The sponge Hamigera tarangaensis has yielded eight new compounds and we report here the structure of one of these compounds, hamigeran A, C20H25BrO5, or methyl 7-bromo-4β,6-dihydroxy-1β-isopropyl-3aα,8-dimethyl-5-oxo-1a,3a,4,5-tetrahydrocyclopenta[a]naphthalene-4-carboxylate, and the decomposition product of hamigeran D, C21H28BrNO4, namely 2-(8-bromo-2β,7-dimethyl-4-oxo-1,3α-benzoxazan-5-yl)-3-isopropylcyclopentylacetic acid.
Supporting information
CCDC references: 170194; 170195
The compounds were obtained from extracts of Hamigera taragaensis as previously
described (Wellington et al., 2000). Hamigarin D underwent a
spontaneous decomposition in CDCl3 solvent in the NMR tube yielding the
decomposition product. Crystals suitable for X-ray diffraction studies were
obtained from methanol.
H atoms were located geometrically and initally refined using a riding model. In
the final refinement the coordinates of H atoms involved in hydrogen bonding
were allowed to refine with their displacement parameters tied to the carrier
atom.
Final refinement allowed the fraction contribution of the inverted enantiomer
to vary (Flack, 1983), the absolute structure parameter quoted being the
refined value of this contribution. In both structures the contribution of the
inverted enantiomer is negligible.
For both compounds, data collection: SMART (Siemens, 1995); cell refinement: SMART; data reduction: SAINT (Siemens, 1995); program(s) used to solve structure: SHELXS97 (Sheldrick, 1990); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Siemens, 1994); software used to prepare material for publication: SHELXL97.
(I) 7-bromo-4
β,6-dihydro-1
β-isopropyl-4
α-methoxycarbonyl-3a
α,8-
dimethylcyclopenta[a-1a,3a,4,5-tetrahydronaphthalen-5-one]
top
Crystal data top
C20H25BrO5 | Dx = 1.472 Mg m−3 |
Mr = 425.31 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, P212121 | Cell parameters from 6757 reflections |
a = 7.0958 (13) Å | θ = 2–26° |
b = 16.050 (3) Å | µ = 2.17 mm−1 |
c = 16.856 (4) Å | T = 203 K |
V = 1919.7 (7) Å3 | Needle, yellow |
Z = 4 | 0.32 × 0.16 × 0.10 mm |
F(000) = 880 | |
Data collection top
Siemens SMART diffractometer | 3020 independent reflections |
Radiation source: fine-focus sealed tube | 2738 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.041 |
Area detector ω scans | θmax = 26.0°, θmin = 1.8° |
Absorption correction: multi-scan Blessing (1995) | h = −6→6 |
Tmin = 0.544, Tmax = 0.812 | k = 0→19 |
8269 measured reflections | l = 0→20 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.040 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.107 | Calculated w = 1/[σ2(Fo2) + (0.0495P)2 + 1.620P] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max = 0.003 |
3020 reflections | Δρmax = 0.38 e Å−3 |
239 parameters | Δρmin = −0.47 e Å−3 |
0 restraints | Absolute structure: Flack (1983) |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.000 (13) |
Crystal data top
C20H25BrO5 | V = 1919.7 (7) Å3 |
Mr = 425.31 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 7.0958 (13) Å | µ = 2.17 mm−1 |
b = 16.050 (3) Å | T = 203 K |
c = 16.856 (4) Å | 0.32 × 0.16 × 0.10 mm |
Data collection top
Siemens SMART diffractometer | 3020 independent reflections |
Absorption correction: multi-scan Blessing (1995) | 2738 reflections with I > 2σ(I) |
Tmin = 0.544, Tmax = 0.812 | Rint = 0.041 |
8269 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.040 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.107 | Δρmax = 0.38 e Å−3 |
S = 1.07 | Δρmin = −0.47 e Å−3 |
3020 reflections | Absolute structure: Flack (1983) |
239 parameters | Absolute structure parameter: 0.000 (13) |
0 restraints | |
Special details top
Experimental. The data collection nominally covered a hemisphere of reciprocal space, by a
combination of three sets of exposures; each set had a different ϕ angle for
the crystal and each exposure covered 0.3° in ω. Crystal decay was monitored
by repeating the initial frames at the end of data collection and analyzing
the duplicate reflections. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Br1 | 0.17413 (10) | 0.12957 (4) | 0.49179 (3) | 0.0873 (3) | |
O1 | 0.0612 (5) | −0.2713 (2) | 0.25439 (19) | 0.0661 (10) | |
H1 | −0.0136 | −0.3074 | 0.2387 | 0.099* | |
O2 | 0.2661 (6) | −0.1571 (2) | 0.3248 (2) | 0.0694 (11) | |
O3 | 0.3027 (5) | −0.0233 (2) | 0.4081 (2) | 0.0673 (10) | |
H3A | 0.335 (10) | −0.068 (4) | 0.378 (4) | 0.101* | |
O4 | −0.3056 (6) | −0.2094 (2) | 0.3777 (2) | 0.0784 (12) | |
O5 | −0.0482 (5) | −0.2816 (2) | 0.40302 (19) | 0.0649 (10) | |
C1 | 0.1220 (7) | −0.0049 (3) | 0.3868 (2) | 0.0472 (12) | |
C2 | 0.0338 (8) | 0.0645 (3) | 0.4183 (2) | 0.0515 (13) | |
C3 | −0.1486 (8) | 0.0843 (2) | 0.3992 (2) | 0.0462 (11) | |
C4 | −0.2463 (7) | 0.0330 (2) | 0.3462 (2) | 0.0402 (10) | |
H4A | −0.3722 | 0.0460 | 0.3339 | 0.048* | |
C4A | −0.1646 (6) | −0.0360 (2) | 0.31115 (19) | 0.0341 (9) | |
C5 | −0.2706 (6) | −0.0850 (2) | 0.2487 (2) | 0.0330 (9) | |
H5A | −0.3968 | −0.0998 | 0.2694 | 0.040* | |
C6 | −0.2935 (6) | −0.0378 (2) | 0.1681 (2) | 0.0368 (10) | |
H6A | −0.3774 | −0.0726 | 0.1349 | 0.044* | |
C7 | −0.0964 (7) | −0.0467 (3) | 0.1329 (2) | 0.0486 (11) | |
H7A | −0.0989 | −0.0374 | 0.0754 | 0.058* | |
H7B | −0.0095 | −0.0066 | 0.1570 | 0.058* | |
C8 | −0.0366 (7) | −0.1351 (3) | 0.1514 (2) | 0.0519 (12) | |
H8A | 0.0958 | −0.1366 | 0.1678 | 0.062* | |
H8B | −0.0520 | −0.1707 | 0.1047 | 0.062* | |
C9 | −0.1677 (7) | −0.1659 (2) | 0.2209 (2) | 0.0396 (9) | |
C10 | −0.0399 (7) | −0.2038 (2) | 0.2861 (2) | 0.0425 (10) | |
C11 | 0.0993 (7) | −0.1377 (3) | 0.3147 (2) | 0.0467 (11) | |
C11A | 0.0203 (7) | −0.0568 (3) | 0.3343 (2) | 0.0401 (10) | |
C12 | −0.3795 (7) | 0.0495 (2) | 0.1681 (2) | 0.0429 (11) | |
H12A | −0.3099 | 0.0845 | 0.2066 | 0.051* | |
C13 | −0.3655 (8) | 0.0897 (3) | 0.0862 (3) | 0.0624 (14) | |
H13A | −0.4208 | 0.1449 | 0.0878 | 0.094* | |
H13B | −0.4328 | 0.0558 | 0.0479 | 0.094* | |
H13C | −0.2342 | 0.0938 | 0.0708 | 0.094* | |
C14 | −0.5874 (8) | 0.0467 (3) | 0.1926 (3) | 0.0598 (13) | |
H14A | −0.5984 | 0.0213 | 0.2446 | 0.090* | |
H14B | −0.6580 | 0.0142 | 0.1543 | 0.090* | |
H14C | −0.6373 | 0.1030 | 0.1945 | 0.090* | |
C15 | −0.3108 (9) | −0.2304 (3) | 0.1928 (3) | 0.0589 (13) | |
H15A | −0.2453 | −0.2803 | 0.1758 | 0.088* | |
H15B | −0.3825 | −0.2078 | 0.1488 | 0.088* | |
H15C | −0.3956 | −0.2440 | 0.2360 | 0.088* | |
C16 | −0.2478 (9) | 0.1595 (3) | 0.4321 (3) | 0.0699 (16) | |
H16A | −0.3742 | 0.1625 | 0.4104 | 0.105* | |
H16B | −0.1786 | 0.2094 | 0.4177 | 0.105* | |
H16C | −0.2546 | 0.1552 | 0.4895 | 0.105* | |
C17 | −0.1532 (8) | −0.2308 (2) | 0.3603 (2) | 0.0423 (10) | |
C18 | −0.1335 (8) | −0.3129 (3) | 0.4761 (3) | 0.0671 (15) | |
H18A | −0.0456 | −0.3498 | 0.5027 | 0.101* | |
H18B | −0.2478 | −0.3433 | 0.4634 | 0.101* | |
H18C | −0.1638 | −0.2665 | 0.5106 | 0.101* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Br1 | 0.1108 (6) | 0.1028 (4) | 0.0483 (2) | −0.0569 (4) | −0.0195 (3) | −0.0002 (3) |
O1 | 0.088 (3) | 0.0558 (18) | 0.0547 (18) | 0.0325 (18) | 0.0157 (17) | 0.0008 (15) |
O2 | 0.038 (3) | 0.092 (3) | 0.078 (2) | 0.015 (2) | 0.0069 (17) | 0.0266 (19) |
O3 | 0.041 (3) | 0.101 (3) | 0.0596 (19) | −0.017 (2) | −0.0155 (17) | 0.0249 (18) |
O4 | 0.065 (3) | 0.103 (3) | 0.067 (2) | 0.032 (2) | 0.026 (2) | 0.0431 (19) |
O5 | 0.054 (2) | 0.087 (2) | 0.0540 (18) | 0.0143 (19) | 0.0068 (16) | 0.0330 (17) |
C1 | 0.033 (3) | 0.073 (3) | 0.0362 (19) | −0.018 (2) | −0.0047 (17) | 0.0193 (19) |
C2 | 0.066 (4) | 0.060 (3) | 0.0286 (18) | −0.028 (2) | −0.008 (2) | 0.0046 (17) |
C3 | 0.063 (4) | 0.048 (2) | 0.0274 (16) | −0.013 (2) | −0.001 (2) | 0.0023 (15) |
C4 | 0.035 (3) | 0.047 (2) | 0.0381 (19) | 0.002 (2) | 0.0006 (16) | −0.0007 (16) |
C4A | 0.030 (3) | 0.0406 (19) | 0.0314 (15) | −0.0031 (18) | 0.0000 (16) | 0.0055 (14) |
C5 | 0.030 (3) | 0.0357 (17) | 0.0330 (16) | −0.0013 (16) | 0.0012 (15) | 0.0010 (14) |
C6 | 0.036 (3) | 0.0387 (19) | 0.0354 (17) | −0.0042 (19) | −0.0061 (16) | 0.0038 (15) |
C7 | 0.048 (3) | 0.059 (3) | 0.038 (2) | 0.004 (2) | 0.0033 (19) | 0.0110 (19) |
C8 | 0.051 (3) | 0.071 (3) | 0.0339 (18) | 0.013 (3) | 0.0086 (18) | 0.002 (2) |
C9 | 0.047 (3) | 0.0394 (19) | 0.0322 (16) | 0.008 (2) | 0.0044 (18) | 0.0005 (14) |
C10 | 0.040 (3) | 0.049 (2) | 0.0387 (19) | 0.014 (2) | 0.0067 (17) | 0.0028 (17) |
C11 | 0.032 (3) | 0.068 (3) | 0.0398 (19) | 0.007 (2) | 0.0073 (17) | 0.019 (2) |
C11A | 0.034 (3) | 0.051 (2) | 0.0354 (19) | −0.003 (2) | 0.0009 (17) | 0.0109 (17) |
C12 | 0.044 (3) | 0.039 (2) | 0.046 (2) | −0.0029 (19) | −0.0098 (18) | 0.0038 (17) |
C13 | 0.073 (4) | 0.057 (3) | 0.058 (3) | −0.001 (3) | −0.008 (3) | 0.017 (2) |
C14 | 0.049 (4) | 0.058 (3) | 0.072 (3) | 0.010 (2) | −0.005 (2) | 0.010 (2) |
C15 | 0.083 (4) | 0.041 (2) | 0.053 (2) | 0.001 (3) | −0.009 (3) | −0.0059 (18) |
C16 | 0.101 (5) | 0.059 (3) | 0.049 (2) | −0.009 (3) | 0.008 (3) | −0.018 (2) |
C17 | 0.045 (3) | 0.042 (2) | 0.0395 (19) | 0.003 (2) | −0.001 (2) | 0.0037 (15) |
C18 | 0.071 (4) | 0.082 (3) | 0.049 (2) | −0.012 (3) | −0.003 (2) | 0.029 (2) |
Geometric parameters (Å, º) top
Br1—C2 | 1.902 (4) | C4A—C5 | 1.514 (5) |
O1—C10 | 1.404 (5) | C5—C9 | 1.562 (5) |
O2—C11 | 1.235 (5) | C5—C6 | 1.565 (5) |
O3—C1 | 1.364 (6) | C6—C7 | 1.526 (6) |
O4—C17 | 1.172 (6) | C6—C12 | 1.528 (5) |
O5—C17 | 1.318 (5) | C7—C8 | 1.513 (6) |
O5—C18 | 1.462 (5) | C8—C9 | 1.575 (6) |
C1—C2 | 1.384 (7) | C9—C15 | 1.525 (6) |
C1—C11A | 1.413 (6) | C9—C10 | 1.549 (5) |
C2—C3 | 1.371 (7) | C10—C11 | 1.527 (7) |
C3—C4 | 1.399 (6) | C10—C17 | 1.549 (6) |
C3—C16 | 1.504 (7) | C11—C11A | 1.453 (6) |
C4—C4A | 1.382 (5) | C12—C13 | 1.527 (6) |
C4A—C11A | 1.409 (6) | C12—C14 | 1.532 (7) |
| | | |
C17—O5—C18 | 116.0 (4) | C15—C9—C5 | 110.3 (4) |
O3—C1—C2 | 119.9 (4) | C10—C9—C5 | 112.8 (3) |
O3—C1—C11A | 121.2 (5) | C15—C9—C8 | 112.0 (3) |
C2—C1—C11A | 118.9 (4) | C10—C9—C8 | 107.7 (4) |
C3—C2—C1 | 121.5 (4) | C5—C9—C8 | 103.8 (3) |
C3—C2—Br1 | 121.3 (4) | O1—C10—C11 | 109.0 (4) |
C1—C2—Br1 | 117.1 (4) | O1—C10—C9 | 109.4 (3) |
C2—C3—C4 | 118.8 (4) | C11—C10—C9 | 109.3 (3) |
C2—C3—C16 | 122.8 (4) | O1—C10—C17 | 110.9 (3) |
C4—C3—C16 | 118.4 (5) | C11—C10—C17 | 106.0 (3) |
C4A—C4—C3 | 122.4 (4) | C9—C10—C17 | 112.2 (4) |
C4—C4A—C11A | 117.5 (4) | O2—C11—C11A | 124.3 (5) |
C4—C4A—C5 | 120.3 (4) | O2—C11—C10 | 119.2 (4) |
C11A—C4A—C5 | 122.1 (3) | C11A—C11—C10 | 116.3 (4) |
C4A—C5—C9 | 114.1 (3) | C4A—C11A—C1 | 120.6 (4) |
C4A—C5—C6 | 113.8 (3) | C4A—C11A—C11 | 120.6 (4) |
C9—C5—C6 | 101.0 (3) | C1—C11A—C11 | 118.2 (4) |
C7—C6—C12 | 116.9 (3) | C13—C12—C14 | 108.6 (4) |
C7—C6—C5 | 101.4 (3) | C13—C12—C6 | 111.1 (4) |
C12—C6—C5 | 119.0 (3) | C14—C12—C6 | 111.0 (4) |
C8—C7—C6 | 105.3 (3) | O4—C17—O5 | 124.5 (4) |
C7—C8—C9 | 106.4 (3) | O4—C17—C10 | 126.8 (4) |
C15—C9—C10 | 110.1 (3) | O5—C17—C10 | 108.7 (4) |
| | | |
C5—C6—C12—C13 | 172.3 (4) | C6—C5—C9—C8 | 34.9 (4) |
C9—C10—C17—O5 | 163.3 (3) | C4A—C5—C9—C10 | 28.7 (5) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3A···O2 | 0.92 (6) | 1.75 (6) | 2.580 (6) | 149 (7) |
(II) 8-bromo-5-(2'
α-carboxymethyl-5'
α-isopropyl-2'
β-methyl)-3-imono-
7-methyl-2,3-dihydrobenzopyran-4-one
top
Crystal data top
C21H28BrNO4 | F(000) = 912 |
Mr = 438.35 | Dx = 1.363 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
a = 10.0979 (1) Å | Cell parameters from 8192 reflections |
b = 20.5473 (2) Å | θ = 2–26° |
c = 10.7452 (1) Å | µ = 1.95 mm−1 |
β = 106.685 (1)° | T = 203 K |
V = 2135.60 (4) Å3 | Irregular fragment, colourless |
Z = 4 | 0.60 × 0.35 × 0.31 mm |
Data collection top
Siemens SMART diffractometer | 8833 independent reflections |
Radiation source: fine-focus sealed tube | 6885 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.021 |
Area detector ω scans | θmax = 28.2°, θmin = 2.0° |
Absorption correction: multi-scan Blessing (1995) | h = −12→12 |
Tmin = 0.388, Tmax = 0.583 | k = −26→27 |
13334 measured reflections | l = 0→14 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.030 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.065 | Calculated w = 1/[σ2(Fo2)] |
S = 0.85 | (Δ/σ)max = 0.003 |
8833 reflections | Δρmax = 0.27 e Å−3 |
500 parameters | Δρmin = −0.26 e Å−3 |
1 restraint | Absolute structure: Flack (1983) |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.007 (4) |
Crystal data top
C21H28BrNO4 | V = 2135.60 (4) Å3 |
Mr = 438.35 | Z = 4 |
Monoclinic, P21 | Mo Kα radiation |
a = 10.0979 (1) Å | µ = 1.95 mm−1 |
b = 20.5473 (2) Å | T = 203 K |
c = 10.7452 (1) Å | 0.60 × 0.35 × 0.31 mm |
β = 106.685 (1)° | |
Data collection top
Siemens SMART diffractometer | 8833 independent reflections |
Absorption correction: multi-scan Blessing (1995) | 6885 reflections with I > 2σ(I) |
Tmin = 0.388, Tmax = 0.583 | Rint = 0.021 |
13334 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.030 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.065 | Δρmax = 0.27 e Å−3 |
S = 0.85 | Δρmin = −0.26 e Å−3 |
8833 reflections | Absolute structure: Flack (1983) |
500 parameters | Absolute structure parameter: 0.007 (4) |
1 restraint | |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Br1 | 0.86968 (4) | 0.109620 (12) | 0.35140 (3) | 0.06056 (10) | |
N1 | 1.0478 (3) | 0.24379 (11) | 0.0200 (2) | 0.0421 (5) | |
H1A | 1.062 (3) | 0.2473 (14) | −0.045 (3) | 0.051* | |
O1 | 0.98529 (18) | 0.16708 (8) | 0.15221 (17) | 0.0415 (4) | |
O2 | 0.96619 (19) | 0.34623 (8) | 0.01116 (16) | 0.0412 (4) | |
O3 | 1.2698 (2) | 0.34602 (12) | 0.22643 (19) | 0.0640 (6) | |
O4 | 1.4452 (3) | 0.33072 (16) | 0.4019 (2) | 0.0907 (9) | |
H4 | 1.496 (4) | 0.313 (2) | 0.350 (4) | 0.109* | |
C1 | 0.9611 (3) | 0.21611 (11) | 0.2297 (2) | 0.0342 (6) | |
C2 | 0.9111 (3) | 0.19843 (11) | 0.3333 (3) | 0.0377 (6) | |
C3 | 0.8911 (3) | 0.24468 (12) | 0.4192 (3) | 0.0419 (6) | |
C4 | 0.9215 (3) | 0.30953 (12) | 0.3972 (3) | 0.0420 (6) | |
H4A | 0.9127 | 0.3410 | 0.4579 | 0.050* | |
C4A | 0.9637 (3) | 0.33023 (11) | 0.2915 (2) | 0.0350 (6) | |
C5 | 0.9972 (3) | 0.40187 (11) | 0.2768 (2) | 0.0410 (6) | |
H5A | 1.0116 | 0.4084 | 0.1903 | 0.049* | |
C6 | 0.8842 (3) | 0.45091 (12) | 0.2927 (3) | 0.0493 (7) | |
H6A | 0.8982 | 0.4912 | 0.2475 | 0.059* | |
C7 | 0.9243 (3) | 0.46827 (14) | 0.4393 (3) | 0.0588 (8) | |
H7A | 0.9159 | 0.5153 | 0.4507 | 0.071* | |
H7B | 0.8633 | 0.4458 | 0.4816 | 0.071* | |
C8 | 1.0742 (4) | 0.44649 (15) | 0.4987 (3) | 0.0596 (8) | |
H8A | 1.0782 | 0.4100 | 0.5583 | 0.072* | |
H8B | 1.1296 | 0.4824 | 0.5472 | 0.072* | |
C9 | 1.1301 (3) | 0.42546 (13) | 0.3845 (3) | 0.0487 (7) | |
C10 | 1.2449 (3) | 0.37569 (15) | 0.4347 (3) | 0.0516 (7) | |
H10A | 1.3136 | 0.3954 | 0.5087 | 0.062* | |
H10B | 1.2047 | 0.3387 | 0.4687 | 0.062* | |
C11 | 1.0009 (3) | 0.29512 (11) | 0.0720 (2) | 0.0362 (6) | |
C12 | 1.3203 (3) | 0.34922 (14) | 0.3457 (3) | 0.0503 (7) | |
C12A | 0.9803 (3) | 0.28155 (11) | 0.2028 (2) | 0.0330 (5) | |
C13 | 0.7338 (3) | 0.43136 (14) | 0.2315 (3) | 0.0554 (8) | |
H13A | 0.7192 | 0.3884 | 0.2670 | 0.066* | |
C14 | 0.6986 (4) | 0.42522 (16) | 0.0847 (3) | 0.0682 (9) | |
H14A | 0.7637 | 0.3960 | 0.0625 | 0.102* | |
H14B | 0.7037 | 0.4677 | 0.0471 | 0.102* | |
H14C | 0.6057 | 0.4080 | 0.0508 | 0.102* | |
C15 | 0.6329 (4) | 0.48002 (19) | 0.2646 (4) | 0.0905 (13) | |
H15A | 0.5387 | 0.4681 | 0.2181 | 0.136* | |
H15B | 0.6522 | 0.5235 | 0.2391 | 0.136* | |
H15C | 0.6443 | 0.4791 | 0.3573 | 0.136* | |
C16 | 1.1906 (4) | 0.48575 (15) | 0.3321 (3) | 0.0718 (10) | |
H16A | 1.2725 | 0.5008 | 0.3977 | 0.108* | |
H16B | 1.1221 | 0.5202 | 0.3119 | 0.108* | |
H16C | 1.2150 | 0.4738 | 0.2542 | 0.108* | |
C17 | 0.8410 (4) | 0.22786 (15) | 0.5352 (3) | 0.0623 (9) | |
H17A | 0.8758 | 0.1853 | 0.5681 | 0.093* | |
H17B | 0.7407 | 0.2273 | 0.5092 | 0.093* | |
H17C | 0.8743 | 0.2602 | 0.6028 | 0.093* | |
C18 | 1.0891 (3) | 0.18423 (12) | 0.0908 (3) | 0.0435 (6) | |
H18A | 1.1787 | 0.1908 | 0.1578 | 0.052* | |
C19 | 1.1020 (3) | 0.12918 (13) | 0.0018 (3) | 0.0613 (8) | |
H19A | 1.1301 | 0.0898 | 0.0524 | 0.092* | |
H19B | 1.1707 | 0.1403 | −0.0419 | 0.092* | |
H19C | 1.0135 | 0.1220 | −0.0623 | 0.092* | |
Br2 | 0.47909 (4) | 0.012408 (12) | 0.27702 (3) | 0.06196 (10) | |
N2 | 0.8356 (2) | −0.12704 (10) | 0.1259 (2) | 0.0414 (5) | |
H2A | 0.906 (3) | −0.1369 (14) | 0.105 (3) | 0.050* | |
O21 | 0.6995 (2) | −0.04923 (8) | 0.18604 (17) | 0.0434 (4) | |
O22 | 0.83974 (18) | −0.23090 (8) | 0.19543 (17) | 0.0422 (4) | |
O23 | 0.6026 (2) | −0.21710 (14) | −0.0798 (2) | 0.0718 (7) | |
H23 | 0.639 (4) | −0.2019 (19) | −0.128 (4) | 0.086* | |
O24 | 0.4314 (3) | −0.23139 (15) | −0.2561 (2) | 0.0901 (9) | |
C21 | 0.6138 (3) | −0.09704 (11) | 0.2085 (2) | 0.0354 (6) | |
C22 | 0.5018 (3) | −0.07744 (12) | 0.2498 (2) | 0.0386 (6) | |
C23 | 0.4072 (3) | −0.12306 (12) | 0.2689 (3) | 0.0426 (6) | |
C24 | 0.4316 (3) | −0.18804 (12) | 0.2453 (2) | 0.0400 (6) | |
H24A | 0.3668 | −0.2190 | 0.2550 | 0.048* | |
C24A | 0.5447 (3) | −0.21029 (11) | 0.2085 (2) | 0.0347 (6) | |
C25 | 0.5569 (3) | −0.28223 (11) | 0.1757 (2) | 0.0355 (6) | |
H25A | 0.6486 | −0.2894 | 0.1619 | 0.043* | |
C26 | 0.5388 (3) | −0.33209 (12) | 0.2812 (3) | 0.0431 (6) | |
H26A | 0.5881 | −0.3721 | 0.2688 | 0.052* | |
C27 | 0.3836 (3) | −0.34970 (14) | 0.2416 (3) | 0.0553 (8) | |
H27A | 0.3719 | −0.3969 | 0.2465 | 0.066* | |
H27B | 0.3381 | −0.3286 | 0.3000 | 0.066* | |
C28 | 0.3205 (3) | −0.32609 (15) | 0.1029 (3) | 0.0572 (8) | |
H28A | 0.2587 | −0.2891 | 0.1014 | 0.069* | |
H28B | 0.2672 | −0.3610 | 0.0491 | 0.069* | |
C29 | 0.4424 (3) | −0.30528 (13) | 0.0507 (3) | 0.0446 (6) | |
C30 | 0.3882 (3) | −0.25396 (15) | −0.0562 (3) | 0.0529 (7) | |
H30A | 0.3021 | −0.2707 | −0.1154 | 0.064* | |
H30B | 0.3643 | −0.2149 | −0.0148 | 0.064* | |
C31 | 0.7773 (3) | −0.17810 (11) | 0.1705 (2) | 0.0338 (6) | |
C32 | 0.4791 (3) | −0.23343 (14) | −0.1363 (3) | 0.0477 (7) | |
C32A | 0.6418 (3) | −0.16350 (11) | 0.1943 (2) | 0.0333 (5) | |
C33 | 0.6005 (3) | −0.31241 (13) | 0.4228 (3) | 0.0479 (7) | |
H33A | 0.5569 | −0.2711 | 0.4376 | 0.057* | |
C34 | 0.7554 (3) | −0.30182 (16) | 0.4557 (3) | 0.0623 (8) | |
H34A | 0.7745 | −0.2677 | 0.4009 | 0.093* | |
H34B | 0.7997 | −0.3418 | 0.4410 | 0.093* | |
H34C | 0.7911 | −0.2892 | 0.5461 | 0.093* | |
C35 | 0.5722 (4) | −0.36446 (16) | 0.5160 (3) | 0.0712 (10) | |
H35A | 0.4734 | −0.3719 | 0.4957 | 0.107* | |
H35B | 0.6073 | −0.3493 | 0.6049 | 0.107* | |
H35C | 0.6181 | −0.4047 | 0.5058 | 0.107* | |
C36 | 0.4957 (3) | −0.36449 (15) | −0.0084 (3) | 0.0593 (8) | |
H36A | 0.4223 | −0.3812 | −0.0807 | 0.089* | |
H36B | 0.5251 | −0.3981 | 0.0572 | 0.089* | |
H36C | 0.5734 | −0.3514 | −0.0388 | 0.089* | |
C37 | 0.2820 (4) | −0.10412 (15) | 0.3091 (3) | 0.0643 (9) | |
H37A | 0.2221 | −0.1416 | 0.3028 | 0.096* | |
H37B | 0.2324 | −0.0699 | 0.2525 | 0.096* | |
H37C | 0.3105 | −0.0886 | 0.3981 | 0.096* | |
C38 | 0.7614 (3) | −0.06752 (11) | 0.0866 (3) | 0.0415 (6) | |
H38A | 0.6887 | −0.0740 | 0.0033 | 0.050* | |
C39 | 0.8582 (4) | −0.01349 (13) | 0.0722 (3) | 0.0615 (9) | |
H39A | 0.8989 | −0.0245 | 0.0035 | 0.092* | |
H39B | 0.9307 | −0.0082 | 0.1533 | 0.092* | |
H39C | 0.8067 | 0.0268 | 0.0507 | 0.092* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Br1 | 0.0853 (2) | 0.03239 (14) | 0.0704 (2) | −0.00629 (15) | 0.03257 (17) | 0.01026 (13) |
N1 | 0.0500 (14) | 0.0407 (12) | 0.0404 (13) | −0.0056 (10) | 0.0204 (12) | −0.0045 (10) |
O1 | 0.0454 (11) | 0.0303 (9) | 0.0524 (11) | −0.0032 (8) | 0.0199 (9) | −0.0048 (8) |
O2 | 0.0478 (12) | 0.0407 (10) | 0.0360 (10) | −0.0013 (8) | 0.0135 (8) | 0.0045 (8) |
O3 | 0.0529 (13) | 0.0946 (17) | 0.0403 (12) | −0.0041 (12) | 0.0065 (10) | −0.0062 (11) |
O4 | 0.076 (2) | 0.145 (3) | 0.0465 (15) | 0.0250 (17) | 0.0110 (14) | 0.0061 (16) |
C1 | 0.0316 (14) | 0.0303 (12) | 0.0382 (14) | −0.0014 (10) | 0.0063 (12) | −0.0033 (10) |
C2 | 0.0385 (15) | 0.0269 (13) | 0.0470 (16) | −0.0039 (11) | 0.0112 (13) | 0.0069 (11) |
C3 | 0.0438 (16) | 0.0401 (14) | 0.0444 (15) | 0.0039 (12) | 0.0168 (13) | 0.0100 (12) |
C4 | 0.0526 (17) | 0.0332 (13) | 0.0430 (16) | 0.0034 (12) | 0.0180 (14) | −0.0010 (11) |
C4A | 0.0396 (15) | 0.0292 (12) | 0.0366 (14) | 0.0015 (10) | 0.0119 (12) | 0.0032 (10) |
C5 | 0.0569 (18) | 0.0306 (13) | 0.0343 (14) | −0.0070 (12) | 0.0111 (13) | −0.0016 (10) |
C6 | 0.074 (2) | 0.0265 (13) | 0.0454 (16) | 0.0017 (13) | 0.0141 (15) | 0.0001 (11) |
C7 | 0.084 (2) | 0.0392 (15) | 0.0520 (19) | 0.0002 (16) | 0.0168 (17) | −0.0107 (13) |
C8 | 0.084 (3) | 0.0473 (16) | 0.0449 (18) | −0.0071 (16) | 0.0144 (17) | −0.0124 (13) |
C9 | 0.064 (2) | 0.0419 (15) | 0.0372 (15) | −0.0152 (14) | 0.0092 (14) | −0.0035 (11) |
C10 | 0.0547 (19) | 0.0616 (18) | 0.0354 (15) | −0.0131 (15) | 0.0079 (14) | −0.0016 (13) |
C11 | 0.0356 (15) | 0.0348 (13) | 0.0378 (15) | −0.0086 (11) | 0.0097 (12) | −0.0041 (11) |
C12 | 0.0494 (19) | 0.0577 (18) | 0.0380 (17) | −0.0129 (15) | 0.0032 (14) | 0.0045 (13) |
C12A | 0.0323 (14) | 0.0312 (12) | 0.0359 (14) | −0.0043 (10) | 0.0104 (11) | 0.0008 (10) |
C13 | 0.065 (2) | 0.0373 (15) | 0.0594 (19) | 0.0143 (14) | 0.0103 (16) | −0.0019 (13) |
C14 | 0.072 (2) | 0.066 (2) | 0.059 (2) | 0.0138 (18) | 0.0076 (17) | −0.0087 (16) |
C15 | 0.104 (3) | 0.082 (2) | 0.077 (3) | 0.051 (2) | 0.011 (2) | −0.012 (2) |
C16 | 0.089 (3) | 0.0552 (18) | 0.063 (2) | −0.0346 (18) | 0.0091 (19) | −0.0057 (16) |
C17 | 0.089 (3) | 0.0514 (17) | 0.060 (2) | −0.0002 (17) | 0.0427 (19) | 0.0097 (14) |
C18 | 0.0415 (16) | 0.0376 (14) | 0.0538 (17) | −0.0040 (12) | 0.0174 (14) | −0.0057 (12) |
C19 | 0.072 (2) | 0.0422 (16) | 0.079 (2) | −0.0003 (15) | 0.0350 (18) | −0.0146 (14) |
Br2 | 0.0893 (2) | 0.03447 (14) | 0.0758 (2) | 0.01116 (15) | 0.04558 (19) | −0.00452 (14) |
N2 | 0.0424 (14) | 0.0394 (12) | 0.0468 (13) | 0.0005 (10) | 0.0201 (11) | −0.0022 (10) |
O21 | 0.0582 (12) | 0.0312 (9) | 0.0472 (11) | −0.0027 (8) | 0.0257 (9) | −0.0047 (8) |
O22 | 0.0416 (10) | 0.0425 (10) | 0.0420 (10) | 0.0079 (8) | 0.0114 (8) | 0.0050 (8) |
O23 | 0.0507 (15) | 0.120 (2) | 0.0416 (13) | −0.0131 (14) | 0.0088 (11) | 0.0011 (13) |
O24 | 0.0717 (16) | 0.150 (3) | 0.0408 (14) | −0.0255 (17) | 0.0037 (12) | −0.0069 (14) |
C21 | 0.0464 (16) | 0.0304 (12) | 0.0292 (13) | 0.0016 (11) | 0.0104 (12) | 0.0008 (10) |
C22 | 0.0535 (17) | 0.0279 (13) | 0.0353 (14) | 0.0082 (12) | 0.0141 (13) | 0.0011 (10) |
C23 | 0.0535 (17) | 0.0413 (14) | 0.0385 (15) | 0.0098 (13) | 0.0218 (13) | 0.0020 (11) |
C24 | 0.0453 (16) | 0.0371 (14) | 0.0411 (15) | −0.0003 (12) | 0.0179 (13) | 0.0012 (11) |
C24A | 0.0393 (15) | 0.0330 (13) | 0.0292 (14) | 0.0045 (11) | 0.0058 (11) | 0.0025 (10) |
C25 | 0.0367 (15) | 0.0293 (12) | 0.0413 (15) | 0.0010 (11) | 0.0124 (12) | −0.0028 (10) |
C26 | 0.0488 (16) | 0.0299 (13) | 0.0522 (17) | −0.0032 (12) | 0.0170 (13) | −0.0006 (11) |
C27 | 0.057 (2) | 0.0452 (16) | 0.067 (2) | −0.0139 (14) | 0.0224 (16) | −0.0011 (14) |
C28 | 0.0450 (17) | 0.0610 (19) | 0.063 (2) | −0.0122 (15) | 0.0121 (15) | −0.0157 (15) |
C29 | 0.0387 (16) | 0.0462 (15) | 0.0481 (17) | −0.0019 (12) | 0.0111 (13) | −0.0101 (12) |
C30 | 0.0401 (16) | 0.069 (2) | 0.0450 (17) | 0.0083 (15) | 0.0044 (13) | −0.0083 (14) |
C31 | 0.0369 (15) | 0.0350 (13) | 0.0276 (13) | −0.0023 (11) | 0.0063 (11) | −0.0042 (10) |
C32 | 0.0388 (17) | 0.0593 (17) | 0.0394 (17) | 0.0078 (14) | 0.0023 (14) | −0.0090 (13) |
C32A | 0.0422 (15) | 0.0325 (12) | 0.0254 (12) | 0.0033 (11) | 0.0102 (11) | −0.0012 (10) |
C33 | 0.0607 (19) | 0.0362 (14) | 0.0450 (17) | −0.0004 (13) | 0.0123 (14) | 0.0090 (12) |
C34 | 0.070 (2) | 0.0588 (19) | 0.0523 (19) | −0.0062 (16) | 0.0079 (16) | 0.0135 (15) |
C35 | 0.084 (3) | 0.063 (2) | 0.066 (2) | −0.0059 (18) | 0.0218 (19) | 0.0229 (17) |
C36 | 0.059 (2) | 0.0533 (18) | 0.062 (2) | 0.0003 (15) | 0.0112 (16) | −0.0205 (15) |
C37 | 0.072 (2) | 0.0515 (18) | 0.087 (3) | 0.0092 (16) | 0.052 (2) | 0.0056 (16) |
C38 | 0.0549 (17) | 0.0348 (13) | 0.0393 (15) | −0.0011 (12) | 0.0207 (13) | −0.0035 (11) |
C39 | 0.081 (2) | 0.0352 (15) | 0.084 (2) | −0.0094 (15) | 0.048 (2) | −0.0039 (14) |
Geometric parameters (Å, º) top
Br1—C2 | 1.895 (2) | Br2—C22 | 1.894 (2) |
N1—C11 | 1.342 (3) | N2—C31 | 1.356 (3) |
N1—C18 | 1.438 (3) | N2—C38 | 1.433 (3) |
O1—C1 | 1.373 (3) | O21—C21 | 1.376 (3) |
O1—C18 | 1.434 (3) | O21—C38 | 1.434 (3) |
O2—C11 | 1.233 (3) | O22—C31 | 1.245 (3) |
O3—C12 | 1.238 (3) | O23—C32 | 1.265 (4) |
O4—C12 | 1.289 (4) | O24—C32 | 1.239 (3) |
C1—C2 | 1.396 (3) | C21—C22 | 1.387 (3) |
C1—C12A | 1.401 (3) | C21—C32A | 1.412 (3) |
C2—C3 | 1.380 (4) | C22—C23 | 1.395 (4) |
C3—C4 | 1.403 (3) | C23—C24 | 1.394 (3) |
C3—C17 | 1.514 (4) | C23—C37 | 1.501 (4) |
C4—C4A | 1.390 (3) | C24—C24A | 1.389 (3) |
C4A—C12A | 1.425 (3) | C24A—C32A | 1.413 (3) |
C4A—C5 | 1.529 (3) | C24A—C25 | 1.533 (3) |
C5—C6 | 1.568 (4) | C25—C29 | 1.573 (4) |
C5—C9 | 1.576 (4) | C25—C26 | 1.576 (3) |
C6—C13 | 1.525 (4) | C26—C33 | 1.524 (4) |
C6—C7 | 1.551 (4) | C26—C27 | 1.545 (4) |
C7—C8 | 1.531 (4) | C27—C28 | 1.522 (4) |
C8—C9 | 1.553 (4) | C28—C29 | 1.551 (4) |
C9—C10 | 1.523 (4) | C29—C30 | 1.540 (4) |
C9—C16 | 1.556 (4) | C29—C36 | 1.540 (4) |
C10—C12 | 1.487 (4) | C30—C32 | 1.489 (4) |
C11—C12A | 1.504 (3) | C31—C32A | 1.493 (3) |
C13—C14 | 1.519 (4) | C33—C34 | 1.517 (4) |
C13—C15 | 1.540 (4) | C33—C35 | 1.547 (4) |
C18—C19 | 1.511 (4) | C38—C39 | 1.516 (4) |
| | | |
C11—N1—C18 | 122.1 (2) | C31—N2—C38 | 121.4 (2) |
C1—O1—C18 | 112.33 (18) | C21—O21—C38 | 111.97 (18) |
O1—C1—C2 | 117.4 (2) | O21—C21—C22 | 117.4 (2) |
O1—C1—C12A | 121.3 (2) | O21—C21—C32A | 121.1 (2) |
C2—C1—C12A | 121.2 (2) | C22—C21—C32A | 121.5 (2) |
C3—C2—C1 | 120.7 (2) | C21—C22—C23 | 120.5 (2) |
C3—C2—Br1 | 121.03 (19) | C21—C22—Br2 | 118.60 (19) |
C1—C2—Br1 | 118.28 (18) | C23—C22—Br2 | 120.90 (19) |
C2—C3—C4 | 117.4 (2) | C22—C23—C24 | 116.9 (2) |
C2—C3—C17 | 122.8 (2) | C22—C23—C37 | 122.5 (2) |
C4—C3—C17 | 119.8 (2) | C24—C23—C37 | 120.5 (3) |
C4A—C4—C3 | 124.2 (2) | C24A—C24—C23 | 124.7 (2) |
C4—C4A—C12A | 117.1 (2) | C24—C24A—C32A | 117.4 (2) |
C4—C4A—C5 | 120.5 (2) | C24—C24A—C25 | 120.7 (2) |
C12A—C4A—C5 | 122.3 (2) | C32A—C24A—C25 | 121.8 (2) |
C4A—C5—C6 | 114.7 (2) | C24A—C25—C29 | 113.5 (2) |
C4A—C5—C9 | 112.8 (2) | C24A—C25—C26 | 115.3 (2) |
C6—C5—C9 | 102.5 (2) | C29—C25—C26 | 102.11 (19) |
C13—C6—C7 | 115.8 (3) | C33—C26—C27 | 115.4 (2) |
C13—C6—C5 | 116.7 (2) | C33—C26—C25 | 116.5 (2) |
C7—C6—C5 | 105.8 (2) | C27—C26—C25 | 105.8 (2) |
C8—C7—C6 | 107.2 (2) | C28—C27—C26 | 107.5 (2) |
C7—C8—C9 | 107.0 (2) | C27—C28—C29 | 106.8 (2) |
C10—C9—C8 | 108.6 (2) | C30—C29—C36 | 109.0 (2) |
C10—C9—C16 | 109.0 (3) | C30—C29—C28 | 108.0 (2) |
C8—C9—C16 | 109.5 (2) | C36—C29—C28 | 109.8 (2) |
C10—C9—C5 | 117.1 (2) | C30—C29—C25 | 116.6 (2) |
C8—C9—C5 | 103.8 (2) | C36—C29—C25 | 109.4 (2) |
C16—C9—C5 | 108.6 (2) | C28—C29—C25 | 103.9 (2) |
C12—C10—C9 | 119.7 (2) | C32—C30—C29 | 118.6 (2) |
O2—C11—N1 | 121.9 (2) | O22—C31—N2 | 120.4 (2) |
O2—C11—C12A | 123.9 (2) | O22—C31—C32A | 124.8 (2) |
N1—C11—C12A | 113.8 (2) | N2—C31—C32A | 114.7 (2) |
O3—C12—O4 | 121.8 (3) | O24—C32—O23 | 121.6 (3) |
O3—C12—C10 | 123.4 (3) | O24—C32—C30 | 119.4 (3) |
O4—C12—C10 | 114.8 (3) | O23—C32—C30 | 119.0 (3) |
C1—C12A—C4A | 119.1 (2) | C21—C32A—C24A | 118.7 (2) |
C1—C12A—C11 | 115.8 (2) | C21—C32A—C31 | 115.8 (2) |
C4A—C12A—C11 | 124.7 (2) | C24A—C32A—C31 | 125.5 (2) |
C14—C13—C6 | 112.2 (3) | C34—C33—C26 | 111.6 (2) |
C14—C13—C15 | 108.7 (3) | C34—C33—C35 | 108.6 (2) |
C6—C13—C15 | 111.9 (3) | C26—C33—C35 | 111.4 (2) |
O1—C18—N1 | 108.2 (2) | O21—C38—N2 | 107.88 (19) |
O1—C18—C19 | 108.3 (2) | O21—C38—C39 | 108.4 (2) |
N1—C18—C19 | 111.5 (2) | N2—C38—C39 | 110.9 (2) |
| | | |
C4—C4A—C5—C6 | −49.4 (3) | C5—C9—C10—C12 | 65.2 (3) |
C24—C24A—C25—C26 | −51.6 (3) | C25—C29—C30—C32 | 72.9 (3) |
C4—C4A—C5—C9 | 67.4 (3) | C5—C6—C13—C14 | −63.1 (3) |
C24—C24A—C25—C29 | 65.7 (3) | C25—C26—C33—C34 | −60.1 (3) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O22i | 0.75 (3) | 2.18 (3) | 2.903 (3) | 163 (3) |
O4—H4···O24i | 0.94 (4) | 1.67 (4) | 2.599 (4) | 170 (4) |
N2—H2A···O2ii | 0.83 (3) | 2.06 (3) | 2.858 (3) | 160 (3) |
O23—H23···O3ii | 0.78 (4) | 1.87 (4) | 2.643 (3) | 171 (4) |
Symmetry codes: (i) −x+2, y+1/2, −z; (ii) −x+2, y−1/2, −z. |
Experimental details
| (I) | (II) |
Crystal data |
Chemical formula | C20H25BrO5 | C21H28BrNO4 |
Mr | 425.31 | 438.35 |
Crystal system, space group | Orthorhombic, P212121 | Monoclinic, P21 |
Temperature (K) | 203 | 203 |
a, b, c (Å) | 7.0958 (13), 16.050 (3), 16.856 (4) | 10.0979 (1), 20.5473 (2), 10.7452 (1) |
α, β, γ (°) | 90, 90, 90 | 90, 106.685 (1), 90 |
V (Å3) | 1919.7 (7) | 2135.60 (4) |
Z | 4 | 4 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 2.17 | 1.95 |
Crystal size (mm) | 0.32 × 0.16 × 0.10 | 0.60 × 0.35 × 0.31 |
|
Data collection |
Diffractometer | Siemens SMART diffractometer | Siemens SMART diffractometer |
Absorption correction | Multi-scan Blessing (1995) | Multi-scan Blessing (1995) |
Tmin, Tmax | 0.544, 0.812 | 0.388, 0.583 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8269, 3020, 2738 | 13334, 8833, 6885 |
Rint | 0.041 | 0.021 |
(sin θ/λ)max (Å−1) | 0.617 | 0.665 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.040, 0.107, 1.07 | 0.030, 0.065, 0.85 |
No. of reflections | 3020 | 8833 |
No. of parameters | 239 | 500 |
No. of restraints | 0 | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.38, −0.47 | 0.27, −0.26 |
Absolute structure | Flack (1983) | Flack (1983) |
Absolute structure parameter | 0.000 (13) | 0.007 (4) |
Selected geometric parameters (Å, º) for (I) topBr1—C2 | 1.902 (4) | C5—C6 | 1.565 (5) |
O1—C10 | 1.404 (5) | C6—C7 | 1.526 (6) |
O2—C11 | 1.235 (5) | C6—C12 | 1.528 (5) |
O3—C1 | 1.364 (6) | C7—C8 | 1.513 (6) |
O4—C17 | 1.172 (6) | C8—C9 | 1.575 (6) |
O5—C17 | 1.318 (5) | C9—C15 | 1.525 (6) |
O5—C18 | 1.462 (5) | C9—C10 | 1.549 (5) |
C5—C9 | 1.562 (5) | | |
| | | |
C5—C6—C12—C13 | 172.3 (4) | C6—C5—C9—C8 | 34.9 (4) |
C9—C10—C17—O5 | 163.3 (3) | C4A—C5—C9—C10 | 28.7 (5) |
Hydrogen-bond geometry (Å, º) for (I) top
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3A···O2 | 0.92 (6) | 1.75 (6) | 2.580 (6) | 149 (7) |
Selected geometric parameters (Å, º) for (II) topBr1—C2 | 1.895 (2) | Br2—C22 | 1.894 (2) |
N1—C11 | 1.342 (3) | N2—C31 | 1.356 (3) |
N1—C18 | 1.438 (3) | N2—C38 | 1.433 (3) |
O1—C1 | 1.373 (3) | O21—C21 | 1.376 (3) |
O1—C18 | 1.434 (3) | O21—C38 | 1.434 (3) |
O2—C11 | 1.233 (3) | O22—C31 | 1.245 (3) |
O3—C12 | 1.238 (3) | O23—C32 | 1.265 (4) |
O4—C12 | 1.289 (4) | O24—C32 | 1.239 (3) |
C4A—C5 | 1.529 (3) | C24A—C25 | 1.533 (3) |
C5—C6 | 1.568 (4) | C25—C29 | 1.573 (4) |
C5—C9 | 1.576 (4) | C25—C26 | 1.576 (3) |
C6—C13 | 1.525 (4) | C26—C33 | 1.524 (4) |
C6—C7 | 1.551 (4) | C26—C27 | 1.545 (4) |
C7—C8 | 1.531 (4) | C27—C28 | 1.522 (4) |
C8—C9 | 1.553 (4) | C28—C29 | 1.551 (4) |
C9—C10 | 1.523 (4) | C29—C30 | 1.540 (4) |
C9—C16 | 1.556 (4) | C29—C36 | 1.540 (4) |
C10—C12 | 1.487 (4) | C30—C32 | 1.489 (4) |
C11—C12A | 1.504 (3) | C31—C32A | 1.493 (3) |
| | | |
C4—C4A—C5—C6 | −49.4 (3) | C5—C9—C10—C12 | 65.2 (3) |
C24—C24A—C25—C26 | −51.6 (3) | C25—C29—C30—C32 | 72.9 (3) |
C4—C4A—C5—C9 | 67.4 (3) | C5—C6—C13—C14 | −63.1 (3) |
C24—C24A—C25—C29 | 65.7 (3) | C25—C26—C33—C34 | −60.1 (3) |
Hydrogen-bond geometry (Å, º) for (II) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O22i | 0.75 (3) | 2.18 (3) | 2.903 (3) | 163 (3) |
O4—H4···O24i | 0.94 (4) | 1.67 (4) | 2.599 (4) | 170 (4) |
N2—H2A···O2ii | 0.83 (3) | 2.06 (3) | 2.858 (3) | 160 (3) |
O23—H23···O3ii | 0.78 (4) | 1.87 (4) | 2.643 (3) | 171 (4) |
Symmetry codes: (i) −x+2, y+1/2, −z; (ii) −x+2, y−1/2, −z. |
As part of a search for biologically active compounds from New Zealand sponges, extracts from Hamigera taragaensis yielded eight new compounds. Details have been published elsewhere (Wellington et al., 2000) in which the structural elucidation, by NMR spectroscopy, of the seven compounds and the structural revision of an eighth compound was described. In order to confirm the structure assignments and establish the absolute stereochemistries, single-crystal X-ray studies were carried out on hamigeran A, (I), and the decomposition product, (II), of hamigeran D, (III). \sch
The structure of (I) is illustrated in Figure 1 which shows the absolute stereochemistry and confirms the chemical assignment. The six-membered ring and the five-membered ring are cis fused at the ring junction C5—C9. There is some strain in the molecule at this point evidenced by the bond lengths C5—C6 1.565 (5), C5—C9 1.562 (5) and C8—C9 1.575 (6) Å which are slightly longer than the remaining C - C single bonds. These distances are consistent with tabulated values for a pentasubstituted C—C bond (Allen et al., 1987). The C6—C12 bond is staggered, C5—C6—C12—C13 172.3 (4)°, orienting the isopropyl group well clear of the five-membered ring. The torsion angle C9—C10—C17—O5 is 163.3 (3)°, which orients the ester group so as to minimize steric interactions in this area.
There is an intramolecular hydrogen bond between the phenolic proton, H3A, and the carbonyl oxygen O2, O3—O2 separation 2.580 (6) Å. The hydroxyl proton, H1A, does not seem to be involved in a hydrogen bond, the closest approach to an acceptor atom being 2.80 Å to O5. There are no significant intermolecular interactions.
The structure of (II) contains two independent molecules in the unit cell which are linked into a dimer through hydrogen bonds. Figure 2 shows the structure of the dimeric unit. The numbering of the oxygen and carbon atoms of the second molecule are obtained by adding 20 to those of the first molecule. The crystal structure confirms the structural assignment and establishes the absolute configuration. The two molecules have a remarkably similar conformation, even though there is the possibility of free rotation about the C4A—C5, C6—C13 and C9—C10 bonds. The torsion angles within the two molecules are C5—C9—C10—C12 65.2 (3) and 72.9 (3)°; C5—C6—C13—C14, -63.1 (3) and -60.1 (3)°, respectively. The same bond lengthing around the penta-substituted bond C5—C9 as shown in [1] is seen again here; C5—C6, 1.568 (4) and 1.576 (3); C5—C9, 1.576 (4), 1.573 (4); C8—C9, 1.553 (4) and 1.551 (4), even though the constraint on the configuration imposed by the ring junction is absent.
The two independent molecules are linked by intermolecular hydrogen bonds. There is a strong interaction between the carboxylic acid groups; O4—O24 2.599 (4) and O3—O23 2.643 (3) Å. There is a somewhat weaker interaction between the amide groups; N1—O22 2.903 (3) and N2—O2 2.858 (3), as evidenced by the longer approach.