Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807019356/ci2368sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807019356/ci2368Isup2.hkl |
CCDC reference: 647687
Compound (I) was prepared by the reaction of 6-amino-1,3-dimethylpyrimidine-2,4(1H,3H)-dione (2 mmol) and 4-nitrobenzaldehyde (2 mmol) with malononitrile (2 mmol) in water (10 ml) in the presence of triethylbenzylammonium chloride (0.15 g) at 363 K. Crystals of (I) suitable for X-ray diffraction were obtained by slow evaporation of an ethanol solution.
Amino H atoms were located in a difference map and refined freely. C-bound H atoms were placed in calculated positions, with C—H = 0.95 or 0.98 Å, and included in the final cycles of refinement using a riding model, with Uiso(H) = 1.2–1.5(methyl)Ueq(C).
The importance of uracil and its annelated derivatives is well recognized in synthetic (Sasaki et al., 1980; Bhuyan et al., 1999) as well as biological (Griengl et al., 1987; Pontikis et al., 1994) chemistry. With the development of clinically useful anticancer and antiviral drugs (Clercq et al., 1986; Jones et al., 1979), there has recently been remarkable interest in the synthetic manipulations of uracils (Hirota et al., 1981). Pyrido[2,3-d]pyrimidines represent a heterocyclic ring system of considerable interest because of several biological activities associated with this scaffold. Some analogues have been found to act as anticancer agents inhibiting dihydrofolate reductases or tyrosine kinases (Gangjee et al., 1999), while others are known antiviral agents (Nasr et al., 2002). We report here the crystal structure of the title compound, (I).
The pyrimidine ring adopts a flattened envelope conformation, with atom C6 deviating from the C1/C2/C7/N2/N3 plane by 0.144 (2) Å (Fig. 1). The dihedral angle between the C1—C5/N1 and C1/C2/C7/N2/N3 planes is 0.56 (7)°. The dihedral angle between the pyridine and benzene rings is 81.83 (3)°. The nitro group is coplanar with the attached benzene ring.
In the crystal structure, the molecules are linked to form a three-dimensional network (Fig. 2) by N—H···O, C—H···O and C—H···N type hydrogen bonds (Table 1).
For general background, see: Bhuyan et al. (1999); Clercq (1986); Gangjee et al. (1999); Griengl et al. (1987); Hirota et al. (1981); Jones et al. (1979); Nasr & Gineinah (2002); Pontikis & Monneret (1994); Sasaki et al. (1980).
Data collection: CrystalClear (Rigaku, 2000); cell refinement: CrystalClear; data reduction: CrystalStructure (Rigaku/MSC, 2003); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 1999); software used to prepare material for publication: SHELXL97.
Fig. 1. The molecular structure of (I), showing 40% probability displacement ellipsoids and the atom-numbering scheme. | |
Fig. 2. The crystal packing of (I). Hydrogen bonds are shown as dashed lines. |
C16H12N6O4 | F(000) = 728 |
Mr = 352.32 | Dx = 1.493 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71070 Å |
Hall symbol: -P 2yn | Cell parameters from 6117 reflections |
a = 9.6209 (9) Å | θ = 3.1–27.5° |
b = 11.7064 (12) Å | µ = 0.11 mm−1 |
c = 14.5493 (16) Å | T = 193 K |
β = 106.939 (3)° | Block, gold |
V = 1567.5 (3) Å3 | 0.60 × 0.40 × 0.32 mm |
Z = 4 |
Rigaku Mercury diffractometer | 3595 independent reflections |
Radiation source: fine-focus sealed tube | 3259 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.021 |
Detector resolution: 7.31 pixels mm-1 | θmax = 27.5°, θmin = 3.4° |
ω scans | h = −12→10 |
Absorption correction: multi-scan (Jacobson, 1998) | k = −15→14 |
Tmin = 0.936, Tmax = 0.965 | l = −18→18 |
17123 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.046 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.122 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.11 | w = 1/[σ2(Fo2) + (0.0637P)2 + 0.3577P] where P = (Fo2 + 2Fc2)/3 |
3595 reflections | (Δ/σ)max = 0.001 |
246 parameters | Δρmax = 0.24 e Å−3 |
0 restraints | Δρmin = −0.25 e Å−3 |
C16H12N6O4 | V = 1567.5 (3) Å3 |
Mr = 352.32 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 9.6209 (9) Å | µ = 0.11 mm−1 |
b = 11.7064 (12) Å | T = 193 K |
c = 14.5493 (16) Å | 0.60 × 0.40 × 0.32 mm |
β = 106.939 (3)° |
Rigaku Mercury diffractometer | 3595 independent reflections |
Absorption correction: multi-scan (Jacobson, 1998) | 3259 reflections with I > 2σ(I) |
Tmin = 0.936, Tmax = 0.965 | Rint = 0.021 |
17123 measured reflections |
R[F2 > 2σ(F2)] = 0.046 | 0 restraints |
wR(F2) = 0.122 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.11 | Δρmax = 0.24 e Å−3 |
3595 reflections | Δρmin = −0.25 e Å−3 |
246 parameters |
Experimental. 1H NMR (DMSO-d6, δ): 3.08 (3H, s, CH3), 3.51 (3H, s, CH3), 7.57 (2H, d, J = 8.8 Hz, ArH), 8.02 (2H, s, NH2), 8.32 (2H, d, J = 8.8 Hz, ArH). |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.40040 (11) | 0.58289 (9) | 0.61943 (7) | 0.0371 (3) | |
O2 | 0.27711 (11) | 0.53458 (9) | 0.89364 (8) | 0.0408 (3) | |
O3 | 0.40782 (12) | 0.88345 (11) | 0.25427 (7) | 0.0449 (3) | |
O4 | 0.58170 (12) | 0.76386 (10) | 0.26221 (7) | 0.0434 (3) | |
N1 | 0.62792 (11) | 0.80081 (9) | 0.90036 (7) | 0.0271 (2) | |
N2 | 0.32494 (12) | 0.57102 (9) | 0.75276 (8) | 0.0297 (3) | |
N3 | 0.45263 (12) | 0.66590 (10) | 0.89615 (7) | 0.0293 (3) | |
N4 | 0.86032 (13) | 0.96383 (11) | 0.68190 (8) | 0.0362 (3) | |
N5 | 0.81041 (13) | 0.93043 (10) | 0.91201 (8) | 0.0324 (3) | |
N6 | 0.50203 (12) | 0.81687 (10) | 0.29905 (8) | 0.0314 (3) | |
C1 | 0.53176 (13) | 0.72749 (11) | 0.84755 (9) | 0.0254 (3) | |
C2 | 0.50682 (13) | 0.70913 (11) | 0.74838 (9) | 0.0250 (3) | |
C3 | 0.58756 (13) | 0.77512 (10) | 0.70202 (8) | 0.0232 (3) | |
C4 | 0.69181 (13) | 0.84923 (10) | 0.75676 (8) | 0.0252 (3) | |
C5 | 0.71081 (13) | 0.85990 (11) | 0.85729 (8) | 0.0255 (3) | |
C6 | 0.40912 (14) | 0.61853 (11) | 0.70021 (9) | 0.0273 (3) | |
C7 | 0.34766 (14) | 0.58771 (12) | 0.85086 (10) | 0.0306 (3) | |
C8 | 0.56079 (13) | 0.77645 (10) | 0.59552 (8) | 0.0233 (3) | |
C9 | 0.44885 (14) | 0.84520 (11) | 0.54105 (9) | 0.0276 (3) | |
H9 | 0.3861 | 0.8832 | 0.5708 | 0.033* | |
C10 | 0.42892 (14) | 0.85827 (11) | 0.44323 (9) | 0.0279 (3) | |
H10 | 0.3536 | 0.9057 | 0.4055 | 0.033* | |
C11 | 0.52071 (14) | 0.80098 (11) | 0.40213 (8) | 0.0260 (3) | |
C12 | 0.63132 (14) | 0.73093 (11) | 0.45431 (9) | 0.0291 (3) | |
H12 | 0.6916 | 0.6912 | 0.4236 | 0.035* | |
C13 | 0.65246 (14) | 0.71979 (11) | 0.55214 (9) | 0.0277 (3) | |
H13 | 0.7293 | 0.6736 | 0.5896 | 0.033* | |
C14 | 0.78334 (13) | 0.91355 (11) | 0.71367 (9) | 0.0267 (3) | |
C15 | 0.21570 (17) | 0.48538 (13) | 0.70592 (12) | 0.0409 (4) | |
H15A | 0.1877 | 0.4965 | 0.6362 | 0.061* | |
H15B | 0.1299 | 0.4938 | 0.7288 | 0.061* | |
H15C | 0.2565 | 0.4087 | 0.7216 | 0.061* | |
C16 | 0.48811 (17) | 0.67789 (15) | 1.00141 (10) | 0.0394 (3) | |
H16A | 0.4223 | 0.6301 | 1.0251 | 0.059* | |
H16B | 0.4769 | 0.7579 | 1.0177 | 0.059* | |
H16C | 0.5887 | 0.6537 | 1.0313 | 0.059* | |
H5A | 0.8264 (18) | 0.9259 (15) | 0.9718 (13) | 0.038 (4)* | |
H5B | 0.877 (2) | 0.9721 (17) | 0.8866 (14) | 0.056 (5)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0469 (6) | 0.0400 (6) | 0.0246 (5) | −0.0109 (4) | 0.0107 (4) | −0.0044 (4) |
O2 | 0.0414 (6) | 0.0428 (6) | 0.0466 (6) | −0.0009 (5) | 0.0259 (5) | 0.0087 (5) |
O3 | 0.0447 (6) | 0.0592 (7) | 0.0266 (5) | 0.0033 (5) | 0.0037 (4) | 0.0130 (5) |
O4 | 0.0593 (7) | 0.0475 (6) | 0.0273 (5) | −0.0024 (5) | 0.0185 (5) | −0.0043 (4) |
N1 | 0.0302 (6) | 0.0302 (6) | 0.0209 (5) | 0.0041 (4) | 0.0072 (4) | 0.0007 (4) |
N2 | 0.0285 (6) | 0.0288 (6) | 0.0345 (6) | −0.0009 (4) | 0.0135 (5) | −0.0006 (4) |
N3 | 0.0314 (6) | 0.0353 (6) | 0.0244 (5) | 0.0033 (4) | 0.0132 (4) | 0.0039 (4) |
N4 | 0.0368 (6) | 0.0375 (7) | 0.0351 (6) | −0.0069 (5) | 0.0116 (5) | −0.0008 (5) |
N5 | 0.0383 (6) | 0.0349 (6) | 0.0211 (5) | −0.0030 (5) | 0.0040 (5) | −0.0015 (5) |
N6 | 0.0360 (6) | 0.0352 (6) | 0.0225 (5) | −0.0102 (5) | 0.0077 (4) | 0.0001 (4) |
C1 | 0.0266 (6) | 0.0273 (6) | 0.0241 (6) | 0.0063 (5) | 0.0100 (5) | 0.0037 (5) |
C2 | 0.0271 (6) | 0.0254 (6) | 0.0231 (6) | 0.0026 (5) | 0.0084 (5) | 0.0017 (5) |
C3 | 0.0251 (6) | 0.0236 (6) | 0.0208 (5) | 0.0047 (4) | 0.0064 (4) | 0.0017 (4) |
C4 | 0.0283 (6) | 0.0249 (6) | 0.0224 (6) | 0.0027 (5) | 0.0072 (5) | 0.0015 (5) |
C5 | 0.0274 (6) | 0.0254 (6) | 0.0226 (6) | 0.0062 (5) | 0.0054 (5) | 0.0012 (4) |
C6 | 0.0272 (6) | 0.0284 (6) | 0.0264 (6) | 0.0019 (5) | 0.0079 (5) | 0.0035 (5) |
C7 | 0.0288 (7) | 0.0318 (7) | 0.0358 (7) | 0.0060 (5) | 0.0164 (5) | 0.0048 (5) |
C8 | 0.0262 (6) | 0.0229 (6) | 0.0205 (6) | −0.0030 (4) | 0.0065 (4) | 0.0009 (4) |
C9 | 0.0287 (6) | 0.0297 (6) | 0.0252 (6) | 0.0025 (5) | 0.0091 (5) | 0.0011 (5) |
C10 | 0.0274 (6) | 0.0291 (6) | 0.0249 (6) | 0.0010 (5) | 0.0041 (5) | 0.0046 (5) |
C11 | 0.0294 (6) | 0.0286 (6) | 0.0194 (5) | −0.0078 (5) | 0.0060 (5) | 0.0007 (5) |
C12 | 0.0320 (7) | 0.0317 (7) | 0.0256 (6) | 0.0011 (5) | 0.0116 (5) | −0.0016 (5) |
C13 | 0.0297 (6) | 0.0282 (6) | 0.0248 (6) | 0.0041 (5) | 0.0074 (5) | 0.0025 (5) |
C14 | 0.0281 (6) | 0.0264 (6) | 0.0234 (6) | 0.0009 (5) | 0.0042 (5) | −0.0015 (5) |
C15 | 0.0391 (8) | 0.0370 (8) | 0.0514 (9) | −0.0099 (6) | 0.0205 (7) | −0.0088 (6) |
C16 | 0.0392 (8) | 0.0573 (9) | 0.0248 (6) | 0.0031 (7) | 0.0139 (6) | 0.0078 (6) |
O1—C6 | 1.2267 (16) | C3—C4 | 1.3883 (17) |
O2—C7 | 1.2169 (16) | C3—C8 | 1.4950 (16) |
O3—N6 | 1.2285 (16) | C4—C5 | 1.4257 (16) |
O4—N6 | 1.2245 (15) | C4—C14 | 1.4343 (17) |
N1—C1 | 1.3300 (17) | C8—C9 | 1.3922 (17) |
N1—C5 | 1.3411 (17) | C8—C13 | 1.3930 (17) |
N2—C6 | 1.3823 (16) | C9—C10 | 1.3881 (17) |
N2—C7 | 1.3933 (17) | C9—H9 | 0.95 |
N2—C15 | 1.4686 (18) | C10—C11 | 1.3766 (18) |
N3—C7 | 1.3799 (18) | C10—H10 | 0.95 |
N3—C1 | 1.3830 (16) | C11—C12 | 1.3822 (18) |
N3—C16 | 1.4755 (17) | C12—C13 | 1.3841 (17) |
N4—C14 | 1.1437 (17) | C12—H12 | 0.95 |
N5—C5 | 1.3376 (17) | C13—H13 | 0.95 |
N5—H5A | 0.84 (2) | C15—H15A | 0.98 |
N5—H5B | 0.96 (2) | C15—H15B | 0.98 |
N6—C11 | 1.4694 (15) | C15—H15C | 0.98 |
C1—C2 | 1.4085 (17) | C16—H16A | 0.98 |
C2—C3 | 1.4001 (17) | C16—H16B | 0.98 |
C2—C6 | 1.4546 (18) | C16—H16C | 0.98 |
C1—N1—C5 | 118.12 (10) | N3—C7—N2 | 117.17 (11) |
C6—N2—C7 | 124.61 (11) | C9—C8—C13 | 120.28 (11) |
C6—N2—C15 | 118.25 (11) | C9—C8—C3 | 117.85 (11) |
C7—N2—C15 | 116.65 (11) | C13—C8—C3 | 121.60 (11) |
C7—N3—C1 | 122.48 (11) | C10—C9—C8 | 120.02 (12) |
C7—N3—C16 | 118.33 (11) | C10—C9—H9 | 120.0 |
C1—N3—C16 | 119.06 (11) | C8—C9—H9 | 120.0 |
C5—N5—H5A | 117.4 (12) | C11—C10—C9 | 118.50 (11) |
C5—N5—H5B | 121.8 (12) | C11—C10—H10 | 120.7 |
H5A—N5—H5B | 119.3 (17) | C9—C10—H10 | 120.7 |
O4—N6—O3 | 123.27 (11) | C10—C11—C12 | 122.63 (11) |
O4—N6—C11 | 118.46 (11) | C10—C11—N6 | 118.58 (11) |
O3—N6—C11 | 118.27 (11) | C12—C11—N6 | 118.78 (11) |
N1—C1—N3 | 115.79 (11) | C11—C12—C13 | 118.66 (11) |
N1—C1—C2 | 124.92 (11) | C11—C12—H12 | 120.7 |
N3—C1—C2 | 119.30 (12) | C13—C12—H12 | 120.7 |
C3—C2—C1 | 117.16 (11) | C12—C13—C8 | 119.89 (11) |
C3—C2—C6 | 122.79 (11) | C12—C13—H13 | 120.1 |
C1—C2—C6 | 119.88 (11) | C8—C13—H13 | 120.1 |
C4—C3—C2 | 118.55 (11) | N4—C14—C4 | 177.66 (14) |
C4—C3—C8 | 117.74 (10) | N2—C15—H15A | 109.5 |
C2—C3—C8 | 123.56 (11) | N2—C15—H15B | 109.5 |
C3—C4—C5 | 119.90 (11) | H15A—C15—H15B | 109.5 |
C3—C4—C14 | 120.69 (11) | N2—C15—H15C | 109.5 |
C5—C4—C14 | 119.40 (11) | H15A—C15—H15C | 109.5 |
N5—C5—N1 | 117.43 (11) | H15B—C15—H15C | 109.5 |
N5—C5—C4 | 121.35 (12) | N3—C16—H16A | 109.5 |
N1—C5—C4 | 121.21 (11) | N3—C16—H16B | 109.5 |
O1—C6—N2 | 120.37 (12) | H16A—C16—H16B | 109.5 |
O1—C6—C2 | 124.32 (11) | N3—C16—H16C | 109.5 |
N2—C6—C2 | 115.30 (11) | H16A—C16—H16C | 109.5 |
O2—C7—N3 | 122.31 (13) | H16B—C16—H16C | 109.5 |
O2—C7—N2 | 120.52 (13) | ||
C5—N1—C1—N3 | 177.84 (10) | C1—C2—C6—O1 | −166.42 (12) |
C5—N1—C1—C2 | −1.95 (18) | C3—C2—C6—N2 | −172.61 (11) |
C7—N3—C1—N1 | 179.16 (11) | C1—C2—C6—N2 | 12.36 (17) |
C16—N3—C1—N1 | −5.18 (17) | C1—N3—C7—O2 | −179.17 (12) |
C7—N3—C1—C2 | −1.03 (18) | C16—N3—C7—O2 | 5.15 (19) |
C16—N3—C1—C2 | 174.63 (11) | C1—N3—C7—N2 | 1.01 (18) |
N1—C1—C2—C3 | −1.43 (18) | C16—N3—C7—N2 | −174.68 (11) |
N3—C1—C2—C3 | 178.78 (10) | C6—N2—C7—O2 | −173.21 (12) |
N1—C1—C2—C6 | 173.87 (11) | C15—N2—C7—O2 | −1.41 (19) |
N3—C1—C2—C6 | −5.92 (18) | C6—N2—C7—N3 | 6.62 (19) |
C1—C2—C3—C4 | 3.48 (17) | C15—N2—C7—N3 | 178.41 (11) |
C6—C2—C3—C4 | −171.68 (11) | C4—C3—C8—C9 | −94.22 (14) |
C1—C2—C3—C8 | −172.06 (11) | C2—C3—C8—C9 | 81.35 (15) |
C6—C2—C3—C8 | 12.79 (18) | C4—C3—C8—C13 | 79.81 (15) |
C2—C3—C4—C5 | −2.33 (17) | C2—C3—C8—C13 | −104.62 (15) |
C8—C3—C4—C5 | 173.46 (10) | C13—C8—C9—C10 | −0.53 (19) |
C2—C3—C4—C14 | 176.22 (11) | C3—C8—C9—C10 | 173.59 (11) |
C8—C3—C4—C14 | −7.98 (17) | C8—C9—C10—C11 | 0.76 (19) |
C1—N1—C5—N5 | −177.77 (11) | C9—C10—C11—C12 | 0.19 (19) |
C1—N1—C5—C4 | 3.20 (17) | C9—C10—C11—N6 | −178.55 (11) |
C3—C4—C5—N5 | 179.91 (11) | O4—N6—C11—C10 | −178.40 (11) |
C14—C4—C5—N5 | 1.34 (18) | O3—N6—C11—C10 | 2.14 (17) |
C3—C4—C5—N1 | −1.10 (18) | O4—N6—C11—C12 | 2.81 (18) |
C14—C4—C5—N1 | −179.67 (11) | O3—N6—C11—C12 | −176.64 (12) |
C7—N2—C6—O1 | 165.81 (12) | C10—C11—C12—C13 | −1.3 (2) |
C15—N2—C6—O1 | −5.87 (19) | N6—C11—C12—C13 | 177.39 (11) |
C7—N2—C6—C2 | −13.03 (18) | C11—C12—C13—C8 | 1.55 (19) |
C15—N2—C6—C2 | 175.30 (11) | C9—C8—C13—C12 | −0.64 (19) |
C3—C2—C6—O1 | 8.6 (2) | C3—C8—C13—C12 | −174.53 (11) |
D—H···A | D—H | H···A | D···A | D—H···A |
N5—H5A···O1i | 0.84 (2) | 2.06 (2) | 2.8912 (15) | 171 (2) |
N5—H5B···O1ii | 0.96 (2) | 2.53 (2) | 3.4463 (17) | 160 (2) |
C9—H9···O2iii | 0.95 | 2.52 | 3.4275 (16) | 160 |
C10—H10···N4iv | 0.95 | 2.58 | 3.5275 (18) | 174 |
C13—H13···O3i | 0.95 | 2.60 | 3.4547 (17) | 151 |
C15—H15C···O4v | 0.98 | 2.52 | 3.464 (2) | 162 |
Symmetry codes: (i) x+1/2, −y+3/2, z+1/2; (ii) −x+3/2, y+1/2, −z+3/2; (iii) −x+1/2, y+1/2, −z+3/2; (iv) −x+1, −y+2, −z+1; (v) −x+1, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C16H12N6O4 |
Mr | 352.32 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 193 |
a, b, c (Å) | 9.6209 (9), 11.7064 (12), 14.5493 (16) |
β (°) | 106.939 (3) |
V (Å3) | 1567.5 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.60 × 0.40 × 0.32 |
Data collection | |
Diffractometer | Rigaku Mercury |
Absorption correction | Multi-scan (Jacobson, 1998) |
Tmin, Tmax | 0.936, 0.965 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 17123, 3595, 3259 |
Rint | 0.021 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.046, 0.122, 1.11 |
No. of reflections | 3595 |
No. of parameters | 246 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.24, −0.25 |
Computer programs: CrystalClear (Rigaku, 2000), CrystalClear, CrystalStructure (Rigaku/MSC, 2003), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), SHELXTL (Bruker, 1999), SHELXL97.
D—H···A | D—H | H···A | D···A | D—H···A |
N5—H5A···O1i | 0.84 (2) | 2.06 (2) | 2.8912 (15) | 171 (2) |
N5—H5B···O1ii | 0.96 (2) | 2.53 (2) | 3.4463 (17) | 160 (2) |
C9—H9···O2iii | 0.95 | 2.52 | 3.4275 (16) | 160 |
C10—H10···N4iv | 0.95 | 2.58 | 3.5275 (18) | 174 |
C13—H13···O3i | 0.95 | 2.60 | 3.4547 (17) | 151 |
C15—H15C···O4v | 0.98 | 2.52 | 3.464 (2) | 162 |
Symmetry codes: (i) x+1/2, −y+3/2, z+1/2; (ii) −x+3/2, y+1/2, −z+3/2; (iii) −x+1/2, y+1/2, −z+3/2; (iv) −x+1, −y+2, −z+1; (v) −x+1, −y+1, −z+1. |
The importance of uracil and its annelated derivatives is well recognized in synthetic (Sasaki et al., 1980; Bhuyan et al., 1999) as well as biological (Griengl et al., 1987; Pontikis et al., 1994) chemistry. With the development of clinically useful anticancer and antiviral drugs (Clercq et al., 1986; Jones et al., 1979), there has recently been remarkable interest in the synthetic manipulations of uracils (Hirota et al., 1981). Pyrido[2,3-d]pyrimidines represent a heterocyclic ring system of considerable interest because of several biological activities associated with this scaffold. Some analogues have been found to act as anticancer agents inhibiting dihydrofolate reductases or tyrosine kinases (Gangjee et al., 1999), while others are known antiviral agents (Nasr et al., 2002). We report here the crystal structure of the title compound, (I).
The pyrimidine ring adopts a flattened envelope conformation, with atom C6 deviating from the C1/C2/C7/N2/N3 plane by 0.144 (2) Å (Fig. 1). The dihedral angle between the C1—C5/N1 and C1/C2/C7/N2/N3 planes is 0.56 (7)°. The dihedral angle between the pyridine and benzene rings is 81.83 (3)°. The nitro group is coplanar with the attached benzene ring.
In the crystal structure, the molecules are linked to form a three-dimensional network (Fig. 2) by N—H···O, C—H···O and C—H···N type hydrogen bonds (Table 1).