The title polymeric compound, {[Co(C
4O
4)(C
6H
6N
2O)
2(H
2O)
2]·2H
2O}
n, has two crystallographically independent half-molecules in the asymmetric unit, each Co atom residing on a center of symmetry. The two polymeric chains exhibit similar coordination geometry but display differences with regard to other structural features. Each Co
II center is octahedrally coordinated by two mutually
trans pyridine-4-carboxamide (or isonicotinamide) ligands, two mutually
trans squarate ligands and two
trans aqua ligands. The crystal structure contains chains of squarate-1,3-bridged Co
II ions. These chains are held together by N—H
O and O—H
O intermolecular hydrogen-bond interactions, forming an extensive three-dimensional network.
Supporting information
CCDC reference: 277187
Key indicators
- Single-crystal X-ray study
- T = 297 K
- Mean (C-C) = 0.006 Å
- R factor = 0.056
- wR factor = 0.164
- Data-to-parameter ratio = 13.6
checkCIF/PLATON results
No syntax errors found
Alert level C
PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ?
0 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
1 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
0 ALERT type 2 Indicator that the structure model may be wrong or deficient
0 ALERT type 3 Indicator that the structure quality may be low
0 ALERT type 4 Improvement, methodology, query or suggestion
Data collection: X-AREA (Stoe & Cie, 2002); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Poly[[[diaquabis(pyridine-4-carboxamide-
κN1)cobalt(II)]-µ
2–
squarato-
κO:
O'] dihydrate]
top
Crystal data top
[Co(C4O4)(C6H6N2O)2(H2O)2]·2H2O | Z = 2 |
Mr = 487.29 | F(000) = 502 |
Triclinic, P1 | Dx = 1.622 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.1578 (8) Å | Cell parameters from 5876 reflections |
b = 10.8246 (12) Å | θ = 2.3–27.3° |
c = 12.1665 (11) Å | µ = 0.92 mm−1 |
α = 75.445 (8)° | T = 297 K |
β = 89.690 (8)° | Prism, pink |
γ = 74.082 (8)° | 0.3 × 0.2 × 0.1 mm |
V = 997.68 (17) Å3 | |
Data collection top
Stoe IPDS-II diffractometer | 4333 independent reflections |
Radiation source: fine-focus sealed tube | 3003 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.064 |
Detector resolution: 6.67 pixels mm-1 | θmax = 27.0°, θmin = 2.3° |
ω scans | h = −10→10 |
Absorption correction: integration (X-RED32; Stoe & Cie, 2002) | k = −13→13 |
Tmin = 0.710, Tmax = 0.899 | l = −15→15 |
20174 measured reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.056 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.164 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.1027P)2] where P = (Fo2 + 2Fc2)/3 |
4333 reflections | (Δ/σ)max = 0.017 |
319 parameters | Δρmax = 1.12 e Å−3 |
17 restraints | Δρmin = −0.81 e Å−3 |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Co1 | 0.5000 | 0.5000 | 0.5000 | 0.02440 (19) | |
Co2 | 0.0000 | 0.5000 | 0.0000 | 0.02526 (19) | |
C1 | 0.7041 (5) | 0.2259 (4) | 0.4716 (4) | 0.0459 (10) | |
H1 | 0.7484 | 0.2781 | 0.4131 | 0.055* | |
C2 | 0.7604 (6) | 0.0896 (4) | 0.4909 (4) | 0.0504 (11) | |
H2 | 0.8409 | 0.0517 | 0.4456 | 0.060* | |
C3 | 0.6978 (5) | 0.0093 (4) | 0.5771 (3) | 0.0396 (9) | |
C4 | 0.5784 (6) | 0.0713 (4) | 0.6417 (4) | 0.0485 (10) | |
H4 | 0.5325 | 0.0210 | 0.7007 | 0.058* | |
C5 | 0.5280 (6) | 0.2085 (4) | 0.6176 (4) | 0.0474 (10) | |
H5 | 0.4481 | 0.2487 | 0.6620 | 0.057* | |
C6 | 0.7645 (6) | −0.1387 (5) | 0.5972 (4) | 0.0503 (10) | |
C7 | 0.8808 (4) | 0.5051 (4) | 0.4691 (3) | 0.0306 (7) | |
C8 | 0.9578 (4) | 0.4929 (4) | 0.5799 (3) | 0.0307 (7) | |
C9 | 0.2130 (5) | 0.2242 (4) | −0.0206 (4) | 0.0481 (10) | |
H9 | 0.2678 | 0.2758 | −0.0724 | 0.058* | |
C10 | 0.2665 (6) | 0.0875 (5) | −0.0025 (4) | 0.0520 (11) | |
H10 | 0.3552 | 0.0487 | −0.0422 | 0.062* | |
C11 | 0.1879 (5) | 0.0079 (4) | 0.0748 (3) | 0.0392 (9) | |
C12 | 0.0584 (5) | 0.0715 (4) | 0.1318 (4) | 0.0467 (10) | |
H12 | 0.0042 | 0.0223 | 0.1861 | 0.056* | |
C13 | 0.0100 (5) | 0.2074 (4) | 0.1077 (4) | 0.0459 (10) | |
H13 | −0.0805 | 0.2482 | 0.1450 | 0.055* | |
C14 | 0.2468 (6) | −0.1394 (4) | 0.0919 (4) | 0.0476 (10) | |
C15 | 0.3817 (4) | 0.4992 (4) | 0.0308 (3) | 0.0321 (8) | |
C16 | 0.4442 (4) | 0.5358 (4) | −0.0811 (3) | 0.0327 (8) | |
N1 | 0.5883 (4) | 0.2862 (3) | 0.5338 (3) | 0.0343 (7) | |
N2 | 0.7076 (6) | −0.2149 (4) | 0.6823 (4) | 0.0619 (11) | |
H2A | 0.627 (6) | −0.191 (6) | 0.729 (5) | 0.093* | |
H2B | 0.744 (7) | −0.305 (3) | 0.696 (5) | 0.093* | |
N3 | 0.0852 (4) | 0.2850 (3) | 0.0337 (3) | 0.0357 (7) | |
N4 | 0.1635 (6) | −0.2128 (4) | 0.1617 (4) | 0.0591 (10) | |
H4A | 0.100 (7) | −0.188 (5) | 0.215 (4) | 0.089* | |
H4B | 0.225 (7) | −0.295 (3) | 0.189 (5) | 0.089* | |
O1 | 0.5814 (3) | 0.4837 (3) | 0.6642 (2) | 0.0419 (7) | |
H1A | 0.680 (4) | 0.493 (5) | 0.677 (4) | 0.063* | |
H1B | 0.512 (5) | 0.512 (5) | 0.713 (4) | 0.063* | |
O2 | 0.7364 (3) | 0.5100 (3) | 0.4288 (2) | 0.0364 (6) | |
O3 | 0.9030 (3) | 0.4853 (3) | 0.6776 (2) | 0.0462 (8) | |
O4 | 0.8722 (6) | −0.1858 (4) | 0.5367 (4) | 0.0806 (12) | |
O5 | 0.2410 (3) | 0.4965 (3) | 0.0716 (2) | 0.0408 (7) | |
O6 | 0.3778 (3) | 0.5832 (3) | −0.1820 (2) | 0.0460 (7) | |
O7 | 0.0849 (3) | 0.5145 (3) | −0.1597 (2) | 0.0443 (7) | |
H7A | 0.168 (5) | 0.538 (5) | −0.193 (4) | 0.066* | |
H7B | 0.014 (5) | 0.500 (5) | −0.206 (4) | 0.066* | |
O8 | 0.3681 (5) | −0.1891 (4) | 0.0405 (4) | 0.0663 (10) | |
O9 | 0.6108 (6) | 0.1406 (5) | 0.1938 (4) | 0.0769 (11) | |
H9A | 0.600 (10) | 0.143 (8) | 0.125 (4) | 0.115* | |
H9B | 0.611 (10) | 0.216 (5) | 0.200 (7) | 0.115* | |
O10 | 0.1339 (8) | 0.1341 (6) | 0.7033 (5) | 0.1021 (16) | |
H10A | 0.066 (11) | 0.150 (10) | 0.643 (6) | 0.153* | |
H10B | 0.207 (10) | 0.058 (6) | 0.722 (8) | 0.153* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Co1 | 0.0170 (3) | 0.0354 (4) | 0.0235 (3) | −0.0100 (2) | 0.0027 (2) | −0.0096 (3) |
Co2 | 0.0179 (3) | 0.0386 (4) | 0.0235 (3) | −0.0119 (3) | 0.0032 (2) | −0.0114 (3) |
C1 | 0.049 (2) | 0.042 (2) | 0.048 (2) | −0.0149 (19) | 0.0195 (19) | −0.0121 (19) |
C2 | 0.053 (2) | 0.037 (2) | 0.060 (3) | −0.0098 (19) | 0.025 (2) | −0.015 (2) |
C3 | 0.0361 (19) | 0.034 (2) | 0.047 (2) | −0.0079 (16) | 0.0046 (17) | −0.0095 (17) |
C4 | 0.050 (2) | 0.040 (2) | 0.053 (3) | −0.0133 (19) | 0.019 (2) | −0.0080 (19) |
C5 | 0.050 (2) | 0.039 (2) | 0.053 (3) | −0.0112 (19) | 0.0221 (19) | −0.0138 (19) |
C6 | 0.050 (2) | 0.039 (3) | 0.061 (3) | −0.009 (2) | 0.008 (2) | −0.015 (2) |
C7 | 0.0219 (15) | 0.037 (2) | 0.0360 (19) | −0.0111 (14) | −0.0002 (13) | −0.0127 (15) |
C8 | 0.0265 (16) | 0.041 (2) | 0.0289 (17) | −0.0147 (15) | 0.0024 (13) | −0.0117 (15) |
C9 | 0.042 (2) | 0.040 (2) | 0.059 (3) | −0.0089 (18) | 0.0212 (19) | −0.010 (2) |
C10 | 0.044 (2) | 0.050 (3) | 0.062 (3) | −0.010 (2) | 0.023 (2) | −0.018 (2) |
C11 | 0.0343 (18) | 0.042 (2) | 0.041 (2) | −0.0121 (17) | 0.0039 (16) | −0.0104 (17) |
C12 | 0.046 (2) | 0.045 (3) | 0.049 (2) | −0.0152 (19) | 0.0197 (18) | −0.0103 (19) |
C13 | 0.044 (2) | 0.043 (3) | 0.054 (2) | −0.0154 (19) | 0.0225 (19) | −0.016 (2) |
C14 | 0.047 (2) | 0.042 (3) | 0.052 (3) | −0.0082 (19) | 0.0044 (19) | −0.012 (2) |
C15 | 0.0235 (15) | 0.045 (2) | 0.0342 (19) | −0.0143 (15) | 0.0044 (14) | −0.0165 (16) |
C16 | 0.0257 (16) | 0.049 (2) | 0.0300 (17) | −0.0160 (15) | 0.0008 (13) | −0.0154 (16) |
N1 | 0.0328 (15) | 0.0385 (18) | 0.0325 (16) | −0.0110 (13) | 0.0060 (12) | −0.0097 (13) |
N2 | 0.071 (3) | 0.039 (2) | 0.073 (3) | −0.015 (2) | 0.024 (2) | −0.012 (2) |
N3 | 0.0276 (14) | 0.0423 (19) | 0.0406 (17) | −0.0109 (13) | 0.0074 (13) | −0.0158 (14) |
N4 | 0.064 (3) | 0.041 (2) | 0.063 (3) | −0.0093 (19) | 0.018 (2) | −0.0041 (19) |
O1 | 0.0247 (12) | 0.073 (2) | 0.0349 (14) | −0.0166 (13) | 0.0042 (10) | −0.0238 (13) |
O2 | 0.0206 (11) | 0.0637 (18) | 0.0304 (13) | −0.0198 (11) | 0.0010 (9) | −0.0133 (12) |
O3 | 0.0326 (13) | 0.092 (2) | 0.0262 (13) | −0.0318 (14) | 0.0069 (11) | −0.0220 (14) |
O4 | 0.086 (3) | 0.042 (2) | 0.104 (3) | −0.0033 (18) | 0.050 (2) | −0.019 (2) |
O5 | 0.0210 (11) | 0.075 (2) | 0.0333 (13) | −0.0205 (12) | 0.0045 (10) | −0.0192 (13) |
O6 | 0.0283 (13) | 0.083 (2) | 0.0294 (13) | −0.0206 (13) | 0.0020 (10) | −0.0135 (14) |
O7 | 0.0331 (14) | 0.082 (2) | 0.0307 (14) | −0.0298 (14) | 0.0070 (11) | −0.0227 (14) |
O8 | 0.059 (2) | 0.049 (2) | 0.083 (3) | −0.0040 (16) | 0.0272 (18) | −0.0146 (18) |
O9 | 0.089 (3) | 0.069 (3) | 0.077 (3) | −0.032 (2) | 0.034 (2) | −0.015 (2) |
O10 | 0.108 (4) | 0.102 (4) | 0.096 (4) | −0.032 (3) | 0.050 (3) | −0.023 (3) |
Geometric parameters (Å, º) top
Co1—O1 | 2.058 (2) | C10—C11 | 1.388 (6) |
Co1—O2 | 2.128 (2) | C10—H10 | 0.9300 |
Co1—N1 | 2.158 (3) | C11—C12 | 1.379 (6) |
Co2—O7 | 2.042 (3) | C11—C14 | 1.495 (6) |
Co2—O5 | 2.141 (2) | C12—C13 | 1.368 (6) |
Co2—N3 | 2.169 (3) | C12—H12 | 0.9300 |
C1—N1 | 1.339 (5) | C13—N3 | 1.337 (5) |
C1—C2 | 1.378 (6) | C13—H13 | 0.9300 |
C1—H1 | 0.9300 | C14—O8 | 1.237 (5) |
C2—C3 | 1.377 (6) | C14—N4 | 1.328 (6) |
C2—H2 | 0.9300 | C15—O5 | 1.253 (4) |
C3—C4 | 1.383 (6) | C15—C16 | 1.450 (5) |
C3—C6 | 1.500 (6) | C16—O6 | 1.266 (4) |
C4—C5 | 1.382 (6) | N2—H2A | 0.89 (3) |
C4—H4 | 0.9300 | N2—H2B | 0.91 (3) |
C5—N1 | 1.333 (5) | N4—H4A | 0.88 (3) |
C5—H5 | 0.9300 | N4—H4B | 0.88 (3) |
C6—O4 | 1.229 (6) | O1—H1A | 0.86 (3) |
C6—N2 | 1.321 (6) | O1—H1B | 0.87 (3) |
C7—O2 | 1.261 (4) | O7—H7A | 0.86 (3) |
C7—C8 | 1.451 (4) | O7—H7B | 0.88 (3) |
C8—O3 | 1.258 (4) | O9—H9A | 0.83 (4) |
C9—N3 | 1.339 (5) | O9—H9B | 0.84 (4) |
C9—C10 | 1.383 (6) | O10—H10A | 0.87 (4) |
C9—H9 | 0.9300 | O10—H10B | 0.85 (4) |
| | | |
O1—Co1—O2 | 95.67 (10) | C10—C11—C14 | 119.0 (4) |
O1—Co1—N1 | 88.96 (12) | C13—C12—C11 | 119.6 (4) |
O2—Co1—N1 | 88.80 (11) | C13—C12—H12 | 120.2 |
O7—Co2—O5 | 92.92 (10) | C11—C12—H12 | 120.2 |
O7—Co2—N3 | 89.31 (13) | N3—C13—C12 | 123.9 (4) |
O5—Co2—N3 | 89.46 (11) | N3—C13—H13 | 118.1 |
N1—C1—C2 | 122.7 (4) | C12—C13—H13 | 118.1 |
N1—C1—H1 | 118.7 | O8—C14—N4 | 122.2 (4) |
C2—C1—H1 | 118.7 | O8—C14—C11 | 119.9 (4) |
C3—C2—C1 | 120.2 (4) | N4—C14—C11 | 117.9 (4) |
C3—C2—H2 | 119.9 | O5—C15—C16 | 137.2 (3) |
C1—C2—H2 | 119.9 | O6—C16—C15 | 135.7 (3) |
C2—C3—C4 | 117.3 (4) | C5—N1—C1 | 117.2 (3) |
C2—C3—C6 | 118.7 (4) | C5—N1—Co1 | 121.0 (3) |
C4—C3—C6 | 124.0 (4) | C1—N1—Co1 | 121.8 (3) |
C5—C4—C3 | 119.4 (4) | C6—N2—H2A | 129 (4) |
C5—C4—H4 | 120.3 | C6—N2—H2B | 121 (4) |
C3—C4—H4 | 120.3 | H2A—N2—H2B | 111 (4) |
N1—C5—C4 | 123.2 (4) | C13—N3—C9 | 117.0 (4) |
N1—C5—H5 | 118.4 | C13—N3—Co2 | 121.6 (3) |
C4—C5—H5 | 118.4 | C9—N3—Co2 | 121.4 (3) |
O4—C6—N2 | 121.8 (4) | C14—N4—H4A | 125 (4) |
O4—C6—C3 | 119.9 (4) | C14—N4—H4B | 113 (4) |
N2—C6—C3 | 118.3 (4) | H4A—N4—H4B | 108 (4) |
O2—C7—C8 | 136.8 (3) | Co1—O1—H1A | 119 (3) |
O3—C8—C7 | 134.0 (3) | Co1—O1—H1B | 123 (3) |
N3—C9—C10 | 122.3 (4) | H1A—O1—H1B | 109 (4) |
N3—C9—H9 | 118.8 | C7—O2—Co1 | 134.2 (2) |
C10—C9—H9 | 118.8 | C15—O5—Co2 | 133.2 (2) |
C9—C10—C11 | 120.1 (4) | Co2—O7—H7A | 135 (3) |
C9—C10—H10 | 119.9 | Co2—O7—H7B | 112 (3) |
C11—C10—H10 | 119.9 | H7A—O7—H7B | 113 (4) |
C12—C11—C10 | 117.1 (4) | H9A—O9—H9B | 109 (8) |
C12—C11—C14 | 123.9 (4) | H10A—O10—H10B | 116 (9) |
| | | |
N1—C1—C2—C3 | −0.1 (7) | C4—C5—N1—C1 | −0.5 (6) |
C1—C2—C3—C4 | 0.0 (7) | C4—C5—N1—Co1 | 179.0 (3) |
C1—C2—C3—C6 | −178.8 (4) | C2—C1—N1—C5 | 0.4 (6) |
C2—C3—C4—C5 | −0.1 (6) | C2—C1—N1—Co1 | −179.1 (3) |
C6—C3—C4—C5 | 178.6 (4) | O1—Co1—N1—C5 | 58.4 (3) |
C3—C4—C5—N1 | 0.3 (7) | O2—Co1—N1—C5 | 154.1 (3) |
C2—C3—C6—O4 | −0.4 (7) | O1—Co1—N1—C1 | −122.1 (3) |
C4—C3—C6—O4 | −179.1 (5) | O2—Co1—N1—C1 | −26.4 (3) |
C2—C3—C6—N2 | 177.9 (5) | C12—C13—N3—C9 | 1.3 (6) |
C4—C3—C6—N2 | −0.8 (7) | C12—C13—N3—Co2 | 179.8 (3) |
O2—C7—C8—O3 | −1.7 (8) | C10—C9—N3—C13 | 0.2 (6) |
N3—C9—C10—C11 | −0.4 (7) | C10—C9—N3—Co2 | −178.3 (3) |
C9—C10—C11—C12 | −0.7 (7) | O7—Co2—N3—C13 | −151.9 (3) |
C9—C10—C11—C14 | 179.3 (4) | O5—Co2—N3—C13 | 115.1 (3) |
C10—C11—C12—C13 | 2.0 (6) | O7—Co2—N3—C9 | 26.5 (3) |
C14—C11—C12—C13 | −178.0 (4) | O5—Co2—N3—C9 | −66.4 (3) |
C11—C12—C13—N3 | −2.4 (7) | C8—C7—O2—Co1 | −1.3 (7) |
C12—C11—C14—O8 | −177.4 (4) | O1—Co1—O2—C7 | 1.4 (4) |
C10—C11—C14—O8 | 2.7 (6) | N1—Co1—O2—C7 | −87.4 (4) |
C12—C11—C14—N4 | 3.5 (6) | C16—C15—O5—Co2 | 18.1 (7) |
C10—C11—C14—N4 | −176.4 (4) | O7—Co2—O5—C15 | −1.5 (4) |
O5—C15—C16—O6 | 2.2 (8) | N3—Co2—O5—C15 | 87.8 (4) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1A···O3 | 0.86 (3) | 1.80 (3) | 2.635 (4) | 165 (5) |
O1—H1B···O6i | 0.87 (3) | 1.85 (3) | 2.723 (4) | 174 (5) |
N2—H2A···O9ii | 0.89 (3) | 2.15 (3) | 3.015 (6) | 164 (6) |
N2—H2B···O3iii | 0.91 (3) | 2.35 (3) | 3.214 (5) | 158 (5) |
N4—H4A···O10iv | 0.88 (3) | 2.15 (4) | 2.973 (7) | 155 (6) |
N4—H4B···O1ii | 0.88 (3) | 2.50 (4) | 3.316 (5) | 155 (5) |
O7—H7A···O6 | 0.86 (3) | 1.91 (3) | 2.684 (4) | 149 (5) |
O7—H7B···O3v | 0.88 (3) | 1.75 (3) | 2.613 (3) | 166 (5) |
O9—H9A···O8vi | 0.83 (4) | 1.98 (5) | 2.779 (6) | 159 (8) |
O9—H9B···O6vii | 0.84 (4) | 2.16 (4) | 2.984 (6) | 170 (8) |
O10—H10A···O4ii | 0.87 (4) | 2.21 (9) | 2.829 (7) | 128 (9) |
O10—H10B···O9ii | 0.85 (4) | 2.24 (4) | 3.083 (8) | 169 (10) |
Symmetry codes: (i) x, y, z+1; (ii) −x+1, −y, −z+1; (iii) x, y−1, z; (iv) −x, −y, −z+1; (v) x−1, y, z−1; (vi) −x+1, −y, −z; (vii) −x+1, −y+1, −z. |