Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S2053229614015587/yf3062sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S2053229614015587/yf3062Isup2.hkl |
CCDC reference: 1012037
Gabapentin {2-[1-(aminomethyl)cyclohexyl]acetic acid, Gpn} is a β,β-disubstituted γ-amino acid, which has has been used as an antiepileptic drug, as well as employed for the treatment of neuropathic pain (Wheeler, 2002; Stefan & Feuerstein, 2007; Rosenberg et al., 1997; Maneuf et al., 2003). Gabapentin has been extensively studied for the occurrence of polymorphic crystal forms (Ibers, 2001; Reece & Levendis, 2008). It has been widely used in the construction of hybrid peptides, as well as in oligomers (Vasudev et al., 2009; Balaram, 2010). In order to study the influence of pyrolidine rings on the conformation of gabapentin, we synthesized N-[(1-{2-oxo-2-[2-(pyrazin-2-ylcarbonyl)hydrazin-1-yl]ethyl}cyclohexyl)methyl]pyrazine-2-carboxamide monohydrate (Pyr-Gpn-NN—NH-Pyr.H2O; Pyr is pyrazol-2-ylcarbonyl), (I), in which Pyr groups are positioned at the N- and C-termini of the Gpn residue. In our previous study, a gauche conformation was reported for the Gpn residue in Pyr-Gpn-OH, in which only the N-terminus is protected by a Pyr group (Wani et al., 2013).
Pyrazine carboxylic acid (3.0 mmol, 372.0 mg) was dissolved in dry dichlomethane (CH2Cl2) and then added to N-methylmorpholine (200 µl) followed by Gpn–OMe·HCl (3.0 mmol, 666.5 mg) and EDCI·HCl (3.0 mmol, 576.0 mg) under ice-cold conditions. The reaction mixture was stirred at room temperature for 12 h. After completion of the reaction, water was added to the reaction mixture and extracted with CH2Cl2 (3 × 5.0 ml). The combined organic layer was washed with 2 N HCl (2 × 5.0 ml), Na2CO3 (2 × 5.0 ml) and brine solution (5.0 ml). The organic layer was passed over anhydrous Na2SO4 and evaporated under vacuum to give Pyr-Gpn-OMe (yield 610.0 mg, 69.8%).
Pyr-Gpn-OMe (1.0 mmol, 291.0 mg) was dissolved in dry methanol (1.0 ml) and added to hydrazine hydrate (100 µl). The reaction mixture was stirred for 5 h at room temperature. After completion of the reaction, the solvent was evaporated under vacuum to dryness and water (5.0 ml) was added. The product was extracted with ethyl acetate (3 × 5.0 ml), washed with brine solution (5.0 ml), passed over anhydrous Na2SO4 and evaporated under vacuum to give Pyr-Gpn-NH—NH2 (yield 200 mg, 68.72%).
Pyr-COOH (0.5 mmol, 62.0 mg) was dissolved in dry dichloromethane followed by the addition of N-methylmorpholine (50 µl), EDCI (0.5 mmol, 96.0 mg) and Pyr-Gpn-NH—NH2 (0.5 mmol, 145.0 mg). The reaction mixture was stirred for 16 h. The solvent was evaporated completely and water was added. The product was extracted with ethyl acetate (3 × 5.0 ml), followed by washing with 2 N HCl (1 × 5.0 ml), Na2CO3 (5.0 ml) and brine solution (5.0 ml). The organic layer was passed over anhydrous Na2SO4 and evaporated under vacuum to dryness to yield the product, which was purified by column chromatography (yield 68.91%, 100 mg). Pyr-Gpn-NN—NH-Pyr was crystallized by slow evaporation from an methanol–water (9:1 v/v) mixture as the monohydrate.
Crystal data, data collection and structure refinement details are summarized in Table 1. H atoms were located in a difference Fourier map and both their coordinates and Uiso(H) values were refined.
The conformation of the molecule of (I) (Fig. 1a) is stabilized by intramolecular (C5) N—H···N hydrogen bonds (N1—H1N···N11 and N3—H3N···N22) and a weak C—H···O interaction between the Gpn CγH and Pyr groups (C3—H3···O1iv; see Table 3 for details and symmetry code). A similar kind of C5 N—H···H and C—H···O interaction was observed in the crystal structure of Pyr-Gpn-OH (Wani et al., 2013). Weak C—H···O interactions play a crucial role in the control of the molecular conformation (Venugopalan & Kishore, 2013) and the packing of molecules in the crystal lattice (Desiraju, 1996; Steiner, 1997; Lo Prestil et al., 2006). The Gpn residue adopts a trans–gauche (tg-) conformation around the Cγ—Cβ (θ1) and Cβ—Cα (θ2) bonds. The backbone dihedral angles are listed in Table 2. Generally, the values of torsion angles θ1 and θ2 of Gpn residue in protected derivatives, as well as in peptide sequences (Vasudev et al., 2009; Balaram, 2010; Vasudev et al., 2011), are restricted to the gauche–gauche (gg) conformation due to the substitution of the cyclohexyl ring at the β-position. In the case of the octapeptide, viz. Boc-Leu-Phe-Val-Aib-Gpn-Leu-Phe-Val-OMe (Chatterjee et al., 2009), the Gpn residue favours a gauche–trans (gt) conformation. To the best of our knowledge, this is the only example of a gt conformation for a Gpn residue in a peptide reported in the literature. Fig. 1(b) shows the L-shaped structure of the molecule. The cyclohexyl ring adopts a classical chair conformation, with an equatorial orientation of the aminomethyl group [the corresponding puckering parameters are Q = 0.555 (3) Å, θ = 1.0 (3)° and ϕ = 35 (17)° (Cremer & Pople, 1975)].
Fig. 2 shows the hydrogen-bond interactions formed by the molecule. The dimer around the centre of inversion is stabilized by a pair of N—H···O hydrogen bonds, i.e. N1—H1N···O1(-x, -y-1, -z). The hydrogen-bond parameters are listed in Table 3. The water molecule forms a hydrogen bond with amide atom N2 and also bridges the symmetry-related molecules O1A at (-x-1/2, y-1/2, -z-1/2) and O1B at (-x-1/2, y+1/2, -z-1/2) through O—H···O(carbonyl) hydrogen bonds. In addtion to these hydrgen bonds, a strong N—H···N hydrogen bond between atom N3 and pyrazine atom N12 [N3—H3N···N12(-x, -y, -z)] is present, together with weak C—H···O hydrogen bonds between atoms C3 and C9 of the pyrazine ring and carbonyl atom O1 and water atom O1w, respectively [C9—H9···O1w(-x-1, -y-1, -z) and C3—H3···O1(x, y+1, z)]. Fig. 3 illustrates the spatial arrangement of the pyrazine rings in the crystal lattice. The pyrazine rings of symmetry-related molecules come close in space and the distance between the centroids are listed in Table 3. It can been seen that only the distance between centroids c1 and c10 and between c7 and c8 fall below the 4Å cut-off for stacking π–π interactions (Burley & Petsko, 1985, 1988; Ma et al., 2010). Fig. 4 shows the packing of the molecules of (I) in the crystal along the b axis, held together by strong N—N···N, O—H···O and N—H···O hydrogen bonds, and by weaker C—H···O interactions and a network of π–π interactions.
The present study provides the first example of gabapentin (Gpn) with a trans–gauche (tg) conformation, which may be useful in the constuction of folded structures in designed peptide sequences.
Data collection: CrysAlis PRO (Oxford Diffraction, 2010); cell refinement: CrysAlis PRO (Oxford Diffraction, 2010); data reduction: CrysAlis PRO (Oxford Diffraction, 2010); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: PLATON (Spek, 2009).
C19H23N7O3·H2O | F(000) = 880 |
Mr = 415.46 | Dx = 1.385 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 2317 reflections |
a = 13.6666 (6) Å | θ = 3.7–27.0° |
b = 9.6505 (5) Å | µ = 0.10 mm−1 |
c = 15.1672 (7) Å | T = 293 K |
β = 95.079 (5)° | Rod, color less |
V = 1992.54 (16) Å3 | 0.36 × 0.21 × 0.18 mm |
Z = 4 |
Oxford Diffraction Xcalibur Sapphire3 diffractometer | 4294 independent reflections |
Radiation source: fine-focus sealed tube | 2355 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.037 |
Detector resolution: 16.1049 pixels mm-1 | θmax = 27.0°, θmin = 3.6° |
ω scan | h = −16→17 |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) | k = −10→12 |
Tmin = 0.736, Tmax = 1.000 | l = −17→19 |
8191 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.049 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.098 | All H-atom parameters refined |
S = 1.01 | w = 1/[σ2(Fo2) + (0.021P)2] where P = (Fo2 + 2Fc2)/3 |
4294 reflections | (Δ/σ)max < 0.001 |
371 parameters | Δρmax = 0.20 e Å−3 |
0 restraints | Δρmin = −0.21 e Å−3 |
C19H23N7O3·H2O | V = 1992.54 (16) Å3 |
Mr = 415.46 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 13.6666 (6) Å | µ = 0.10 mm−1 |
b = 9.6505 (5) Å | T = 293 K |
c = 15.1672 (7) Å | 0.36 × 0.21 × 0.18 mm |
β = 95.079 (5)° |
Oxford Diffraction Xcalibur Sapphire3 diffractometer | 4294 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) | 2355 reflections with I > 2σ(I) |
Tmin = 0.736, Tmax = 1.000 | Rint = 0.037 |
8191 measured reflections |
R[F2 > 2σ(F2)] = 0.049 | 0 restraints |
wR(F2) = 0.098 | All H-atom parameters refined |
S = 1.01 | Δρmax = 0.20 e Å−3 |
4294 reflections | Δρmin = −0.21 e Å−3 |
371 parameters |
Experimental. CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.34.40 (release 27–08–2010 CrysAlis171. NET) (compiled Aug 27 2010,11:50:40) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N11 | 0.19775 (15) | −0.0425 (2) | 0.01077 (11) | 0.0427 (5) | |
C1 | 0.2630 (2) | 0.0354 (3) | 0.05892 (16) | 0.0480 (7) | |
C2 | 0.26399 (19) | 0.1779 (3) | 0.05208 (16) | 0.0441 (7) | |
N12 | 0.20100 (15) | 0.2465 (2) | −0.00223 (12) | 0.0428 (5) | |
C3 | 0.13474 (19) | 0.1694 (3) | −0.05044 (15) | 0.0383 (6) | |
C4 | 0.13362 (16) | 0.0265 (2) | −0.04413 (12) | 0.0305 (5) | |
C5 | 0.05833 (17) | −0.0572 (2) | −0.09960 (13) | 0.0335 (5) | |
O1A | 0.00271 (13) | −0.00090 (17) | −0.15713 (9) | 0.0533 (5) | |
N1 | 0.05941 (15) | −0.1925 (2) | −0.08103 (12) | 0.0367 (5) | |
C1G | −0.01094 (17) | −0.2917 (3) | −0.12154 (15) | 0.0350 (6) | |
C1B | 0.03100 (16) | −0.3948 (2) | −0.18618 (12) | 0.0296 (5) | |
C1A | −0.05447 (17) | −0.4929 (3) | −0.21817 (13) | 0.0337 (6) | |
C1' | −0.10941 (17) | −0.5496 (2) | −0.14363 (13) | 0.0326 (5) | |
O1 | −0.07365 (12) | −0.62770 (17) | −0.08624 (9) | 0.0462 (4) | |
C1B1 | 0.0647 (2) | −0.3143 (3) | −0.26593 (15) | 0.0388 (6) | |
C1G1 | 0.1149 (2) | −0.4068 (3) | −0.33001 (16) | 0.0506 (8) | |
C1D | 0.2007 (2) | −0.4852 (4) | −0.28350 (19) | 0.0567 (8) | |
C1G2 | 0.1699 (2) | −0.5664 (3) | −0.20428 (16) | 0.0454 (7) | |
C1B2 | 0.11899 (17) | −0.4734 (3) | −0.14114 (14) | 0.0341 (6) | |
N2 | −0.20278 (14) | −0.5018 (2) | −0.14512 (11) | 0.0370 (5) | |
N3 | −0.25854 (14) | −0.5292 (2) | −0.07469 (12) | 0.0389 (5) | |
C6 | −0.31863 (16) | −0.6379 (2) | −0.07557 (13) | 0.0327 (5) | |
O1B | −0.32636 (11) | −0.72574 (17) | −0.13399 (9) | 0.0464 (5) | |
C7 | −0.37834 (16) | −0.6443 (2) | 0.00259 (13) | 0.0337 (5) | |
C8 | −0.4356 (2) | −0.7578 (3) | 0.01617 (17) | 0.0510 (7) | |
N21 | −0.49065 (16) | −0.7673 (3) | 0.08426 (14) | 0.0627 (7) | |
C9 | −0.4863 (2) | −0.6581 (4) | 0.13822 (17) | 0.0582 (8) | |
C10 | −0.4294 (2) | −0.5454 (4) | 0.12545 (17) | 0.0573 (8) | |
N22 | −0.37462 (14) | −0.5351 (2) | 0.05707 (12) | 0.0475 (6) | |
O1W | −0.32394 (17) | −0.3516 (3) | −0.27109 (12) | 0.0600 (6) | |
H3 | 0.0836 (16) | 0.214 (2) | −0.0900 (12) | 0.048 (7)* | |
H2G | −0.0641 (15) | −0.237 (2) | −0.1528 (11) | 0.035 (6)* | |
H4B | 0.1653 (16) | −0.405 (2) | −0.1158 (12) | 0.046 (7)* | |
H3B | 0.0964 (14) | −0.527 (2) | −0.0892 (11) | 0.033 (6)* | |
H5G | 0.1252 (15) | −0.642 (2) | −0.2246 (11) | 0.031 (6)* | |
H1B | 0.0091 (17) | −0.267 (2) | −0.2964 (13) | 0.054 (7)* | |
H2 | 0.3140 (17) | 0.232 (2) | 0.0890 (13) | 0.056 (7)* | |
H2A | −0.1004 (15) | −0.444 (2) | −0.2593 (12) | 0.040 (6)* | |
H1G | −0.0373 (15) | −0.342 (2) | −0.0714 (12) | 0.044 (6)* | |
H1 | 0.3104 (17) | −0.009 (2) | 0.0977 (13) | 0.056 (8)* | |
H1A | −0.0323 (15) | −0.577 (2) | −0.2499 (12) | 0.045 (7)* | |
H1N | 0.1002 (18) | −0.216 (3) | −0.0337 (14) | 0.068 (9)* | |
H2B | 0.1110 (16) | −0.246 (2) | −0.2423 (12) | 0.046 (7)* | |
H8 | −0.4355 (15) | −0.840 (2) | −0.0264 (12) | 0.046 (7)* | |
H3N | −0.2530 (19) | −0.466 (3) | −0.0298 (14) | 0.074 (9)* | |
H6G | 0.2285 (16) | −0.610 (2) | −0.1709 (12) | 0.050 (7)* | |
H3G | 0.0662 (17) | −0.469 (3) | −0.3586 (13) | 0.056 (8)* | |
H1W | −0.370 (3) | −0.393 (3) | −0.304 (2) | 0.115 (16)* | |
H9 | −0.5276 (16) | −0.666 (2) | 0.1860 (13) | 0.050 (7)* | |
H1D | 0.2475 (18) | −0.417 (3) | −0.2651 (14) | 0.061 (9)* | |
H2N | −0.2321 (17) | −0.449 (3) | −0.1945 (13) | 0.062 (8)* | |
H4G | 0.1394 (17) | −0.347 (2) | −0.3749 (13) | 0.060 (7)* | |
H10 | −0.4308 (19) | −0.471 (3) | 0.1644 (15) | 0.082 (10)* | |
H2D | 0.2281 (19) | −0.556 (3) | −0.3246 (15) | 0.086 (9)* | |
H2W | −0.290 (2) | −0.299 (3) | −0.3002 (17) | 0.089 (12)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N11 | 0.0455 (13) | 0.0364 (12) | 0.0449 (10) | −0.0020 (11) | −0.0043 (10) | 0.0012 (10) |
C1 | 0.0448 (17) | 0.0474 (19) | 0.0494 (14) | −0.0016 (15) | −0.0086 (13) | 0.0008 (14) |
C2 | 0.0401 (15) | 0.0429 (17) | 0.0490 (14) | −0.0102 (15) | 0.0030 (13) | −0.0080 (13) |
N12 | 0.0441 (13) | 0.0348 (13) | 0.0499 (11) | −0.0056 (11) | 0.0060 (10) | −0.0062 (10) |
C3 | 0.0419 (15) | 0.0330 (15) | 0.0402 (12) | 0.0011 (13) | 0.0047 (12) | −0.0009 (12) |
C4 | 0.0341 (13) | 0.0297 (14) | 0.0281 (10) | −0.0029 (12) | 0.0058 (10) | 0.0002 (10) |
C5 | 0.0357 (14) | 0.0321 (14) | 0.0331 (11) | −0.0022 (13) | 0.0047 (10) | −0.0014 (11) |
O1A | 0.0606 (12) | 0.0425 (11) | 0.0529 (9) | 0.0007 (10) | −0.0171 (9) | 0.0059 (9) |
N1 | 0.0408 (12) | 0.0303 (12) | 0.0380 (10) | −0.0034 (11) | −0.0021 (10) | −0.0001 (10) |
C1G | 0.0315 (13) | 0.0325 (14) | 0.0406 (13) | −0.0046 (13) | 0.0003 (11) | −0.0045 (12) |
C1B | 0.0298 (12) | 0.0304 (13) | 0.0287 (10) | −0.0023 (11) | 0.0031 (9) | 0.0021 (10) |
C1A | 0.0324 (13) | 0.0380 (15) | 0.0305 (11) | −0.0034 (12) | 0.0020 (10) | −0.0008 (11) |
C1' | 0.0355 (14) | 0.0266 (13) | 0.0353 (11) | −0.0078 (12) | 0.0005 (11) | −0.0015 (10) |
O1 | 0.0468 (10) | 0.0438 (11) | 0.0478 (8) | −0.0006 (9) | 0.0025 (8) | 0.0159 (8) |
C1B1 | 0.0370 (15) | 0.0424 (17) | 0.0368 (12) | −0.0031 (14) | 0.0020 (12) | 0.0104 (12) |
C1G1 | 0.0549 (19) | 0.061 (2) | 0.0387 (14) | −0.0053 (17) | 0.0163 (14) | 0.0101 (14) |
C1D | 0.0493 (19) | 0.066 (2) | 0.0582 (17) | 0.0093 (19) | 0.0222 (15) | 0.0058 (17) |
C1G2 | 0.0413 (16) | 0.0464 (18) | 0.0491 (14) | 0.0022 (15) | 0.0080 (13) | 0.0004 (14) |
C1B2 | 0.0323 (13) | 0.0352 (15) | 0.0342 (12) | −0.0016 (12) | 0.0002 (11) | 0.0040 (11) |
N2 | 0.0332 (11) | 0.0443 (13) | 0.0341 (10) | −0.0075 (11) | 0.0070 (9) | 0.0074 (10) |
N3 | 0.0397 (12) | 0.0418 (13) | 0.0367 (10) | −0.0131 (11) | 0.0116 (9) | −0.0041 (10) |
C6 | 0.0270 (12) | 0.0313 (14) | 0.0392 (12) | −0.0023 (12) | 0.0003 (10) | 0.0004 (11) |
O1B | 0.0463 (10) | 0.0465 (11) | 0.0475 (8) | −0.0116 (9) | 0.0094 (8) | −0.0125 (8) |
C7 | 0.0263 (12) | 0.0382 (15) | 0.0369 (11) | −0.0022 (12) | 0.0041 (10) | 0.0006 (11) |
C8 | 0.0519 (17) | 0.0461 (17) | 0.0578 (15) | −0.0054 (16) | 0.0209 (14) | −0.0010 (14) |
N21 | 0.0575 (15) | 0.0644 (18) | 0.0704 (14) | −0.0086 (14) | 0.0303 (13) | 0.0089 (13) |
C9 | 0.0492 (17) | 0.074 (2) | 0.0545 (16) | −0.0012 (18) | 0.0233 (15) | 0.0046 (16) |
C10 | 0.0540 (18) | 0.069 (2) | 0.0512 (15) | 0.0009 (18) | 0.0169 (14) | −0.0145 (16) |
N22 | 0.0455 (13) | 0.0519 (15) | 0.0471 (11) | −0.0071 (12) | 0.0150 (10) | −0.0095 (11) |
O1W | 0.0508 (13) | 0.0806 (18) | 0.0489 (11) | 0.0038 (13) | 0.0070 (11) | 0.0177 (12) |
N11—C1 | 1.333 (3) | C1G1—C1D | 1.516 (4) |
N11—C4 | 1.332 (3) | C1G1—H3G | 0.97 (2) |
C1—C2 | 1.379 (3) | C1G1—H4G | 0.97 (2) |
C1—H1 | 0.94 (2) | C1D—C1G2 | 1.524 (3) |
C2—N12 | 1.316 (3) | C1D—H1D | 0.95 (2) |
C2—H2 | 0.99 (2) | C1D—H2D | 1.02 (3) |
N12—C3 | 1.338 (3) | C1G2—C1B2 | 1.524 (3) |
C3—C4 | 1.383 (3) | C1G2—H5G | 0.98 (2) |
C3—H3 | 0.98 (2) | C1G2—H6G | 1.00 (2) |
C4—C5 | 1.505 (3) | C1B2—H4B | 0.97 (2) |
C5—O1A | 1.232 (2) | C1B2—H3B | 1.014 (18) |
C5—N1 | 1.335 (3) | N2—N3 | 1.391 (2) |
N1—C1G | 1.454 (3) | N2—H2N | 0.96 (2) |
N1—H1N | 0.90 (2) | N3—C6 | 1.332 (3) |
C1G—C1B | 1.542 (3) | N3—H3N | 0.91 (2) |
C1G—H2G | 0.99 (2) | C6—O1B | 1.224 (2) |
C1G—H1G | 0.997 (19) | C6—C7 | 1.499 (3) |
C1B—C1B2 | 1.531 (3) | C7—N22 | 1.338 (3) |
C1B—C1B1 | 1.542 (3) | C7—C8 | 1.372 (3) |
C1B—C1A | 1.548 (3) | C8—N21 | 1.334 (3) |
C1A—C1' | 1.514 (3) | C8—H8 | 1.02 (2) |
C1A—H2A | 0.97 (2) | N21—C9 | 1.332 (3) |
C1A—H1A | 1.00 (2) | C9—C10 | 1.361 (4) |
C1'—O1 | 1.220 (2) | C9—H9 | 0.96 (2) |
C1'—N2 | 1.355 (3) | C10—N22 | 1.336 (3) |
C1B1—C1G1 | 1.526 (3) | C10—H10 | 0.93 (3) |
C1B1—H1B | 0.97 (2) | O1W—H1W | 0.86 (3) |
C1B1—H2B | 0.96 (2) | O1W—H2W | 0.84 (3) |
C1—N11—C4 | 115.6 (2) | C1D—C1G1—H3G | 111.7 (14) |
N11—C1—C2 | 122.1 (3) | C1B1—C1G1—H3G | 108.6 (13) |
N11—C1—H1 | 118.4 (15) | C1D—C1G1—H4G | 108.8 (14) |
C2—C1—H1 | 119.5 (15) | C1B1—C1G1—H4G | 107.5 (14) |
N12—C2—C1 | 122.6 (3) | H3G—C1G1—H4G | 108.7 (17) |
N12—C2—H2 | 118.0 (13) | C1G1—C1D—C1G2 | 111.5 (2) |
C1—C2—H2 | 119.4 (14) | C1G1—C1D—H1D | 105.3 (16) |
C2—N12—C3 | 115.8 (2) | C1G2—C1D—H1D | 110.7 (14) |
N12—C3—C4 | 121.9 (2) | C1G1—C1D—H2D | 111.2 (15) |
N12—C3—H3 | 119.9 (13) | C1G2—C1D—H2D | 106.3 (15) |
C4—C3—H3 | 118.2 (13) | H1D—C1D—H2D | 112 (2) |
N11—C4—C3 | 122.0 (2) | C1D—C1G2—C1B2 | 111.5 (2) |
N11—C4—C5 | 117.4 (2) | C1D—C1G2—H5G | 109.9 (10) |
C3—C4—C5 | 120.5 (2) | C1B2—C1G2—H5G | 109.3 (11) |
O1A—C5—N1 | 125.1 (2) | C1D—C1G2—H6G | 110.5 (12) |
O1A—C5—C4 | 120.5 (2) | C1B2—C1G2—H6G | 108.7 (12) |
N1—C5—C4 | 114.4 (2) | H5G—C1G2—H6G | 106.9 (17) |
C5—N1—C1G | 124.1 (2) | C1G2—C1B2—C1B | 113.28 (18) |
C5—N1—H1N | 114.1 (17) | C1G2—C1B2—H4B | 109.3 (12) |
C1G—N1—H1N | 120.9 (17) | C1B—C1B2—H4B | 107.5 (13) |
N1—C1G—C1B | 115.11 (18) | C1G2—C1B2—H3B | 112.1 (11) |
N1—C1G—H2G | 106.2 (12) | C1B—C1B2—H3B | 108.6 (11) |
C1B—C1G—H2G | 109.9 (10) | H4B—C1B2—H3B | 105.7 (14) |
N1—C1G—H1G | 105.6 (11) | C1'—N2—N3 | 120.11 (19) |
C1B—C1G—H1G | 110.4 (12) | C1'—N2—H2N | 121.3 (13) |
H2G—C1G—H1G | 109.3 (16) | N3—N2—H2N | 118.6 (13) |
C1B2—C1B—C1B1 | 108.79 (18) | C6—N3—N2 | 121.41 (19) |
C1B2—C1B—C1G | 110.95 (17) | C6—N3—H3N | 122.9 (16) |
C1B1—C1B—C1G | 109.12 (19) | N2—N3—H3N | 115.7 (16) |
C1B2—C1B—C1A | 112.21 (19) | O1B—C6—N3 | 124.5 (2) |
C1B1—C1B—C1A | 109.39 (17) | O1B—C6—C7 | 121.7 (2) |
C1G—C1B—C1A | 106.33 (17) | N3—C6—C7 | 113.76 (19) |
C1'—C1A—C1B | 113.41 (16) | N22—C7—C8 | 121.8 (2) |
C1'—C1A—H2A | 108.7 (11) | N22—C7—C6 | 117.6 (2) |
C1B—C1A—H2A | 109.4 (13) | C8—C7—C6 | 120.6 (2) |
C1'—C1A—H1A | 105.0 (11) | N21—C8—C7 | 122.7 (3) |
C1B—C1A—H1A | 113.1 (12) | N21—C8—H8 | 117.9 (11) |
H2A—C1A—H1A | 106.8 (15) | C7—C8—H8 | 119.4 (11) |
O1—C1'—N2 | 122.6 (2) | C9—N21—C8 | 115.1 (2) |
O1—C1'—C1A | 124.2 (2) | N21—C9—C10 | 122.6 (3) |
N2—C1'—C1A | 113.2 (2) | N21—C9—H9 | 114.0 (13) |
C1G1—C1B1—C1B | 112.8 (2) | C10—C9—H9 | 123.3 (14) |
C1G1—C1B1—H1B | 110.4 (12) | N22—C10—C9 | 122.5 (3) |
C1B—C1B1—H1B | 109.6 (12) | N22—C10—H10 | 118.9 (16) |
C1G1—C1B1—H2B | 108.8 (12) | C9—C10—H10 | 118.6 (16) |
C1B—C1B1—H2B | 106.6 (11) | C10—N22—C7 | 115.3 (2) |
H1B—C1B1—H2B | 108.5 (18) | H1W—O1W—H2W | 113 (3) |
C1D—C1G1—C1B1 | 111.6 (2) | ||
C4—N11—C1—C2 | −0.2 (3) | C1A—C1B—C1B1—C1G1 | −68.6 (3) |
N11—C1—C2—N12 | 0.0 (4) | C1B—C1B1—C1G1—C1D | −55.4 (3) |
C1—C2—N12—C3 | 0.5 (3) | C1B1—C1G1—C1D—C1G2 | 54.1 (4) |
C2—N12—C3—C4 | −0.8 (3) | C1G1—C1D—C1G2—C1B2 | −53.7 (4) |
C1—N11—C4—C3 | −0.1 (3) | C1D—C1G2—C1B2—C1B | 55.0 (3) |
C1—N11—C4—C5 | −179.77 (18) | C1B1—C1B—C1B2—C1G2 | −54.2 (3) |
N12—C3—C4—N11 | 0.6 (3) | C1G—C1B—C1B2—C1G2 | −174.3 (2) |
N12—C3—C4—C5 | −179.75 (17) | C1A—C1B—C1B2—C1G2 | 67.0 (2) |
N11—C4—C5—O1A | −173.53 (18) | O1—C1'—N2—N3 | 7.0 (3) |
C3—C4—C5—O1A | 6.8 (3) | C1A—C1'—N2—N3 | −171.38 (18) |
N11—C4—C5—N1 | 5.7 (3) | C1'—N2—N3—C6 | −93.9 (3) |
C3—C4—C5—N1 | −173.9 (2) | N2—N3—C6—O1B | 4.2 (4) |
O1A—C5—N1—C1G | −5.3 (3) | N2—N3—C6—C7 | −175.46 (18) |
C4—C5—N1—C1G | 175.44 (17) | O1B—C6—C7—N22 | −171.5 (2) |
C5—N1—C1G—C1B | 110.0 (2) | N3—C6—C7—N22 | 8.2 (3) |
N1—C1G—C1B—C1B2 | 55.6 (3) | O1B—C6—C7—C8 | 7.5 (3) |
N1—C1G—C1B—C1B1 | −64.3 (3) | N3—C6—C7—C8 | −172.9 (2) |
N1—C1G—C1B—C1A | 177.87 (19) | N22—C7—C8—N21 | −0.4 (4) |
C1B2—C1B—C1A—C1' | 73.6 (2) | C6—C7—C8—N21 | −179.3 (2) |
C1B1—C1B—C1A—C1' | −165.6 (2) | C7—C8—N21—C9 | 0.2 (4) |
C1G—C1B—C1A—C1' | −47.9 (3) | C8—N21—C9—C10 | −0.5 (4) |
C1B—C1A—C1'—O1 | −65.7 (3) | N21—C9—C10—N22 | 1.0 (5) |
C1B—C1A—C1'—N2 | 112.6 (2) | C9—C10—N22—C7 | −1.0 (4) |
C1B2—C1B—C1B1—C1G1 | 54.3 (3) | C8—C7—N22—C10 | 0.7 (3) |
C1G—C1B—C1B1—C1G1 | 175.4 (2) | C6—C7—N22—C10 | 179.7 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···N11 | 0.90 (2) | 2.21 (3) | 2.673 (3) | 112 (2) |
N1—H1N···O1i | 0.90 (2) | 2.42 (2) | 3.066 (2) | 130 (2) |
O1W—H1W···O1Aii | 0.87 (3) | 2.13 (4) | 2.960 (3) | 161 (3) |
N2—H2N···O1W | 0.96 (2) | 1.88 (2) | 2.817 (3) | 162 (2) |
O1W—H2W···O1Biii | 0.84 (3) | 2.08 (3) | 2.879 (3) | 160 (3) |
N3—H3N···N22 | 0.91 (3) | 2.31 (2) | 2.660 (3) | 103 (2) |
N3—H3N···N12iv | 0.91 (3) | 2.27 (3) | 3.043 (3) | 142 (2) |
C1G—H2G···O1A | 0.985 (19) | 2.46 (2) | 2.867 (3) | 104.5 (14) |
C9—H9···O1Wv | 0.96 (2) | 2.51 (2) | 3.424 (3) | 160.1 (17) |
C3—H3···O1vi | 0.98 (2) | 2.64 (2) | 3.459 (3) | 141 (2) |
Symmetry codes: (i) −x, −y−1, −z; (ii) −x−1/2, y−1/2, −z−1/2; (iii) −x−1/2, y+1/2, −z−1/2; (iv) −x, −y, −z; (v) −x−1, −y−1, −z; (vi) x, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | C19H23N7O3·H2O |
Mr | 415.46 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 293 |
a, b, c (Å) | 13.6666 (6), 9.6505 (5), 15.1672 (7) |
β (°) | 95.079 (5) |
V (Å3) | 1992.54 (16) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.36 × 0.21 × 0.18 |
Data collection | |
Diffractometer | Oxford Diffraction Xcalibur Sapphire3 diffractometer |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) |
Tmin, Tmax | 0.736, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8191, 4294, 2355 |
Rint | 0.037 |
(sin θ/λ)max (Å−1) | 0.639 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.049, 0.098, 1.01 |
No. of reflections | 4294 |
No. of parameters | 371 |
H-atom treatment | All H-atom parameters refined |
Δρmax, Δρmin (e Å−3) | 0.20, −0.21 |
Computer programs: CrysAlis PRO (Oxford Diffraction, 2010), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 2012), PLATON (Spek, 2009).
C5—N1—C1G—C1B | 110.0 (2) | C1B—C1A—C1'—N2 | 112.6 (2) |
N1—C1G—C1B—C1A | 177.87 (19) | C1A—C1'—N2—N3 | −171.38 (18) |
C1G—C1B—C1A—C1' | −47.9 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···N11 | 0.90 (2) | 2.21 (3) | 2.673 (3) | 112 (2) |
N1—H1N···O1i | 0.90 (2) | 2.42 (2) | 3.066 (2) | 130 (2) |
O1W—H1W···O1Aii | 0.87 (3) | 2.13 (4) | 2.960 (3) | 161 (3) |
N2—H2N···O1W | 0.96 (2) | 1.88 (2) | 2.817 (3) | 162 (2) |
O1W—H2W···O1Biii | 0.84 (3) | 2.08 (3) | 2.879 (3) | 160 (3) |
N3—H3N···N22 | 0.91 (3) | 2.31 (2) | 2.660 (3) | 103 (2) |
N3—H3N···N12iv | 0.91 (3) | 2.27 (3) | 3.043 (3) | 142 (2) |
C1G—H2G···O1A | 0.985 (19) | 2.46 (2) | 2.867 (3) | 104.5 (14) |
C9—H9···O1Wv | 0.96 (2) | 2.51 (2) | 3.424 (3) | 160.1 (17) |
C3—H3···O1vi | 0.98 (2) | 2.64 (2) | 3.459 (3) | 141 (2) |
Symmetry codes: (i) −x, −y−1, −z; (ii) −x−1/2, y−1/2, −z−1/2; (iii) −x−1/2, y+1/2, −z−1/2; (iv) −x, −y, −z; (v) −x−1, −y−1, −z; (vi) x, y+1, z. |
c1···c2 = c3···c4 = c6···c7 = c8···c9 | 6.34i |
c2···c3 = c5···c6 | 5.78i |
c4···c5 = c9···c10 = c2···c7 | 5.57ii |
c7···c8 = c10···c1 | 3.98iii |
Notes: (i) symmetry related by (x, y, z) and (-x, -y, -z); (ii) symmetry related by (x, y, z) and (-x, -y+1, -z); (iii) symmetry related by (x, y, z) and (-x+1, -y+1, -z). |