Two new cocrystals of 1,4-diazabicyclo[2.2.2]octane (DABCO, C6H12N2) with 1,2-diiodoethene (1,2-C2H2I2) and 1,2-diiodoethane (1,2-C2H4I2) complete a series of halogen-bond-assisted cocrystals which started with DABCO·C2I2 [Perkins et al. (2012). CrystEngComm, 14, 3033–3038]. The structural and computational analysis of this series illustrate the correlation between the polarization of the I atom and the hybridization of the C atom bound to it. The formation of a rather stable halogen bond by the alkylic iodide of saturated 1,2-C2H4I2 was unusual and respective cocrystals are formed only in nonpolar solvents, while, in the polar medium of acetonitrile, a very intense reaction of DABCO quaternization takes place resulting in 1-(2-iodoethyl)-4-aza-1-azoniabicyclo[2.2.2]octane triiodide, C8H16IN2+·I3− or [N(CH2CH2)3N–CH2CH2I][I3].
Supporting information
CCDC references: 2191650; 2191649; 2191648
For all structures, data collection: APEX2 (Bruker, 2019); cell refinement: SAINT (Bruker, 2019); data reduction: SAINT (Bruker, 2019); program(s) used to solve structure: SHELXT2014 (Sheldrick, 2015a); program(s) used to refine structure: SHELXL2018 (Sheldrick, 2015b); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009).
1,2-Diiodoethene–1,4-diazabicyclo[2.2.2]octane (1/1) (2_dabco_c2h2i2)
top
Crystal data top
C2H2I2·C6H12N2 | F(000) = 728 |
Mr = 392.01 | Dx = 2.306 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 6.6793 (3) Å | Cell parameters from 9964 reflections |
b = 17.5562 (8) Å | θ = 2.4–31.5° |
c = 9.9538 (4) Å | µ = 5.53 mm−1 |
β = 104.667 (1)° | T = 100 K |
V = 1129.18 (9) Å3 | Needle, colourless |
Z = 4 | 0.52 × 0.09 × 0.09 mm |
Data collection top
Bruker APEXII CCD diffractometer | 3836 reflections with I > 2σ(I) |
φ and ω scans | θmax = 31.5°, θmin = 2.3° |
Absorption correction: multi-scan (TWINABS; Bruker, 2012) | h = −9→9 |
Tmin = 0.451, Tmax = 0.746 | k = 0→25 |
4065 measured reflections | l = 0→14 |
4065 independent reflections | |
Refinement top
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.023 | w = 1/[σ2(Fo2) + (0.0204P)2 + 2.7249P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.053 | (Δ/σ)max = 0.001 |
S = 1.11 | Δρmax = 0.74 e Å−3 |
4065 reflections | Δρmin = −1.23 e Å−3 |
111 parameters | Extinction correction: SHELXL2018 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
0 restraints | Extinction coefficient: 0.00034 (10) |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refined as a 2-component twin. A Bruker SMART APEXII diffractometer equipped with a
graphite-monochromator and a Bruker D8 Venture diffractometer (Mo Kα
radiation (λ = 0.71070 Å) were used for the unit-cell determination and
intensity data collection for crystals of 2–4. The data were
collected by standard φ–ω scan techniques, and were reduced using
SAINT (Bruker, 2015). SADABS (Bruker, 2016) software was used
for scaling and absorption correction. The structures were solved by direct
methods and refined by full-matrix least-squares against F2 using
OLEX2 (Dolomanov et al., 2009) and SHELXTL (Sheldrick,
2015). Non-H atoms were refined with anisotropic displacement parameters. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
I1 | 0.70722 (3) | 0.35891 (2) | 0.54602 (2) | 0.01490 (5) | |
I2 | 0.29561 (3) | 0.39275 (2) | 0.90357 (2) | 0.01379 (5) | |
C1 | 0.5565 (5) | 0.34924 (18) | 0.7083 (3) | 0.0176 (5) | |
H1 | 0.578361 | 0.304524 | 0.763844 | 0.021* | |
C2 | 0.4337 (4) | 0.40248 (18) | 0.7356 (3) | 0.0151 (5) | |
H2 | 0.406521 | 0.446443 | 0.678251 | 0.018* | |
N1 | 0.9242 (4) | 0.37058 (13) | 0.3322 (3) | 0.0140 (4) | |
N2 | 1.1105 (4) | 0.37835 (13) | 0.1361 (3) | 0.0141 (4) | |
C3 | 0.7718 (4) | 0.37389 (17) | 0.1968 (3) | 0.0158 (5) | |
H3A | 0.681673 | 0.418973 | 0.193631 | 0.019* | |
H3B | 0.683475 | 0.327825 | 0.184313 | 0.019* | |
C4 | 0.8830 (4) | 0.37886 (18) | 0.0779 (3) | 0.0166 (5) | |
H4A | 0.841829 | 0.335084 | 0.014204 | 0.020* | |
H4B | 0.841296 | 0.426238 | 0.024170 | 0.020* | |
C5 | 1.0555 (5) | 0.43948 (17) | 0.3488 (3) | 0.0169 (5) | |
H5A | 1.158865 | 0.437933 | 0.439730 | 0.020* | |
H5B | 0.968710 | 0.485401 | 0.346564 | 0.020* | |
C6 | 1.1679 (5) | 0.44383 (17) | 0.2305 (3) | 0.0181 (5) | |
H6A | 1.129729 | 0.491751 | 0.177811 | 0.022* | |
H6B | 1.319450 | 0.444029 | 0.270728 | 0.022* | |
C7 | 1.0582 (5) | 0.30327 (17) | 0.3359 (3) | 0.0170 (5) | |
H7A | 0.973728 | 0.256323 | 0.326562 | 0.020* | |
H7B | 1.163191 | 0.301288 | 0.426068 | 0.020* | |
C8 | 1.1679 (5) | 0.30745 (17) | 0.2158 (3) | 0.0166 (5) | |
H8A | 1.319709 | 0.305743 | 0.254433 | 0.020* | |
H8B | 1.127132 | 0.263041 | 0.153573 | 0.020* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
I1 | 0.01604 (8) | 0.01710 (9) | 0.01331 (8) | 0.00030 (6) | 0.00698 (6) | −0.00011 (7) |
I2 | 0.01403 (8) | 0.01533 (8) | 0.01339 (8) | 0.00006 (6) | 0.00601 (6) | −0.00014 (7) |
C1 | 0.0193 (12) | 0.0197 (13) | 0.0158 (12) | 0.0008 (10) | 0.0084 (10) | 0.0023 (11) |
C2 | 0.0155 (11) | 0.0194 (12) | 0.0124 (12) | 0.0004 (10) | 0.0071 (9) | 0.0031 (10) |
N1 | 0.0156 (10) | 0.0157 (10) | 0.0122 (10) | 0.0015 (8) | 0.0063 (8) | 0.0004 (8) |
N2 | 0.0147 (10) | 0.0174 (11) | 0.0119 (10) | 0.0016 (8) | 0.0063 (8) | −0.0004 (8) |
C3 | 0.0126 (11) | 0.0201 (12) | 0.0149 (12) | −0.0004 (9) | 0.0042 (10) | 0.0005 (10) |
C4 | 0.0161 (12) | 0.0221 (13) | 0.0118 (12) | 0.0015 (10) | 0.0037 (10) | 0.0015 (10) |
C5 | 0.0201 (13) | 0.0166 (12) | 0.0154 (13) | −0.0011 (10) | 0.0066 (10) | −0.0038 (11) |
C6 | 0.0186 (13) | 0.0172 (12) | 0.0198 (14) | −0.0029 (10) | 0.0074 (11) | 0.0008 (11) |
C7 | 0.0204 (13) | 0.0168 (12) | 0.0153 (13) | 0.0031 (10) | 0.0070 (10) | 0.0048 (11) |
C8 | 0.0185 (12) | 0.0172 (12) | 0.0166 (13) | 0.0030 (10) | 0.0092 (10) | −0.0002 (11) |
Geometric parameters (Å, º) top
I1—C1 | 2.115 (3) | C3—C4 | 1.551 (4) |
I2—C2 | 2.111 (3) | C4—H4A | 0.9900 |
C1—H1 | 0.9500 | C4—H4B | 0.9900 |
C1—C2 | 1.317 (4) | C5—H5A | 0.9900 |
C2—H2 | 0.9500 | C5—H5B | 0.9900 |
N1—C3 | 1.470 (4) | C5—C6 | 1.550 (4) |
N1—C5 | 1.479 (4) | C6—H6A | 0.9900 |
N1—C7 | 1.477 (4) | C6—H6B | 0.9900 |
N2—C4 | 1.483 (4) | C7—H7A | 0.9900 |
N2—C6 | 1.473 (4) | C7—H7B | 0.9900 |
N2—C8 | 1.474 (4) | C7—C8 | 1.553 (4) |
C3—H3A | 0.9900 | C8—H8A | 0.9900 |
C3—H3B | 0.9900 | C8—H8B | 0.9900 |
| | | |
I1—C1—H1 | 118.6 | N1—C5—H5A | 109.7 |
C2—C1—I1 | 122.9 (2) | N1—C5—H5B | 109.7 |
C2—C1—H1 | 118.6 | N1—C5—C6 | 110.0 (2) |
I2—C2—H2 | 119.1 | H5A—C5—H5B | 108.2 |
C1—C2—I2 | 121.8 (2) | C6—C5—H5A | 109.7 |
C1—C2—H2 | 119.1 | C6—C5—H5B | 109.7 |
C3—N1—C5 | 108.9 (2) | N2—C6—C5 | 110.4 (2) |
C3—N1—C7 | 109.2 (2) | N2—C6—H6A | 109.6 |
C7—N1—C5 | 108.3 (2) | N2—C6—H6B | 109.6 |
C6—N2—C4 | 108.6 (2) | C5—C6—H6A | 109.6 |
C6—N2—C8 | 109.0 (2) | C5—C6—H6B | 109.6 |
C8—N2—C4 | 108.4 (2) | H6A—C6—H6B | 108.1 |
N1—C3—H3A | 109.6 | N1—C7—H7A | 109.6 |
N1—C3—H3B | 109.6 | N1—C7—H7B | 109.6 |
N1—C3—C4 | 110.3 (2) | N1—C7—C8 | 110.1 (2) |
H3A—C3—H3B | 108.1 | H7A—C7—H7B | 108.2 |
C4—C3—H3A | 109.6 | C8—C7—H7A | 109.6 |
C4—C3—H3B | 109.6 | C8—C7—H7B | 109.6 |
N2—C4—C3 | 110.1 (2) | N2—C8—C7 | 110.2 (2) |
N2—C4—H4A | 109.6 | N2—C8—H8A | 109.6 |
N2—C4—H4B | 109.6 | N2—C8—H8B | 109.6 |
C3—C4—H4A | 109.6 | C7—C8—H8A | 109.6 |
C3—C4—H4B | 109.6 | C7—C8—H8B | 109.6 |
H4A—C4—H4B | 108.2 | H8A—C8—H8B | 108.1 |
| | | |
I1—C1—C2—I2 | −177.47 (13) | C5—N1—C3—C4 | 58.9 (3) |
N1—C3—C4—N2 | 0.3 (3) | C5—N1—C7—C8 | −60.3 (3) |
N1—C5—C6—N2 | 0.2 (3) | C6—N2—C4—C3 | −59.2 (3) |
N1—C7—C8—N2 | 1.6 (3) | C6—N2—C8—C7 | 58.1 (3) |
C3—N1—C5—C6 | −59.4 (3) | C7—N1—C3—C4 | −59.1 (3) |
C3—N1—C7—C8 | 58.1 (3) | C7—N1—C5—C6 | 59.3 (3) |
C4—N2—C6—C5 | 58.8 (3) | C8—N2—C4—C3 | 59.1 (3) |
C4—N2—C8—C7 | −60.1 (3) | C8—N2—C6—C5 | −59.2 (3) |
1,2-Diiodoethane–1,4-diazabicyclo[2.2.2]octane (1/1) (3_dabco_c2h4i2)
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Crystal data top
C2H4I2·C6H12N2 | Z = 2 |
Mr = 394.03 | F(000) = 368 |
Triclinic, P1 | Dx = 2.247 Mg m−3 |
a = 6.3840 (4) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 8.9645 (6) Å | Cell parameters from 9010 reflections |
c = 10.5276 (7) Å | θ = 2.9–32.5° |
α = 92.007 (1)° | µ = 5.36 mm−1 |
β = 103.486 (1)° | T = 100 K |
γ = 95.254 (1)° | Plate, colourless |
V = 582.42 (7) Å3 | 0.32 × 0.24 × 0.06 mm |
Data collection top
Bruker APEXII CCD diffractometer | 2717 reflections with I > 2σ(I) |
φ and ω scans | θmax = 29.0°, θmin = 2.0° |
Absorption correction: multi-scan (TWINABS; Bruker, 2012) | h = −8→8 |
Tmin = 0.496, Tmax = 0.746 | k = −12→12 |
3098 measured reflections | l = 0→14 |
3098 independent reflections | |
Refinement top
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.021 | H-atom parameters constrained |
wR(F2) = 0.040 | w = 1/[σ2(Fo2) + (0.0072P)2 + 0.8348P] where P = (Fo2 + 2Fc2)/3 |
S = 1.10 | (Δ/σ)max = 0.001 |
3098 reflections | Δρmax = 0.57 e Å−3 |
110 parameters | Δρmin = −0.73 e Å−3 |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refined as a 2-component twin. A Bruker SMART APEXII diffractometer equipped with a
graphite-monochromator and a Bruker D8 Venture diffractometer (Mo Kα
radiation (λ = 0.71070 Å) were used for the unit-cell determination and
intensity data collection for crystals of 2–4. The data were
collected by standard φ–ω scan techniques, and were reduced using
SAINT (Bruker, 2015). SADABS (Bruker, 2016) software was used
for scaling and absorption correction. The structures were solved by direct
methods and refined by full-matrix least-squares against F2 using
OLEX2 (Dolomanov et al., 2009) and SHELXTL (Sheldrick,
2015). Non-H atoms were refined with anisotropic displacement parameters. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
I1 | 0.66942 (2) | 0.22256 (2) | 0.52953 (2) | 0.01293 (5) | |
I2 | 0.26129 (2) | 0.27742 (2) | 0.88578 (2) | 0.01309 (5) | |
C1 | 0.5424 (4) | 0.1951 (3) | 0.7033 (3) | 0.0177 (5) | |
H1A | 0.490300 | 0.088281 | 0.707388 | 0.021* | |
H1B | 0.659599 | 0.224074 | 0.782409 | 0.021* | |
C2 | 0.3599 (4) | 0.2898 (3) | 0.7011 (3) | 0.0150 (5) | |
H2A | 0.235791 | 0.253650 | 0.627647 | 0.018* | |
H2B | 0.407010 | 0.395210 | 0.687790 | 0.018* | |
N1 | 0.8810 (3) | 0.2474 (2) | 0.3114 (2) | 0.0132 (4) | |
N2 | 1.0949 (3) | 0.2596 (2) | 0.1321 (2) | 0.0143 (4) | |
C3 | 1.0083 (4) | 0.1184 (3) | 0.3145 (3) | 0.0162 (5) | |
H3A | 0.910404 | 0.024107 | 0.302845 | 0.019* | |
H3B | 1.112083 | 0.119480 | 0.400736 | 0.019* | |
C4 | 1.1334 (4) | 0.1237 (3) | 0.2051 (3) | 0.0160 (5) | |
H4A | 1.290241 | 0.123534 | 0.244154 | 0.019* | |
H4B | 1.085135 | 0.033514 | 0.144664 | 0.019* | |
C5 | 0.7328 (4) | 0.2460 (3) | 0.1810 (3) | 0.0181 (5) | |
H5A | 0.645103 | 0.331999 | 0.177422 | 0.022* | |
H5B | 0.632902 | 0.152533 | 0.165149 | 0.022* | |
C6 | 0.8611 (4) | 0.2560 (3) | 0.0739 (3) | 0.0178 (5) | |
H6A | 0.813236 | 0.168348 | 0.010560 | 0.021* | |
H6B | 0.831919 | 0.347908 | 0.026029 | 0.021* | |
C7 | 1.0311 (4) | 0.3857 (3) | 0.3306 (3) | 0.0166 (5) | |
H7A | 1.131156 | 0.389322 | 0.418279 | 0.020* | |
H7B | 0.947950 | 0.474083 | 0.326330 | 0.020* | |
C8 | 1.1627 (4) | 0.3916 (3) | 0.2248 (3) | 0.0172 (5) | |
H8A | 1.140034 | 0.484216 | 0.177157 | 0.021* | |
H8B | 1.318864 | 0.393925 | 0.266837 | 0.021* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
I1 | 0.01249 (8) | 0.01556 (8) | 0.01126 (9) | 0.00097 (6) | 0.00403 (6) | 0.00069 (6) |
I2 | 0.01261 (8) | 0.01584 (8) | 0.01139 (9) | 0.00152 (6) | 0.00401 (6) | 0.00030 (6) |
C1 | 0.0187 (13) | 0.0243 (14) | 0.0138 (13) | 0.0066 (11) | 0.0088 (10) | 0.0052 (11) |
C2 | 0.0160 (12) | 0.0171 (12) | 0.0134 (13) | 0.0025 (10) | 0.0059 (10) | 0.0036 (10) |
N1 | 0.0119 (10) | 0.0168 (10) | 0.0114 (11) | 0.0016 (8) | 0.0037 (8) | 0.0021 (8) |
N2 | 0.0113 (10) | 0.0192 (11) | 0.0130 (11) | 0.0027 (8) | 0.0036 (8) | 0.0022 (8) |
C3 | 0.0186 (13) | 0.0155 (12) | 0.0155 (13) | 0.0013 (10) | 0.0060 (10) | 0.0028 (10) |
C4 | 0.0172 (12) | 0.0137 (12) | 0.0194 (14) | 0.0055 (10) | 0.0070 (10) | 0.0030 (10) |
C5 | 0.0111 (11) | 0.0301 (15) | 0.0131 (13) | 0.0038 (10) | 0.0021 (10) | 0.0015 (11) |
C6 | 0.0144 (12) | 0.0278 (14) | 0.0114 (13) | 0.0026 (10) | 0.0033 (10) | 0.0018 (11) |
C7 | 0.0220 (13) | 0.0135 (11) | 0.0147 (13) | 0.0014 (10) | 0.0056 (11) | −0.0005 (10) |
C8 | 0.0163 (12) | 0.0140 (12) | 0.0219 (14) | −0.0008 (9) | 0.0063 (11) | 0.0021 (10) |
Geometric parameters (Å, º) top
I1—C1 | 2.179 (3) | C3—H3B | 0.9900 |
I2—C2 | 2.183 (3) | C3—C4 | 1.547 (4) |
C1—H1A | 0.9900 | C4—H4A | 0.9900 |
C1—H1B | 0.9900 | C4—H4B | 0.9900 |
C1—C2 | 1.500 (4) | C5—H5A | 0.9900 |
C2—H2A | 0.9900 | C5—H5B | 0.9900 |
C2—H2B | 0.9900 | C5—C6 | 1.541 (4) |
N1—C3 | 1.470 (3) | C6—H6A | 0.9900 |
N1—C5 | 1.473 (3) | C6—H6B | 0.9900 |
N1—C7 | 1.473 (3) | C7—H7A | 0.9900 |
N2—C4 | 1.473 (3) | C7—H7B | 0.9900 |
N2—C6 | 1.472 (3) | C7—C8 | 1.543 (4) |
N2—C8 | 1.473 (3) | C8—H8A | 0.9900 |
C3—H3A | 0.9900 | C8—H8B | 0.9900 |
| | | |
I1—C1—H1A | 109.5 | C3—C4—H4A | 109.6 |
I1—C1—H1B | 109.5 | C3—C4—H4B | 109.6 |
H1A—C1—H1B | 108.0 | H4A—C4—H4B | 108.1 |
C2—C1—I1 | 110.94 (18) | N1—C5—H5A | 109.5 |
C2—C1—H1A | 109.5 | N1—C5—H5B | 109.5 |
C2—C1—H1B | 109.5 | N1—C5—C6 | 110.6 (2) |
I2—C2—H2A | 109.7 | H5A—C5—H5B | 108.1 |
I2—C2—H2B | 109.7 | C6—C5—H5A | 109.5 |
C1—C2—I2 | 109.62 (17) | C6—C5—H5B | 109.5 |
C1—C2—H2A | 109.7 | N2—C6—C5 | 110.5 (2) |
C1—C2—H2B | 109.7 | N2—C6—H6A | 109.5 |
H2A—C2—H2B | 108.2 | N2—C6—H6B | 109.5 |
C3—N1—C5 | 108.5 (2) | C5—C6—H6A | 109.5 |
C3—N1—C7 | 108.3 (2) | C5—C6—H6B | 109.5 |
C7—N1—C5 | 108.2 (2) | H6A—C6—H6B | 108.1 |
C6—N2—C4 | 108.5 (2) | N1—C7—H7A | 109.5 |
C6—N2—C8 | 108.6 (2) | N1—C7—H7B | 109.5 |
C8—N2—C4 | 108.4 (2) | N1—C7—C8 | 110.7 (2) |
N1—C3—H3A | 109.5 | H7A—C7—H7B | 108.1 |
N1—C3—H3B | 109.5 | C8—C7—H7A | 109.5 |
N1—C3—C4 | 110.7 (2) | C8—C7—H7B | 109.5 |
H3A—C3—H3B | 108.1 | N2—C8—C7 | 110.3 (2) |
C4—C3—H3A | 109.5 | N2—C8—H8A | 109.6 |
C4—C3—H3B | 109.5 | N2—C8—H8B | 109.6 |
N2—C4—C3 | 110.2 (2) | C7—C8—H8A | 109.6 |
N2—C4—H4A | 109.6 | C7—C8—H8B | 109.6 |
N2—C4—H4B | 109.6 | H8A—C8—H8B | 108.1 |
| | | |
I1—C1—C2—I2 | −173.94 (11) | C5—N1—C3—C4 | 57.4 (3) |
N1—C3—C4—N2 | 2.0 (3) | C5—N1—C7—C8 | −59.8 (3) |
N1—C5—C6—N2 | 1.7 (3) | C6—N2—C4—C3 | −59.9 (3) |
N1—C7—C8—N2 | 2.0 (3) | C6—N2—C8—C7 | 57.6 (3) |
C3—N1—C5—C6 | −59.6 (3) | C7—N1—C3—C4 | −59.9 (3) |
C3—N1—C7—C8 | 57.6 (3) | C7—N1—C5—C6 | 57.7 (3) |
C4—N2—C6—C5 | 57.9 (3) | C8—N2—C4—C3 | 57.8 (3) |
C4—N2—C8—C7 | −60.1 (3) | C8—N2—C6—C5 | −59.7 (3) |
1-(2-Iodoethyl)-4-aza-1-azoniabicyclo[2.2.2]octane triiodide (4_ich2ch2-dabco_i3)
top
Crystal data top
C8H16IN2+·I3− | Dx = 2.859 Mg m−3 |
Mr = 647.83 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Cmc21 | Cell parameters from 9348 reflections |
a = 7.9725 (3) Å | θ = 2.5–30.5° |
b = 16.2887 (7) Å | µ = 8.26 mm−1 |
c = 11.5886 (5) Å | T = 100 K |
V = 1504.91 (11) Å3 | Prism, yellow |
Z = 4 | 0.3 × 0.1 × 0.1 mm |
F(000) = 1160 | |
Data collection top
Bruker APEXII CCD diffractometer | 2394 reflections with I > 2σ(I) |
φ and ω scans | Rint = 0.038 |
Absorption correction: multi-scan (SADABS; Bruker, 2016) | θmax = 30.5°, θmin = 2.5° |
Tmin = 0.423, Tmax = 0.746 | h = −11→11 |
12547 measured reflections | k = −23→23 |
2448 independent reflections | l = −16→16 |
Refinement top
Refinement on F2 | Hydrogen site location: mixed |
Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
R[F2 > 2σ(F2)] = 0.016 | w = 1/[σ2(Fo2) + (0.0049P)2 + 0.3668P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.033 | (Δ/σ)max < 0.001 |
S = 1.10 | Δρmax = 0.48 e Å−3 |
2448 reflections | Δρmin = −0.90 e Å−3 |
98 parameters | Absolute structure: Flack x determined using 1116 quotients [(I+)-(I-)]/[(I+)+(I-)]
(Parsons et al., 2013) |
1 restraint | Absolute structure parameter: −0.02 (2) |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. A Bruker SMART APEXII diffractometer equipped with a
graphite-monochromator and a Bruker D8 Venture diffractometer (Mo Kα
radiation (λ = 0.71070 Å) were used for the unit-cell determination and
intensity data collection for crystals of 2–4. The data were
collected by standard φ–ω scan techniques, and were reduced using
SAINT (Bruker, 2015). SADABS (Bruker, 2016) software was used
for scaling and absorption correction. The structures were solved by direct
methods and refined by full-matrix least-squares against F2 using
OLEX2 (Dolomanov et al., 2009) and SHELXTL (Sheldrick,
2015). Non-H atoms were refined with anisotropic displacement parameters. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
I1 | 0.500000 | 0.22877 (2) | 0.63277 (3) | 0.01330 (7) | |
I3 | 0.500000 | 0.13869 (2) | 0.10137 (3) | 0.01538 (7) | |
I4 | 0.500000 | 0.04244 (2) | −0.11083 (3) | 0.01852 (8) | |
I2 | 0.500000 | 0.24039 (2) | 0.31053 (3) | 0.01728 (8) | |
N2 | 0.500000 | 0.4858 (3) | 1.1106 (4) | 0.0128 (9) | |
C2 | 0.500000 | 0.3619 (3) | 0.8043 (5) | 0.0147 (10) | |
H2 | 0.602 (5) | 0.384 (3) | 0.760 (4) | 0.018* | |
C7 | 0.6533 (4) | 0.3830 (2) | 0.9909 (3) | 0.0127 (7) | |
H7A | 0.745 (5) | 0.394 (3) | 0.943 (4) | 0.015* | |
C3 | 0.500000 | 0.4962 (3) | 0.8967 (6) | 0.0161 (11) | |
H3 | 0.400 (5) | 0.506 (3) | 0.851 (4) | 0.019* | |
N1 | 0.500000 | 0.4040 (3) | 0.9204 (4) | 0.0126 (9) | |
C4 | 0.500000 | 0.5419 (3) | 1.0125 (5) | 0.0166 (11) | |
C8 | 0.6496 (5) | 0.4337 (2) | 1.1030 (3) | 0.0161 (7) | |
H8A | 0.652103 | 0.396060 | 1.170039 | 0.019* | |
H8B | 0.750999 | 0.468714 | 1.106616 | 0.019* | |
C1 | 0.500000 | 0.2683 (3) | 0.8090 (5) | 0.0145 (10) | |
H4 | 0.607 (5) | 0.578 (3) | 1.026 (4) | 0.017* | |
H1 | 0.400 (5) | 0.247 (3) | 0.850 (4) | 0.017* | |
H7B | 0.646 (6) | 0.327 (3) | 1.010 (4) | 0.025 (13)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
I1 | 0.01618 (15) | 0.01272 (15) | 0.01101 (14) | 0.000 | 0.000 | −0.00385 (13) |
I3 | 0.01358 (14) | 0.01467 (15) | 0.01790 (16) | 0.000 | 0.000 | 0.00405 (12) |
I4 | 0.01875 (17) | 0.01674 (18) | 0.02009 (17) | 0.000 | 0.000 | 0.00048 (14) |
I2 | 0.01749 (16) | 0.01924 (17) | 0.01510 (17) | 0.000 | 0.000 | 0.00315 (14) |
N2 | 0.019 (2) | 0.0118 (19) | 0.008 (2) | 0.000 | 0.000 | 0.0020 (16) |
C2 | 0.023 (3) | 0.011 (2) | 0.010 (2) | 0.000 | 0.000 | 0.000 (2) |
C7 | 0.0160 (16) | 0.0108 (15) | 0.0112 (17) | 0.0034 (13) | −0.0028 (13) | −0.0007 (13) |
C3 | 0.026 (3) | 0.010 (2) | 0.013 (3) | 0.000 | 0.000 | 0.001 (2) |
N1 | 0.018 (2) | 0.012 (2) | 0.0075 (19) | 0.000 | 0.000 | −0.0014 (17) |
C4 | 0.028 (3) | 0.010 (2) | 0.012 (2) | 0.000 | 0.000 | −0.0025 (19) |
C8 | 0.0199 (18) | 0.0164 (17) | 0.0120 (16) | −0.0009 (13) | −0.0034 (13) | −0.0024 (14) |
C1 | 0.018 (2) | 0.016 (2) | 0.009 (2) | 0.000 | 0.000 | −0.001 (2) |
Geometric parameters (Å, º) top
I1—C1 | 2.141 (6) | C7—C8 | 1.540 (5) |
I3—I4 | 2.9164 (5) | C7—H7B | 0.94 (5) |
I3—I2 | 2.9359 (6) | C3—H3 | 0.97 (4) |
N2—C4 | 1.457 (7) | C3—H3i | 0.97 (4) |
N2—C8i | 1.466 (5) | C3—N1 | 1.526 (7) |
N2—C8 | 1.466 (5) | C3—C4 | 1.535 (9) |
C2—H2 | 1.03 (4) | C4—H4 | 1.05 (5) |
C2—N1 | 1.510 (7) | C8—H8A | 0.9900 |
C2—C1 | 1.524 (7) | C8—H8B | 0.9900 |
C7—H7A | 0.94 (5) | C1—H1i | 0.99 (4) |
C7—N1 | 1.509 (4) | C1—H1 | 0.99 (4) |
| | | |
I4—I3—I2 | 178.171 (16) | C7i—N1—C2 | 112.3 (3) |
C4—N2—C8i | 108.4 (3) | C7—N1—C2 | 112.3 (3) |
C4—N2—C8 | 108.4 (3) | C7—N1—C7i | 108.1 (4) |
C8i—N2—C8 | 108.8 (4) | C7i—N1—C3 | 108.7 (3) |
N1—C2—H2 | 106 (3) | C7—N1—C3 | 108.7 (3) |
N1—C2—C1 | 115.0 (5) | N2—C4—C3 | 112.2 (4) |
C1—C2—H2 | 112 (3) | N2—C4—H4 | 104 (2) |
H7A—C7—H7B | 112 (4) | C3—C4—H4 | 114 (2) |
N1—C7—H7A | 105 (3) | N2—C8—C7 | 112.1 (3) |
N1—C7—C8 | 108.7 (3) | N2—C8—H8A | 109.2 |
N1—C7—H7B | 107 (3) | N2—C8—H8B | 109.2 |
C8—C7—H7A | 114 (3) | C7—C8—H8A | 109.2 |
C8—C7—H7B | 109 (3) | C7—C8—H8B | 109.2 |
H3—C3—H3i | 111 (6) | H8A—C8—H8B | 107.9 |
N1—C3—H3 | 105 (3) | I1—C1—H1 | 110 (3) |
N1—C3—H3i | 105 (3) | I1—C1—H1i | 110 (3) |
N1—C3—C4 | 108.6 (5) | C2—C1—I1 | 105.5 (4) |
C4—C3—H3i | 113 (3) | C2—C1—H1i | 112 (3) |
C4—C3—H3 | 113 (3) | C2—C1—H1 | 112 (3) |
C2—N1—C3 | 106.6 (4) | H1—C1—H1i | 107 (6) |
| | | |
N1—C2—C1—I1 | 180.000 (1) | C8—N2—C4—C3 | 59.0 (3) |
N1—C7—C8—N2 | 1.1 (4) | C8i—N2—C8—C7 | 57.8 (5) |
N1—C3—C4—N2 | 0.000 (2) | C8—C7—N1—C2 | 175.5 (3) |
C4—N2—C8—C7 | −59.9 (4) | C8—C7—N1—C7i | −60.0 (5) |
C4—C3—N1—C2 | 180.000 (2) | C8—C7—N1—C3 | 57.8 (4) |
C4—C3—N1—C7 | −58.7 (3) | C1—C2—N1—C7 | 61.0 (3) |
C4—C3—N1—C7i | 58.7 (3) | C1—C2—N1—C7i | −61.0 (3) |
C8i—N2—C4—C3 | −59.0 (3) | C1—C2—N1—C3 | 180.000 (2) |
Symmetry code: (i) −x+1, y, z. |
Maxima and minima of electrostatic potential in C2I2, C2H2I2 and
C2H4I2 (PBE0/def2-TZVP; see Section 4.5 for additional computational
details) top | I-atom σ-hole, Vs max (kcal mol-1) | I-atom p-belt (and C≡C/C═C bonds), Vs min (kcal mol-1) | H atoms, Vs max (kcal mol-1) |
C2I2 | 45.7 | -0.3 (C≡C -13.6 ) | n/a |
C2H2I2 | 30.6 | -5.18 (C═C -4.6) | 34.5 |
C2H4I2 | 23.7 | -7.4 -7.2 | 30.5 |
I···N distances, intermolecular energies and Vs max on I atom in 1-3 top | I···N distance (Å) | I···N distance normalized to the sum of I and N vdW radii* | I···N (kcal mol-1) (CE-B3LYP/DGDZVP) | I, Vs max (kcal mol-1) (PBE0/def2-TZVP) |
C(sp)—I···N** | 2.715 (3), 2.719 (4) | 73.5 | 10.49 10.51 | 45.7 |
C(sp2)—I···N | 2.86 (1), 2.88 (1) | 77.6 | 6.86 7.12 | 30.6 |
C(sp3)—I···N | 2.94 (3), 2.99 (2) | 80.1 | 5.43 5.64 | 23.7 |
Notes: (*) using revised vdW radii (Alvarez, 2013);
(**) structure reported by Perkins et al. (2012). |
Intermolecular interaction energies in [I3][DABCO-CH2I] pair top | Eele | Epol | Edisp | Erep | Etotal |
Enegy* (kcal mol-1) CE-B3LYP/DGDZVP | -38.9 | -2.4 | -1.5 | 8.6 | -39.0 |
Scale factors | 1.057 | 0.740 | 0.871 | 0.618 | |
Note: (*) benchmarked energy model (Mackenzie et al., 2017). |