Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807037828/av3099sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807037828/av3099Isup2.hkl |
CCDC reference: 660213
Benzylamine (30 g, 0.28 mol) was added to a solution of acetic acid (170 g, 2.83 mol) at 130–150°C with stirring. The reaction mixture was then brought to reflux for 6 h, allowed to cool and excess of acetic acid solution was evaporated under reduced pressure to give a white precipitate. The precipitate was dissolved in petroleum ether and the solution was left for crystallization at room temperature. After a few days, the deposited white crystals were collected and recrystallized from petroleum ether, giving single, needle-shaped crystals of quality suitable for X-ray measurement. The yield 34 g, 80%; m.p. 57°C; literature m.p. 58 - 59°C (Kotera et al., 1968).
The IR spectra of N-benzylacetamide crystals were measured by a transmission method in the frequency ranges of the proton and deuteron stretching vibration bands, νN—H and νN—D. Spectral experiment were performed at room temperature and at the temperature of liquid nitrogen (77 K), using polarized radiation. The solid-state spectra were measured with the 2 cm-1 resolution for the normal incidence of the radiation beam, using the FT—IR Nicolet Magna 560 spectrometer.
Some of the hydrogen atoms were located in a difference Fourier map and refined freely; other H atoms were placed in calculated positions 0,98 Å (methyl C) and refined as riding with Uiso (H) = 1,5Ueq (C) for the methyl H atoms.
We report here the synthesis, isolation of single crystals and structure determination of N-benzylacetamide, (I).
The title compound is subject of our study of a generation mechanism of IR spectra of hydrogen-bonded molecular crystals (Flakus & Michta, 2004, 2005; Flakus et al., 2007; Flakus, Tyl & Jones, 2003; Flakus & Pyzik, 2006). The spectral studies were preceded by determination of the crystal X-ray structure. Measurement of the IR spectra and theoretical analysis of the results concerned e.g. the linear dichroic effects, the H/D isotopic and temperature effects, observed in the solid-state IR spectra of the hydrogen and of the deuterium bond at the frequency ranges of the νN—H and νN—D bands, respectively. Some spectacular effects are especially visible for those systems, where the proton-acceptor atom is oxygen (Flakus & Michta, 2003).
The structure of (I) with the atomic numbering scheme is presented in Fig. 1. Molecules of (I) are interconnected by a framework of intermolecular N—H···O hydrogen bonds, viz. N1—H1N···O1, respectively, as shown in Fig. 2 and detailed in Table 1. The Fig. 2 also shows that in the crystal structure of (I) the molecules interact via N—H···O hydrogen bonds, forming infinite chains perpendicular to the b axis. The values of the H—A and D···A distances and the D—H···A angle (Table 1) characterize this bond as a weak hydrogen bond (Desiraju & Steiner, 1999), and agree with relevant data for N-benzylacetamide forming intermolecular N—H···O hydrogen bonds [D···A = 2.90 (12) Å and D—H···A = 168.7 (9)°]. The weakening of the intermolecular hydrogen bond in (I) is supported by IR spectroscopic data. The band of the isolated N—H stretching vibration, νN—H, was located in the 3400–3100 cm-1 frequency range.
For related literature, see: Desiraju & Steiner (1999); Flakus & Michta (2003, 2004, 2005); Flakus & Pyzik (2006); Flakus et al. (2003, 2007); Kotera et al. (1968).
Data collection: CrysAlis CCD (Oxford Diffraction, 2007); cell refinement: CrysAlis CCD; data reduction: CrysAlis RED (Oxford Diffraction, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: publCIF (Westrip, 2007).
C9H11NO | Z = 4 |
Mr = 149.19 | F(000) = 320 |
Monoclinic, P21/c | Dx = 1.196 Mg m−3 |
a = 4.8383 (10) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 14.906 (3) Å | µ = 0.08 mm−1 |
c = 11.663 (2) Å | T = 298 K |
β = 100.04 (3)° | Needle, white |
V = 828.3 (3) Å3 | 0.60 × 0.12 × 0.01 mm |
Oxford Diffraction KM-4 CCD Sapphire3 diffractometer | 1377 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.017 |
Graphite monochromator | θmax = 32.8°, θmin = 3.3° |
θ scans | h = −3→7 |
7651 measured reflections | k = −22→22 |
2718 independent reflections | l = −17→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.096 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0459P)2] where P = (Fo2 + 2Fc2)/3 |
2718 reflections | (Δ/σ)max < 0.001 |
133 parameters | Δρmax = 0.18 e Å−3 |
0 restraints | Δρmin = −0.18 e Å−3 |
C9H11NO | V = 828.3 (3) Å3 |
Mr = 149.19 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 4.8383 (10) Å | µ = 0.08 mm−1 |
b = 14.906 (3) Å | T = 298 K |
c = 11.663 (2) Å | 0.60 × 0.12 × 0.01 mm |
β = 100.04 (3)° |
Oxford Diffraction KM-4 CCD Sapphire3 diffractometer | 1377 reflections with I > 2σ(I) |
7651 measured reflections | Rint = 0.017 |
2718 independent reflections |
R[F2 > 2σ(F2)] = 0.039 | 0 restraints |
wR(F2) = 0.096 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | Δρmax = 0.18 e Å−3 |
2718 reflections | Δρmin = −0.18 e Å−3 |
133 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.17528 (16) | 0.41069 (5) | 0.71931 (7) | 0.0389 (2) | |
O1 | −0.22568 (12) | 0.44356 (5) | 0.78353 (6) | 0.0548 (2) | |
C1 | 0.22770 (18) | 0.31836 (6) | 0.55164 (8) | 0.0382 (2) | |
C2 | 0.3398 (2) | 0.23405 (7) | 0.54011 (9) | 0.0454 (3) | |
C3 | 0.4952 (2) | 0.21655 (8) | 0.45370 (9) | 0.0520 (3) | |
C4 | 0.5422 (2) | 0.28301 (9) | 0.37859 (9) | 0.0553 (3) | |
C5 | 0.4327 (3) | 0.36742 (9) | 0.38894 (9) | 0.0569 (3) | |
C6 | 0.2780 (2) | 0.38484 (8) | 0.47474 (9) | 0.0490 (3) | |
C7 | 0.0568 (2) | 0.33683 (8) | 0.64518 (10) | 0.0471 (3) | |
C8 | 0.02600 (17) | 0.45714 (6) | 0.78448 (8) | 0.0372 (2) | |
C9 | 0.1794 (2) | 0.52948 (8) | 0.85890 (9) | 0.0546 (3) | |
H1N | 0.362 (2) | 0.4186 (7) | 0.7291 (9) | 0.052 (3)* | |
H2 | 0.302 (2) | 0.1875 (7) | 0.5928 (10) | 0.061 (3)* | |
H3 | 0.572 (2) | 0.1552 (8) | 0.4457 (10) | 0.068 (3)* | |
H4 | 0.648 (3) | 0.2737 (8) | 0.3205 (11) | 0.070 (4)* | |
H5 | 0.465 (3) | 0.4141 (9) | 0.3392 (11) | 0.083 (4)* | |
H6 | 0.213 (2) | 0.4431 (8) | 0.4854 (10) | 0.060 (3)* | |
H9A | 0.1117 | 0.5871 | 0.8296 | 0.082* | |
H9B | 0.3766 | 0.5251 | 0.8573 | 0.082* | |
H9C | 0.1483 | 0.5227 | 0.9375 | 0.082* | |
H17 | −0.141 (3) | 0.3521 (7) | 0.6096 (9) | 0.063 (3)* | |
H27 | 0.045 (2) | 0.2809 (8) | 0.6986 (10) | 0.067 (3)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0224 (4) | 0.0499 (5) | 0.0451 (5) | −0.0047 (3) | 0.0080 (3) | −0.0065 (4) |
O1 | 0.0251 (4) | 0.0719 (5) | 0.0702 (5) | −0.0032 (3) | 0.0162 (3) | −0.0056 (4) |
C1 | 0.0290 (4) | 0.0436 (6) | 0.0405 (5) | −0.0056 (4) | 0.0021 (4) | −0.0050 (4) |
C2 | 0.0484 (6) | 0.0404 (6) | 0.0456 (6) | −0.0050 (4) | 0.0035 (5) | −0.0017 (5) |
C3 | 0.0539 (6) | 0.0490 (7) | 0.0506 (6) | 0.0076 (5) | 0.0022 (5) | −0.0127 (6) |
C4 | 0.0531 (7) | 0.0732 (8) | 0.0406 (6) | 0.0062 (6) | 0.0107 (5) | −0.0091 (6) |
C5 | 0.0627 (7) | 0.0624 (8) | 0.0475 (6) | 0.0040 (6) | 0.0152 (5) | 0.0105 (6) |
C6 | 0.0486 (6) | 0.0437 (6) | 0.0554 (6) | 0.0086 (5) | 0.0114 (5) | 0.0035 (5) |
C7 | 0.0355 (5) | 0.0545 (7) | 0.0529 (6) | −0.0121 (5) | 0.0123 (5) | −0.0099 (5) |
C8 | 0.0265 (4) | 0.0462 (6) | 0.0404 (5) | 0.0004 (4) | 0.0101 (4) | 0.0049 (4) |
C9 | 0.0422 (6) | 0.0658 (7) | 0.0599 (7) | −0.0076 (5) | 0.0203 (5) | −0.0174 (6) |
N1—C8 | 1.3305 (12) | C4—C5 | 1.3786 (18) |
N1—C7 | 1.4544 (13) | C4—H4 | 0.928 (12) |
N1—H1N | 0.897 (11) | C5—C6 | 1.3747 (16) |
O1—C8 | 1.2325 (10) | C5—H5 | 0.937 (14) |
C1—C2 | 1.3845 (14) | C6—H6 | 0.940 (11) |
C1—C6 | 1.3863 (14) | C7—H17 | 1.000 (12) |
C1—C7 | 1.5046 (14) | C7—H27 | 1.048 (12) |
C2—C3 | 1.3831 (16) | C8—C9 | 1.4976 (14) |
C2—H2 | 0.966 (11) | C9—H9A | 0.9600 |
C3—C4 | 1.3674 (16) | C9—H9B | 0.9600 |
C3—H3 | 0.998 (12) | C9—H9C | 0.9600 |
C8—N1—C7 | 122.45 (8) | C5—C6—C1 | 121.00 (11) |
C8—N1—H1N | 119.5 (7) | C5—C6—H6 | 120.6 (7) |
C7—N1—H1N | 117.3 (7) | C1—C6—H6 | 118.3 (7) |
C2—C1—C6 | 118.04 (10) | N1—C7—C1 | 111.11 (8) |
C2—C1—C7 | 120.70 (9) | N1—C7—H17 | 108.9 (6) |
C6—C1—C7 | 121.26 (9) | C1—C7—H17 | 110.3 (6) |
C3—C2—C1 | 120.92 (10) | N1—C7—H27 | 107.8 (6) |
C3—C2—H2 | 121.0 (7) | C1—C7—H27 | 112.2 (6) |
C1—C2—H2 | 118.0 (7) | H17—C7—H27 | 106.3 (9) |
C4—C3—C2 | 120.15 (11) | O1—C8—N1 | 122.90 (9) |
C4—C3—H3 | 119.9 (7) | O1—C8—C9 | 120.84 (8) |
C2—C3—H3 | 120.0 (7) | N1—C8—C9 | 116.25 (8) |
C3—C4—C5 | 119.73 (11) | C8—C9—H9A | 109.5 |
C3—C4—H4 | 122.2 (8) | C8—C9—H9B | 109.5 |
C5—C4—H4 | 118.0 (8) | H9A—C9—H9B | 109.5 |
C6—C5—C4 | 120.15 (12) | C8—C9—H9C | 109.5 |
C6—C5—H5 | 118.8 (8) | H9A—C9—H9C | 109.5 |
C4—C5—H5 | 121.1 (8) | H9B—C9—H9C | 109.5 |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O1i | 0.90 (1) | 2.02 (1) | 2.906 (1) | 168.7 (9) |
Symmetry code: (i) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C9H11NO |
Mr | 149.19 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 298 |
a, b, c (Å) | 4.8383 (10), 14.906 (3), 11.663 (2) |
β (°) | 100.04 (3) |
V (Å3) | 828.3 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.60 × 0.12 × 0.01 |
Data collection | |
Diffractometer | Oxford Diffraction KM-4 CCD Sapphire3 |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7651, 2718, 1377 |
Rint | 0.017 |
(sin θ/λ)max (Å−1) | 0.761 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.096, 1.00 |
No. of reflections | 2718 |
No. of parameters | 133 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.18, −0.18 |
Computer programs: CrysAlis CCD (Oxford Diffraction, 2007), CrysAlis CCD, CrysAlis RED (Oxford Diffraction, 2007), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), ORTEP-3 (Farrugia, 1997), publCIF (Westrip, 2007).
N1—C8 | 1.3305 (12) | C2—C3 | 1.3831 (16) |
N1—C7 | 1.4544 (13) | C3—C4 | 1.3674 (16) |
O1—C8 | 1.2325 (10) | C4—C5 | 1.3786 (18) |
C1—C2 | 1.3845 (14) | C5—C6 | 1.3747 (16) |
C1—C6 | 1.3863 (14) | C6—H6 | 0.940 (11) |
C1—C7 | 1.5046 (14) | C8—C9 | 1.4976 (14) |
C8—N1—C7 | 122.45 (8) | C6—C5—C4 | 120.15 (12) |
C2—C1—C6 | 118.04 (10) | C5—C6—C1 | 121.00 (11) |
C2—C1—C7 | 120.70 (9) | N1—C7—C1 | 111.11 (8) |
C6—C1—C7 | 121.26 (9) | O1—C8—N1 | 122.90 (9) |
C3—C2—C1 | 120.92 (10) | O1—C8—C9 | 120.84 (8) |
C4—C3—C2 | 120.15 (11) | N1—C8—C9 | 116.25 (8) |
C3—C4—C5 | 119.73 (11) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O1i | 0.90 (1) | 2.02 (1) | 2.906 (1) | 168.7 (9) |
Symmetry code: (i) x+1, y, z. |
We report here the synthesis, isolation of single crystals and structure determination of N-benzylacetamide, (I).
The title compound is subject of our study of a generation mechanism of IR spectra of hydrogen-bonded molecular crystals (Flakus & Michta, 2004, 2005; Flakus et al., 2007; Flakus, Tyl & Jones, 2003; Flakus & Pyzik, 2006). The spectral studies were preceded by determination of the crystal X-ray structure. Measurement of the IR spectra and theoretical analysis of the results concerned e.g. the linear dichroic effects, the H/D isotopic and temperature effects, observed in the solid-state IR spectra of the hydrogen and of the deuterium bond at the frequency ranges of the νN—H and νN—D bands, respectively. Some spectacular effects are especially visible for those systems, where the proton-acceptor atom is oxygen (Flakus & Michta, 2003).
The structure of (I) with the atomic numbering scheme is presented in Fig. 1. Molecules of (I) are interconnected by a framework of intermolecular N—H···O hydrogen bonds, viz. N1—H1N···O1, respectively, as shown in Fig. 2 and detailed in Table 1. The Fig. 2 also shows that in the crystal structure of (I) the molecules interact via N—H···O hydrogen bonds, forming infinite chains perpendicular to the b axis. The values of the H—A and D···A distances and the D—H···A angle (Table 1) characterize this bond as a weak hydrogen bond (Desiraju & Steiner, 1999), and agree with relevant data for N-benzylacetamide forming intermolecular N—H···O hydrogen bonds [D···A = 2.90 (12) Å and D—H···A = 168.7 (9)°]. The weakening of the intermolecular hydrogen bond in (I) is supported by IR spectroscopic data. The band of the isolated N—H stretching vibration, νN—H, was located in the 3400–3100 cm-1 frequency range.