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In this study, a particular type of nanoscopic twinned crystal structure which can occur in any tetragonal or orthogonal crystal structure with a ratio of lattice parameters is presented. This type of twinning is characterized by twin components whose c axes are oriented perpendicular to one another, by twin-habit planes parallel to {102} planes, and by a superstructure along the twin boundaries which is described by orthogonal unit cells with lattice parameters 2a, 2a, a. Furthermore, the suitability of electron microdiffraction, a diffraction technique of transmission electron microscopy (TEM) with a moderately convergent beam, for the analysis of such twinned crystal structures is demonstrated. For this demonstration, electron microdiffraction is applied to the chalcogenide compound Cu2In3Se5, which indeed exhibits the proposed twinned crystal structure.