In the title compound, also known as 4,10-dihydroxy-3,9-dimethoxypterocarpan monohydrate and melilotocarpan D monohydrate, C
17H
16O
6·H
2O, and the tetrahydropyran ring adopts a distorted envelope conformation and tetrahydrofuran ring displays an envelope conformation. The chroman moiety and benzofuran ring system are inclined at an angle of 45.81 (5)°. The molecular structure is stabilized by O—H
O intramolecular interactions. In the crystal structure, the O—H
O intermolecular hydrogen bonds link the molecules to form networks parallel to the
ac plane; these are interconnected along the
b axis by C—H
O interactions.
Supporting information
CCDC reference: 206801
Key indicators
- Single-crystal X-ray study
- T = 295 K
- Mean (C-C) = 0.003 Å
- R factor = 0.038
- wR factor = 0.095
- Data-to-parameter ratio = 8.3
checkCIF results
No syntax errors found
ADDSYM reports no extra symmetry
General Notes
REFLT_03
From the CIF: _diffrn_reflns_theta_max 30.49
From the CIF: _reflns_number_total 2412
Count of symmetry unique reflns 2533
Completeness (_total/calc) 95.22%
TEST3: Check Friedels for noncentro structure
Estimate of Friedel pairs measured 0
Fraction of Friedel pairs measured 0.000
Are heavy atom types Z>Si present no
Please check that the estimate of the number of Friedel pairs is
correct. If it is not, please give the correct count in the
_publ_section_exptl_refinement section of the submitted CIF.
Data collection: SMART (Siemens, 1996); cell refinement: SAINT (Siemens, 1996); data reduction: SHELXTL (Siemens, 1996) and SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 1990) and ORTEPIII (Burnett & Johnson, 1996); software used to prepare material for publication: PLATON and SHELXL97.
3,9-Dimethoxy-6a,11
a-dihydro-6
H-benzo[4,5]furo[3,2-
c]chromene-4,10-diol monohydrate
top
Crystal data top
C17H16O6·H2O | F(000) = 352 |
Mr = 334.31 | Dx = 1.391 Mg m−3 |
Monoclinic, P21 | Melting point = 428–430 K |
Hall symbol: P 2yb | Mo Kα radiation, λ = 0.71073 Å |
a = 6.9036 (2) Å | Cell parameters from 105 reflections |
b = 12.3647 (3) Å | θ = 2.2–30.5° |
c = 9.5054 (1) Å | µ = 0.11 mm−1 |
β = 100.454 (1)° | T = 295 K |
V = 797.92 (3) Å3 | Plate, colourless |
Z = 2 | 0.3 × 0.3 × 0.1 mm |
Data collection top
Bruker SMART CCD diffractometer | 2412 independent reflections |
Radiation source: fine-focus sealed tube | 2036 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.022 |
ω scans | θmax = 30.5°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −7→9 |
Tmin = 0.962, Tmax = 0.986 | k = −17→17 |
5907 measured reflections | l = −10→13 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.038 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.095 | All H-atom parameters refined |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0498P)2 + 0.0697P] where P = (Fo2 + 2Fc2)/3 |
2412 reflections | (Δ/σ)max = 0.001 |
289 parameters | Δρmax = 0.17 e Å−3 |
1 restraint | Δρmin = −0.18 e Å−3 |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
C1 | −0.2422 (3) | 0.5334 (2) | 0.3087 (2) | 0.0412 (5) | |
H1 | −0.251 (4) | 0.529 (3) | 0.409 (3) | 0.051 (8)* | |
C2 | −0.3715 (3) | 0.6006 (2) | 0.2186 (3) | 0.0408 (5) | |
H2 | −0.460 (5) | 0.639 (3) | 0.254 (3) | 0.050 (8)* | |
C3 | −0.3576 (3) | 0.60943 (17) | 0.0744 (2) | 0.0358 (4) | |
O3 | −0.4788 (3) | 0.66976 (16) | −0.02575 (18) | 0.0485 (4) | |
C3' | −0.6290 (6) | 0.7316 (4) | 0.0191 (4) | 0.0714 (10) | |
H3'A | −0.726 (6) | 0.687 (4) | 0.057 (5) | 0.087 (13)* | |
H3'B | −0.566 (5) | 0.784 (3) | 0.092 (4) | 0.072 (11)* | |
H3'C | −0.691 (7) | 0.772 (4) | −0.056 (5) | 0.096 (14)* | |
C4 | −0.2100 (3) | 0.55288 (17) | 0.0223 (2) | 0.0320 (4) | |
O4 | −0.1988 (2) | 0.56457 (15) | −0.11943 (16) | 0.0404 (4) | |
H4 | −0.094 (5) | 0.547 (3) | −0.133 (3) | 0.056 (9)* | |
C4A | −0.0812 (3) | 0.48569 (17) | 0.1137 (2) | 0.0323 (4) | |
O5 | 0.0530 (2) | 0.43102 (15) | 0.05049 (16) | 0.0442 (4) | |
C6 | 0.2204 (4) | 0.3904 (2) | 0.1495 (2) | 0.0433 (5) | |
H6A | 0.289 (4) | 0.344 (3) | 0.097 (3) | 0.055 (8)* | |
H6B | 0.300 (4) | 0.447 (2) | 0.186 (3) | 0.039 (7)* | |
C6A | 0.1607 (4) | 0.32531 (18) | 0.2700 (3) | 0.0412 (5) | |
H6C | 0.086 (5) | 0.261 (3) | 0.232 (3) | 0.053 (8)* | |
C6B | 0.3393 (4) | 0.30549 (18) | 0.3848 (2) | 0.0377 (5) | |
C7 | 0.4971 (4) | 0.23542 (19) | 0.3929 (3) | 0.0442 (5) | |
H7 | 0.502 (4) | 0.182 (3) | 0.317 (3) | 0.057 (9)* | |
C8 | 0.6550 (4) | 0.24471 (18) | 0.5077 (3) | 0.0403 (5) | |
H8 | 0.764 (4) | 0.199 (3) | 0.517 (3) | 0.047 (8)* | |
C9 | 0.6543 (3) | 0.32578 (17) | 0.6091 (2) | 0.0334 (4) | |
O9 | 0.8041 (2) | 0.34654 (15) | 0.72279 (18) | 0.0447 (4) | |
C9' | 0.9776 (4) | 0.2813 (3) | 0.7380 (3) | 0.0490 (6) | |
H9'A | 1.068 (5) | 0.307 (3) | 0.823 (3) | 0.058 (9)* | |
H9'B | 0.939 (5) | 0.207 (4) | 0.741 (4) | 0.072 (10)* | |
H9'C | 1.041 (5) | 0.290 (3) | 0.652 (4) | 0.068 (10)* | |
C10 | 0.4926 (3) | 0.39682 (17) | 0.6031 (2) | 0.0322 (4) | |
O10 | 0.4845 (3) | 0.47394 (14) | 0.70506 (18) | 0.0460 (4) | |
H10 | 0.599 (5) | 0.493 (3) | 0.754 (3) | 0.053 (8)* | |
C10A | 0.3382 (3) | 0.38446 (16) | 0.4890 (2) | 0.0328 (4) | |
O11 | 0.1733 (2) | 0.45040 (13) | 0.46465 (15) | 0.0381 (4) | |
C11A | 0.0320 (3) | 0.39450 (19) | 0.3505 (2) | 0.0363 (4) | |
H11A | −0.047 (4) | 0.350 (2) | 0.401 (3) | 0.035 (6)* | |
C11B | −0.0959 (3) | 0.47511 (17) | 0.2584 (2) | 0.0340 (4) | |
O1W | 0.1125 (4) | 0.5613 (2) | 0.7443 (3) | 0.0690 (6) | |
H1W | 0.220 (10) | 0.581 (6) | 0.791 (7) | 0.15 (3)* | |
H2W | 0.126 (13) | 0.521 (9) | 0.664 (11) | 0.25 (4)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
C1 | 0.0369 (10) | 0.0528 (14) | 0.0351 (11) | −0.0009 (10) | 0.0094 (8) | −0.0001 (9) |
C2 | 0.0347 (10) | 0.0483 (13) | 0.0410 (12) | 0.0056 (9) | 0.0111 (9) | −0.0046 (9) |
C3 | 0.0315 (9) | 0.0363 (10) | 0.0391 (11) | 0.0006 (8) | 0.0050 (8) | −0.0021 (8) |
O3 | 0.0452 (9) | 0.0562 (11) | 0.0439 (10) | 0.0203 (8) | 0.0077 (7) | 0.0038 (8) |
C3' | 0.0633 (19) | 0.084 (2) | 0.070 (2) | 0.040 (2) | 0.0191 (17) | 0.011 (2) |
C4 | 0.0306 (8) | 0.0338 (10) | 0.0303 (9) | −0.0026 (8) | 0.0022 (7) | −0.0053 (8) |
O4 | 0.0377 (7) | 0.0521 (9) | 0.0308 (7) | 0.0111 (8) | 0.0047 (6) | −0.0003 (7) |
C4A | 0.0290 (8) | 0.0334 (10) | 0.0336 (9) | −0.0008 (8) | 0.0032 (7) | −0.0050 (8) |
O5 | 0.0437 (8) | 0.0551 (10) | 0.0317 (7) | 0.0177 (8) | 0.0016 (6) | −0.0043 (7) |
C6 | 0.0393 (11) | 0.0524 (14) | 0.0360 (11) | 0.0136 (11) | 0.0012 (9) | −0.0058 (10) |
C6A | 0.0446 (12) | 0.0315 (10) | 0.0419 (12) | −0.0001 (9) | −0.0071 (9) | −0.0058 (9) |
C6B | 0.0420 (11) | 0.0310 (10) | 0.0369 (11) | 0.0008 (8) | −0.0017 (9) | −0.0011 (8) |
C7 | 0.0529 (14) | 0.0323 (10) | 0.0439 (12) | 0.0090 (10) | −0.0006 (10) | −0.0064 (9) |
C8 | 0.0439 (12) | 0.0324 (11) | 0.0433 (12) | 0.0096 (9) | 0.0048 (9) | 0.0021 (9) |
C9 | 0.0329 (9) | 0.0325 (10) | 0.0338 (10) | 0.0040 (8) | 0.0035 (7) | 0.0042 (8) |
O9 | 0.0374 (8) | 0.0474 (9) | 0.0445 (9) | 0.0127 (7) | −0.0051 (6) | −0.0040 (7) |
C9' | 0.0402 (12) | 0.0570 (16) | 0.0470 (14) | 0.0174 (12) | 0.0008 (10) | 0.0033 (12) |
C10 | 0.0344 (9) | 0.0304 (9) | 0.0315 (9) | 0.0039 (8) | 0.0056 (7) | 0.0000 (8) |
O10 | 0.0409 (8) | 0.0494 (10) | 0.0428 (8) | 0.0151 (7) | −0.0052 (7) | −0.0138 (7) |
C10A | 0.0327 (9) | 0.0330 (10) | 0.0319 (10) | 0.0031 (8) | 0.0035 (8) | 0.0024 (8) |
O11 | 0.0344 (7) | 0.0438 (9) | 0.0340 (7) | 0.0085 (7) | 0.0000 (6) | −0.0042 (6) |
C11A | 0.0329 (9) | 0.0393 (11) | 0.0342 (10) | −0.0049 (9) | −0.0008 (8) | 0.0043 (9) |
C11B | 0.0298 (9) | 0.0371 (11) | 0.0335 (9) | −0.0039 (8) | 0.0015 (7) | −0.0001 (8) |
O1W | 0.0549 (11) | 0.0826 (16) | 0.0757 (15) | 0.0063 (13) | 0.0286 (11) | −0.0065 (14) |
Geometric parameters (Å, º) top
C1—C2 | 1.394 (3) | C6A—H6C | 0.98 (3) |
C1—C11B | 1.394 (3) | C6B—C7 | 1.383 (3) |
C1—H1 | 0.97 (3) | C6B—C10A | 1.392 (3) |
C2—C3 | 1.396 (3) | C7—C8 | 1.400 (4) |
C2—H2 | 0.89 (3) | C7—H7 | 0.99 (3) |
C3—O3 | 1.369 (3) | C8—C9 | 1.391 (3) |
C3—C4 | 1.399 (3) | C8—H8 | 0.93 (3) |
O3—C3' | 1.415 (3) | C9—O9 | 1.378 (3) |
C3'—H3'A | 0.99 (5) | C9—C10 | 1.414 (3) |
C3'—H3'B | 0.99 (4) | O9—C9' | 1.429 (3) |
C3'—H3'C | 0.91 (5) | C9'—H9'A | 0.98 (3) |
C4—O4 | 1.371 (2) | C9'—H9'B | 0.96 (4) |
C4—C4A | 1.398 (3) | C9'—H9'C | 1.01 (4) |
O4—H4 | 0.79 (3) | C10—O10 | 1.368 (3) |
C4A—O5 | 1.370 (2) | C10—C10A | 1.384 (3) |
C4A—C11B | 1.404 (3) | O10—H10 | 0.87 (3) |
O5—C6 | 1.442 (3) | C10A—O11 | 1.385 (2) |
C6—C6A | 1.517 (4) | O11—C11A | 1.491 (3) |
C6—H6A | 0.95 (3) | C11A—C11B | 1.503 (3) |
C6—H6B | 0.92 (3) | C11A—H11A | 0.96 (3) |
C6A—C6B | 1.511 (3) | O1W—H1W | 0.83 (7) |
C6A—C11A | 1.534 (3) | O1W—H2W | 0.93 (11) |
| | | |
C2—C1—C11B | 121.4 (2) | C7—C6B—C6A | 132.3 (2) |
C2—C1—H1 | 119.4 (18) | C10A—C6B—C6A | 106.92 (19) |
C11B—C1—H1 | 119.2 (18) | C6B—C7—C8 | 119.1 (2) |
C1—C2—C3 | 119.9 (2) | C6B—C7—H7 | 121.0 (18) |
C1—C2—H2 | 120 (2) | C8—C7—H7 | 119.8 (18) |
C3—C2—H2 | 120 (2) | C9—C8—C7 | 119.9 (2) |
O3—C3—C2 | 125.69 (19) | C9—C8—H8 | 118.4 (18) |
O3—C3—C4 | 114.75 (18) | C7—C8—H8 | 121.6 (18) |
C2—C3—C4 | 119.55 (19) | O9—C9—C8 | 125.55 (19) |
C3—O3—C3' | 118.3 (2) | O9—C9—C10 | 113.01 (18) |
O3—C3'—H3'A | 113 (3) | C8—C9—C10 | 121.44 (19) |
O3—C3'—H3'B | 108 (2) | C9—O9—C9' | 118.07 (19) |
H3'A—C3'—H3'B | 111 (3) | O9—C9'—H9'A | 107.4 (19) |
O3—C3'—H3'C | 109 (3) | O9—C9'—H9'B | 108 (2) |
H3'A—C3'—H3'C | 110 (4) | H9'A—C9'—H9'B | 115 (3) |
H3'B—C3'—H3'C | 106 (4) | O9—C9'—H9'C | 110 (2) |
O4—C4—C4A | 122.05 (17) | H9'A—C9'—H9'C | 109 (3) |
O4—C4—C3 | 118.03 (18) | H9'B—C9'—H9'C | 107 (3) |
C4A—C4—C3 | 119.92 (17) | O10—C10—C10A | 120.49 (18) |
C4—O4—H4 | 110 (2) | O10—C10—C9 | 122.55 (18) |
O5—C4A—C4 | 115.14 (17) | C10A—C10—C9 | 116.95 (18) |
O5—C4A—C11B | 123.94 (18) | C10—O10—H10 | 115 (2) |
C4—C4A—C11B | 120.91 (18) | C10—C10A—O11 | 123.97 (18) |
C4A—O5—C6 | 114.29 (16) | C10—C10A—C6B | 122.16 (18) |
O5—C6—C6A | 112.5 (2) | O11—C10A—C6B | 113.84 (18) |
O5—C6—H6A | 106.5 (18) | C10A—O11—C11A | 104.96 (15) |
C6A—C6—H6A | 108.4 (19) | O11—C11A—C11B | 110.74 (18) |
O5—C6—H6B | 109.8 (17) | O11—C11A—C6A | 105.08 (16) |
C6A—C6—H6B | 110.2 (16) | C11B—C11A—C6A | 114.31 (18) |
H6A—C6—H6B | 109 (2) | O11—C11A—H11A | 104.9 (15) |
C6B—C6A—C6 | 109.4 (2) | C11B—C11A—H11A | 110.2 (15) |
C6B—C6A—C11A | 101.60 (17) | C6A—C11A—H11A | 111.1 (15) |
C6—C6A—C11A | 110.01 (19) | C1—C11B—C4A | 118.25 (19) |
C6B—C6A—H6C | 116.2 (19) | C1—C11B—C11A | 121.94 (19) |
C6—C6A—H6C | 110.5 (17) | C4A—C11B—C11A | 119.56 (19) |
C11A—C6A—H6C | 108.6 (18) | H1W—O1W—H2W | 112 (7) |
C7—C6B—C10A | 120.3 (2) | | |
| | | |
C11B—C1—C2—C3 | 0.8 (4) | C8—C9—C10—O10 | 176.9 (2) |
C1—C2—C3—O3 | 177.9 (2) | O9—C9—C10—C10A | 177.63 (19) |
C1—C2—C3—C4 | −1.8 (3) | C8—C9—C10—C10A | −2.2 (3) |
C2—C3—O3—C3' | 1.8 (4) | O10—C10—C10A—O11 | 3.6 (3) |
C4—C3—O3—C3' | −178.4 (3) | C9—C10—C10A—O11 | −177.20 (19) |
O3—C3—C4—O4 | 1.2 (3) | O10—C10—C10A—C6B | −178.7 (2) |
C2—C3—C4—O4 | −179.1 (2) | C9—C10—C10A—C6B | 0.5 (3) |
O3—C3—C4—C4A | −177.93 (19) | C7—C6B—C10A—C10 | 0.4 (3) |
C2—C3—C4—C4A | 1.8 (3) | C6A—C6B—C10A—C10 | −173.3 (2) |
O4—C4—C4A—O5 | −1.4 (3) | C7—C6B—C10A—O11 | 178.3 (2) |
C3—C4—C4A—O5 | 177.65 (19) | C6A—C6B—C10A—O11 | 4.6 (3) |
O4—C4—C4A—C11B | −179.96 (19) | C10—C10A—O11—C11A | −168.9 (2) |
C3—C4—C4A—C11B | −0.9 (3) | C6B—C10A—O11—C11A | 13.2 (2) |
C4—C4A—O5—C6 | 161.4 (2) | C10A—O11—C11A—C11B | −149.01 (18) |
C11B—C4A—O5—C6 | −20.1 (3) | C10A—O11—C11A—C6A | −25.1 (2) |
C4A—O5—C6—C6A | 51.5 (3) | C6B—C6A—C11A—O11 | 26.9 (2) |
O5—C6—C6A—C6B | −168.24 (19) | C6—C6A—C11A—O11 | −88.9 (2) |
O5—C6—C6A—C11A | −57.4 (3) | C6B—C6A—C11A—C11B | 148.56 (19) |
C6—C6A—C6B—C7 | −76.0 (3) | C6—C6A—C11A—C11B | 32.7 (3) |
C11A—C6A—C6B—C7 | 167.7 (3) | C2—C1—C11B—C4A | 0.1 (3) |
C6—C6A—C6B—C10A | 96.7 (2) | C2—C1—C11B—C11A | −174.1 (2) |
C11A—C6A—C6B—C10A | −19.5 (2) | O5—C4A—C11B—C1 | −178.5 (2) |
C10A—C6B—C7—C8 | 0.3 (4) | C4—C4A—C11B—C1 | −0.1 (3) |
C6A—C6B—C7—C8 | 172.2 (2) | O5—C4A—C11B—C11A | −4.1 (3) |
C6B—C7—C8—C9 | −2.0 (4) | C4—C4A—C11B—C11A | 174.31 (18) |
C7—C8—C9—O9 | −176.8 (2) | O11—C11A—C11B—C1 | −71.0 (2) |
C7—C8—C9—C10 | 3.0 (3) | C6A—C11A—C11B—C1 | 170.5 (2) |
C8—C9—O9—C9' | 1.2 (3) | O11—C11A—C11B—C4A | 114.8 (2) |
C10—C9—O9—C9' | −178.6 (2) | C6A—C11A—C11B—C4A | −3.6 (3) |
O9—C9—C10—O10 | −3.2 (3) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H4···O5 | 0.79 (3) | 2.34 (3) | 2.709 (2) | 110 (3) |
O10—H10···O9 | 0.87 (3) | 2.35 (3) | 2.691 (2) | 103 (2) |
O1W—H2W···O11 | 0.93 (11) | 2.16 (11) | 3.086 (3) | 171 (9) |
O1W—H1W···O10 | 0.83 (7) | 2.51 (7) | 2.872 (3) | 108 (6) |
O1W—H2W···O10 | 0.93 (9) | 2.50 (9) | 2.872 (2) | 104 (6) |
O10—H10···O4i | 0.87 (3) | 1.89 (3) | 2.738 (2) | 163 (3) |
O4—H4···O1Wii | 0.79 (3) | 2.01 (3) | 2.703 (3) | 147 (3) |
C7—H7···O10iii | 0.99 (3) | 2.58 (4) | 3.373 (3) | 138 (2) |
Symmetry codes: (i) x+1, y, z+1; (ii) x, y, z−1; (iii) −x+1, y−1/2, −z+1. |