Automatic annotation of protein residues in published papers

Firth, R.; Talo, F.; Venkatesan, A.; Mukhopadhyay, A.; McEntyre, J.; Velankar, S.; Morris, C.

doi:10.1107/S2053230X1901210X

Automatic annotation of protein residues in published papers

R. Firth, F. Talo, A. Venkatesan, A. Mukhopadhyay, J. McEntyre, S. Velankar and C. Morris

This work presents an annotation tool that automatically locates mentions of particular amino-acid residues in published papers and identifies the protein concerned. These matches can be provided in context or in a searchable format in order for researchers to better use the existing and future literature.

Keywords: NLP; natural language processing; named entity recognizer; residue.

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Automatic annotation of protein residues in published papers

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