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In the crystal structure of the title compound, [Cd(NO3)(C7H6N2)(C12H8N2)(H2O)2]NO3, the phenanthroline-chelated Cd atom is bonded to the benz­imidazole, two water mol­ecules and a monodentate nitrate group in a six-coordinate octahedral geometry. The cation interacts with the nitrate anion to form a three-dimensional hydrogen-bonding network.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536805014388/ac6173sup1.cif
Contains datablocks I, global

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S1600536805014388/ac6173Isup2.hkl
Contains datablock I

CCDC reference: 274318

Key indicators

  • Single-crystal X-ray study
  • T = 295 K
  • Mean [sigma](C-C) = 0.008 Å
  • R factor = 0.046
  • wR factor = 0.137
  • Data-to-parameter ratio = 15.1

checkCIF/PLATON results

No syntax errors found



Alert level A ABSTM02_ALERT_3_A The ratio of expected to reported Tmax/Tmin(RR') is < 0.50 Tmin and Tmax reported: 0.336 0.808 Tmin' and Tmax expected: 0.707 0.800 RR' = 0.471 Please check that your absorption correction is appropriate.
Author Response: The range is given by SADABS. SADABS corrects for more than absorption; some authors retain the transmission factors given by SHELXL-97 whereas others use the values given by SADABS.
PLAT061_ALERT_3_A Tmax/Tmin Range Test RR' too Large .............       0.46
Author Response: Same as above.

Alert level B PLAT242_ALERT_2_B Check Low Ueq as Compared to Neighbors for N5 PLAT731_ALERT_1_B Bond Calc 0.85(5), Rep 0.840(10) ...... 5.00 su-Rat O2W -H2W1 1.555 1.555 PLAT735_ALERT_1_B D-H Calc 0.85(5), Rep 0.843(10) ...... 5.00 su-Rat O2W -H3# 1.555 1.555
Alert level C PLAT029_ALERT_3_C _diffrn_measured_fraction_theta_full Low ....... 0.97 PLAT232_ALERT_2_C Hirshfeld Test Diff (M-X) Cd1 - O1 .. 5.59 su PLAT232_ALERT_2_C Hirshfeld Test Diff (M-X) Cd1 - N1 .. 5.07 su PLAT241_ALERT_2_C Check High Ueq as Compared to Neighbors for O1 PLAT244_ALERT_4_C Low 'Solvent' Ueq as Compared to Neighbors for N6 PLAT720_ALERT_4_C Number of Unusual/Non-Standard Label(s) ........ 4 PLAT731_ALERT_1_C Bond Calc 0.85(4), Rep 0.850(10) ...... 4.00 su-Rat O1W -H1W1 1.555 1.555 PLAT731_ALERT_1_C Bond Calc 0.85(3), Rep 0.850(10) ...... 3.00 su-Rat O1W -H1W2 1.555 1.555 PLAT731_ALERT_1_C Bond Calc 0.85(4), Rep 0.850(10) ...... 4.00 su-Rat N4 -H4N 1.555 1.555 PLAT732_ALERT_1_C Angle Calc 109(5), Rep 110(2) ...... 2.50 su-Rat H1W1 -O1W -H1W2 1.555 1.555 1.555 PLAT732_ALERT_1_C Angle Calc 111(5), Rep 111(2) ...... 2.50 su-Rat H2W1 -O2W -H2W2 1.555 1.555 1.555 PLAT735_ALERT_1_C D-H Calc 0.85(4), Rep 0.848(10) ...... 4.00 su-Rat O1W -H1# 1.555 1.555 PLAT735_ALERT_1_C D-H Calc 0.85(3), Rep 0.849(10) ...... 3.00 su-Rat O1W -H2# 1.555 1.555 PLAT735_ALERT_1_C D-H Calc 0.85(4), Rep 0.848(10) ...... 4.00 su-Rat N4 -H4N 1.555 1.555 PLAT736_ALERT_1_C H...A Calc 1.87(4), Rep 1.873(13) ...... 3.08 su-Rat H1# -O4 1.555 1.555 PLAT736_ALERT_1_C H...A Calc 1.98(4), Rep 1.975(12) ...... 3.33 su-Rat H2# -O2 1.555 1.655 PLAT736_ALERT_1_C H...A Calc 1.95(5), Rep 1.96(2) ...... 2.50 su-Rat H3# -O6 1.555 2.646
2 ALERT level A = In general: serious problem 3 ALERT level B = Potentially serious problem 17 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 13 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 4 ALERT type 2 Indicator that the structure model may be wrong or deficient 3 ALERT type 3 Indicator that the structure quality may be low 2 ALERT type 4 Improvement, methodology, query or suggestion

Computing details top

Data collection: SMART (Bruker, 2002); cell refinement: SAINT (Bruker, 2002); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL(Bruker, 2002); software used to prepare material for publication: SHELXL97.

Diaqua(benzimidazole)(nitrato-κO)(1,10-phenanthroline)cadmium(II) nitrate top
Crystal data top
[Cd(NO3)(C7H6N2)(C12H8N2)(H2O)2]NO3F(000) = 1144
Mr = 570.79Dx = 1.740 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 5541 reflections
a = 7.5119 (4) Åθ = 2.4–26.8°
b = 16.9551 (9) ŵ = 1.06 mm1
c = 17.1127 (9) ÅT = 295 K
β = 90.821 (1)°Block, colorless
V = 2179.3 (2) Å30.32 × 0.24 × 0.21 mm
Z = 4
Data collection top
Bruker APEX area-detector
diffractometer
4878 independent reflections
Radiation source: fine-focus sealed tube4191 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
φ and ω scansθmax = 27.5°, θmin = 1.2°
Absorption correction: multi-scan
(SADABS; Bruker, 2002)
h = 89
Tmin = 0.336, Tmax = 0.808k = 1921
13046 measured reflectionsl = 1721
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.137H atoms treated by a mixture of independent and constrained refinement
S = 1.13 w = 1/[σ2(Fo2) + (0.0611P)2 + 2.947P]
where P = (Fo2 + 2Fc2)/3
4878 reflections(Δ/σ)max = 0.001
322 parametersΔρmax = 0.80 e Å3
7 restraintsΔρmin = 0.85 e Å3
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Cd10.54630 (4)0.67756 (1)0.69828 (2)0.0452 (1)
O10.3504 (5)0.5655 (2)0.7025 (3)0.075 (1)
O20.1671 (6)0.6606 (3)0.7049 (3)0.075 (1)
O30.0748 (6)0.5416 (3)0.7013 (5)0.136 (3)
O40.8622 (7)0.8573 (2)0.6032 (2)0.082 (1)
O50.8772 (8)0.9804 (3)0.5901 (4)0.114 (2)
O60.8646 (8)0.9286 (3)0.7047 (3)0.102 (2)
O1w0.8304 (5)0.7347 (2)0.7042 (2)0.060 (1)
O2w0.7181 (5)0.5651 (2)0.7141 (3)0.072 (1)
N10.5623 (5)0.6651 (2)0.5622 (2)0.051 (1)
N20.4344 (5)0.7931 (2)0.6401 (2)0.051 (1)
N30.5119 (5)0.7014 (2)0.8263 (2)0.050 (1)
N40.4595 (6)0.6739 (2)0.9496 (2)0.056 (1)
N50.1949 (5)0.5893 (3)0.7032 (3)0.061 (1)
N60.8654 (6)0.9238 (2)0.6336 (3)0.057 (1)
C10.6176 (8)0.6026 (3)0.5233 (4)0.069 (1)
C20.6329 (9)0.6013 (4)0.4418 (4)0.084 (2)
C30.5905 (9)0.6664 (4)0.4010 (4)0.079 (2)
C40.5321 (7)0.7332 (4)0.4396 (3)0.059 (1)
C50.4842 (9)0.8043 (4)0.3991 (3)0.073 (2)
C60.4217 (8)0.8669 (4)0.4375 (4)0.073 (2)
C70.4019 (7)0.8650 (3)0.5194 (3)0.058 (1)
C80.3304 (9)0.9283 (3)0.5622 (4)0.078 (2)
C90.3113 (9)0.9222 (4)0.6406 (4)0.080 (2)
C100.3650 (8)0.8533 (4)0.6781 (3)0.066 (1)
C110.4525 (6)0.7966 (3)0.5619 (3)0.046 (1)
C120.5193 (6)0.7302 (3)0.5208 (3)0.050 (1)
C130.4597 (7)0.6481 (3)0.8766 (3)0.054 (1)
C140.5529 (6)0.7674 (3)0.8714 (2)0.044 (1)
C150.5186 (6)0.7506 (3)0.9495 (2)0.048 (1)
C160.5454 (8)0.8044 (4)1.0096 (3)0.065 (1)
C170.6062 (8)0.8771 (4)0.9871 (4)0.074 (2)
C180.6409 (8)0.8954 (3)0.9096 (4)0.068 (1)
C190.6169 (7)0.8406 (3)0.8507 (3)0.057 (1)
H1w10.832 (6)0.774 (2)0.673 (3)0.072*
H1w20.931 (4)0.712 (3)0.704 (3)0.072*
H2w10.672 (6)0.528 (3)0.740 (3)0.086*
H2w20.830 (2)0.561 (3)0.713 (4)0.086*
H4n0.411 (7)0.650 (3)0.987 (2)0.067*
H10.64770.55740.55120.083*
H20.67190.55610.41640.100*
H30.60030.66670.34690.095*
H50.49670.80690.34520.088*
H60.39100.91230.41000.088*
H80.29630.97440.53650.094*
H90.26280.96350.66900.096*
H100.35150.84940.73190.079*
H130.42610.59720.86240.064*
H160.52370.79201.06150.078*
H170.62490.91561.02500.089*
H180.68110.94570.89720.082*
H190.64280.85260.79900.068*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Cd10.0520 (2)0.0449 (2)0.0386 (2)0.0048 (1)0.0009 (1)0.0050 (1)
O10.046 (2)0.069 (2)0.110 (3)0.004 (2)0.004 (2)0.003 (2)
O20.068 (2)0.069 (3)0.086 (3)0.006 (2)0.004 (2)0.005 (2)
O30.048 (2)0.086 (4)0.274 (9)0.013 (2)0.011 (4)0.029 (4)
O40.143 (4)0.052 (2)0.051 (2)0.014 (2)0.026 (2)0.010 (2)
O50.145 (5)0.061 (3)0.134 (5)0.002 (3)0.022 (4)0.041 (3)
O60.164 (5)0.079 (3)0.065 (3)0.003 (3)0.025 (3)0.025 (2)
O1w0.059 (2)0.053 (2)0.068 (2)0.000 (2)0.006 (2)0.016 (2)
O2w0.054 (2)0.056 (2)0.106 (3)0.008 (2)0.017 (2)0.033 (2)
N10.054 (2)0.051 (2)0.049 (2)0.005 (2)0.003 (2)0.001 (2)
N20.052 (2)0.056 (2)0.046 (2)0.008 (2)0.003 (2)0.001 (2)
N30.059 (2)0.049 (2)0.040 (2)0.003 (2)0.001 (2)0.005 (2)
N40.065 (3)0.060 (3)0.043 (2)0.006 (2)0.006 (2)0.016 (2)
N50.046 (2)0.069 (3)0.067 (3)0.002 (2)0.004 (2)0.008 (2)
N60.070 (3)0.042 (2)0.058 (2)0.000 (2)0.007 (2)0.002 (2)
C10.075 (3)0.063 (3)0.069 (3)0.019 (3)0.006 (3)0.008 (3)
C20.079 (4)0.093 (5)0.078 (4)0.013 (4)0.002 (3)0.041 (4)
C30.074 (4)0.108 (5)0.054 (3)0.003 (3)0.006 (3)0.013 (3)
C40.050 (3)0.086 (4)0.042 (2)0.006 (2)0.006 (2)0.002 (2)
C50.082 (4)0.100 (5)0.038 (3)0.009 (3)0.004 (3)0.020 (3)
C60.078 (4)0.075 (4)0.066 (3)0.008 (3)0.015 (3)0.025 (3)
C70.060 (3)0.056 (3)0.057 (3)0.008 (2)0.014 (2)0.015 (2)
C80.089 (4)0.047 (3)0.098 (5)0.005 (3)0.027 (4)0.009 (3)
C90.091 (4)0.060 (3)0.088 (4)0.022 (3)0.023 (4)0.014 (3)
C100.071 (3)0.069 (3)0.058 (3)0.022 (3)0.009 (3)0.006 (3)
C110.044 (2)0.049 (2)0.045 (2)0.005 (2)0.007 (2)0.005 (2)
C120.043 (2)0.060 (3)0.046 (2)0.006 (2)0.005 (2)0.000 (2)
C130.066 (3)0.048 (2)0.048 (3)0.004 (2)0.004 (2)0.005 (2)
C140.045 (2)0.051 (2)0.037 (2)0.002 (2)0.001 (2)0.003 (2)
C150.046 (2)0.062 (3)0.037 (2)0.002 (2)0.001 (2)0.004 (2)
C160.071 (3)0.084 (4)0.040 (2)0.004 (3)0.001 (2)0.006 (2)
C170.085 (4)0.073 (4)0.065 (3)0.000 (3)0.010 (3)0.020 (3)
C180.075 (4)0.059 (3)0.071 (4)0.010 (3)0.003 (3)0.003 (3)
C190.062 (3)0.056 (3)0.053 (3)0.007 (2)0.002 (2)0.007 (2)
Geometric parameters (Å, º) top
Cd1—O12.405 (4)C7—C111.417 (7)
Cd1—O1w2.345 (4)C8—C91.36 (1)
Cd1—O2w2.316 (3)C9—C101.390 (8)
Cd1—N12.343 (4)C11—C121.423 (7)
Cd1—N22.348 (4)C14—C191.380 (7)
Cd1—N32.246 (4)C14—C151.394 (6)
O1—N51.236 (5)C15—C161.387 (7)
O2—N51.226 (6)C16—C171.372 (9)
O3—N51.212 (6)C17—C181.389 (9)
O4—N61.242 (5)C18—C191.382 (8)
O5—N61.220 (6)O1w—H1w10.85 (1)
O6—N61.219 (6)O1w—H1w20.85 (1)
N1—C11.322 (7)O2w—H2w10.84 (1)
N1—C121.349 (6)O2w—H2w20.84 (1)
N2—C101.321 (7)N4—H4n0.85 (1)
N2—C111.348 (6)C1—H10.93
N3—C131.313 (6)C2—H20.93
N3—C141.390 (6)C3—H30.93
N4—C131.323 (7)C5—H50.93
N4—C151.375 (6)C6—H60.93
C1—C21.400 (9)C8—H80.93
C2—C31.34 (1)C9—H90.93
C3—C41.386 (9)C10—H100.93
C4—C121.394 (7)C13—H130.93
C4—C51.434 (8)C16—H160.93
C5—C61.337 (9)C17—H170.93
C6—C71.412 (8)C18—H180.93
C7—C81.411 (8)C19—H190.93
O1—Cd1—O1w151.9 (1)N1—C12—C4122.3 (5)
O1—Cd1—O2w71.7 (1)N1—C12—C11118.1 (4)
O1—Cd1—N189.9 (2)C4—C12—C11119.5 (5)
O1—Cd1—N2117.2 (1)N4—C13—N3113.3 (5)
O1—Cd1—N392.0 (2)C19—C14—N3131.0 (4)
O1w—Cd1—O2w80.2 (1)C19—C14—C15120.0 (4)
O1w—Cd1—N191.2 (1)N3—C14—C15109.0 (4)
O1w—Cd1—N289.7 (1)N4—C15—C16131.6 (4)
O1w—Cd1—N390.0 (1)N4—C15—C14105.0 (4)
O2w—Cd1—N190.3 (2)C16—C15—C14123.4 (5)
O2w—Cd1—N2158.7 (2)C15—C16—C17115.3 (5)
O2w—Cd1—N396.1 (2)C16—C17—C18122.5 (5)
N1—Cd1—N271.2 (1)C19—C18—C17121.5 (5)
N1—Cd1—N3173.6 (1)C18—C19—C14117.4 (5)
N2—Cd1—N3102.6 (1)Cd1—O1w—H1w1108 (4)
N5—O1—Cd1108.7 (3)Cd1—O1w—H1w2128 (4)
C1—N1—C12117.7 (5)H1w1—O1w—H1w2110 (2)
C1—N1—Cd1126.5 (4)Cd1—O2w—H2w1116 (4)
C12—N1—Cd1115.7 (3)Cd1—O2w—H2w2128 (4)
C10—N2—C11120.2 (4)H2w1—O2w—H2w2111 (2)
C10—N2—Cd1125.2 (4)C13—N4—H4n124 (4)
C11—N2—Cd1114.6 (3)C15—N4—H4n127 (4)
C13—N3—C14104.8 (4)N1—C1—H1118.5
C13—N3—Cd1123.7 (3)C2—C1—H1118.5
C14—N3—Cd1131.2 (3)C3—C2—H2120.6
C13—N4—C15107.9 (4)C1—C2—H2120.6
O2—N5—O3122.1 (5)C2—C3—H3120.0
O2—N5—O1118.9 (5)C4—C3—H3120.0
O3—N5—O1119.0 (5)C6—C5—H5119.4
O6—N6—O5123.9 (5)C4—C5—H5119.4
O6—N6—O4118.6 (4)C5—C6—H6119.6
O5—N6—O4117.4 (5)C7—C6—H6119.6
N1—C1—C2123.1 (6)C9—C8—H8120.0
C3—C2—C1118.9 (6)C7—C8—H8120.0
C2—C3—C4119.9 (6)C8—C9—H9120.4
C3—C4—C12118.1 (5)C10—C9—H9120.4
C3—C4—C5122.4 (5)N2—C10—H10118.8
C12—C4—C5119.5 (5)C9—C10—H10118.8
C6—C5—C4121.2 (5)N4—C13—H13123.3
C5—C6—C7120.8 (5)N3—C13—H13123.3
C8—C7—C6122.9 (5)C15—C16—H16122.4
C8—C7—C11117.3 (5)C17—C16—H16122.4
C6—C7—C11119.8 (5)C16—C17—H17118.8
C9—C8—C7120.1 (5)C18—C17—H17118.8
C8—C9—C10119.2 (6)C19—C18—H18119.3
N2—C10—C9122.3 (6)C17—C18—H18119.3
N2—C11—C7120.9 (5)C18—C19—H19121.3
N2—C11—C12119.9 (4)C14—C19—H19121.3
C7—C11—C12119.2 (4)
N3—Cd1—O1—N577.8 (4)C11—C7—C8—C90.4 (9)
O2w—Cd1—O1—N5173.5 (4)C7—C8—C9—C100.8 (10)
N1—Cd1—O1—N596.1 (4)C11—N2—C10—C91.2 (9)
O1w—Cd1—O1—N5171.5 (3)Cd1—N2—C10—C9175.8 (5)
N2—Cd1—O1—N527.5 (4)C8—C9—C10—N20 (1)
O2w—Cd1—N1—C113.2 (5)C10—N2—C11—C71.5 (7)
O1w—Cd1—N1—C193.4 (5)Cd1—N2—C11—C7175.8 (3)
N2—Cd1—N1—C1177.3 (5)C10—N2—C11—C12177.0 (5)
O1—Cd1—N1—C158.5 (5)Cd1—N2—C11—C125.7 (5)
O2w—Cd1—N1—C12163.0 (3)C8—C7—C11—N20.7 (7)
O1w—Cd1—N1—C1282.8 (3)C6—C7—C11—N2179.8 (5)
N2—Cd1—N1—C126.4 (3)C8—C7—C11—C12177.8 (5)
O1—Cd1—N1—C12125.3 (3)C6—C7—C11—C121.3 (7)
N3—Cd1—N2—C102.1 (5)C1—N1—C12—C40.3 (7)
O2w—Cd1—N2—C10153.0 (5)Cd1—N1—C12—C4176.3 (4)
N1—Cd1—N2—C10176.6 (5)C1—N1—C12—C11177.4 (5)
O1w—Cd1—N2—C1092.0 (5)Cd1—N1—C12—C116.1 (5)
O1—Cd1—N2—C1096.8 (5)C3—C4—C12—N10.3 (7)
N3—Cd1—N2—C11175.1 (3)C5—C4—C12—N1180.0 (5)
O2w—Cd1—N2—C1124.2 (6)C3—C4—C12—C11177.3 (5)
N1—Cd1—N2—C116.2 (3)C5—C4—C12—C112.4 (7)
O1w—Cd1—N2—C1185.2 (3)N2—C11—C12—N10.2 (6)
O1—Cd1—N2—C1186.1 (3)C7—C11—C12—N1178.4 (4)
O2w—Cd1—N3—C1350.0 (4)N2—C11—C12—C4177.9 (4)
O1w—Cd1—N3—C13130.2 (4)C7—C11—C12—C40.7 (7)
N2—Cd1—N3—C13140.2 (4)C15—N4—C13—N30.8 (6)
O1—Cd1—N3—C1321.8 (4)C14—N3—C13—N41.3 (6)
O2w—Cd1—N3—C14123.1 (4)Cd1—N3—C13—N4176.0 (3)
O1w—Cd1—N3—C1443.0 (4)C13—N3—C14—C19178.9 (5)
N2—Cd1—N3—C1446.7 (4)Cd1—N3—C14—C194.8 (8)
O1—Cd1—N3—C14165.1 (4)C13—N3—C14—C151.3 (5)
Cd1—O1—N5—O22.9 (6)Cd1—N3—C14—C15175.4 (3)
Cd1—O1—N5—O3176.3 (5)C13—N4—C15—C16179.2 (5)
C12—N1—C1—C20.0 (8)C13—N4—C15—C140.0 (5)
Cd1—N1—C1—C2176.2 (5)C19—C14—C15—N4179.3 (4)
N1—C1—C2—C30 (1)N3—C14—C15—N40.8 (5)
C1—C2—C3—C40 (1)C19—C14—C15—C160.0 (7)
C2—C3—C4—C120.1 (9)N3—C14—C15—C16179.9 (5)
C2—C3—C4—C5179.7 (6)N4—C15—C16—C17179.8 (5)
C3—C4—C5—C6177.4 (6)C14—C15—C16—C171.1 (8)
C12—C4—C5—C62.2 (9)C15—C16—C17—C180.8 (9)
C4—C5—C6—C70.3 (9)C16—C17—C18—C191 (1)
C5—C6—C7—C8177.5 (6)C17—C18—C19—C141.5 (9)
C5—C6—C7—C111.5 (9)N3—C14—C19—C18178.5 (5)
C6—C7—C8—C9178.6 (6)C15—C14—C19—C181.3 (7)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
O1w—H1w1···O40.85 (1)1.87 (1)2.717 (5)173 (5)
O1w—H1w2···O2i0.85 (1)1.98 (1)2.824 (5)179 (6)
O2w—H2w1···O6ii0.84 (1)1.96 (2)2.775 (5)163 (5)
O2w—H2w2···O3i0.84 (1)1.88 (2)2.721 (6)172 (7)
N4—H4n···O4iii0.85 (1)2.03 (3)2.789 (5)149 (5)
Symmetry codes: (i) x+1, y, z; (ii) x+3/2, y1/2, z+3/2; (iii) x1/2, y+3/2, z+1/2.
 

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