An efficient approach for the regioselective synthesis of (5-amino-3-methylsulfanyl-1H-1,2,4-triazol-1-yl)(2-fluorophenyl)methanone, C10H9FN4OS, (3), from the N-acylation of 3-amino-5-methylsulfanyl-1H-1,2,4-triazole, (1), with 2-fluorobenzoyl chloride has been developed. Heterocyclic amide (3) was used successfully as a strategic intermediate for the preparation of 2-fluoro-N-(3-methylsulfanyl-1H-1,2,4-triazol-5-yl)benzamide, C10H9FN4OS, (4), through a microwave-assisted Fries rearrangement under catalyst- and solvent-free conditions. Theoretical studies of the prototropy process of (1) and the Fries rearrangement of (3) to provide (4), involving the formation of an intimate ion pair as the key step, were carried out by density functional theory (DFT) calculations. The crystallographic analysis of the intermolecular interactions and the energy frameworks based on the effects of the different molecular conformations of (3) and (4) are described.
Supporting information
CCDC references: 1898376; 1898375
For both structures, data collection: CrysAlis PRO (Agilent, 2014); cell refinement: CrysAlis PRO (Agilent, 2014); data reduction: CrysAlis PRO (Agilent, 2014); program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015); molecular graphics: Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL2014 (Sheldrick, 2015).
(5-Amino-3-methylsulfanyl-1
H-1,2,4-triazol-1-yl)(2-fluorophenyl)methanon (Compound_3)
top
Crystal data top
C10H9FN4OS | Z = 2 |
Mr = 252.27 | F(000) = 260 |
Triclinic, P1 | Dx = 1.502 Mg m−3 |
a = 7.6599 (9) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 7.8079 (8) Å | Cell parameters from 5358 reflections |
c = 10.0140 (12) Å | θ = 3.6–27.5° |
α = 94.487 (9)° | µ = 0.29 mm−1 |
β = 108.668 (11)° | T = 298 K |
γ = 97.565 (9)° | Parallelepiped, colorless |
V = 557.83 (12) Å3 | 0.38 × 0.34 × 0.22 mm |
Data collection top
Agilent SuperNova Dual Source diffractometer with an Atlas detector' | 2450 independent reflections |
Radiation source: SuperNova (Mo) X-ray Source | 2107 reflections with I > 2σ(I) |
Detector resolution: 5.3072 pixels mm-1 | Rint = 0.044 |
ω scans | θmax = 27.1°, θmin = 2.9° |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014) | h = −9→9 |
Tmin = 0.856, Tmax = 1.000 | k = −9→10 |
12256 measured reflections | l = −12→12 |
Refinement top
Refinement on F2 | Primary atom site location: iterative |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: mixed |
wR(F2) = 0.116 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.89 | w = 1/[σ2(Fo2) + (0.0563P)2 + 0.4216P] where P = (Fo2 + 2Fc2)/3 |
2450 reflections | (Δ/σ)max = 0.001 |
225 parameters | Δρmax = 0.27 e Å−3 |
159 restraints | Δρmin = −0.22 e Å−3 |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
S1 | 1.02515 (8) | 0.25941 (8) | 1.09852 (5) | 0.05278 (19) | |
H1 | 1.373 (3) | 0.476 (3) | 0.7053 (6) | 0.063* | |
H2 | 1.4957 (16) | 0.518 (3) | 0.8587 (18) | 0.063* | |
C10A | 0.8191 (3) | 0.2346 (10) | 0.5115 (8) | 0.0367 (4) | 0.633 (3) |
C11A | 0.7667 (7) | 0.1073 (11) | 0.3944 (7) | 0.0377 (5) | 0.633 (3) |
C12A | 0.5846 (5) | 0.0481 (9) | 0.3128 (7) | 0.0465 (12) | 0.633 (3) |
H12A | 0.554375 | −0.037357 | 0.235294 | 0.056* | 0.633 (3) |
C13A | 0.4464 (5) | 0.1184 (5) | 0.3483 (4) | 0.0399 (5) | 0.633 (3) |
H13A | 0.321606 | 0.079988 | 0.294066 | 0.048* | 0.633 (3) |
C14A | 0.4925 (5) | 0.2463 (5) | 0.4645 (4) | 0.0391 (4) | 0.633 (3) |
H14A | 0.399095 | 0.295157 | 0.486343 | 0.047* | 0.633 (3) |
C15A | 0.6781 (2) | 0.3005 (7) | 0.5474 (5) | 0.0380 (4) | 0.633 (3) |
H15A | 0.708397 | 0.381670 | 0.627779 | 0.046* | 0.633 (3) |
F1A | 0.9121 (3) | 0.0504 (3) | 0.3615 (2) | 0.0532 (6) | 0.633 (3) |
C10B | 0.8175 (4) | 0.2377 (16) | 0.5144 (14) | 0.0371 (4) | 0.367 (3) |
C11B | 0.7981 (9) | 0.1168 (17) | 0.3994 (10) | 0.0371 (16) | 0.367 (3) |
H11B | 0.903845 | 0.091889 | 0.380400 | 0.045* | 0.367 (3) |
C12B | 0.6220 (13) | 0.0324 (17) | 0.3122 (13) | 0.0390 (5) | 0.367 (3) |
H12B | 0.612361 | −0.055916 | 0.241001 | 0.047* | 0.367 (3) |
C13B | 0.4644 (11) | 0.0767 (9) | 0.3292 (7) | 0.0394 (5) | 0.367 (3) |
H13B | 0.347918 | 0.018856 | 0.269960 | 0.047* | 0.367 (3) |
C14B | 0.4765 (9) | 0.2065 (9) | 0.4335 (7) | 0.0389 (4) | 0.367 (3) |
H14B | 0.368949 | 0.241264 | 0.442838 | 0.047* | 0.367 (3) |
C15B | 0.6519 (3) | 0.2856 (12) | 0.5254 (8) | 0.0380 (4) | 0.367 (3) |
F1B | 0.6863 (5) | 0.4163 (5) | 0.6360 (4) | 0.0557 (11) | 0.367 (3) |
N3 | 0.9653 (2) | 0.2605 (2) | 0.81764 (16) | 0.0400 (4) | |
N4 | 1.0763 (2) | 0.3271 (2) | 0.74015 (16) | 0.0392 (4) | |
C5 | 1.2529 (3) | 0.3998 (3) | 0.8343 (2) | 0.0426 (4) | |
N6 | 1.2581 (2) | 0.3836 (2) | 0.96490 (18) | 0.0466 (4) | |
N7 | 1.3908 (3) | 0.4744 (3) | 0.7944 (2) | 0.0603 (5) | |
C2 | 1.0807 (3) | 0.3004 (3) | 0.9475 (2) | 0.0412 (4) | |
C8 | 1.01785 (18) | 0.3102 (2) | 0.59287 (17) | 0.0372 (4) | |
O9 | 1.12866 (18) | 0.3549 (2) | 0.53342 (15) | 0.0490 (4) | |
C18 | 0.7830 (3) | 0.1643 (3) | 1.0186 (2) | 0.0593 (6) | |
H18A | 0.724733 | 0.160853 | 1.090360 | 0.089* | |
H18B | 0.773136 | 0.047986 | 0.974666 | 0.089* | |
H18C | 0.721750 | 0.233088 | 0.948057 | 0.089* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S1 | 0.0504 (3) | 0.0689 (4) | 0.0336 (3) | 0.0007 (3) | 0.0098 (2) | 0.0081 (2) |
C10A | 0.0323 (6) | 0.0437 (8) | 0.0337 (8) | 0.0040 (6) | 0.0108 (6) | 0.0064 (6) |
C11A | 0.0327 (8) | 0.0447 (10) | 0.0346 (9) | 0.0044 (8) | 0.0107 (7) | 0.0053 (7) |
C12A | 0.033 (2) | 0.062 (3) | 0.0362 (16) | 0.004 (2) | 0.002 (2) | 0.0024 (16) |
C13A | 0.0332 (7) | 0.0470 (10) | 0.0367 (9) | 0.0049 (7) | 0.0090 (7) | 0.0031 (7) |
C14A | 0.0328 (6) | 0.0465 (9) | 0.0360 (9) | 0.0044 (7) | 0.0100 (6) | 0.0037 (7) |
C15A | 0.0325 (6) | 0.0454 (9) | 0.0348 (9) | 0.0039 (6) | 0.0104 (6) | 0.0048 (7) |
F1A | 0.0518 (12) | 0.0632 (13) | 0.0447 (11) | 0.0182 (9) | 0.0155 (9) | −0.0049 (9) |
C10B | 0.0324 (7) | 0.0441 (9) | 0.0340 (8) | 0.0040 (7) | 0.0107 (6) | 0.0060 (7) |
C11B | 0.021 (3) | 0.054 (4) | 0.034 (3) | −0.001 (3) | 0.008 (3) | 0.009 (2) |
C12B | 0.0329 (8) | 0.0462 (10) | 0.0358 (10) | 0.0049 (8) | 0.0098 (8) | 0.0038 (8) |
C13B | 0.0331 (7) | 0.0466 (10) | 0.0362 (9) | 0.0049 (7) | 0.0095 (7) | 0.0030 (8) |
C14B | 0.0327 (6) | 0.0462 (10) | 0.0358 (9) | 0.0044 (7) | 0.0100 (6) | 0.0035 (7) |
C15B | 0.0326 (6) | 0.0453 (9) | 0.0348 (9) | 0.0041 (7) | 0.0104 (6) | 0.0047 (7) |
F1B | 0.056 (2) | 0.062 (2) | 0.054 (2) | 0.0153 (16) | 0.0248 (16) | −0.0005 (16) |
N3 | 0.0366 (8) | 0.0471 (9) | 0.0338 (8) | −0.0019 (6) | 0.0119 (6) | 0.0042 (6) |
N4 | 0.0319 (8) | 0.0479 (9) | 0.0339 (8) | −0.0032 (6) | 0.0103 (6) | 0.0012 (6) |
C5 | 0.0322 (9) | 0.0475 (11) | 0.0418 (10) | −0.0003 (8) | 0.0077 (8) | 0.0003 (8) |
N6 | 0.0355 (8) | 0.0572 (10) | 0.0396 (9) | −0.0008 (7) | 0.0065 (7) | 0.0021 (7) |
N7 | 0.0349 (9) | 0.0893 (15) | 0.0445 (10) | −0.0158 (9) | 0.0088 (8) | 0.0000 (10) |
C2 | 0.0362 (9) | 0.0458 (10) | 0.0377 (10) | 0.0021 (8) | 0.0090 (8) | 0.0047 (8) |
C8 | 0.0342 (9) | 0.0409 (9) | 0.0375 (9) | 0.0054 (7) | 0.0137 (7) | 0.0050 (7) |
O9 | 0.0373 (7) | 0.0676 (10) | 0.0435 (8) | 0.0012 (6) | 0.0184 (6) | 0.0064 (7) |
C18 | 0.0531 (13) | 0.0743 (16) | 0.0490 (12) | −0.0062 (11) | 0.0220 (10) | 0.0059 (11) |
Geometric parameters (Å, º) top
S1—C2 | 1.739 (2) | C12B—H12B | 0.9300 |
S1—C18 | 1.796 (2) | C13B—C14B | 1.369 (7) |
C10A—C15A | 1.388 (5) | C13B—H13B | 0.9300 |
C10A—C11A | 1.391 (5) | C14B—C15B | 1.391 (6) |
C10A—C8 | 1.491 (2) | C14B—H14B | 0.9300 |
C11A—C12A | 1.367 (6) | C15B—F1B | 1.380 (8) |
C11A—F1A | 1.374 (6) | N3—C2 | 1.303 (2) |
C12A—C13A | 1.382 (5) | N3—N4 | 1.402 (2) |
C12A—H12A | 0.9300 | N4—C8 | 1.387 (2) |
C13A—C14A | 1.392 (4) | N4—C5 | 1.393 (2) |
C13A—H13A | 0.9300 | C5—N6 | 1.312 (3) |
C14A—C15A | 1.386 (4) | C5—N7 | 1.326 (3) |
C14A—H14A | 0.9300 | N6—C2 | 1.377 (2) |
C15A—H15A | 0.9300 | N7—H1 | 0.8600 (11) |
C10B—C11B | 1.386 (9) | N7—H2 | 0.8600 (11) |
C10B—C15B | 1.403 (7) | C8—O9 | 1.214 (2) |
C10B—C8 | 1.491 (2) | C18—H18A | 0.9600 |
C11B—C12B | 1.392 (10) | C18—H18B | 0.9600 |
C11B—H11B | 0.9300 | C18—H18C | 0.9600 |
C12B—C13B | 1.356 (9) | | |
| | | |
C2—S1—C18 | 100.21 (10) | C13B—C14B—C15B | 119.0 (6) |
C15A—C10A—C11A | 117.7 (3) | C13B—C14B—H14B | 120.5 |
C15A—C10A—C8 | 119.2 (3) | C15B—C14B—H14B | 120.5 |
C11A—C10A—C8 | 123.0 (4) | F1B—C15B—C14B | 125.7 (4) |
C12A—C11A—F1A | 121.8 (4) | F1B—C15B—C10B | 112.1 (4) |
C12A—C11A—C10A | 123.0 (5) | C14B—C15B—C10B | 122.2 (6) |
F1A—C11A—C10A | 115.2 (3) | C2—N3—N4 | 101.36 (14) |
C11A—C12A—C13A | 118.4 (5) | C8—N4—C5 | 127.12 (15) |
C11A—C12A—H12A | 120.8 | C8—N4—N3 | 123.84 (14) |
C13A—C12A—H12A | 120.8 | C5—N4—N3 | 108.91 (15) |
C12A—C13A—C14A | 120.5 (4) | N6—C5—N7 | 126.71 (18) |
C12A—C13A—H13A | 119.7 | N6—C5—N4 | 109.42 (16) |
C14A—C13A—H13A | 119.7 | N7—C5—N4 | 123.86 (18) |
C15A—C14A—C13A | 119.8 (3) | C5—N6—C2 | 103.34 (16) |
C15A—C14A—H14A | 120.1 | C5—N7—H1 | 119.0 (17) |
C13A—C14A—H14A | 120.1 | C5—N7—H2 | 118.8 (17) |
C14A—C15A—C10A | 120.5 (3) | H1—N7—H2 | 122 (2) |
C14A—C15A—H15A | 119.7 | N3—C2—N6 | 116.95 (17) |
C10A—C15A—H15A | 119.7 | N3—C2—S1 | 124.73 (15) |
C11B—C10B—C15B | 116.3 (5) | N6—C2—S1 | 118.31 (14) |
C11B—C10B—C8 | 111.4 (5) | O9—C8—N4 | 119.78 (14) |
C15B—C10B—C8 | 131.7 (6) | O9—C8—C10B | 122.9 (6) |
C10B—C11B—C12B | 120.7 (7) | N4—C8—C10B | 117.4 (6) |
C10B—C11B—H11B | 119.6 | O9—C8—C10A | 121.7 (4) |
C12B—C11B—H11B | 119.6 | N4—C8—C10A | 118.5 (4) |
C13B—C12B—C11B | 121.1 (10) | S1—C18—H18A | 109.5 |
C13B—C12B—H12B | 119.4 | S1—C18—H18B | 109.5 |
C11B—C12B—H12B | 119.4 | H18A—C18—H18B | 109.5 |
C12B—C13B—C14B | 120.1 (7) | S1—C18—H18C | 109.5 |
C12B—C13B—H13B | 120.0 | H18A—C18—H18C | 109.5 |
C14B—C13B—H13B | 120.0 | H18B—C18—H18C | 109.5 |
| | | |
C15A—C10A—C11A—C12A | 1.4 (15) | N3—N4—C5—N6 | −0.4 (2) |
C8—C10A—C11A—C12A | −174.5 (8) | C8—N4—C5—N7 | 4.2 (3) |
C15A—C10A—C11A—F1A | 178.3 (8) | N3—N4—C5—N7 | −179.8 (2) |
C8—C10A—C11A—F1A | 2.4 (14) | N7—C5—N6—C2 | 179.1 (2) |
F1A—C11A—C12A—C13A | −176.6 (7) | N4—C5—N6—C2 | −0.3 (2) |
C10A—C11A—C12A—C13A | 0.1 (14) | N4—N3—C2—N6 | −1.2 (2) |
C11A—C12A—C13A—C14A | 0.0 (9) | N4—N3—C2—S1 | 177.63 (14) |
C12A—C13A—C14A—C15A | −1.6 (7) | C5—N6—C2—N3 | 1.0 (2) |
C13A—C14A—C15A—C10A | 3.2 (8) | C5—N6—C2—S1 | −177.93 (15) |
C11A—C10A—C15A—C14A | −3.1 (12) | C18—S1—C2—N3 | −1.9 (2) |
C8—C10A—C15A—C14A | 173.0 (6) | C18—S1—C2—N6 | 176.86 (17) |
C15B—C10B—C11B—C12B | −8 (2) | C5—N4—C8—O9 | 3.3 (3) |
C8—C10B—C11B—C12B | 179.6 (13) | N3—N4—C8—O9 | −172.11 (17) |
C10B—C11B—C12B—C13B | 6 (2) | C5—N4—C8—C10B | −176.2 (6) |
C11B—C12B—C13B—C14B | 0.0 (17) | N3—N4—C8—C10B | 8.4 (6) |
C12B—C13B—C14B—C15B | −3.1 (12) | C5—N4—C8—C10A | −177.5 (4) |
C13B—C14B—C15B—F1B | −179.4 (8) | N3—N4—C8—C10A | 7.1 (4) |
C13B—C14B—C15B—C10B | 0.4 (15) | C11B—C10B—C8—O9 | 44.0 (16) |
C11B—C10B—C15B—F1B | −175.0 (13) | C15B—C10B—C8—O9 | −126.6 (15) |
C8—C10B—C15B—F1B | −5 (2) | C11B—C10B—C8—N4 | −136.5 (11) |
C11B—C10B—C15B—C14B | 5 (2) | C15B—C10B—C8—N4 | 52.9 (19) |
C8—C10B—C15B—C14B | 175.4 (12) | C15A—C10A—C8—O9 | −130.7 (7) |
C2—N3—N4—C8 | 177.04 (17) | C11A—C10A—C8—O9 | 45.2 (11) |
C2—N3—N4—C5 | 0.9 (2) | C15A—C10A—C8—N4 | 50.1 (9) |
C8—N4—C5—N6 | −176.37 (18) | C11A—C10A—C8—N4 | −134.0 (8) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N7—H1···O9 | 0.86 (1) | 2.14 (2) | 2.738 (2) | 126 (2) |
C15A—H15A···N3 | 0.93 | 2.60 | 2.960 (5) | 104 |
N7—H2···N6i | 0.86 (2) | 2.13 (2) | 2.987 (3) | 174 (2) |
C14A—H14A···O9ii | 0.93 | 2.36 | 3.275 (4) | 167 |
Symmetry codes: (i) −x+3, −y+1, −z+2; (ii) x−1, y, z. |
2-Fluoro-
N-(3-methylsulfanyl-1
H-1,2,4-triazol-5-yl)benzamide (Compound_4)
top
Crystal data top
C10H9FN4OS | F(000) = 520 |
Mr = 252.27 | Dx = 1.556 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
a = 5.0509 (11) Å | Cell parameters from 3138 reflections |
b = 26.640 (5) Å | θ = 4.0–24.7° |
c = 8.0251 (16) Å | µ = 0.30 mm−1 |
β = 94.12 (2)° | T = 298 K |
V = 1077.0 (4) Å3 | Parallelepiped, colorless |
Z = 4 | 0.23 × 0.08 × 0.05 mm |
Data collection top
Agilent SuperNova Dual Source diffractometer with an Atlas detector | 5060 independent reflections |
Radiation source: SuperNova (Mo) X-ray Source | 3267 reflections with I > 2σ(I) |
Detector resolution: 5.3072 pixels mm-1 | Rint = 0.080 |
ω scans | θmax = 26.8°, θmin = 3.1° |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014) | h = −6→6 |
Tmin = 0.734, Tmax = 1.000 | k = −33→33 |
5060 measured reflections | l = −9→9 |
Refinement top
Refinement on F2 | Primary atom site location: iterative |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.071 | Hydrogen site location: mixed |
wR(F2) = 0.237 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.10 | w = 1/[σ2(Fo2) + (0.1329P)2] where P = (Fo2 + 2Fc2)/3 |
5060 reflections | (Δ/σ)max = 0.001 |
165 parameters | Δρmax = 0.29 e Å−3 |
0 restraints | Δρmin = −0.37 e Å−3 |
Special details top
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell esds are taken
into account individually in the estimation of esds in distances, angles
and torsion angles; correlations between esds in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refined as a 3-component twin |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S1 | 0.1477 (4) | 0.27586 (4) | 0.0007 (2) | 0.0449 (5) | |
F1 | 0.1660 (7) | 0.53895 (10) | 0.1032 (4) | 0.0505 (9) | |
H1 | 0.223 (15) | 0.461 (2) | 0.206 (8) | 0.06 (2)* | |
O1 | 0.8265 (8) | 0.46221 (12) | 0.2805 (5) | 0.0404 (10) | |
N1 | 0.5883 (9) | 0.32664 (13) | 0.1083 (6) | 0.0357 (11) | |
C1 | 0.4195 (13) | 0.23505 (19) | −0.0417 (9) | 0.0544 (18) | |
H1A | 0.351155 | 0.204771 | −0.093496 | 0.082* | |
H1B | 0.519322 | 0.226953 | 0.061054 | 0.082* | |
H1C | 0.532742 | 0.251692 | −0.115383 | 0.082* | |
C2 | 0.3270 (11) | 0.32716 (16) | 0.0838 (6) | 0.0303 (11) | |
N2 | 0.6408 (10) | 0.37462 (14) | 0.1623 (6) | 0.0344 (11) | |
C3 | 0.4156 (10) | 0.40049 (16) | 0.1636 (6) | 0.0301 (12) | |
N3 | 0.2102 (9) | 0.37196 (14) | 0.1168 (6) | 0.0358 (11) | |
C4 | 0.6041 (11) | 0.48003 (17) | 0.2559 (6) | 0.0307 (12) | |
H4 | 0.81 (2) | 0.386 (3) | 0.187 (12) | 0.11 (3)* | |
N4 | 0.3965 (9) | 0.45071 (14) | 0.1992 (6) | 0.0342 (10) | |
C6 | 0.3445 (12) | 0.56183 (17) | 0.2127 (7) | 0.0361 (13) | |
C5 | 0.5514 (10) | 0.53388 (16) | 0.2864 (6) | 0.0305 (12) | |
C7 | 0.3142 (13) | 0.61226 (18) | 0.2366 (7) | 0.0448 (15) | |
H7 | 0.173297 | 0.629657 | 0.182589 | 0.054* | |
C9 | 0.7035 (14) | 0.60997 (19) | 0.4223 (8) | 0.0497 (16) | |
H9 | 0.824367 | 0.626244 | 0.496651 | 0.060* | |
C8 | 0.4989 (14) | 0.63664 (19) | 0.3431 (8) | 0.0520 (17) | |
H8 | 0.484520 | 0.670992 | 0.361139 | 0.062* | |
C10 | 0.7318 (12) | 0.55995 (18) | 0.3933 (7) | 0.0388 (13) | |
H10 | 0.874783 | 0.542851 | 0.446041 | 0.047* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S1 | 0.0279 (8) | 0.0374 (7) | 0.0688 (11) | −0.0045 (6) | −0.0013 (7) | −0.0100 (6) |
F1 | 0.044 (2) | 0.0498 (17) | 0.055 (2) | 0.0030 (15) | −0.0163 (17) | 0.0033 (15) |
O1 | 0.025 (2) | 0.0422 (19) | 0.053 (2) | 0.0033 (16) | −0.0032 (18) | −0.0046 (16) |
N1 | 0.027 (3) | 0.033 (2) | 0.047 (3) | −0.0011 (18) | 0.004 (2) | −0.0006 (18) |
C1 | 0.040 (4) | 0.043 (3) | 0.082 (5) | 0.001 (3) | 0.009 (4) | −0.019 (3) |
C2 | 0.019 (3) | 0.035 (2) | 0.037 (3) | 0.000 (2) | 0.001 (2) | 0.001 (2) |
N2 | 0.020 (3) | 0.034 (2) | 0.049 (3) | 0.0007 (19) | 0.002 (2) | −0.0024 (18) |
C3 | 0.024 (3) | 0.033 (2) | 0.034 (3) | 0.004 (2) | −0.001 (2) | 0.000 (2) |
N3 | 0.024 (3) | 0.033 (2) | 0.051 (3) | −0.0016 (18) | 0.005 (2) | −0.0025 (19) |
C4 | 0.026 (3) | 0.035 (2) | 0.031 (3) | −0.003 (2) | 0.005 (2) | −0.002 (2) |
N4 | 0.018 (3) | 0.036 (2) | 0.050 (3) | 0.0030 (19) | 0.005 (2) | −0.0010 (18) |
C6 | 0.037 (4) | 0.037 (3) | 0.036 (3) | −0.003 (2) | 0.010 (3) | 0.003 (2) |
C5 | 0.028 (3) | 0.035 (2) | 0.028 (3) | −0.002 (2) | 0.006 (2) | 0.002 (2) |
C7 | 0.044 (4) | 0.044 (3) | 0.048 (4) | 0.007 (3) | 0.015 (3) | 0.010 (2) |
C9 | 0.056 (5) | 0.045 (3) | 0.049 (4) | −0.012 (3) | 0.007 (3) | −0.006 (3) |
C8 | 0.065 (5) | 0.036 (3) | 0.058 (4) | −0.002 (3) | 0.021 (3) | −0.002 (3) |
C10 | 0.033 (4) | 0.045 (3) | 0.038 (3) | −0.004 (2) | 0.004 (3) | −0.007 (2) |
Geometric parameters (Å, º) top
S1—C2 | 1.746 (5) | C4—N4 | 1.360 (7) |
S1—C1 | 1.803 (6) | C4—C5 | 1.483 (7) |
F1—C6 | 1.357 (6) | N4—H1 | 0.93 (7) |
O1—C4 | 1.222 (6) | C6—C7 | 1.367 (7) |
N1—C2 | 1.320 (7) | C6—C5 | 1.381 (7) |
N1—N2 | 1.370 (6) | C5—C10 | 1.391 (7) |
C1—H1A | 0.9600 | C7—C8 | 1.381 (9) |
C1—H1B | 0.9600 | C7—H7 | 0.9300 |
C1—H1C | 0.9600 | C9—C10 | 1.362 (7) |
C2—N3 | 1.366 (6) | C9—C8 | 1.372 (9) |
N2—C3 | 1.331 (7) | C9—H9 | 0.9300 |
N2—H4 | 0.90 (10) | C8—H8 | 0.9300 |
C3—N3 | 1.319 (7) | C10—H10 | 0.9300 |
C3—N4 | 1.373 (6) | | |
| | | |
C2—S1—C1 | 99.4 (3) | C4—N4—C3 | 124.4 (5) |
C2—N1—N2 | 101.9 (4) | C4—N4—H1 | 121 (4) |
S1—C1—H1A | 109.5 | C3—N4—H1 | 113 (4) |
S1—C1—H1B | 109.5 | F1—C6—C7 | 117.2 (5) |
H1A—C1—H1B | 109.5 | F1—C6—C5 | 118.8 (4) |
S1—C1—H1C | 109.5 | C7—C6—C5 | 124.0 (5) |
H1A—C1—H1C | 109.5 | C6—C5—C10 | 115.9 (4) |
H1B—C1—H1C | 109.5 | C6—C5—C4 | 126.2 (5) |
N1—C2—N3 | 114.9 (4) | C10—C5—C4 | 117.9 (5) |
N1—C2—S1 | 122.3 (3) | C6—C7—C8 | 118.1 (6) |
N3—C2—S1 | 122.6 (4) | C6—C7—H7 | 120.9 |
C3—N2—N1 | 109.8 (4) | C8—C7—H7 | 120.9 |
C3—N2—H4 | 128 (5) | C10—C9—C8 | 120.8 (6) |
N1—N2—H4 | 122 (5) | C10—C9—H9 | 119.6 |
N3—C3—N2 | 110.8 (4) | C8—C9—H9 | 119.6 |
N3—C3—N4 | 123.7 (5) | C9—C8—C7 | 119.7 (5) |
N2—C3—N4 | 125.4 (5) | C9—C8—H8 | 120.1 |
C3—N3—C2 | 102.5 (4) | C7—C8—H8 | 120.1 |
O1—C4—N4 | 120.6 (4) | C9—C10—C5 | 121.4 (5) |
O1—C4—C5 | 121.5 (5) | C9—C10—H10 | 119.3 |
N4—C4—C5 | 117.9 (5) | C5—C10—H10 | 119.3 |
| | | |
N2—N1—C2—N3 | 0.6 (6) | F1—C6—C5—C10 | 178.1 (5) |
N2—N1—C2—S1 | 176.0 (4) | C7—C6—C5—C10 | 1.4 (8) |
C1—S1—C2—N1 | −3.9 (5) | F1—C6—C5—C4 | 1.2 (8) |
C1—S1—C2—N3 | 171.2 (4) | C7—C6—C5—C4 | −175.5 (5) |
C2—N1—N2—C3 | −1.3 (5) | O1—C4—C5—C6 | 155.9 (5) |
N1—N2—C3—N3 | 1.6 (6) | N4—C4—C5—C6 | −24.1 (7) |
N1—N2—C3—N4 | −175.0 (4) | O1—C4—C5—C10 | −21.0 (7) |
N2—C3—N3—C2 | −1.2 (5) | N4—C4—C5—C10 | 159.0 (5) |
N4—C3—N3—C2 | 175.5 (5) | F1—C6—C7—C8 | −177.9 (5) |
N1—C2—N3—C3 | 0.3 (6) | C5—C6—C7—C8 | −1.2 (8) |
S1—C2—N3—C3 | −175.0 (4) | C10—C9—C8—C7 | 2.0 (9) |
O1—C4—N4—C3 | −0.8 (8) | C6—C7—C8—C9 | −0.6 (9) |
C5—C4—N4—C3 | 179.2 (4) | C8—C9—C10—C5 | −1.7 (9) |
N3—C3—N4—C4 | 176.4 (5) | C6—C5—C10—C9 | 0.0 (8) |
N2—C3—N4—C4 | −7.4 (8) | C4—C5—C10—C9 | 177.2 (5) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H1···F1 | 0.92 (7) | 2.25 (6) | 2.710 (5) | 111 (5) |
N2—H4···O1 | 0.92 (10) | 2.16 (8) | 2.664 (5) | 114 (7) |
N4—H1···O1i | 0.92 (7) | 2.13 (8) | 3.013 (6) | 159 (5) |
N2—H4···N3ii | 0.92 (10) | 2.17 (10) | 2.926 (7) | 140 (8) |
C10—H10···O1iii | 0.93 | 2.58 | 3.367 (7) | 143 |
C1—H1A···N1iv | 0.96 | 2.78 | 3.566 (8) | 140 |
Symmetry codes: (i) x−1, y, z; (ii) x+1, y, z; (iii) −x+2, −y+1, −z+1; (iv) x−1/2, −y+1/2, z−1/2. |
Calculated energy (Hartrees), energy difference (ΔE) relative to T2,
zero-point energy (ZPE), and total dipole moment (D) for tautomers
T1, T2, T3 and T4 and transition states TS12, TS23 and TS34 in the gas
phase topNote: E = Eelectr + ZPE + Evib + Erot +
Etrans |
Compound | Calculated energy | ΔE (kcal mol-1) | ZPE | Dipole moment (D) |
T1 | -735.2403243 | 1.03 | 0.104679 | 3.22 |
T2 | -735.2419592 | 0.00 | 0.104671 | 3.94 |
T3 | -735.1820171 | 38.18 | 0.105567 | 8.39 |
T4 | -735.2301485 | 7.17 | 0.104283 | 3.72 |
TS12 | -735.1592070 | 48.69 | 0.099515 | 1.19 |
TS23 | -735.1461367 | 57.20 | 0.100009 | 5.38 |
TS34 | -735.1424800 | 59.30 | 0.099699 | 5.20 |
Optimization of the reaction conditions for the synthesis of secondary amide
(4)a topEntry | Solvent | T (K) | Time t | Yieldb (%) |
1 | THF | Refluxc | 6 h | 15 |
2 | PhMe | Refluxc | 6 h | 31 |
3d | – | 413 | 10 min | 19 |
4d | – | 433 | 10 min | 42 |
5d | – | 453 | 10 min | 69 |
6d | – | 453 | 20 min | 84 |
Notes: (a) reaction conditions: tertiary amide (3) (0.25 mmol);
(b) isolated yield;
(c) conventional heating;
(d) run in 10.0 ml sealed tubes at a power of 300 W
in the absence of solvent. |
CE-HF interaction energies (kJ mol-1) for (3). topN is the number of molecules with an R molecular
centroid-to-centroid distance (Å). Electron density was calculated using
HF/3-21G model energies. |
N | R | Eele | Epol | Edis | Erep | Etot* |
1 | 8.38 | -144.9 | -3.8 | -19.7 | 8.9 | -160.6 |
1 | 5.48 | -234.2 | -13.6 | -72.5 | 18.6 | -297.7 |
1 | 5.89 | -181.1 | -89.3 | -142.9 | 85.5 | -302.1 |
1 | 11.13 | -100.3 | -0.3 | -2.5 | 0.0 | -104.6 |
2 | 10.01 | -105.2 | -8.6 | -20.3 | 4.7 | -127.3 |
2 | 10.48 | -124.0 | -6.3 | -12.6 | 16.7 | -128.3 |
1 | 7.66 | -153.2 | -8.1 | -42.0 | 20.0 | -183.0 |
2 | 7.66 | -149.0 | -8.6 | -27.8 | 49.6 | -142.3 |
1 | 5.55 | -242.6 | -25.3 | -67.1 | 19.7 | -308.2 |
1 | 7.16 | -192.1 | -9.1 | -34.6 | -1.2 | -233.7 |
1 | 10.32 | -189.7 | -27.0 | -16.7 | 58.5 | -178.5 |
Note: (*) scale factors used to determine Etot:
Eele = 1.019, Epol = 0.651, Edis = 0.901 and
Erep = 0.811. |
CE-HF interaction energies (kJ mol-1) for (4). topN is the number of molecules with an R molecular
centroid-to-centroid distance (Å). Electron density was calculated using
HF/3-21G model energies. |
N | R | Eele | Epol | Edis | Erep | Etot* |
1 | 5.97 | -22.5 | -5.0 | -21.2 | 6.7 | -39.9 |
2 | 5.05 | -45.2 | -15.1 | -39.2 | 47.1 | -53.1 |
2 | 11.19 | -1.4 | -1.3 | -9.9 | 4.5 | -7.5 |
2 | 11.32 | -1.4 | -1.0 | -6.4 | 3.8 | -4.8 |
2 | 13.52 | -6.2 | -1.4 | -7.6 | 5.4 | -9.7 |
1 | 4.29 | -8.1 | -3.0 | -62.6 | 24.3 | -46.8 |
2 | 13.72 | -1.0 | -0.7 | -5.8 | 2.2 | -4.8 |
1 | 6.03 | -10.2 | -3.2 | -42.4 | 16.0 | -37.8 |
1 | 8.03 | -12.8 | -3.3 | -15.9 | 8.7 | -22.5 |
Note: (*) scale factors used to determine Etot:
Eele = 1.019, Epol = 0.651, Edis = 0.901 and
Erep = 0.811. |