—N2—B1—N1 | −178.40 (17) | C3—C2—C13—N2 | −1.4 (2) |
C13—N2—B1—N1 | −3.5 (2) | C1—C2—C13—N2 | 174.43 (19) |
C13—C2—C3—C4 | 1.1 (2) | C3—C2—C13—C12 | 179.38 (18) |
C1—C2—C3—C4 | −175.0 (2) | C1—C2—C13—C12 | −4.8 (3) |
C13—N2—C4—C3 | −0.6 (2) | C11—C12—C14—C15 | −76.0 (2) |
B1—N2—C4—C3 | 175.05 (18) | C13—C12—C14—C15 | 106.2 (2) |
C13—N2—C4—C5 | 178.77 (19) | C11—C12—C14—C19 | 104.8 (2) |
B1—N2—C4—C5 | −5.6 (3) | C13—C12—C14—C19 | −73.0 (2) |
C2—C3—C4—N2 | −0.3 (2) | C19—C14—C15—C16 | −0.8 (3) |
C2—C3—C4—C5 | −179.7 (2) | C12—C14—C15—C16 | 180.0 (2) |
C11—N1—C7—C8 | 0.2 (2) | C14—C15—C16—C17 | 0.4 (4) |
B1—N1—C7—C8 | 176.89 (18) | C20—N3—C17—C16 | −166.0 (2) |
C11—N1—C7—C6 | −178.47 (18) | C22—N3—C17—C16 | 11.4 (3) |
B1—N1—C7—C6 | −1.8 (3) | C20—N3—C17—C18 | 14.5 (3) |
N1—C7—C8—C9 | −0.5 (2) | C22—N3—C17—C18 | −168.2 (2) |
C6—C7—C8—C9 | 178.2 (2) | C15—C16—C17—N3 | −179.2 (2) |
C7—C8—C9—C11 | 0.5 (2) | C15—C16—C17—C18 | 0.3 (3) |
C7—C8—C9—C10 | −179.54 (19) | N3—C17—C18—C19 | 178.95 (18) |
C7—N1—C11—C12 | 177.82 (16) | C16—C17—C18—C19 | −0.6 (3) |
B1—N1—C11—C12 | 1.2 (3) | C17—C18—C19—C14 | 0.1 (3) |
C7—N1—C11—C9 | 0.07 (19) | C15—C14—C19—C18 | 0.5 (3) |
B1—N1—C11—C9 | −176.60 (17) | C12—C14—C19—C18 | 179.77 (16) |
C8—C9—C11—C12 | −177.74 (18) | C17—N3—C20—C21 | 69.8 (3) |
C10—C9—C11—C12 | 2.3 (3) | C22—N3—C20—C21 | −107.6 (2) |
C8—C9—C11—N1 | −0.3 (2) | N3—C20—C21—Cl1 | 61.2 (2) |
C10—C9—C11—N1 | 179.69 (19) | C17—N3—C22—C23 | 69.9 (3) |
N1—C11—C12—C13 | −0.1 (2) | C20—N3—C22—C23 | −112.6 (3) |
C9—C11—C12—C13 | 177.05 (18) | N3—C22—C23—Cl2 | 67.2 (4) |
Experimental details
Crystal data | |
Chemical formula | C23H26BCl2F2N3 |
Mr | 464.18 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 298 |
a, b, c (Å) | 7.2673 (2), 12.3571 (2), 13.2963 (2) |
α, β, γ (°) | 92.650 (1), 101.089 (1), 90.205 (1) |
V (Å3) | 1170.40 (4) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.31 |
Crystal size (mm) | 0.55 × 0.35 × 0.35 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10164, 5337, 3776 |
Rint | 0.016 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.058, 0.178, 1.03 |
No. of reflections | 5337 |
No. of parameters | 299 |
No. of restraints | 13 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.36, −0.47 |
Computer programs: SMART (Bruker, 2005), SMART, SAINT (Bruker, 2005), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), SHELXTL (Bruker, 1997), SHELXTL.
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Boron-dipyrromethene (BODIPY) dyes are well known and have attracted much interest in the design of fluorescence labels (Stavis et al., 2005; Teske et al., 2006; Yee et al., 2005) and molecular fluorescence sensors (Peng et al., 2007). Detailed information on their molecular and crystal structures is necessary to understand their photophysical and photochemical properties (Yu et al., 2007). As part of our work on BODIPY compounds, we report here the synthesis and crystal structure (Fig.1) of the title compound.
As shown in Fig.1, the main skeleton of the molecule, which is formed from three fused heterocyclic rings, is close to planar with an r.m.s. deviation of 0.024 (9) Å. The maximum deviations from the mean plane for C4, C2 and N1 are 0.043 (3) Å, 0.043 (1) Å and 0.045 (0) Å, respectively. The two B—N bond lengths are nearly the same, indicating delocalization of the charge on them. Due to steric repulsion from the C1 and C10 methyl groups, the phenyl ring is twisted out of the plane of the BODIPY fused-ring system leading to a dihedral angle of 74.9 (8)° between phenyl and BODIPY groups. The two chlorine atoms are disordered with refined major:minor occupancies of 0.851 (8):0.149 (8) and 0.605 (19):0.395 (19) for Cl1/Cl1' and Cl2/Cl2' respectively.