Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807018284/ci2360sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807018284/ci2360Isup2.hkl |
CCDC reference: 647617
The title compound was prepared according to the literature method of Lu et al. (2003). Crystals suitable for X-ray analysis were obtained by slow evaporation of a methanol-water solution at room temperature after several weeks.
H atoms of amino group were located in a difference map and refined freely. The remaining H atoms were placed in calculated positions, with C—H = 0.93–0.97 Å and O—H = 0.82–0.85 Å, and included in the final cycles of refinement using a riding model, with Uiso(H) = 1.2Ueq(C) and 1.5Ueq(O).
A number of hydroxypyrones and hydroxypyridinones are being assessed or considered as orally effective chelators for treatment iron or aluminium overload (Burgess, 1993; Clevette et al., 1990). In our continuing research on the hydroxypyridinone (Lu et al., 2003), we present here the crystal structure of the title compound, (I).
Bond distances (Table 1) in compound (I) agree with those observed for the N-benzyl analogues (Burgess, Fawcett, Russell & Zaisheng, 1998;
Burgess, Fawcett, Russell & Waltham, 1998). The dihedral angle between the benzene and pyridinone rings is 74.86 (7)°.
Molecules of compound (I) are linked by a pair of O2—H2···O1(1 - x, -y, -z) hydrogen bonds into a centrosymmetric dimer (Fig. 1). This type of dimeric structure is commonly found in anhydrous or hydrous 3-hydroxypyridin-4-one (Xiao et al., 1992; Burgess et al., 1993; Burgess, Fawcett, Russell & Zaisheng, 1998; Burgess, Fawcett, Russell & Waltham, 1998 and 3-hydroxypyran-4-one compounds (Brown et al., 1995). In the crystal structure, there is a water molecule associated with each pyridinone molecule, which are linked through N2—H2B···O3 hydrogen bonds (Fig. 1). The water molecule links the O1 and N2 atoms of adjacent pyridinones through O—H···O and O—H···O hydrogen bonds, with O3···O1(x, 1 + y, 1 + z) and O3···N2(-x, 2 - y, 1 - z) distances of 2.857 (2) and 2.987 (3) Å, respectively. In addition, the molecules are linked by weak C—H···O contacts of ca C···O 3.3 Å, as previously observed for this type of compounds (Burgess et al., 1996; Burgess, Fawcett, Russell & Zaisheng, 1998; Burgess, Fawcett, Russell & Waltham, 1998).
O—H···O hydrogen-bonded dimer formation is observed in 3-hydroxypyridin-4-one and 3-hydroxypyran-4-one compounds (Xiao et al., 1992; Burgess et al., 1993; Burgess, Fawcett, Russell & Zaisheng, 1998; Burgess, Fawcett, Russell & Waltham, 1998; Brown et al., 1995). For related literature, see: Burgess (1993); Burgess et al. (1996); Chan et al. (1992); Clevette & Orvig (1990); Lu et al. (2003).
Data collection: SMART (Bruker, 1998); cell refinement: SAINT (Bruker, 1999); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 1999); software used to prepare material for publication: SHELXTL.
C13H14N2O2·H2O | Z = 2 |
Mr = 248.28 | F(000) = 264 |
Triclinic, P1 | Dx = 1.331 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.8992 (14) Å | Cell parameters from 1277 reflections |
b = 8.0162 (15) Å | θ = 2.9–27.8° |
c = 11.4759 (19) Å | µ = 0.10 mm−1 |
α = 96.835 (2)° | T = 298 K |
β = 106.273 (2)° | Plate, yellow |
γ = 113.143 (3)° | 0.58 × 0.47 × 0.22 mm |
V = 619.43 (19) Å3 |
Bruker SMART CCD area-detector diffractometer | 2155 independent reflections |
Radiation source: fine-focus sealed tube | 1494 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.019 |
φ and ω scans | θmax = 25.0°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS: Sheldrick, 1996) | h = −9→9 |
Tmin = 0.947, Tmax = 0.979 | k = −9→6 |
3228 measured reflections | l = −12→13 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.043 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.125 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.058P)2 + 0.141P] where P = (Fo2 + 2Fc2)/3 |
2155 reflections | (Δ/σ)max = 0.001 |
171 parameters | Δρmax = 0.15 e Å−3 |
0 restraints | Δρmin = −0.19 e Å−3 |
C13H14N2O2·H2O | γ = 113.143 (3)° |
Mr = 248.28 | V = 619.43 (19) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.8992 (14) Å | Mo Kα radiation |
b = 8.0162 (15) Å | µ = 0.10 mm−1 |
c = 11.4759 (19) Å | T = 298 K |
α = 96.835 (2)° | 0.58 × 0.47 × 0.22 mm |
β = 106.273 (2)° |
Bruker SMART CCD area-detector diffractometer | 2155 independent reflections |
Absorption correction: multi-scan (SADABS: Sheldrick, 1996) | 1494 reflections with I > 2σ(I) |
Tmin = 0.947, Tmax = 0.979 | Rint = 0.019 |
3228 measured reflections |
R[F2 > 2σ(F2)] = 0.043 | 0 restraints |
wR(F2) = 0.125 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.15 e Å−3 |
2155 reflections | Δρmin = −0.19 e Å−3 |
171 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.2932 (2) | 0.4626 (2) | 0.13373 (15) | 0.0410 (4) | |
N2 | 0.2456 (4) | 1.0252 (4) | 0.4479 (2) | 0.0598 (6) | |
O1 | 0.3004 (2) | 0.02104 (19) | −0.07892 (12) | 0.0487 (4) | |
O2 | 0.6375 (2) | 0.2808 (2) | 0.11625 (14) | 0.0555 (4) | |
H2 | 0.6220 | 0.1884 | 0.0671 | 0.083* | |
O3 | 0.0972 (2) | 0.8939 (2) | 0.65506 (14) | 0.0663 (5) | |
H14 | 0.1591 | 0.9252 | 0.7339 | 0.100* | |
H15 | −0.0016 | 0.9169 | 0.6437 | 0.100* | |
C1 | 0.4659 (3) | 0.4445 (3) | 0.15894 (17) | 0.0376 (5) | |
C2 | 0.4666 (3) | 0.2958 (3) | 0.08741 (17) | 0.0392 (5) | |
C3 | 0.2953 (3) | 0.1587 (3) | −0.01476 (17) | 0.0386 (5) | |
C4 | 0.1269 (3) | 0.1900 (3) | −0.03696 (19) | 0.0465 (5) | |
H4 | 0.0120 | 0.1085 | −0.1040 | 0.056* | |
C5 | 0.1280 (3) | 0.3360 (3) | 0.0369 (2) | 0.0476 (5) | |
H5 | 0.0128 | 0.3498 | 0.0209 | 0.057* | |
C6 | 0.2799 (3) | 0.6082 (3) | 0.21302 (18) | 0.0390 (5) | |
C7 | 0.1834 (3) | 0.5618 (3) | 0.2967 (2) | 0.0485 (5) | |
H7 | 0.1250 | 0.4377 | 0.3004 | 0.058* | |
C8 | 0.1741 (3) | 0.6998 (3) | 0.3745 (2) | 0.0502 (5) | |
H8 | 0.1093 | 0.6679 | 0.4307 | 0.060* | |
C9 | 0.2597 (3) | 0.8856 (3) | 0.37046 (18) | 0.0444 (5) | |
C10 | 0.3514 (3) | 0.9284 (3) | 0.28396 (19) | 0.0465 (5) | |
H10 | 0.4068 | 1.0518 | 0.2784 | 0.056* | |
C11 | 0.3620 (3) | 0.7914 (3) | 0.20597 (18) | 0.0430 (5) | |
H11 | 0.4246 | 0.8226 | 0.1486 | 0.052* | |
C12 | 0.6474 (3) | 0.5818 (3) | 0.26744 (18) | 0.0449 (5) | |
H12A | 0.6434 | 0.7017 | 0.2829 | 0.054* | |
H12B | 0.7629 | 0.6010 | 0.2461 | 0.054* | |
C13 | 0.6645 (4) | 0.5139 (4) | 0.3857 (2) | 0.0671 (7) | |
H13A | 0.7824 | 0.6047 | 0.4528 | 0.101* | |
H13B | 0.6702 | 0.3961 | 0.3711 | 0.101* | |
H13C | 0.5519 | 0.4978 | 0.4083 | 0.101* | |
H2A | 0.346 (5) | 1.136 (5) | 0.464 (3) | 0.091 (11)* | |
H2B | 0.214 (4) | 0.983 (4) | 0.513 (2) | 0.071 (8)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0404 (10) | 0.0359 (9) | 0.0441 (9) | 0.0184 (8) | 0.0109 (8) | 0.0073 (7) |
N2 | 0.0670 (15) | 0.0683 (15) | 0.0520 (12) | 0.0413 (13) | 0.0205 (11) | 0.0054 (11) |
O1 | 0.0524 (9) | 0.0468 (9) | 0.0433 (8) | 0.0258 (7) | 0.0108 (7) | 0.0023 (7) |
O2 | 0.0439 (9) | 0.0527 (9) | 0.0588 (9) | 0.0254 (7) | 0.0058 (7) | −0.0070 (7) |
O3 | 0.0696 (11) | 0.0737 (11) | 0.0486 (9) | 0.0372 (9) | 0.0089 (8) | 0.0027 (8) |
C1 | 0.0385 (11) | 0.0363 (11) | 0.0388 (10) | 0.0174 (9) | 0.0128 (8) | 0.0121 (8) |
C2 | 0.0397 (11) | 0.0417 (11) | 0.0391 (10) | 0.0208 (9) | 0.0130 (9) | 0.0138 (9) |
C3 | 0.0457 (11) | 0.0361 (11) | 0.0327 (10) | 0.0177 (9) | 0.0126 (9) | 0.0095 (8) |
C4 | 0.0424 (12) | 0.0417 (12) | 0.0438 (11) | 0.0173 (9) | 0.0031 (9) | 0.0060 (9) |
C5 | 0.0397 (11) | 0.0442 (12) | 0.0537 (12) | 0.0218 (10) | 0.0067 (10) | 0.0081 (10) |
C6 | 0.0404 (11) | 0.0385 (11) | 0.0413 (10) | 0.0210 (9) | 0.0144 (9) | 0.0100 (9) |
C7 | 0.0477 (12) | 0.0453 (12) | 0.0602 (13) | 0.0230 (10) | 0.0234 (11) | 0.0223 (11) |
C8 | 0.0527 (13) | 0.0649 (15) | 0.0512 (12) | 0.0349 (12) | 0.0281 (10) | 0.0239 (11) |
C9 | 0.0427 (11) | 0.0537 (13) | 0.0405 (11) | 0.0309 (10) | 0.0080 (9) | 0.0086 (9) |
C10 | 0.0498 (12) | 0.0389 (11) | 0.0525 (12) | 0.0213 (10) | 0.0185 (10) | 0.0119 (10) |
C11 | 0.0472 (12) | 0.0416 (12) | 0.0436 (11) | 0.0201 (10) | 0.0199 (9) | 0.0139 (9) |
C12 | 0.0424 (11) | 0.0401 (11) | 0.0478 (12) | 0.0197 (9) | 0.0109 (9) | 0.0049 (9) |
C13 | 0.0633 (15) | 0.0707 (17) | 0.0441 (13) | 0.0200 (13) | 0.0051 (11) | 0.0052 (12) |
N1—C5 | 1.358 (2) | C5—H5 | 0.93 |
N1—C1 | 1.382 (2) | C6—C11 | 1.376 (3) |
N1—C6 | 1.449 (2) | C6—C7 | 1.384 (3) |
N2—C9 | 1.404 (3) | C7—C8 | 1.375 (3) |
N2—H2A | 0.88 (3) | C7—H7 | 0.93 |
N2—H2B | 0.92 (3) | C8—C9 | 1.386 (3) |
O1—C3 | 1.273 (2) | C8—H8 | 0.93 |
O2—C2 | 1.354 (2) | C9—C10 | 1.384 (3) |
O2—H2 | 0.82 | C10—C11 | 1.376 (3) |
O3—H14 | 0.85 | C10—H10 | 0.93 |
O3—H15 | 0.85 | C11—H11 | 0.93 |
C1—C2 | 1.367 (3) | C12—C13 | 1.512 (3) |
C1—C12 | 1.500 (3) | C12—H12A | 0.97 |
C2—C3 | 1.431 (3) | C12—H12B | 0.97 |
C3—C4 | 1.409 (3) | C13—H13A | 0.96 |
C4—C5 | 1.356 (3) | C13—H13B | 0.96 |
C4—H4 | 0.93 | C13—H13C | 0.96 |
C5—N1—C1 | 120.00 (17) | C8—C7—H7 | 120.1 |
C5—N1—C6 | 118.45 (16) | C6—C7—H7 | 120.1 |
C1—N1—C6 | 121.45 (16) | C7—C8—C9 | 121.07 (19) |
C9—N2—H2A | 111.3 (19) | C7—C8—H8 | 119.5 |
C9—N2—H2B | 109.7 (16) | C9—C8—H8 | 119.5 |
H2A—N2—H2B | 119 (3) | C10—C9—C8 | 118.19 (19) |
C2—O2—H2 | 109.5 | C10—C9—N2 | 120.9 (2) |
H14—O3—H15 | 107.1 | C8—C9—N2 | 120.8 (2) |
C2—C1—N1 | 119.21 (17) | C11—C10—C9 | 121.2 (2) |
C2—C1—C12 | 120.64 (17) | C11—C10—H10 | 119.4 |
N1—C1—C12 | 120.09 (17) | C9—C10—H10 | 119.4 |
O2—C2—C1 | 117.57 (17) | C6—C11—C10 | 119.89 (18) |
O2—C2—C3 | 119.97 (17) | C6—C11—H11 | 120.1 |
C1—C2—C3 | 122.46 (18) | C10—C11—H11 | 120.1 |
O1—C3—C4 | 124.17 (18) | C1—C12—C13 | 111.82 (17) |
O1—C3—C2 | 120.92 (18) | C1—C12—H12A | 109.3 |
C4—C3—C2 | 114.92 (17) | C13—C12—H12A | 109.3 |
C5—C4—C3 | 121.69 (19) | C1—C12—H12B | 109.3 |
C5—C4—H4 | 119.2 | C13—C12—H12B | 109.3 |
C3—C4—H4 | 119.2 | H12A—C12—H12B | 107.9 |
C4—C5—N1 | 121.67 (19) | C12—C13—H13A | 109.5 |
C4—C5—H5 | 119.2 | C12—C13—H13B | 109.5 |
N1—C5—H5 | 119.2 | H13A—C13—H13B | 109.5 |
C11—C6—C7 | 119.82 (19) | C12—C13—H13C | 109.5 |
C11—C6—N1 | 120.78 (17) | H13A—C13—H13C | 109.5 |
C7—C6—N1 | 119.41 (18) | H13B—C13—H13C | 109.5 |
C8—C7—C6 | 119.8 (2) | ||
C5—N1—C1—C2 | −1.6 (3) | C5—N1—C6—C11 | −107.4 (2) |
C6—N1—C1—C2 | 174.75 (17) | C1—N1—C6—C11 | 76.2 (2) |
C5—N1—C1—C12 | −178.74 (17) | C5—N1—C6—C7 | 72.6 (2) |
C6—N1—C1—C12 | −2.4 (3) | C1—N1—C6—C7 | −103.8 (2) |
N1—C1—C2—O2 | −178.87 (16) | C11—C6—C7—C8 | −1.5 (3) |
C12—C1—C2—O2 | −1.7 (3) | N1—C6—C7—C8 | 178.45 (18) |
N1—C1—C2—C3 | 1.1 (3) | C6—C7—C8—C9 | 0.1 (3) |
C12—C1—C2—C3 | 178.27 (17) | C7—C8—C9—C10 | 1.4 (3) |
O2—C2—C3—O1 | 0.6 (3) | C7—C8—C9—N2 | 178.5 (2) |
C1—C2—C3—O1 | −179.44 (18) | C8—C9—C10—C11 | −1.6 (3) |
O2—C2—C3—C4 | −179.23 (17) | N2—C9—C10—C11 | −178.6 (2) |
C1—C2—C3—C4 | 0.8 (3) | C7—C6—C11—C10 | 1.3 (3) |
O1—C3—C4—C5 | 177.90 (19) | N1—C6—C11—C10 | −178.65 (18) |
C2—C3—C4—C5 | −2.3 (3) | C9—C10—C11—C6 | 0.2 (3) |
C3—C4—C5—N1 | 2.0 (3) | C2—C1—C12—C13 | −84.4 (2) |
C1—N1—C5—C4 | 0.1 (3) | N1—C1—C12—C13 | 92.7 (2) |
C6—N1—C5—C4 | −176.39 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H15···N2i | 0.85 | 2.17 | 2.987 (3) | 160 |
O3—H14···O1ii | 0.85 | 2.01 | 2.857 (2) | 174 |
O2—H2···O1 | 0.82 | 2.34 | 2.7630 (19) | 113 |
O2—H2···O1iii | 0.82 | 2.01 | 2.662 (2) | 136 |
N2—H2B···O3 | 0.92 (3) | 2.15 (3) | 3.053 (3) | 170 (2) |
C11—H11···O1iv | 0.93 | 2.45 | 3.324 (3) | 157 |
Symmetry codes: (i) −x, −y+2, −z+1; (ii) x, y+1, z+1; (iii) −x+1, −y, −z; (iv) −x+1, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | C13H14N2O2·H2O |
Mr | 248.28 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 298 |
a, b, c (Å) | 7.8992 (14), 8.0162 (15), 11.4759 (19) |
α, β, γ (°) | 96.835 (2), 106.273 (2), 113.143 (3) |
V (Å3) | 619.43 (19) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.58 × 0.47 × 0.22 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector |
Absorption correction | Multi-scan (SADABS: Sheldrick, 1996) |
Tmin, Tmax | 0.947, 0.979 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3228, 2155, 1494 |
Rint | 0.019 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.043, 0.125, 1.03 |
No. of reflections | 2155 |
No. of parameters | 171 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.15, −0.19 |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 1999), SAINT, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), SHELXTL (Bruker, 1999), SHELXTL.
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H15···N2i | 0.85 | 2.17 | 2.987 (3) | 160 |
O3—H14···O1ii | 0.85 | 2.01 | 2.857 (2) | 174 |
O2—H2···O1 | 0.82 | 2.34 | 2.7630 (19) | 113 |
O2—H2···O1iii | 0.82 | 2.01 | 2.662 (2) | 136 |
N2—H2B···O3 | 0.92 (3) | 2.15 (3) | 3.053 (3) | 170 (2) |
C11—H11···O1iv | 0.93 | 2.45 | 3.324 (3) | 157 |
Symmetry codes: (i) −x, −y+2, −z+1; (ii) x, y+1, z+1; (iii) −x+1, −y, −z; (iv) −x+1, −y+1, −z. |
A number of hydroxypyrones and hydroxypyridinones are being assessed or considered as orally effective chelators for treatment iron or aluminium overload (Burgess, 1993; Clevette et al., 1990). In our continuing research on the hydroxypyridinone (Lu et al., 2003), we present here the crystal structure of the title compound, (I).
Bond distances (Table 1) in compound (I) agree with those observed for the N-benzyl analogues (Burgess, Fawcett, Russell & Zaisheng, 1998;
Burgess, Fawcett, Russell & Waltham, 1998). The dihedral angle between the benzene and pyridinone rings is 74.86 (7)°.
Molecules of compound (I) are linked by a pair of O2—H2···O1(1 - x, -y, -z) hydrogen bonds into a centrosymmetric dimer (Fig. 1). This type of dimeric structure is commonly found in anhydrous or hydrous 3-hydroxypyridin-4-one (Xiao et al., 1992; Burgess et al., 1993; Burgess, Fawcett, Russell & Zaisheng, 1998; Burgess, Fawcett, Russell & Waltham, 1998 and 3-hydroxypyran-4-one compounds (Brown et al., 1995). In the crystal structure, there is a water molecule associated with each pyridinone molecule, which are linked through N2—H2B···O3 hydrogen bonds (Fig. 1). The water molecule links the O1 and N2 atoms of adjacent pyridinones through O—H···O and O—H···O hydrogen bonds, with O3···O1(x, 1 + y, 1 + z) and O3···N2(-x, 2 - y, 1 - z) distances of 2.857 (2) and 2.987 (3) Å, respectively. In addition, the molecules are linked by weak C—H···O contacts of ca C···O 3.3 Å, as previously observed for this type of compounds (Burgess et al., 1996; Burgess, Fawcett, Russell & Zaisheng, 1998; Burgess, Fawcett, Russell & Waltham, 1998).