Download citation
Download citation
link to html
The ionic title complex, [YbI2(thf)5][YbI4(thf)2], was obtained by oxidation of the aryl­ytterbium(II) iodide DppYbI(thf)3 (Dpp = 2,6-Ph2C6H3) with neo­pentyl iodide. In the pentagonal-bipyramidal coordinated cation [Yb-I = 2.9366 (9) Å and Yb-O = 2.340 (6), 2.347 (8) and 2.365 (6) Å], a twofold rotation axis passes through the Yb atom, the O atom and the midpoint of the C-C bond of one of the thf ligands. The centrosymmetric anion shows an almost regular coordination octahedron [Yb-I = 2.9641 (8) and 2.9856 (9) Å, and Yb-O 2.279 (6) Å].

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536801011254/ya6041sup1.cif
Contains datablocks global, I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S1600536801011254/ya6041Isup2.hkl
Contains datablock I

CCDC reference: 170873

Key indicators

  • Single-crystal X-ray study
  • T = 173 K
  • Mean [sigma](C-C) = 0.015 Å
  • R factor = 0.047
  • wR factor = 0.126
  • Data-to-parameter ratio = 23.9

checkCIF results

No syntax errors found

ADDSYM reports no extra symmetry


Amber Alert Alert Level B:
PLAT_732 Alert B Angle Calc 90.28(2), Rep 90.28(16) .... 8.00 s.u-Ratio O11 -YB1 -I1 1.555 1.555 1.555
Yellow Alert Alert Level C:
ABSTM_02 Alert C The ratio of expected to reported Tmax/Tmin(RR) is > 1.10 Tmin and Tmax reported: 0.404 1.000 Tmin and Tmax expected: 0.117 0.356 RR = 1.232 Please check that your absorption correction is appropriate. General Notes
ABSTM_02 When printed, the submitted absorption T values will be replaced by the scaled T values. Since the ratio of scaled T's is identical to the ratio of reported T values, the scaling does not imply a change to the absorption corrections used in the study. Ratio of Tmax expected/reported 0.356 Tmax scaled 0.356 Tmin scaled 0.144
0 Alert Level A = Potentially serious problem
1 Alert Level B = Potential problem
1 Alert Level C = Please check

Comment top

In continuation of our work on σ-bonded rare earth organyls we have recently reported the synthesis and structural characterization of the m-terphenyl-substituted compound DppYbI(thf)3 (Dpp = 2,6-Ph2C6H3) (Heckmann & Niemeyer, 2000). The oxidation of this Grignard-analogous complex with neopentyl iodide did not produce the desired organylytterbium(III) diiodide (Niemeyer, 2000). Instead dichroic crystals of the title complex, (I), were isolated as orange/pale-yellow plates. Complex (I) is isomorphous with its samarium analogue [SmI2(thf)5][SmI4(thf)2] (Xie et al., 1996). In contrast, THF-solvated lanthanum(III) iodide crystallizes as the neutral coordination compound LaI3(thf)4 (Trifonov et al., 1997).

The crystal structure of (I) consists of well separated alternating layers of [YbI2(thf)5]+ cations and [YbI4(thf)2]- anions. In the seven-coordinate ytterbium cation a crystallographic twofold rotation axis passes through Yb1, O11, and the midpoint of the C13—C13i bond. The coordinated iodo ligands and THF molecules occupy respectively the axial and equatorial positions of a rather undistorted (O—Yb1—O 72±0.5°; O—Yb1—I 90±0.8°) pentagonal bipyramid. An almost regular coordination octahedron is observed for the centrosymmetric [YbI4(thf)2]- anion. The Yb1—I1 distance of 2.9366 (9) Å in the seven-coordinate cation is significantly shorter than the average Yb2—I bond of 2.9749 Å in the six-coordinate anion. This can be explained by a higher positive partial charge on the ytterbium center in the former (see Experimental). In contrast, the average Yb1—O distance of 2.351 Å is considerably longer than the Yb2—O41 bond length of 2.279 (6) Å. The latter is in the normal range for a trans-O(thf)—YbIII—O(thf) fragment on a six-coordinate metal center.

Experimental top

The title compound was synthesized by the reaction of DppYbI(thf)3 (1.33 g, 1.78 mmol) (Heckmann & Niemeyer, 2000) with neopentyl iodide (0.24 ml, 1.81 mmol) in 30 ml of THF solution. After cooling the solution to 263 K for 4 months, dichroic orange/pale-yellow crystals (0.35 g, 0.22 mmol, 14%) were obtained. A population analysis, based on the X-ray geometry (C—H distances set to 1.09 Å; 6–31G* basis sets for C, H, and O; quasi-relativistic pseudo-potentials of the Stuttgart/Bonn group for Yb and I), was calculated on the HF level of theory for the isolated cation and anion to give the following Mulliken charges: Yb1 + 2.014, Yb2 + 1.687.

Refinement top

The H atoms were positioned with idealized geometry (C—H = 0.99 Å), assigned a common refined isotropic displacement parameter and refined in a riding-model approximation. The three highest positive residual densities of 3.10, 2.72, and 2.21 e Å-3 were located near the heavy atoms Yb2, Yb1 and I3, respectively.

Computing details top

Data collection: P3 (Siemens, 1989); cell refinement: P3; data reduction: XDISK (Siemens 1989); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Sheldrick, 1998); software used to prepare material for publication: SHELXTL.

Figures top
[Figure 1] Fig. 1. Displacement ellipsoid plot (40% probability) of the cation and anion in the crystal of (I). H atoms have been omitted for clarity.
Trans-diodo-pentakis(tetrahydrofuran)ytterbium(III)-tetraiodo- trans-bis(tetrahydrofuran)ytterbium(III) top
Crystal data top
[YbI2(C4H8O)5][YbI4(C4H8O)2]F(000) = 2952
Mr = 1612.21Dx = 2.474 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 12.722 (2) ÅCell parameters from 20 reflections
b = 12.037 (3) Åθ = 8.5–12.0°
c = 28.551 (4) ŵ = 8.61 mm1
β = 98.05 (1)°T = 173 K
V = 4329.1 (13) Å3Plate, orange
Z = 40.32 × 0.22 × 0.12 mm
Data collection top
Rebuild Syntex P21/Siemens P3 four-circle
diffractometer
3643 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.050
Graphite monochromatorθmax = 27.0°, θmin = 2.3°
Wyckoff scansh = 016
Absorption correction: ψ scan
(North et al., 1968)
k = 015
Tmin = 0.404, Tmax = 1.000l = 3636
4945 measured reflections2 standard reflections every 198 reflections
4733 independent reflections intensity decay: none
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.126H-atom parameters constrained
S = 1.14 w = 1/[σ2(Fo2) + (0.0707P)2]
where P = (Fo2 + 2Fc2)/3
4733 reflections(Δ/σ)max = 0.001
198 parametersΔρmax = 3.10 e Å3
0 restraintsΔρmin = 3.10 e Å3
Crystal data top
[YbI2(C4H8O)5][YbI4(C4H8O)2]V = 4329.1 (13) Å3
Mr = 1612.21Z = 4
Monoclinic, C2/cMo Kα radiation
a = 12.722 (2) ŵ = 8.61 mm1
b = 12.037 (3) ÅT = 173 K
c = 28.551 (4) Å0.32 × 0.22 × 0.12 mm
β = 98.05 (1)°
Data collection top
Rebuild Syntex P21/Siemens P3 four-circle
diffractometer
3643 reflections with I > 2σ(I)
Absorption correction: ψ scan
(North et al., 1968)
Rint = 0.050
Tmin = 0.404, Tmax = 1.0002 standard reflections every 198 reflections
4945 measured reflections intensity decay: none
4733 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0470 restraints
wR(F2) = 0.126H-atom parameters constrained
S = 1.14Δρmax = 3.10 e Å3
4733 reflectionsΔρmin = 3.10 e Å3
198 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic)

treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Yb10.00000.00167 (4)0.25000.01565 (13)
Yb20.50000.00000.50000.01986 (14)
I10.20953 (4)0.00047 (5)0.21799 (2)0.02740 (16)
I20.46595 (5)0.22940 (5)0.46325 (2)0.03193 (17)
I30.41257 (5)0.09411 (6)0.40581 (2)0.03066 (17)
O110.00000.1966 (7)0.25000.0214 (18)
O210.0791 (5)0.0636 (6)0.3254 (2)0.0270 (14)
O310.0464 (5)0.1551 (5)0.2968 (2)0.0238 (13)
O410.6681 (5)0.0052 (5)0.4810 (3)0.0332 (17)
C120.0541 (7)0.2680 (7)0.2186 (3)0.0245 (19)
H12A0.13190.26760.22850.054 (7)*
H12B0.03900.24240.18540.054 (7)*
C130.0086 (8)0.3833 (7)0.2239 (3)0.028 (2)
H13A0.05920.44190.21750.054 (7)*
H13B0.05920.39370.20270.054 (7)*
C220.1748 (8)0.1306 (9)0.3344 (4)0.038 (2)
H22A0.23870.08330.33530.054 (7)*
H22B0.17590.18720.30930.054 (7)*
C230.1723 (10)0.1846 (12)0.3809 (4)0.055 (4)
H23A0.24470.20280.39650.054 (7)*
H23B0.12880.25320.37770.054 (7)*
C240.1209 (10)0.0946 (12)0.4079 (4)0.055 (4)
H24A0.08590.12760.43350.054 (7)*
H24B0.17440.03990.42190.054 (7)*
C250.0409 (9)0.0409 (10)0.3712 (4)0.040 (3)
H25A0.03050.07340.37170.054 (7)*
H25B0.03710.04010.37690.054 (7)*
C320.1544 (8)0.1825 (8)0.3176 (4)0.030 (2)
H32A0.19570.21040.29320.054 (7)*
H32B0.19070.11650.33290.054 (7)*
C330.1429 (9)0.2717 (9)0.3538 (4)0.039 (3)
H33A0.13120.23910.38450.054 (7)*
H33B0.20620.32040.35880.054 (7)*
C340.0471 (9)0.3335 (8)0.3312 (4)0.041 (3)
H34A0.06540.38540.30670.054 (7)*
H34B0.01370.37560.35500.054 (7)*
C350.0241 (8)0.2424 (8)0.3098 (4)0.032 (2)
H35A0.06890.21410.33290.054 (7)*
H35B0.07090.26970.28150.054 (7)*
C420.7123 (8)0.0858 (8)0.4573 (4)0.033 (2)
H42A0.75780.13330.48000.054 (7)*
H42B0.65560.13200.43970.054 (7)*
C430.7759 (10)0.0285 (10)0.4244 (4)0.046 (3)
H43A0.82980.07870.41400.054 (7)*
H43B0.73000.00090.39630.054 (7)*
C440.8273 (9)0.0647 (9)0.4553 (4)0.041 (3)
H44A0.84690.12740.43580.054 (7)*
H44B0.89160.03810.47580.054 (7)*
C450.7426 (7)0.0985 (8)0.4843 (4)0.034 (2)
H45A0.70650.16700.47140.054 (7)*
H45B0.77360.11200.51760.054 (7)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Yb10.0154 (2)0.0179 (3)0.0126 (2)0.0000.00183 (18)0.000
Yb20.0186 (2)0.0233 (3)0.0163 (3)0.0040 (2)0.00253 (19)0.0028 (2)
I10.0198 (3)0.0349 (3)0.0280 (3)0.0017 (2)0.0052 (2)0.0040 (3)
I20.0341 (3)0.0275 (3)0.0321 (3)0.0088 (3)0.0027 (3)0.0040 (3)
I30.0333 (3)0.0385 (4)0.0175 (3)0.0002 (3)0.0059 (2)0.0058 (3)
O110.019 (4)0.021 (4)0.026 (5)0.0000.010 (4)0.000
O210.032 (3)0.032 (4)0.014 (3)0.001 (3)0.006 (3)0.006 (3)
O310.023 (3)0.025 (3)0.021 (3)0.002 (3)0.005 (2)0.009 (3)
O410.030 (3)0.032 (4)0.042 (4)0.001 (3)0.017 (3)0.006 (3)
C120.024 (4)0.020 (4)0.028 (5)0.001 (3)0.001 (4)0.009 (4)
C130.030 (5)0.020 (5)0.034 (5)0.004 (4)0.001 (4)0.002 (4)
C220.030 (5)0.037 (6)0.040 (6)0.006 (4)0.016 (4)0.013 (5)
C230.039 (6)0.077 (9)0.044 (7)0.012 (6)0.012 (5)0.032 (7)
C240.056 (7)0.088 (11)0.017 (5)0.019 (7)0.004 (5)0.017 (6)
C250.050 (6)0.048 (6)0.022 (5)0.010 (5)0.007 (5)0.008 (5)
C320.032 (5)0.022 (4)0.031 (5)0.002 (4)0.008 (4)0.007 (4)
C330.046 (6)0.041 (6)0.028 (5)0.016 (5)0.004 (5)0.016 (5)
C340.057 (7)0.025 (5)0.042 (6)0.002 (5)0.013 (5)0.011 (5)
C350.031 (5)0.031 (5)0.034 (5)0.004 (4)0.007 (4)0.005 (4)
C420.024 (5)0.037 (6)0.038 (6)0.005 (4)0.008 (4)0.017 (5)
C430.056 (7)0.048 (7)0.035 (6)0.026 (6)0.018 (6)0.010 (5)
C440.038 (6)0.034 (6)0.055 (7)0.004 (5)0.019 (5)0.009 (5)
C450.025 (5)0.031 (5)0.046 (6)0.000 (4)0.005 (4)0.002 (5)
Geometric parameters (Å, º) top
Yb1—I12.9366 (9)C23—C241.53 (2)
Yb1—I1i2.9366 (9)C23—H23A0.9900
Yb1—O112.347 (8)C23—H23B0.9900
Yb1—O212.365 (6)C24—C251.501 (16)
Yb1—O21i2.365 (6)C24—H24A0.9900
Yb1—O312.340 (6)C24—H24B0.9900
Yb1—O31i2.340 (6)C25—H25A0.9900
Yb2—I22.9641 (8)C25—H25B0.9900
Yb2—I2ii2.9641 (8)C32—C331.511 (13)
Yb2—I32.9856 (9)C32—H32A0.9900
Yb2—I3ii2.9856 (9)C32—H32B0.9900
Yb2—O412.279 (6)C33—C341.495 (16)
Yb2—O41ii2.279 (6)C33—H33A0.9900
O11—C12i1.479 (9)C33—H33B0.9900
O11—C121.479 (9)C34—C351.497 (15)
O21—C221.453 (12)C34—H34A0.9900
O21—C251.485 (12)C34—H34B0.9900
O31—C321.456 (11)C35—H35A0.9900
O31—C351.463 (11)C35—H35B0.9900
O41—C421.443 (10)C42—C431.492 (14)
O41—C451.464 (11)C42—H42A0.9900
C12—C131.520 (12)C42—H42B0.9900
C12—H12A0.9900C43—C441.517 (18)
C12—H12B0.9900C43—H43A0.9900
C13—C13i1.534 (19)C43—H43B0.9900
C13—H13A0.9900C44—C451.503 (13)
C13—H13B0.9900C44—H44A0.9900
C22—C231.483 (15)C44—H44B0.9900
C22—H22A0.9900C45—H45A0.9900
C22—H22B0.9900C45—H45B0.9900
I1—Yb1—I1i179.44 (3)C22—C23—C24101.8 (10)
O11—Yb1—O2171.64 (16)C22—C23—H23A111.4
O21—Yb1—O3172.1 (2)C24—C23—H23A111.4
O31—Yb1—O31i72.5 (3)C22—C23—H23B111.4
O11—Yb1—O21i71.64 (16)C24—C23—H23B111.4
O31i—Yb1—O21i72.1 (2)H23A—C23—H23B109.3
O31—Yb1—O11143.74 (15)C25—C24—C23104.5 (9)
O31i—Yb1—O11143.74 (16)C25—C24—H24A110.9
O31—Yb1—O21i144.6 (2)C23—C24—H24A110.9
O31i—Yb1—O21144.6 (2)C25—C24—H24B110.9
O21i—Yb1—O21143.3 (3)C23—C24—H24B110.9
O11—Yb1—I190.28 (16)H24A—C24—H24B108.9
O21—Yb1—I189.73 (16)O21—C25—C24105.2 (9)
O31—Yb1—I190.37 (14)O21—C25—H25A110.7
O11—Yb1—I1i90.280 (16)C24—C25—H25A110.7
O21i—Yb1—I190.45 (16)O21—C25—H25B110.7
O31i—Yb1—I189.17 (14)C24—C25—H25B110.7
O31—Yb1—I1i89.17 (14)H25A—C25—H25B108.8
O31i—Yb1—I1i90.37 (14)O31—C32—C33105.3 (8)
O21i—Yb1—I1i89.73 (16)O31—C32—H32A110.7
O21—Yb1—I1i90.45 (16)C33—C32—H32A110.7
I2—Yb2—I390.98 (2)O31—C32—H32B110.7
I2—Yb2—I3ii89.02 (2)C33—C32—H32B110.7
I2—Yb2—I2ii180.0H32A—C32—H32B108.8
I3ii—Yb2—I3180.0C34—C33—C32102.0 (8)
I2ii—Yb2—I3ii90.98 (2)C34—C33—H33A111.4
I2ii—Yb2—I389.02 (2)C32—C33—H33A111.4
O41—Yb2—I289.19 (17)C34—C33—H33B111.4
O41—Yb2—I2ii90.81 (17)C32—C33—H33B111.4
O41—Yb2—I392.29 (19)H33A—C33—H33B109.2
O41—Yb2—I3ii87.71 (19)C33—C34—C35102.9 (8)
O41ii—Yb2—I290.81 (17)C33—C34—H34A111.2
O41ii—Yb2—I2ii89.19 (17)C35—C34—H34A111.2
O41ii—Yb2—I3ii92.29 (19)C33—C34—H34B111.2
O41ii—Yb2—I387.71 (19)C35—C34—H34B111.2
O41—Yb2—O41ii180.0H34A—C34—H34B109.1
C12i—O11—C12109.0 (9)O31—C35—C34105.8 (8)
C12i—O11—Yb1125.5 (4)O31—C35—H35A110.6
C12—O11—Yb1125.5 (4)C34—C35—H35A110.6
C22—O21—C25108.4 (8)O31—C35—H35B110.6
C22—O21—Yb1125.2 (6)C34—C35—H35B110.6
C25—O21—Yb1126.4 (6)H35A—C35—H35B108.7
C32—O31—C35108.1 (7)O41—C42—C43103.1 (8)
C32—O31—Yb1124.4 (5)O41—C42—H42A111.1
C35—O31—Yb1127.6 (5)C43—C42—H42A111.1
C42—O41—C45108.7 (7)O41—C42—H42B111.1
C42—O41—Yb2122.1 (5)C43—C42—H42B111.1
C45—O41—Yb2128.8 (5)H42A—C42—H42B109.1
O11—C12—C13104.7 (7)C42—C43—C44101.7 (9)
O11—C12—H12A110.8C42—C43—H43A111.4
C13—C12—H12A110.8C44—C43—H43A111.4
O11—C12—H12B110.8C42—C43—H43B111.4
C13—C12—H12B110.8C44—C43—H43B111.4
H12A—C12—H12B108.9H43A—C43—H43B109.3
C12—C13—C13i101.8 (6)C45—C44—C43103.7 (9)
C12—C13—H13A111.4C45—C44—H44A111.0
C13i—C13—H13A111.4C43—C44—H44A111.0
C12—C13—H13B111.4C45—C44—H44B111.0
C13i—C13—H13B111.4C43—C44—H44B111.0
H13A—C13—H13B109.3H44A—C44—H44B109.0
O21—C22—C23106.2 (9)O41—C45—C44105.4 (8)
O21—C22—H22A110.5O41—C45—H45A110.7
C23—C22—H22A110.5C44—C45—H45A110.7
O21—C22—H22B110.5O41—C45—H45B110.7
C23—C22—H22B110.5C44—C45—H45B110.7
H22A—C22—H22B108.7H45A—C45—H45B108.8
Symmetry codes: (i) x, y, z+1/2; (ii) x+1, y, z+1.

Experimental details

Crystal data
Chemical formula[YbI2(C4H8O)5][YbI4(C4H8O)2]
Mr1612.21
Crystal system, space groupMonoclinic, C2/c
Temperature (K)173
a, b, c (Å)12.722 (2), 12.037 (3), 28.551 (4)
β (°) 98.05 (1)
V3)4329.1 (13)
Z4
Radiation typeMo Kα
µ (mm1)8.61
Crystal size (mm)0.32 × 0.22 × 0.12
Data collection
DiffractometerRebuild Syntex P21/Siemens P3 four-circle
diffractometer
Absorption correctionψ scan
(North et al., 1968)
Tmin, Tmax0.404, 1.000
No. of measured, independent and
observed [I > 2σ(I)] reflections
4945, 4733, 3643
Rint0.050
(sin θ/λ)max1)0.639
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.047, 0.126, 1.14
No. of reflections4733
No. of parameters198
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å3)3.10, 3.10

Computer programs: P3 (Siemens, 1989), P3, XDISK (Siemens 1989), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), SHELXTL (Sheldrick, 1998), SHELXTL.

Selected geometric parameters (Å, º) top
Yb1—I12.9366 (9)Yb2—I22.9641 (8)
Yb1—O112.347 (8)Yb2—I32.9856 (9)
Yb1—O212.365 (6)Yb2—O412.279 (6)
Yb1—O312.340 (6)
I1—Yb1—I1i179.44 (3)O31—Yb1—I190.37 (14)
O11—Yb1—O2171.64 (16)O21i—Yb1—I190.45 (16)
O21—Yb1—O3172.1 (2)O31i—Yb1—I189.17 (14)
O31—Yb1—O31i72.5 (3)I2—Yb2—I390.98 (2)
O11—Yb1—I190.28 (16)O41—Yb2—I289.19 (17)
O21—Yb1—I189.73 (16)O41—Yb2—I392.29 (19)
Symmetry code: (i) x, y, z+1/2.
 

Follow Acta Cryst. E
Sign up for e-alerts
Follow Acta Cryst. on Twitter
Follow us on facebook
Sign up for RSS feeds