Download citation
Download citation
link to html
The crystal structure of N-[(1-{2-oxo-2-[2-(pyrazin-2-ylcarbon­yl)hydrazin-1-yl]eth­yl}cyclo­hex­yl)meth­yl]pyrazine-2-carbox­amide monohydrate (Pyr-Gpn-NN-NH-Pyr·H2O), C19H23N7O3·H2O, reveals an unusual trans-gauche (tg-) conformation for the gabapentin (Gpn) residue around the C[gamma]-C[beta] ([theta]1) and C[beta]-C[alpha] ([theta]2) bonds. The mol­ecular conformation is stabilized by intra­molecular N-H...N hydrogen bonds and weak C-H...O inter­actions. The packing of the mol­ecules in the crystal lattice shows a network of strong N-H...O and O-H...O hydrogen bonds together with weak C-H...O and [pi]-[pi] inteactions.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S2053229614015587/yf3062sup1.cif
Contains datablocks I, New_Global_Publ_Block

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2053229614015587/yf3062Isup2.hkl
Contains datablock I

CCDC reference: 1012037

Introduction top

Gabapentin {2-[1-(amino­methyl)­cyclo­hexyl]­acetic acid, Gpn} is a β,β-disubstituted γ-amino acid, which has has been used as an anti­epileptic drug, as well as employed for the treatment of neuropathic pain (Wheeler, 2002; Stefan & Feuerstein, 2007; Rosenberg et al., 1997; Maneuf et al., 2003). Gabapentin has been extensively studied for the occurrence of polymorphic crystal forms (Ibers, 2001; Reece & Levendis, 2008). It has been widely used in the construction of hybrid peptides, as well as in oligomers (Vasudev et al., 2009; Balaram, 2010). In order to study the influence of pyrolidine rings on the conformation of gabapentin, we synthesized N-[(1-{2-oxo-2-[2-(pyrazin-2-yl­carbonyl)­hydrazin-1-yl]ethyl}­cyclo­hexyl)­methyl]­pyrazine-2-carboxamide monohydrate (Pyr-Gpn-NN—NH-Pyr.H2O; Pyr is pyrazol-2-yl­carbonyl), (I), in which Pyr groups are positioned at the N- and C-termini of the Gpn residue. In our previous study, a gauche conformation was reported for the Gpn residue in Pyr-Gpn-OH, in which only the N-terminus is protected by a Pyr group (Wani et al., 2013).

Experimental top

Synthesis and crystallization top

Preparation of Pyr-Gpn-OMe top

Pyrazine carb­oxy­lic acid (3.0 mmol, 372.0 mg) was dissolved in dry dichlo­methane (CH2Cl2) and then added to N-methyl­morpholine (200 µl) followed by Gpn–OMe·HCl (3.0 mmol, 666.5 mg) and EDCI·HCl (3.0 mmol, 576.0 mg) under ice-cold conditions. The reaction mixture was stirred at room temperature for 12 h. After completion of the reaction, water was added to the reaction mixture and extracted with CH2Cl2 (3 × 5.0 ml). The combined organic layer was washed with 2 N HCl (2 × 5.0 ml), Na2CO3 (2 × 5.0 ml) and brine solution (5.0 ml). The organic layer was passed over anhydrous Na2SO4 and evaporated under vacuum to give Pyr-Gpn-OMe (yield 610.0 mg, 69.8%).

Preparation of Pyr-Gpn-NH—NH~2~ top

Pyr-Gpn-OMe (1.0 mmol, 291.0 mg) was dissolved in dry methanol (1.0 ml) and added to hydrazine hydrate (100 µl). The reaction mixture was stirred for 5 h at room temperature. After completion of the reaction, the solvent was evaporated under vacuum to dryness and water (5.0 ml) was added. The product was extracted with ethyl acetate (3 × 5.0 ml), washed with brine solution (5.0 ml), passed over anhydrous Na2SO4 and evaporated under vacuum to give Pyr-Gpn-NH—NH2 (yield 200 mg, 68.72%).

Preparation of Pyr-Gpn-NH—NH-Pyr.H~2Õ, (I) top

Pyr-COOH (0.5 mmol, 62.0 mg) was dissolved in dry di­chloro­methane followed by the addition of N-methyl­morpholine (50 µl), EDCI (0.5 mmol, 96.0 mg) and Pyr-Gpn-NH—NH2 (0.5 mmol, 145.0 mg). The reaction mixture was stirred for 16 h. The solvent was evaporated completely and water was added. The product was extracted with ethyl acetate (3 × 5.0 ml), followed by washing with 2 N HCl (1 × 5.0 ml), Na2CO3 (5.0 ml) and brine solution (5.0 ml). The organic layer was passed over anhydrous Na2SO4 and evaporated under vacuum to dryness to yield the product, which was purified by column chromatography (yield 68.91%, 100 mg). Pyr-Gpn-NN—NH-Pyr was crystallized by slow evaporation from an methanol–water (9:1 v/v) mixture as the monohydrate.

Refinement top

Crystal data, data collection and structure refinement details are summarized in Table 1. H atoms were located in a difference Fourier map and both their coordinates and Uiso(H) values were refined.

Results and discussion top

The conformation of the molecule of (I) (Fig. 1a) is stabilized by intra­molecular (C5) N—H···N hydrogen bonds (N1—H1N···N11 and N3—H3N···N22) and a weak C—H···O inter­action between the Gpn CγH and Pyr groups (C3—H3···O1iv; see Table 3 for details and symmetry code). A similar kind of C5 N—H···H and C—H···O inter­action was observed in the crystal structure of Pyr-Gpn-OH (Wani et al., 2013). Weak C—H···O inter­actions play a crucial role in the control of the molecular conformation (Venugopalan & Kishore, 2013) and the packing of molecules in the crystal lattice (Desiraju, 1996; Steiner, 1997; Lo Prestil et al., 2006). The Gpn residue adopts a trans–gauche (tg-) conformation around the Cγ—Cβ (θ1) and Cβ—Cα (θ2) bonds. The backbone dihedral angles are listed in Table 2. Generally, the values of torsion angles θ1 and θ2 of Gpn residue in protected derivatives, as well as in peptide sequences (Vasudev et al., 2009; Balaram, 2010; Vasudev et al., 2011), are restricted to the gauche–gauche (gg) conformation due to the substitution of the cyclo­hexyl ring at the β-position. In the case of the o­cta­peptide, viz. Boc-Leu-Phe-Val-Aib-Gpn-Leu-Phe-Val-OMe (Chatterjee et al., 2009), the Gpn residue favours a gauche–trans (gt) conformation. To the best of our knowledge, this is the only example of a gt conformation for a Gpn residue in a peptide reported in the literature. Fig. 1(b) shows the L-shaped structure of the molecule. The cyclo­hexyl ring adopts a classical chair conformation, with an equatorial orientation of the amino­methyl group [the corresponding puckering parameters are Q = 0.555 (3) Å, θ = 1.0 (3)° and ϕ = 35 (17)° (Cremer & Pople, 1975)].

Fig. 2 shows the hydrogen-bond inter­actions formed by the molecule. The dimer around the centre of inversion is stabilized by a pair of N—H···O hydrogen bonds, i.e. N1—H1N···O1(-x, -y-1, -z). The hydrogen-bond parameters are listed in Table 3. The water molecule forms a hydrogen bond with amide atom N2 and also bridges the symmetry-related molecules O1A at (-x-1/2, y-1/2, -z-1/2) and O1B at (-x-1/2, y+1/2, -z-1/2) through O—H···O(carbonyl) hydrogen bonds. In addtion to these hydrgen bonds, a strong N—H···N hydrogen bond between atom N3 and pyrazine atom N12 [N3—H3N···N12(-x, -y, -z)] is present, together with weak C—H···O hydrogen bonds between atoms C3 and C9 of the pyrazine ring and carbonyl atom O1 and water atom O1w, respectively [C9—H9···O1w(-x-1, -y-1, -z) and C3—H3···O1(x, y+1, z)]. Fig. 3 illustrates the spatial arrangement of the pyrazine rings in the crystal lattice. The pyrazine rings of symmetry-related molecules come close in space and the distance between the centroids are listed in Table 3. It can been seen that only the distance between centroids c1 and c10 and between c7 and c8 fall below the 4Å cut-off for stacking ππ inter­actions (Burley & Petsko, 1985, 1988; Ma et al., 2010). Fig. 4 shows the packing of the molecules of (I) in the crystal along the b axis, held together by strong N—N···N, O—H···O and N—H···O hydrogen bonds, and by weaker C—H···O inter­actions and a network of ππ inter­actions.

The present study provides the first example of gabapentin (Gpn) with a trans–gauche (tg) conformation, which may be useful in the constuction of folded structures in designed peptide sequences.

Related literature top

For related literature, see: Balaram (2010); Burley & Petsko (1985, 1988); Chatterjee et al. (2009); Cremer & Pople (1975); Desiraju (1996); Ibers (2001); Lo Prestil, Soave & Destro (2006); Ma et al. (2010); Maneuf et al. (2003); Reece & Levendis (2008); Rosenberg et al. (1997); Stefan & Feuerstein (2007); Steiner (1997); Vasudev et al. (2009, 2011); Venugopalan & Kishore (2013); Wani et al. (2013); Wheeler (2002).

Computing details top

Data collection: CrysAlis PRO (Oxford Diffraction, 2010); cell refinement: CrysAlis PRO (Oxford Diffraction, 2010); data reduction: CrysAlis PRO (Oxford Diffraction, 2010); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: PLATON (Spek, 2009).

Figures top
[Figure 1] Fig. 1. (a) The molecular structure of (I), showing the atom-labeling scheme. Displacement ellipsoids are drawn at the 40% probability level. H atoms are shown as small spheres of arbitrary radii. (b) Ball-and-stick model showing the bend conformation (L-shaped) of the molecule in the crystal.
[Figure 2] Fig. 2. (a) Hydrogen-bond interactions around the asymmetric unit. Only H atoms involved in hydrogen-bond interactions are shown. [Symmetry codes: (i) -x, -y-1, -z; (ii) -x-1/2, y-1/2, -z-1/2; (iii) -x-1/2, y+1/2, -z-1/2; (iv) -x, -y, -z; (v) -x-1, -y-1, -z; (vi) x, y+1, z.]
[Figure 3] Fig. 3. (a) The crystal packing in (I), showing the spatial arrangement of pyrazine rings in the crystal lattice. The centroids are marked as cx (x = 1–10). (b) A side view of the interactions (rotation by 90°) showing only the ππ interaction between molecules at (x, y, z) and (-x+1, -y+1, -z) in the packing.
[Figure 4] Fig. 4. Packing arrangement of molecules viewed down the b axis.
N-[(1-{2-Oxo-2-[2-(pyrazin-2-ylcarbonyl)hydrazin-1-yl]ethyl}cyclohexyl)methyl]pyrazine-2-carboxamide monohydrate top
Crystal data top
C19H23N7O3·H2OF(000) = 880
Mr = 415.46Dx = 1.385 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2317 reflections
a = 13.6666 (6) Åθ = 3.7–27.0°
b = 9.6505 (5) ŵ = 0.10 mm1
c = 15.1672 (7) ÅT = 293 K
β = 95.079 (5)°Rod, color less
V = 1992.54 (16) Å30.36 × 0.21 × 0.18 mm
Z = 4
Data collection top
Oxford Diffraction Xcalibur Sapphire3
diffractometer
4294 independent reflections
Radiation source: fine-focus sealed tube2355 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.037
Detector resolution: 16.1049 pixels mm-1θmax = 27.0°, θmin = 3.6°
ω scanh = 1617
Absorption correction: multi-scan
(CrysAlis PRO; Oxford Diffraction, 2010)
k = 1012
Tmin = 0.736, Tmax = 1.000l = 1719
8191 measured reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.098All H-atom parameters refined
S = 1.01 w = 1/[σ2(Fo2) + (0.021P)2]
where P = (Fo2 + 2Fc2)/3
4294 reflections(Δ/σ)max < 0.001
371 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = 0.21 e Å3
Crystal data top
C19H23N7O3·H2OV = 1992.54 (16) Å3
Mr = 415.46Z = 4
Monoclinic, P21/nMo Kα radiation
a = 13.6666 (6) ŵ = 0.10 mm1
b = 9.6505 (5) ÅT = 293 K
c = 15.1672 (7) Å0.36 × 0.21 × 0.18 mm
β = 95.079 (5)°
Data collection top
Oxford Diffraction Xcalibur Sapphire3
diffractometer
4294 independent reflections
Absorption correction: multi-scan
(CrysAlis PRO; Oxford Diffraction, 2010)
2355 reflections with I > 2σ(I)
Tmin = 0.736, Tmax = 1.000Rint = 0.037
8191 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0490 restraints
wR(F2) = 0.098All H-atom parameters refined
S = 1.01Δρmax = 0.20 e Å3
4294 reflectionsΔρmin = 0.21 e Å3
371 parameters
Special details top

Experimental. CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.34.40 (release 27–08–2010 CrysAlis171. NET) (compiled Aug 27 2010,11:50:40) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N110.19775 (15)0.0425 (2)0.01077 (11)0.0427 (5)
C10.2630 (2)0.0354 (3)0.05892 (16)0.0480 (7)
C20.26399 (19)0.1779 (3)0.05208 (16)0.0441 (7)
N120.20100 (15)0.2465 (2)0.00223 (12)0.0428 (5)
C30.13474 (19)0.1694 (3)0.05044 (15)0.0383 (6)
C40.13362 (16)0.0265 (2)0.04413 (12)0.0305 (5)
C50.05833 (17)0.0572 (2)0.09960 (13)0.0335 (5)
O1A0.00271 (13)0.00090 (17)0.15713 (9)0.0533 (5)
N10.05941 (15)0.1925 (2)0.08103 (12)0.0367 (5)
C1G0.01094 (17)0.2917 (3)0.12154 (15)0.0350 (6)
C1B0.03100 (16)0.3948 (2)0.18618 (12)0.0296 (5)
C1A0.05447 (17)0.4929 (3)0.21817 (13)0.0337 (6)
C1'0.10941 (17)0.5496 (2)0.14363 (13)0.0326 (5)
O10.07365 (12)0.62770 (17)0.08624 (9)0.0462 (4)
C1B10.0647 (2)0.3143 (3)0.26593 (15)0.0388 (6)
C1G10.1149 (2)0.4068 (3)0.33001 (16)0.0506 (8)
C1D0.2007 (2)0.4852 (4)0.28350 (19)0.0567 (8)
C1G20.1699 (2)0.5664 (3)0.20428 (16)0.0454 (7)
C1B20.11899 (17)0.4734 (3)0.14114 (14)0.0341 (6)
N20.20278 (14)0.5018 (2)0.14512 (11)0.0370 (5)
N30.25854 (14)0.5292 (2)0.07469 (12)0.0389 (5)
C60.31863 (16)0.6379 (2)0.07557 (13)0.0327 (5)
O1B0.32636 (11)0.72574 (17)0.13399 (9)0.0464 (5)
C70.37834 (16)0.6443 (2)0.00259 (13)0.0337 (5)
C80.4356 (2)0.7578 (3)0.01617 (17)0.0510 (7)
N210.49065 (16)0.7673 (3)0.08426 (14)0.0627 (7)
C90.4863 (2)0.6581 (4)0.13822 (17)0.0582 (8)
C100.4294 (2)0.5454 (4)0.12545 (17)0.0573 (8)
N220.37462 (14)0.5351 (2)0.05707 (12)0.0475 (6)
O1W0.32394 (17)0.3516 (3)0.27109 (12)0.0600 (6)
H30.0836 (16)0.214 (2)0.0900 (12)0.048 (7)*
H2G0.0641 (15)0.237 (2)0.1528 (11)0.035 (6)*
H4B0.1653 (16)0.405 (2)0.1158 (12)0.046 (7)*
H3B0.0964 (14)0.527 (2)0.0892 (11)0.033 (6)*
H5G0.1252 (15)0.642 (2)0.2246 (11)0.031 (6)*
H1B0.0091 (17)0.267 (2)0.2964 (13)0.054 (7)*
H20.3140 (17)0.232 (2)0.0890 (13)0.056 (7)*
H2A0.1004 (15)0.444 (2)0.2593 (12)0.040 (6)*
H1G0.0373 (15)0.342 (2)0.0714 (12)0.044 (6)*
H10.3104 (17)0.009 (2)0.0977 (13)0.056 (8)*
H1A0.0323 (15)0.577 (2)0.2499 (12)0.045 (7)*
H1N0.1002 (18)0.216 (3)0.0337 (14)0.068 (9)*
H2B0.1110 (16)0.246 (2)0.2423 (12)0.046 (7)*
H80.4355 (15)0.840 (2)0.0264 (12)0.046 (7)*
H3N0.2530 (19)0.466 (3)0.0298 (14)0.074 (9)*
H6G0.2285 (16)0.610 (2)0.1709 (12)0.050 (7)*
H3G0.0662 (17)0.469 (3)0.3586 (13)0.056 (8)*
H1W0.370 (3)0.393 (3)0.304 (2)0.115 (16)*
H90.5276 (16)0.666 (2)0.1860 (13)0.050 (7)*
H1D0.2475 (18)0.417 (3)0.2651 (14)0.061 (9)*
H2N0.2321 (17)0.449 (3)0.1945 (13)0.062 (8)*
H4G0.1394 (17)0.347 (2)0.3749 (13)0.060 (7)*
H100.4308 (19)0.471 (3)0.1644 (15)0.082 (10)*
H2D0.2281 (19)0.556 (3)0.3246 (15)0.086 (9)*
H2W0.290 (2)0.299 (3)0.3002 (17)0.089 (12)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N110.0455 (13)0.0364 (12)0.0449 (10)0.0020 (11)0.0043 (10)0.0012 (10)
C10.0448 (17)0.0474 (19)0.0494 (14)0.0016 (15)0.0086 (13)0.0008 (14)
C20.0401 (15)0.0429 (17)0.0490 (14)0.0102 (15)0.0030 (13)0.0080 (13)
N120.0441 (13)0.0348 (13)0.0499 (11)0.0056 (11)0.0060 (10)0.0062 (10)
C30.0419 (15)0.0330 (15)0.0402 (12)0.0011 (13)0.0047 (12)0.0009 (12)
C40.0341 (13)0.0297 (14)0.0281 (10)0.0029 (12)0.0058 (10)0.0002 (10)
C50.0357 (14)0.0321 (14)0.0331 (11)0.0022 (13)0.0047 (10)0.0014 (11)
O1A0.0606 (12)0.0425 (11)0.0529 (9)0.0007 (10)0.0171 (9)0.0059 (9)
N10.0408 (12)0.0303 (12)0.0380 (10)0.0034 (11)0.0021 (10)0.0001 (10)
C1G0.0315 (13)0.0325 (14)0.0406 (13)0.0046 (13)0.0003 (11)0.0045 (12)
C1B0.0298 (12)0.0304 (13)0.0287 (10)0.0023 (11)0.0031 (9)0.0021 (10)
C1A0.0324 (13)0.0380 (15)0.0305 (11)0.0034 (12)0.0020 (10)0.0008 (11)
C1'0.0355 (14)0.0266 (13)0.0353 (11)0.0078 (12)0.0005 (11)0.0015 (10)
O10.0468 (10)0.0438 (11)0.0478 (8)0.0006 (9)0.0025 (8)0.0159 (8)
C1B10.0370 (15)0.0424 (17)0.0368 (12)0.0031 (14)0.0020 (12)0.0104 (12)
C1G10.0549 (19)0.061 (2)0.0387 (14)0.0053 (17)0.0163 (14)0.0101 (14)
C1D0.0493 (19)0.066 (2)0.0582 (17)0.0093 (19)0.0222 (15)0.0058 (17)
C1G20.0413 (16)0.0464 (18)0.0491 (14)0.0022 (15)0.0080 (13)0.0004 (14)
C1B20.0323 (13)0.0352 (15)0.0342 (12)0.0016 (12)0.0002 (11)0.0040 (11)
N20.0332 (11)0.0443 (13)0.0341 (10)0.0075 (11)0.0070 (9)0.0074 (10)
N30.0397 (12)0.0418 (13)0.0367 (10)0.0131 (11)0.0116 (9)0.0041 (10)
C60.0270 (12)0.0313 (14)0.0392 (12)0.0023 (12)0.0003 (10)0.0004 (11)
O1B0.0463 (10)0.0465 (11)0.0475 (8)0.0116 (9)0.0094 (8)0.0125 (8)
C70.0263 (12)0.0382 (15)0.0369 (11)0.0022 (12)0.0041 (10)0.0006 (11)
C80.0519 (17)0.0461 (17)0.0578 (15)0.0054 (16)0.0209 (14)0.0010 (14)
N210.0575 (15)0.0644 (18)0.0704 (14)0.0086 (14)0.0303 (13)0.0089 (13)
C90.0492 (17)0.074 (2)0.0545 (16)0.0012 (18)0.0233 (15)0.0046 (16)
C100.0540 (18)0.069 (2)0.0512 (15)0.0009 (18)0.0169 (14)0.0145 (16)
N220.0455 (13)0.0519 (15)0.0471 (11)0.0071 (12)0.0150 (10)0.0095 (11)
O1W0.0508 (13)0.0806 (18)0.0489 (11)0.0038 (13)0.0070 (11)0.0177 (12)
Geometric parameters (Å, º) top
N11—C11.333 (3)C1G1—C1D1.516 (4)
N11—C41.332 (3)C1G1—H3G0.97 (2)
C1—C21.379 (3)C1G1—H4G0.97 (2)
C1—H10.94 (2)C1D—C1G21.524 (3)
C2—N121.316 (3)C1D—H1D0.95 (2)
C2—H20.99 (2)C1D—H2D1.02 (3)
N12—C31.338 (3)C1G2—C1B21.524 (3)
C3—C41.383 (3)C1G2—H5G0.98 (2)
C3—H30.98 (2)C1G2—H6G1.00 (2)
C4—C51.505 (3)C1B2—H4B0.97 (2)
C5—O1A1.232 (2)C1B2—H3B1.014 (18)
C5—N11.335 (3)N2—N31.391 (2)
N1—C1G1.454 (3)N2—H2N0.96 (2)
N1—H1N0.90 (2)N3—C61.332 (3)
C1G—C1B1.542 (3)N3—H3N0.91 (2)
C1G—H2G0.99 (2)C6—O1B1.224 (2)
C1G—H1G0.997 (19)C6—C71.499 (3)
C1B—C1B21.531 (3)C7—N221.338 (3)
C1B—C1B11.542 (3)C7—C81.372 (3)
C1B—C1A1.548 (3)C8—N211.334 (3)
C1A—C1'1.514 (3)C8—H81.02 (2)
C1A—H2A0.97 (2)N21—C91.332 (3)
C1A—H1A1.00 (2)C9—C101.361 (4)
C1'—O11.220 (2)C9—H90.96 (2)
C1'—N21.355 (3)C10—N221.336 (3)
C1B1—C1G11.526 (3)C10—H100.93 (3)
C1B1—H1B0.97 (2)O1W—H1W0.86 (3)
C1B1—H2B0.96 (2)O1W—H2W0.84 (3)
C1—N11—C4115.6 (2)C1D—C1G1—H3G111.7 (14)
N11—C1—C2122.1 (3)C1B1—C1G1—H3G108.6 (13)
N11—C1—H1118.4 (15)C1D—C1G1—H4G108.8 (14)
C2—C1—H1119.5 (15)C1B1—C1G1—H4G107.5 (14)
N12—C2—C1122.6 (3)H3G—C1G1—H4G108.7 (17)
N12—C2—H2118.0 (13)C1G1—C1D—C1G2111.5 (2)
C1—C2—H2119.4 (14)C1G1—C1D—H1D105.3 (16)
C2—N12—C3115.8 (2)C1G2—C1D—H1D110.7 (14)
N12—C3—C4121.9 (2)C1G1—C1D—H2D111.2 (15)
N12—C3—H3119.9 (13)C1G2—C1D—H2D106.3 (15)
C4—C3—H3118.2 (13)H1D—C1D—H2D112 (2)
N11—C4—C3122.0 (2)C1D—C1G2—C1B2111.5 (2)
N11—C4—C5117.4 (2)C1D—C1G2—H5G109.9 (10)
C3—C4—C5120.5 (2)C1B2—C1G2—H5G109.3 (11)
O1A—C5—N1125.1 (2)C1D—C1G2—H6G110.5 (12)
O1A—C5—C4120.5 (2)C1B2—C1G2—H6G108.7 (12)
N1—C5—C4114.4 (2)H5G—C1G2—H6G106.9 (17)
C5—N1—C1G124.1 (2)C1G2—C1B2—C1B113.28 (18)
C5—N1—H1N114.1 (17)C1G2—C1B2—H4B109.3 (12)
C1G—N1—H1N120.9 (17)C1B—C1B2—H4B107.5 (13)
N1—C1G—C1B115.11 (18)C1G2—C1B2—H3B112.1 (11)
N1—C1G—H2G106.2 (12)C1B—C1B2—H3B108.6 (11)
C1B—C1G—H2G109.9 (10)H4B—C1B2—H3B105.7 (14)
N1—C1G—H1G105.6 (11)C1'—N2—N3120.11 (19)
C1B—C1G—H1G110.4 (12)C1'—N2—H2N121.3 (13)
H2G—C1G—H1G109.3 (16)N3—N2—H2N118.6 (13)
C1B2—C1B—C1B1108.79 (18)C6—N3—N2121.41 (19)
C1B2—C1B—C1G110.95 (17)C6—N3—H3N122.9 (16)
C1B1—C1B—C1G109.12 (19)N2—N3—H3N115.7 (16)
C1B2—C1B—C1A112.21 (19)O1B—C6—N3124.5 (2)
C1B1—C1B—C1A109.39 (17)O1B—C6—C7121.7 (2)
C1G—C1B—C1A106.33 (17)N3—C6—C7113.76 (19)
C1'—C1A—C1B113.41 (16)N22—C7—C8121.8 (2)
C1'—C1A—H2A108.7 (11)N22—C7—C6117.6 (2)
C1B—C1A—H2A109.4 (13)C8—C7—C6120.6 (2)
C1'—C1A—H1A105.0 (11)N21—C8—C7122.7 (3)
C1B—C1A—H1A113.1 (12)N21—C8—H8117.9 (11)
H2A—C1A—H1A106.8 (15)C7—C8—H8119.4 (11)
O1—C1'—N2122.6 (2)C9—N21—C8115.1 (2)
O1—C1'—C1A124.2 (2)N21—C9—C10122.6 (3)
N2—C1'—C1A113.2 (2)N21—C9—H9114.0 (13)
C1G1—C1B1—C1B112.8 (2)C10—C9—H9123.3 (14)
C1G1—C1B1—H1B110.4 (12)N22—C10—C9122.5 (3)
C1B—C1B1—H1B109.6 (12)N22—C10—H10118.9 (16)
C1G1—C1B1—H2B108.8 (12)C9—C10—H10118.6 (16)
C1B—C1B1—H2B106.6 (11)C10—N22—C7115.3 (2)
H1B—C1B1—H2B108.5 (18)H1W—O1W—H2W113 (3)
C1D—C1G1—C1B1111.6 (2)
C4—N11—C1—C20.2 (3)C1A—C1B—C1B1—C1G168.6 (3)
N11—C1—C2—N120.0 (4)C1B—C1B1—C1G1—C1D55.4 (3)
C1—C2—N12—C30.5 (3)C1B1—C1G1—C1D—C1G254.1 (4)
C2—N12—C3—C40.8 (3)C1G1—C1D—C1G2—C1B253.7 (4)
C1—N11—C4—C30.1 (3)C1D—C1G2—C1B2—C1B55.0 (3)
C1—N11—C4—C5179.77 (18)C1B1—C1B—C1B2—C1G254.2 (3)
N12—C3—C4—N110.6 (3)C1G—C1B—C1B2—C1G2174.3 (2)
N12—C3—C4—C5179.75 (17)C1A—C1B—C1B2—C1G267.0 (2)
N11—C4—C5—O1A173.53 (18)O1—C1'—N2—N37.0 (3)
C3—C4—C5—O1A6.8 (3)C1A—C1'—N2—N3171.38 (18)
N11—C4—C5—N15.7 (3)C1'—N2—N3—C693.9 (3)
C3—C4—C5—N1173.9 (2)N2—N3—C6—O1B4.2 (4)
O1A—C5—N1—C1G5.3 (3)N2—N3—C6—C7175.46 (18)
C4—C5—N1—C1G175.44 (17)O1B—C6—C7—N22171.5 (2)
C5—N1—C1G—C1B110.0 (2)N3—C6—C7—N228.2 (3)
N1—C1G—C1B—C1B255.6 (3)O1B—C6—C7—C87.5 (3)
N1—C1G—C1B—C1B164.3 (3)N3—C6—C7—C8172.9 (2)
N1—C1G—C1B—C1A177.87 (19)N22—C7—C8—N210.4 (4)
C1B2—C1B—C1A—C1'73.6 (2)C6—C7—C8—N21179.3 (2)
C1B1—C1B—C1A—C1'165.6 (2)C7—C8—N21—C90.2 (4)
C1G—C1B—C1A—C1'47.9 (3)C8—N21—C9—C100.5 (4)
C1B—C1A—C1'—O165.7 (3)N21—C9—C10—N221.0 (5)
C1B—C1A—C1'—N2112.6 (2)C9—C10—N22—C71.0 (4)
C1B2—C1B—C1B1—C1G154.3 (3)C8—C7—N22—C100.7 (3)
C1G—C1B—C1B1—C1G1175.4 (2)C6—C7—N22—C10179.7 (2)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1N···N110.90 (2)2.21 (3)2.673 (3)112 (2)
N1—H1N···O1i0.90 (2)2.42 (2)3.066 (2)130 (2)
O1W—H1W···O1Aii0.87 (3)2.13 (4)2.960 (3)161 (3)
N2—H2N···O1W0.96 (2)1.88 (2)2.817 (3)162 (2)
O1W—H2W···O1Biii0.84 (3)2.08 (3)2.879 (3)160 (3)
N3—H3N···N220.91 (3)2.31 (2)2.660 (3)103 (2)
N3—H3N···N12iv0.91 (3)2.27 (3)3.043 (3)142 (2)
C1G—H2G···O1A0.985 (19)2.46 (2)2.867 (3)104.5 (14)
C9—H9···O1Wv0.96 (2)2.51 (2)3.424 (3)160.1 (17)
C3—H3···O1vi0.98 (2)2.64 (2)3.459 (3)141 (2)
Symmetry codes: (i) x, y1, z; (ii) x1/2, y1/2, z1/2; (iii) x1/2, y+1/2, z1/2; (iv) x, y, z; (v) x1, y1, z; (vi) x, y+1, z.

Experimental details

Crystal data
Chemical formulaC19H23N7O3·H2O
Mr415.46
Crystal system, space groupMonoclinic, P21/n
Temperature (K)293
a, b, c (Å)13.6666 (6), 9.6505 (5), 15.1672 (7)
β (°) 95.079 (5)
V3)1992.54 (16)
Z4
Radiation typeMo Kα
µ (mm1)0.10
Crystal size (mm)0.36 × 0.21 × 0.18
Data collection
DiffractometerOxford Diffraction Xcalibur Sapphire3
diffractometer
Absorption correctionMulti-scan
(CrysAlis PRO; Oxford Diffraction, 2010)
Tmin, Tmax0.736, 1.000
No. of measured, independent and
observed [I > 2σ(I)] reflections
8191, 4294, 2355
Rint0.037
(sin θ/λ)max1)0.639
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.049, 0.098, 1.01
No. of reflections4294
No. of parameters371
H-atom treatmentAll H-atom parameters refined
Δρmax, Δρmin (e Å3)0.20, 0.21

Computer programs: CrysAlis PRO (Oxford Diffraction, 2010), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 2012), PLATON (Spek, 2009).

Selected torsion angles (º) top
C5—N1—C1G—C1B110.0 (2)C1B—C1A—C1'—N2112.6 (2)
N1—C1G—C1B—C1A177.87 (19)C1A—C1'—N2—N3171.38 (18)
C1G—C1B—C1A—C1'47.9 (3)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1N···N110.90 (2)2.21 (3)2.673 (3)112 (2)
N1—H1N···O1i0.90 (2)2.42 (2)3.066 (2)130 (2)
O1W—H1W···O1Aii0.87 (3)2.13 (4)2.960 (3)161 (3)
N2—H2N···O1W0.96 (2)1.88 (2)2.817 (3)162 (2)
O1W—H2W···O1Biii0.84 (3)2.08 (3)2.879 (3)160 (3)
N3—H3N···N220.91 (3)2.31 (2)2.660 (3)103 (2)
N3—H3N···N12iv0.91 (3)2.27 (3)3.043 (3)142 (2)
C1G—H2G···O1A0.985 (19)2.46 (2)2.867 (3)104.5 (14)
C9—H9···O1Wv0.96 (2)2.51 (2)3.424 (3)160.1 (17)
C3—H3···O1vi0.98 (2)2.64 (2)3.459 (3)141 (2)
Symmetry codes: (i) x, y1, z; (ii) x1/2, y1/2, z1/2; (iii) x1/2, y+1/2, z1/2; (iv) x, y, z; (v) x1, y1, z; (vi) x, y+1, z.
Centriod–centriod distances in (I) (Å) top
c1···c2 = c3···c4 = c6···c7 = c8···c96.34i
c2···c3 = c5···c65.78i
c4···c5 = c9···c10 = c2···c75.57ii
c7···c8 = c10···c13.98iii
Notes: (i) symmetry related by (x, y, z) and (-x, -y, -z); (ii) symmetry related by (x, y, z) and (-x, -y+1, -z); (iii) symmetry related by (x, y, z) and (-x+1, -y+1, -z).
 

Follow Acta Cryst. C
Sign up for e-alerts
Follow Acta Cryst. on Twitter
Follow us on facebook
Sign up for RSS feeds