The squarate dianion in the crystal structure of the title compound, [Cd(C4O4)(C8H7N3)(H2O)2]n, links the heterocycle-chelated water-coordinated Cd atoms into a zigzag chain. The O atoms of the squarate dianions are aligned trans to each other in the octahedron surrounding the Cd atom. There are two independent square dianions and both lie on inversion centers.
Supporting information
CCDC reference: 269372
Key indicators
- Single-crystal X-ray study
- T = 295 K
- Mean (C-C) = 0.005 Å
- R factor = 0.022
- wR factor = 0.073
- Data-to-parameter ratio = 13.9
checkCIF/PLATON results
No syntax errors found
Alert level C
PLAT029_ALERT_3_C _diffrn_measured_fraction_theta_full Low ....... 0.97
PLAT152_ALERT_1_C Supplied and Calc Volume s.u. Inconsistent ..... ?
PLAT301_ALERT_3_C Main Residue Disorder ......................... 4.00 Perc.
PLAT720_ALERT_4_C Number of Unusual/Non-Standard Label(s) ........ 7
0 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
4 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
0 ALERT type 2 Indicator that the structure model may be wrong or deficient
2 ALERT type 3 Indicator that the structure quality may be low
1 ALERT type 4 Improvement, methodology, query or suggestion
Data collection: RAPID-AUTO (Rigaku, 1998); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPII (Johnson, 1976); software used to prepare material for publication: SHELXL97.
catena-Poly[[diaqua[3-(2-pyridyl)-1
H-pyrazole-
κN2]cadmium(II)]- µ-squarato-
κ2O:
O']
top
Crystal data top
[Cd(C4O4)(C8H7N3)(H2O)2] | Z = 2 |
Mr = 405.64 | F(000) = 400 |
Triclinic, P1 | Dx = 2.028 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 6.066 (1) Å | Cell parameters from 6304 reflections |
b = 8.643 (2) Å | θ = 3.2–27.5° |
c = 13.272 (3) Å | µ = 1.68 mm−1 |
α = 104.87 (3)° | T = 295 K |
β = 97.27 (3)° | Prism, yellow |
γ = 93.29 (3)° | 0.38 × 0.25 × 0.18 mm |
V = 664.2 (2) Å3 | |
Data collection top
Rigaki R-AXIS RAPID IP diffractometer | 2938 independent reflections |
Radiation source: fine-focus sealed tube | 2774 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.013 |
ω scans | θmax = 27.5°, θmin = 3.2° |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | h = −7→6 |
Tmin = 0.504, Tmax = 0.737 | k = −11→11 |
6388 measured reflections | l = −17→17 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.022 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.073 | H-atom parameters constrained |
S = 1.34 | w = 1/[σ2(Fo2) + (0.0287P)2 + 0.7719P] where P = (Fo2 + 2Fc2)/3 |
2938 reflections | (Δ/σ)max = 0.001 |
212 parameters | Δρmax = 0.45 e Å−3 |
0 restraints | Δρmin = −0.41 e Å−3 |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
Cd1 | 0.62460 (3) | 0.71725 (2) | 0.80709 (2) | 0.02507 (8) | |
O1w | 0.420 (2) | 0.8281 (9) | 0.9450 (7) | 0.033 (2) | 0.59 (3) |
O1w' | 0.525 (4) | 0.839 (1) | 0.970 (1) | 0.039 (3) | 0.41 (3) |
O2w | 0.4143 (4) | 0.4914 (3) | 0.7966 (2) | 0.0327 (5) | |
O1 | 0.9381 (4) | 0.6824 (3) | 0.9044 (2) | 0.0411 (6) | |
O2 | 0.6527 (4) | 0.3684 (3) | 0.9353 (2) | 0.0333 (5) | |
O3 | 0.7597 (3) | 0.5917 (3) | 0.6483 (2) | 0.0287 (4) | |
O4 | 0.6985 (4) | 0.6391 (3) | 0.4110 (2) | 0.0374 (6) | |
N1 | 0.7774 (4) | 0.9589 (3) | 0.7895 (2) | 0.0249 (5) | |
N2 | 0.3586 (4) | 0.8138 (3) | 0.7008 (2) | 0.0261 (5) | |
N3 | 0.1620 (4) | 0.7612 (3) | 0.6383 (2) | 0.0305 (6) | |
C1 | 0.9790 (5) | 1.0326 (4) | 0.8361 (2) | 0.0330 (7) | |
C2 | 1.0708 (5) | 1.1665 (4) | 0.8135 (3) | 0.0359 (7) | |
C3 | 0.9493 (6) | 1.2308 (4) | 0.7418 (3) | 0.0356 (7) | |
C4 | 0.7405 (5) | 1.1580 (4) | 0.6940 (2) | 0.0289 (6) | |
C5 | 0.6599 (5) | 1.0208 (3) | 0.7188 (2) | 0.0221 (5) | |
C6 | 0.4417 (5) | 0.9355 (3) | 0.6681 (2) | 0.0224 (5) | |
C7 | 0.2960 (5) | 0.9607 (4) | 0.5848 (3) | 0.0329 (7) | |
C8 | 0.1198 (5) | 0.8465 (4) | 0.5687 (3) | 0.0355 (7) | |
C9 | 0.9687 (5) | 0.5809 (4) | 0.9562 (2) | 0.0274 (6) | |
C10 | 0.8420 (5) | 0.4410 (4) | 0.9708 (2) | 0.0264 (6) | |
C11 | 0.6177 (5) | 0.5418 (3) | 0.5664 (2) | 0.0229 (5) | |
C12 | 0.5917 (5) | 0.5632 (3) | 0.4599 (2) | 0.0245 (6) | |
H1w1 | 0.2812 | 0.8127 | 0.9216 | 0.040* | 0.59 (3) |
H1w2 | 0.4473 | 0.7830 | 0.9945 | 0.040* | 0.59 (3) |
H1w3 | 0.4228 | 0.7789 | 0.9830 | 0.047* | 0.41 (3) |
H1w4 | 0.6382 | 0.8530 | 1.0169 | 0.047* | 0.41 (3) |
H2w1 | 0.3836 | 0.4372 | 0.7326 | 0.039* | |
H2w2 | 0.4852 | 0.4363 | 0.8322 | 0.039* | |
H3n | 0.0754 | 0.6831 | 0.6426 | 0.037* | |
H1 | 1.0601 | 0.9911 | 0.8858 | 0.040* | |
H2 | 1.2125 | 1.2130 | 0.8461 | 0.043* | |
H3 | 1.0073 | 1.3222 | 0.7259 | 0.043* | |
H4 | 0.6551 | 1.2000 | 0.6459 | 0.035* | |
H7 | 0.3145 | 1.0381 | 0.5484 | 0.040* | |
H8 | −0.0064 | 0.8313 | 0.5183 | 0.043* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Cd1 | 0.0263 (1) | 0.0251 (1) | 0.0258 (1) | −0.0007 (1) | 0.0001 (1) | 0.0128 (1) |
O1w | 0.038 (5) | 0.034 (3) | 0.032 (3) | 0.008 (3) | 0.008 (3) | 0.014 (2) |
O1w' | 0.042 (8) | 0.042 (4) | 0.033 (4) | −0.011 (4) | 0.011 (4) | 0.011 (3) |
O2w | 0.033 (1) | 0.033 (1) | 0.033 (1) | −0.006 (1) | −0.002 (1) | 0.015 (1) |
O1 | 0.0457 (1) | 0.036 (1) | 0.044 (1) | −0.005 (1) | −0.016 (1) | 0.026 (1) |
O2 | 0.0324 (1) | 0.038 (1) | 0.030 (1) | −0.004 (1) | −0.003 (1) | 0.016 (1) |
O3 | 0.0236 (1) | 0.038 (1) | 0.023 (1) | −0.005 (1) | −0.001 (1) | 0.007 (1) |
O4 | 0.0353 (1) | 0.047 (1) | 0.029 (1) | −0.019 (1) | −0.002 (1) | 0.017 (1) |
N1 | 0.0221 (1) | 0.025 (1) | 0.028 (1) | −0.001 (1) | −0.001 (1) | 0.009 (1) |
N2 | 0.0207 (1) | 0.029 (1) | 0.030 (1) | −0.002 (1) | −0.002 (1) | 0.011 (1) |
N3 | 0.0205 (1) | 0.032 (1) | 0.037 (1) | −0.006 (1) | 0.000 (1) | 0.007 (1) |
C1 | 0.0269 (2) | 0.039 (2) | 0.031 (2) | 0.000 (1) | −0.005 (1) | 0.008 (1) |
C2 | 0.0242 (2) | 0.038 (2) | 0.039 (2) | −0.010 (1) | 0.001 (1) | 0.002 (1) |
C3 | 0.0341 (2) | 0.032 (2) | 0.039 (2) | −0.010 (1) | 0.009 (1) | 0.007 (1) |
C4 | 0.0329 (2) | 0.025 (1) | 0.032 (2) | 0.001 (1) | 0.005 (1) | 0.012 (1) |
C5 | 0.0216 (1) | 0.022 (1) | 0.024 (1) | 0.002 (1) | 0.003 (1) | 0.007 (1) |
C6 | 0.0194 (1) | 0.023 (1) | 0.026 (1) | 0.001 (1) | 0.003 (1) | 0.008 (1) |
C7 | 0.0268 (2) | 0.039 (2) | 0.036 (2) | −0.002 (1) | −0.004 (1) | 0.018 (1) |
C8 | 0.0242 (2) | 0.047 (2) | 0.033 (2) | 0.001 (1) | −0.006 (1) | 0.011 (1) |
C9 | 0.034 (2) | 0.024 (1) | 0.023 (1) | 0.003 (1) | −0.003 (1) | 0.009 (1) |
C10 | 0.034 (2) | 0.025 (1) | 0.021 (1) | 0.002 (1) | 0.000 (1) | 0.009 (1) |
C11 | 0.0208 (1) | 0.024 (1) | 0.023 (1) | −0.002 (1) | 0.002 (1) | 0.006 (1) |
C12 | 0.023 (1) | 0.025 (1) | 0.024 (1) | −0.003 (1) | 0.001 (1) | 0.006 (1) |
Geometric parameters (Å, º) top
Cd1—O1 | 2.240 (2) | C6—C7 | 1.396 (4) |
Cd1—O3 | 2.378 (2) | C7—C8 | 1.369 (5) |
Cd1—O1w | 2.371 (6) | C9—C10i | 1.459 (4) |
Cd1—O1w' | 2.314 (8) | C9—C10 | 1.463 (4) |
Cd1—O2w | 2.233 (2) | C10—C9i | 1.459 (4) |
Cd1—N1 | 2.315 (3) | C11—C12 | 1.462 (4) |
Cd1—N2 | 2.339 (3) | C11—C12ii | 1.467 (4) |
O1—C9 | 1.255 (4) | C12—C11ii | 1.467 (4) |
O2—C10 | 1.250 (4) | O1w—H1w1 | 0.851 |
O3—C11 | 1.261 (3) | O1w—H1w2 | 0.85 |
O4—C12 | 1.244 (4) | O1w'—H1w3 | 0.85 |
N1—C5 | 1.343 (4) | O1w'—H1w4 | 0.85 |
N1—C1 | 1.342 (4) | O2w—H2w1 | 0.85 |
N2—C6 | 1.334 (4) | O2w—H2w2 | 0.85 |
N2—N3 | 1.346 (3) | N3—H3n | 0.85 |
N3—C8 | 1.332 (4) | C1—H1 | 0.93 |
C1—C2 | 1.373 (5) | C2—H2 | 0.93 |
C2—C3 | 1.378 (5) | C3—H3 | 0.93 |
C3—C4 | 1.380 (5) | C4—H4 | 0.93 |
C4—C5 | 1.388 (4) | C7—H7 | 0.93 |
C5—C6 | 1.469 (4) | C8—H8 | 0.93 |
| | | |
O1—Cd1—O3 | 91.4 (1) | C7—C6—C5 | 129.4 (3) |
O1—Cd1—O1w | 98.9 (3) | C8—C7—C6 | 104.8 (3) |
O1—Cd1—O1w' | 83.4 (6) | N3—C8—C7 | 107.6 (3) |
O1—Cd1—O2w | 100.9 (1) | O3—C11—C12 | 135.6 (3) |
O1—Cd1—N1 | 92.1 (1) | O1—C9—C10i | 132.4 (3) |
O1—Cd1—N2 | 164.2 (1) | O1—C9—C10 | 137.1 (3) |
O3—Cd1—O1w | 168.8 (4) | C10i—C9—C10 | 90.5 (2) |
O3—Cd1—O1w' | 174.8 (6) | O2—C10—C9i | 134.8 (3) |
O3—Cd1—O2w | 90.5 (1) | O2—C10—C9 | 135.8 (3) |
O3—Cd1—N1 | 87.1 (1) | C9i—C10—C9 | 89.5 (2) |
O3—Cd1—N2 | 86.1 (1) | O3—C11—C12ii | 134.0 (3) |
O1w—Cd1—O2w | 83.3 (3) | C12—C11—C12ii | 90.4 (2) |
O1w—Cd1—N1 | 96.8 (2) | O4—C12—C11 | 136.0 (3) |
O1w—Cd1—N2 | 85.1 (3) | O4—C12—C11ii | 134.5 (3) |
O1w'—Cd1—O2w | 91.3 (3) | C11—C12—C11ii | 89.6 (2) |
O1w'—Cd1—N1 | 92.3 (2) | Cd1—O1w—H1w1 | 109.5 |
O1w'—Cd1—N2 | 98.6 (6) | Cd1—O1w—H1w2 | 109.5 |
O2w—Cd1—N1 | 166.8 (1) | Cd1—O1w'—H1w3 | 109.5 |
O2w—Cd1—N2 | 94.7 (1) | Cd1—O1w'—H1w4 | 109.5 |
N1—Cd1—N2 | 72.3 (1) | H1w3—O1w'—H1w4 | 109.5 |
C9—O1—Cd1 | 128.6 (2) | Cd1—O2w—H2w1 | 109.5 |
C11—O3—Cd1 | 117.1 (2) | Cd1—O2w—H2w2 | 109.5 |
C5—N1—C1 | 118.2 (3) | H2w1—O2w—H2w2 | 109.5 |
C5—N1—Cd1 | 115.9 (2) | C8—N3—H3n | 124.1 |
C1—N1—Cd1 | 125.6 (2) | N2—N3—H3n | 124.1 |
C6—N2—N3 | 105.3 (2) | N1—C1—H1 | 118.6 |
C6—N2—Cd1 | 113.1 (2) | C2—C1—H1 | 118.6 |
N3—N2—Cd1 | 138.6 (2) | C1—C2—H2 | 120.6 |
C8—N3—N2 | 111.7 (3) | C3—C2—H2 | 120.6 |
N1—C1—C2 | 122.8 (3) | C4—C3—H3 | 120.4 |
C1—C2—C3 | 118.9 (3) | C2—C3—H3 | 120.4 |
C4—C3—C2 | 119.1 (3) | C3—C4—H4 | 120.5 |
C3—C4—C5 | 118.9 (3) | C5—C4—H4 | 120.5 |
N1—C5—C4 | 122.0 (3) | C8—C7—H7 | 127.6 |
N1—C5—C6 | 116.7 (2) | C6—C7—H7 | 127.6 |
C4—C5—C6 | 121.3 (3) | N3—C8—H8 | 126.2 |
N2—C6—C7 | 110.6 (3) | C7—C8—H8 | 126.2 |
N2—C6—C5 | 120.0 (2) | | |
| | | |
O2w—Cd1—O1—C9 | −12.9 (3) | Cd1—N2—N3—C8 | −158.2 (3) |
O1w'—Cd1—O1—C9 | 77.1 (4) | C5—N1—C1—C2 | −0.9 (5) |
N1—Cd1—O1—C9 | 169.2 (3) | Cd1—N1—C1—C2 | 172.6 (2) |
N2—Cd1—O1—C9 | 175.7 (3) | N1—C1—C2—C3 | 1.6 (5) |
O1w—Cd1—O1—C9 | 72.0 (4) | C1—C2—C3—C4 | −0.7 (5) |
O3—Cd1—O1—C9 | −103.6 (3) | C2—C3—C4—C5 | −0.6 (5) |
O2w—Cd1—O3—C11 | 60.8 (2) | C1—N1—C5—C4 | −0.5 (4) |
O1—Cd1—O3—C11 | 161.7 (2) | Cd1—N1—C5—C4 | −174.6 (2) |
N1—Cd1—O3—C11 | −106.3 (2) | C1—N1—C5—C6 | 179.0 (3) |
N2—Cd1—O3—C11 | −33.9 (2) | Cd1—N1—C5—C6 | 4.9 (3) |
O1w—Cd1—O3—C11 | 4.5 (8) | C3—C4—C5—N1 | 1.3 (5) |
O2w—Cd1—N1—C5 | −1.6 (5) | C3—C4—C5—C6 | −178.2 (3) |
O1—Cd1—N1—C5 | 169.2 (2) | N3—N2—C6—C7 | 0.4 (3) |
O1w'—Cd1—N1—C5 | −107.3 (7) | Cd1—N2—C6—C7 | 164.6 (2) |
N2—Cd1—N1—C5 | −9.0 (2) | N3—N2—C6—C5 | −179.1 (3) |
O1w—Cd1—N1—C5 | −91.6 (4) | Cd1—N2—C6—C5 | −14.9 (3) |
O3—Cd1—N1—C5 | 77.8 (2) | N1—C5—C6—N2 | 7.2 (4) |
O2w—Cd1—N1—C1 | −175.2 (3) | C4—C5—C6—N2 | −173.3 (3) |
O1—Cd1—N1—C1 | −4.5 (3) | N1—C5—C6—C7 | −172.3 (3) |
O1w'—Cd1—N1—C1 | 79.0 (7) | C4—C5—C6—C7 | 7.2 (5) |
N2—Cd1—N1—C1 | 177.4 (3) | N2—C6—C7—C8 | −0.3 (4) |
O1w—Cd1—N1—C1 | 94.8 (4) | C5—C6—C7—C8 | 179.2 (3) |
O3—Cd1—N1—C1 | −95.8 (3) | N2—N3—C8—C7 | 0.3 (4) |
O2w—Cd1—N2—C6 | −166.0 (2) | C6—C7—C8—N3 | 0.0 (4) |
O1—Cd1—N2—C6 | 5.6 (5) | Cd1—O3—C11—C12 | 127.2 (3) |
O1w'—Cd1—N2—C6 | 102.0 (4) | Cd1—O3—C11—C12ii | −52.8 (4) |
N1—Cd1—N2—C6 | 12.3 (2) | O1—C9—C10—O2 | 0.9 (7) |
O1w—Cd1—N2—C6 | 111.1 (4) | C10i—C9—C10—O2 | −179.3 (5) |
O3—Cd1—N2—C6 | −75.8 (2) | O1—C9—C10—C9i | −179.9 (5) |
O2w—Cd1—N2—N3 | −9.4 (3) | C10i—C9—C10—C9i | 0.0 |
O1—Cd1—N2—N3 | 162.2 (3) | Cd1—O1—C9—C10i | −173.1 (3) |
O1w'—Cd1—N2—N3 | −101.4 (4) | Cd1—O1—C9—C10 | 6.7 (6) |
N1—Cd1—N2—N3 | 168.9 (3) | O3—C11—C12—O4 | −0.7 (7) |
O1w—Cd1—N2—N3 | −92.3 (4) | C12ii—C11—C12—O4 | 179.3 (5) |
O3—Cd1—N2—N3 | 80.7 (3) | O3—C11—C12—C11ii | 180.0 (4) |
C6—N2—N3—C8 | −0.5 (4) | C12ii—C11—C12—C11ii | 0.0 |
Symmetry codes: (i) −x+2, −y+1, −z+2; (ii) −x+1, −y+1, −z+1. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O1w—H1w1···O1iii | 0.85 | 2.26 | 3.04 (2) | 152 |
O1w—H1w2···O2iv | 0.85 | 1.90 | 2.661 (6) | 148 |
O1w′—H1w3···O2iv | 0.85 | 1.94 | 2.692 (9) | 146 |
O2w—H2w2···O2 | 0.85 | 1.84 | 2.668 (3) | 165 |
O2w—H2w1···O4ii | 0.85 | 1.84 | 2.679 (3) | 168 |
N3—H3n···O3iii | 0.85 | 2.05 | 2.809 (3) | 149 |
Symmetry codes: (ii) −x+1, −y+1, −z+1; (iii) x−1, y, z; (iv) −x+1, −y+1, −z+2. |