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In the crystal structure of the title compound, [Co(NCS)
2(H
2O)
4]·2C
5H
6N
2O
2, the six-coordinated Co
II complex lies on a special position of site symmetry 2/
m. The methylpyrazine dioxide lies on a mirror plane and links with the Co
II complex
via O—H
O hydrogen bonding.
Supporting information
CCDC reference: 264400
Key indicators
- Single-crystal X-ray study
- T = 298 K
- Mean (C-C) = 0.004 Å
- R factor = 0.032
- wR factor = 0.083
- Data-to-parameter ratio = 12.0
checkCIF/PLATON results
No syntax errors found
Alert level C
PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ?
PLAT380_ALERT_4_C Check Incorrectly? Oriented X(sp2)-Methyl Moiety C5
0 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
2 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
0 ALERT type 2 Indicator that the structure model may be wrong or deficient
0 ALERT type 3 Indicator that the structure quality may be low
1 ALERT type 4 Improvement, methodology, query or suggestion
Data collection: SMART (Bruker, 1997); cell refinement: SMART; data reduction: SAINT (Bruker, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 1990); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Sheldrick, 2001); software used to prepare material for publication: SHELXTL.
Tetraaquadithiocyanatocobalt(II) bis(2-methylpyrazine 1,4-dioxide)
top
Crystal data top
[Co(NCS)2(H2O)4]·2C5H6N2O2 | F(000) = 514 |
Mr = 499.39 | Dx = 1.536 Mg m−3 |
Monoclinic, C2/m | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2y | Cell parameters from 2566 reflections |
a = 16.982 (4) Å | θ = 2.6–28.1° |
b = 6.7616 (14) Å | µ = 1.04 mm−1 |
c = 10.120 (2) Å | T = 298 K |
β = 111.718 (4)° | Prism, pink |
V = 1079.5 (4) Å3 | 0.20 × 0.16 × 0.11 mm |
Z = 2 | |
Data collection top
Bruker SMART CCD area-detector diffractometer | 1095 independent reflections |
Radiation source: fine-focus sealed tube | 1045 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.048 |
φ and ω scans | θmax = 25.5°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −17→20 |
Tmin = 0.815, Tmax = 0.898 | k = −8→8 |
2873 measured reflections | l = −12→10 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.032 | H-atom parameters constrained |
wR(F2) = 0.083 | w = 1/[σ2(Fo2) + (0.0418P)2 + 0.4739P] where P = (Fo2 + 2Fc2)/3 |
S = 1.12 | (Δ/σ)max < 0.001 |
1095 reflections | Δρmax = 0.40 e Å−3 |
91 parameters | Δρmin = −0.38 e Å−3 |
3 restraints | Extinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.071 (4) |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Co1 | 0.5000 | 0.0000 | 1.0000 | 0.0314 (2) | |
O3 | 0.47093 (8) | 0.2257 (2) | 1.11867 (13) | 0.0399 (4) | |
H1 | 0.5132 | 0.2956 | 1.1718 | 0.050 (6)* | |
H2 | 0.4445 | 0.1845 | 1.1700 | 0.067 (8)* | |
S1 | 0.19490 (4) | 0.0000 | 0.74284 (8) | 0.0443 (3) | |
C6 | 0.29813 (16) | 0.0000 | 0.8185 (2) | 0.0324 (5) | |
O2 | 0.08640 (11) | 0.0000 | 0.2685 (2) | 0.0445 (5) | |
N3 | 0.16402 (12) | 0.0000 | 0.2675 (2) | 0.0332 (5) | |
C5 | 0.3876 (2) | 0.0000 | 0.5304 (3) | 0.0681 (12) | |
H7 | 0.4202 | 0.1143 | 0.5262 | 0.103 (11)* | |
H6 | 0.3753 | 0.0000 | 0.6110 | 0.077 (12)* | |
O1 | 0.40180 (11) | 0.0000 | 0.2740 (2) | 0.0439 (5) | |
N2 | 0.32485 (13) | 0.0000 | 0.2721 (2) | 0.0322 (5) | |
C4 | 0.25806 (17) | 0.0000 | 0.1483 (3) | 0.0390 (6) | |
H5 | 0.2673 | 0.0000 | 0.0633 | 0.047* | |
C2 | 0.31179 (16) | 0.0000 | 0.3966 (2) | 0.0363 (6) | |
N1 | 0.37080 (14) | 0.0000 | 0.8725 (2) | 0.0436 (6) | |
C1 | 0.23011 (15) | 0.0000 | 0.3913 (2) | 0.0365 (6) | |
H3 | 0.2203 | 0.0000 | 0.4759 | 0.044* | |
C3 | 0.17716 (17) | 0.0000 | 0.1449 (3) | 0.0394 (6) | |
H4 | 0.1315 | 0.0000 | 0.0584 | 0.047* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Co1 | 0.0319 (3) | 0.0368 (3) | 0.0289 (3) | 0.000 | 0.0150 (2) | 0.000 |
O3 | 0.0418 (7) | 0.0440 (8) | 0.0415 (7) | −0.0068 (6) | 0.0243 (6) | −0.0080 (6) |
S1 | 0.0357 (4) | 0.0442 (4) | 0.0479 (4) | 0.000 | 0.0095 (3) | 0.000 |
C6 | 0.0387 (9) | 0.0328 (12) | 0.0279 (11) | 0.000 | 0.0148 (9) | 0.000 |
O2 | 0.0286 (9) | 0.0500 (12) | 0.0562 (11) | 0.000 | 0.0171 (8) | 0.000 |
N3 | 0.0295 (10) | 0.0324 (11) | 0.0377 (11) | 0.000 | 0.0123 (8) | 0.000 |
C5 | 0.0374 (15) | 0.133 (4) | 0.0314 (14) | 0.000 | 0.0102 (12) | 0.000 |
O1 | 0.0376 (9) | 0.0563 (12) | 0.0477 (10) | 0.000 | 0.0274 (8) | 0.000 |
N2 | 0.0354 (10) | 0.0330 (11) | 0.0319 (10) | 0.000 | 0.0169 (8) | 0.000 |
C4 | 0.0479 (14) | 0.0467 (14) | 0.0248 (11) | 0.000 | 0.0163 (10) | 0.000 |
C2 | 0.0350 (12) | 0.0489 (15) | 0.0265 (11) | 0.000 | 0.0131 (10) | 0.000 |
N1 | 0.0374 (9) | 0.0541 (14) | 0.0375 (12) | 0.000 | 0.0117 (8) | 0.000 |
C1 | 0.0368 (13) | 0.0479 (15) | 0.0277 (11) | 0.000 | 0.0152 (10) | 0.000 |
C3 | 0.0411 (13) | 0.0444 (15) | 0.0277 (11) | 0.000 | 0.0069 (10) | 0.000 |
Geometric parameters (Å, º) top
Co1—N1 | 2.094 (2) | N3—C3 | 1.339 (3) |
Co1—N1i | 2.094 (2) | C5—C2 | 1.483 (4) |
Co1—O3ii | 2.1102 (12) | C5—H7 | 0.9614 |
Co1—O3 | 2.1102 (12) | C5—H6 | 0.9135 |
Co1—O3i | 2.1102 (12) | O1—N2 | 1.300 (3) |
Co1—O3iii | 2.1102 (12) | N2—C4 | 1.343 (3) |
O3—H1 | 0.8622 | N2—C2 | 1.358 (3) |
O3—H2 | 0.8497 | C4—C3 | 1.362 (4) |
S1—C6 | 1.633 (3) | C4—H5 | 0.9300 |
C6—N1 | 1.150 (3) | C2—C1 | 1.368 (3) |
O2—N3 | 1.322 (2) | C1—H3 | 0.9300 |
N3—C1 | 1.338 (3) | C3—H4 | 0.9300 |
| | | |
N1—Co1—N1i | 180.000 (1) | C1—N3—C3 | 119.9 (2) |
N1—Co1—O3ii | 86.46 (6) | C2—C5—H7 | 106.2 |
N1i—Co1—O3ii | 93.54 (6) | C2—C5—H6 | 114.0 |
N1—Co1—O3 | 86.46 (6) | H7—C5—H6 | 111.5 |
N1i—Co1—O3 | 93.54 (6) | O1—N2—C4 | 120.7 (2) |
O3ii—Co1—O3 | 92.61 (7) | O1—N2—C2 | 119.67 (19) |
N1—Co1—O3i | 93.54 (6) | C4—N2—C2 | 119.6 (2) |
N1i—Co1—O3i | 86.46 (6) | N2—C4—C3 | 121.3 (2) |
O3ii—Co1—O3i | 87.39 (7) | N2—C4—H5 | 119.3 |
O3—Co1—O3i | 180.0 | C3—C4—H5 | 119.3 |
N1—Co1—O3iii | 93.54 (6) | N2—C2—C1 | 118.4 (2) |
N1i—Co1—O3iii | 86.46 (6) | N2—C2—C5 | 117.6 (2) |
O3ii—Co1—O3iii | 180.0 | C1—C2—C5 | 124.1 (2) |
O3—Co1—O3iii | 87.39 (7) | C6—N1—Co1 | 171.3 (2) |
O3i—Co1—O3iii | 92.61 (7) | N3—C1—C2 | 121.6 (2) |
Co1—O3—H1 | 115.8 | N3—C1—H3 | 119.2 |
Co1—O3—H2 | 113.5 | C2—C1—H3 | 119.2 |
H1—O3—H2 | 107.8 | N3—C3—C4 | 119.3 (2) |
N1—C6—S1 | 179.7 (2) | N3—C3—H4 | 120.4 |
O2—N3—C1 | 119.1 (2) | C4—C3—H4 | 120.4 |
O2—N3—C3 | 121.0 (2) | | |
Symmetry codes: (i) −x+1, −y, −z+2; (ii) x, −y, z; (iii) −x+1, y, −z+2. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H2···O1iv | 0.85 | 1.94 | 2.746 (2) | 159 |
O3—H1···O2v | 0.86 | 1.87 | 2.7175 (19) | 166 |
Symmetry codes: (iv) x, y, z+1; (v) x+1/2, y+1/2, z+1. |
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