Current status of protein micro-crystallography at SPring-8

Protein micro-crystallography is one of the most advanced technologies for protein structure analysis. In order to realize this, an undulator beamline, named BL32XU, was constructed at SPring-8. The beamline can provide beam with size of 0.9 x 0.9 µm and photon flux of 6E10 photons/s. The beam size can be easily changed by users from 1 to 10 µm square with the same flux density. Through three years user operation, we have established several key systems for efficient protein micro-crystallography. One of them is the software for precise positioning of micro-crystals in `raster scan'. SHIKA is a program with GUI which searches diffraction spots in a plenty of low dose diffraction images obtained in raster scan. Finally, it generates 2D map of crystal positions based on the number of spots or spot intensities. Parameters and thresholds in peak search have been empirically optimized for LCP crystals and it provides robust results. Another system is for the data collection strategy. Almost all successful data collections were conducted via `helical data collection' on BL32XU using the line-focused beam. The GUI software, named KUMA, enables estimation of an accumulated dose and suggests suitable experimental conditions for helical data collection. The system is proven to be useful for experimental phasing using tiny LCP crystals of membrane proteins[1-3]. Based on them, the rapid and automatic data collection system using protein micro-crystals is under development. The new CCD detector, Rayonix MX225HS, was installed for faster data acquisition in 10 Hz with the pixel size of 78 µm square. The new SHIKA using GPUs is under development for faster and more accurate crystal alignment. Following this step, KUMA system can suggest experimental conditions for each crystal found on the loop. We also report about the effects of higher dose rate in protein crystallography up to the order of 100 MGy/s. This work was supported by Platform for Drug Discovery, Informatics, and Structural Life Science from the Ministry of Education, Culture, Sports, Science and Technology, Japan.

Processing of Protein Crystals using by Deep-UV Pulsed Laser

The absorption of X-rays which pass through the protein crystal is possibly the largest source of systematic errors in macromolecular crystallography. Therefore we are developing protein crystal processing system using Pulsed UV Laser Soft Ablation (PULSA) technique [1] to reduce the systematic error as well as background scattering from cryoprotectant agents. For high-quality diffraction data collection from organic material, crystals are usually processed to spherical shape in order to keep X-ray path length in crystal constant. This dramatically reduces systematic errors caused by `absorption of X-rays'. Although shaping crystal was thought to be effective for protein crystallography, there was no usual technique to achieve this because protein crystals are exceedingly fragile against mechanical stress. We are developing protein crystal processing system using PULSA technique. In this system, short pulsed UV-laser (maximum power: 1.0 μJ/pulse, wavelength: 193.4 nm, duration: less than 1.3 nsec) is raised by NSL-193L (Nikon Corporation) and focused on 4 μmφ (FWHM). The focused laser is controlled by galvanomic mirror system and irradiates a sample. Combining this mirror system with four-axis goniometer enables to process crystal to arbitrary shape that is easily defined on GUI. Several protein crystals have been successfully processed into spherical, column and square pole shape, etc. In the case of crystal processed into column shape (diameter is 50 μm), in addition to reducing absorption effects, signal-noise ratio of diffraction data can be increased by removing cryoprotectant agent surrounding the crystal. This work was supported by "Platform for Drug Discovery, Informatics, and Structural Life Science" from MEXT, Japan.

Crystallization Behaviors of Linear Polymers in Spin-coating Processes Traced by GISWAXS Measurements

The purpose of this study is clarification of crystallization behaviors of linear polymers in spin-coating film-forming processes on the molecular scale by time-resolved measurements of grazing-incidence small-angle and wide-angle X-ray scattering (GISAXS and GIWAXS: GISWAXS) measurements using synchrotron radiation. A sample used in this study was a commercially-available poly(3-hydroxybutyrate) (P3HB) (Sigma-Aldrich, Mw=437,000, Mw/Mn=1.67, Tg= 276 K) which was a biobased and biocompatible polyester. By spin-coating at rotational speeds of 1000 - 4000 rpm with using 0.49, 1.0, and 2.1wt% chloroform solutions of the P3HB, P3HB thin films with thicknesses of ca. 30 -600 nm were formed on silicon substrates. In these spin-coating processes at 296K, GISAXS and GIWAXS patterns from the sample on the substrate were simultaneously detected at BL45XU of SPring-8 (Hyogo, Japan). At the beginning of spin-coating, an isotropic scattering pattern from the solution was observed. Next, anisotropic Bragg reflections from oriented orthorhombic crystals of P3HB appeared and increased in intensity for several tens seconds. This indicated that P3HB chains crystallized as chloroform evaporated from the sample. It was also found that P3HB orthorhombic crystal having edge-on orientation was preferentially formed in thinner films. When the rotational speed of the substrate increased, the apparent induction period of crystallization slightly increased and the crystal growth rate decreased. This implied that the chain mobility of P3HB for crystallization might reduce due to a reduction in quantity of the solvent molecules and an increase in magnitude of the centrifugal force. These results obtained in this research would be important knowledge to improve film processing technologies for biobased polymeric materials.