Download citation
Download citation
link to html
A convenient one-pot synthesis of 4-aryl-2-methyl-N-phenacyl­imidazoles (4) through a microwave-assisted pseudo-tricomponent reaction of α-bromo­aceto­phenones (1) with acetamidine hydro­chloride (2) is reported. Ketones (4) were successfully used as substrates for the preparation of the respective N-(2-hy­droxy­ethyl)­imidazoles (5) with yields up to 87%. The synthesized compounds were characterized by NMR and high-resolution mass spectrometry analyses, and several structures were confirmed and studied by single-crystal X-ray diffraction. The analysis of the whole-of-molecule inter­actions shows that, despite the difference in the atom–atom contacts forming the crystals, dispersion energies make the largest contribution to the formation of the solids, giving an isotropic tendency in the topology of the energy framework diagrams for pairs of molecules. In addition, the in vitro anti­fungal activity of both families of compounds [ketones (4) and alcohols (5)] against Candida albicans and Cryptococcus neoformans was evaluated, where the 2,4-di­chloro­phenyl-substituted alcohol (5f), an isomer of the drug miconazole, showed the highest activity (IC50 = 7.8 µg ml−1 against C. neoformans).

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S2052520619013271/xk5059sup1.cif
Contains datablocks 4b, 4d, 4f

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2052520619013271/xk50594bsup2.hkl
Contains datablock 4b

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2052520619013271/xk50594dsup3.hkl
Contains datablock 4d

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S2052520619013271/xk50594fsup4.hkl
Contains datablock 4f

pdf

Portable Document Format (PDF) file https://doi.org/10.1107/S2052520619013271/xk5059sup5.pdf
Supporting information

CCDC references: 1817750; 1817752; 1899534

Computing details top

For all structures, data collection: CrysAlis PRO, Agilent Technologies, Version 1.171.37.35 (release 13-08-2014 CrysAlis171 .NET) (compiled Aug 13 2014,18:06:01); cell refinement: CrysAlis PRO, Agilent Technologies, Version 1.171.37.35 (release 13-08-2014 CrysAlis171 .NET) (compiled Aug 13 2014,18:06:01); data reduction: CrysAlis PRO, Agilent Technologies, Version 1.171.37.35 (release 13-08-2014 CrysAlis171 .NET) (compiled Aug 13 2014,18:06:01); program(s) used to solve structure: Superflip (Palatinus & Chapuis, 2007); program(s) used to refine structure: SHELXL2016/6 (Sheldrick, 2015a); molecular graphics: Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL2014 (Sheldrick, 2015b).

(4b) top
Crystal data top
C18H14Cl2N2OF(000) = 712
Mr = 345.21Dx = 1.358 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 11.351 (3) ÅCell parameters from 1699 reflections
b = 16.259 (6) Åθ = 3.1–22.3°
c = 9.589 (3) ŵ = 0.39 mm1
β = 107.41 (3)°T = 298 K
V = 1688.5 (10) Å3Parallelepiped, brown
Z = 40.13 × 0.09 × 0.08 mm
Data collection top
'Agilent SuperNova Dual Source
diffractometer with an Atlas detector'
3441 independent reflections
Radiation source: SuperNova (Mo) X-ray Source1468 reflections with I > 2σ(I)
Detector resolution: 5.3072 pixels mm-1Rint = 0.113
ω scansθmax = 26.4°, θmin = 3.1°
Absorption correction: multi-scan
(CrysAlis PRO; Agilent, 2014)
h = 1414
Tmin = 0.198, Tmax = 1.000k = 2020
17514 measured reflectionsl = 1111
Refinement top
Refinement on F2Primary atom site location: iterative
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.076Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.232H-atom parameters constrained
S = 1.06 w = 1/[σ2(Fo2) + (0.0869P)2]
where P = (Fo2 + 2Fc2)/3
3441 reflections(Δ/σ)max < 0.001
209 parametersΔρmax = 0.21 e Å3
30 restraintsΔρmin = 0.30 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Cl10.19897 (11)0.85133 (10)0.06229 (14)0.1040 (6)
C20.3192 (4)0.8392 (3)0.2237 (5)0.0721 (8)
C30.3958 (4)0.9048 (3)0.2826 (4)0.0726 (9)
H30.3843420.9556210.2358280.087*
C40.4887 (3)0.8940 (3)0.4107 (4)0.0666 (12)
H40.5406470.9379930.4490290.080*
C50.5081 (3)0.8199 (3)0.4851 (4)0.0574 (10)
C60.6069 (4)0.8103 (3)0.6244 (4)0.0630 (11)
N70.6767 (3)0.8763 (2)0.6909 (4)0.0701 (10)
C80.7553 (4)0.8469 (3)0.8115 (5)0.0717 (13)
N90.7392 (3)0.7652 (3)0.8251 (4)0.0695 (10)
C100.6450 (4)0.7419 (3)0.7042 (4)0.0689 (12)
H100.6135780.6891190.6818820.083*
C110.8175 (3)0.7098 (3)0.9323 (4)0.0729 (13)
H11A0.7704130.6612280.9407920.088*
H11B0.8429560.7367591.0268000.088*
C120.9297 (4)0.6842 (3)0.8918 (5)0.0704 (13)
O130.9438 (3)0.7056 (3)0.7760 (3)0.1016 (12)
C141.0220 (3)0.6312 (3)0.9949 (4)0.0603 (11)
C151.1332 (4)0.6163 (3)0.9693 (5)0.0839 (14)
H151.1469700.6370530.8852170.101*
C161.2236 (4)0.5714 (3)1.0656 (5)0.0816 (9)
H161.2973510.5608581.0452810.098*
C171.2063 (4)0.5420 (3)1.1909 (5)0.0808 (9)
Cl181.32474 (13)0.49072 (11)1.31794 (17)0.1244 (7)
C191.0959 (4)0.5539 (3)1.2181 (5)0.0799 (9)
H191.0823880.5316371.3013240.096*
C201.0046 (4)0.5994 (3)1.1210 (4)0.0706 (12)
H200.9302810.6086541.1407230.085*
C210.8507 (4)0.8960 (3)0.9219 (5)0.0978 (17)
H21A0.9313850.8753890.9281940.147*
H21B0.8369010.8913081.0156110.147*
H21C0.8449530.9526780.8926890.147*
C220.4292 (4)0.7546 (3)0.4208 (5)0.0749 (13)
H220.4406470.7036910.4671420.090*
C230.3360 (4)0.7635 (3)0.2920 (5)0.0737 (9)
H230.2851940.7193190.2514460.088*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Cl10.0818 (9)0.1314 (14)0.0828 (9)0.0142 (8)0.0002 (7)0.0107 (8)
C20.0619 (15)0.089 (2)0.0624 (18)0.0056 (14)0.0145 (14)0.0029 (13)
C30.0634 (16)0.089 (2)0.0632 (19)0.0060 (15)0.0151 (15)0.0042 (14)
C40.066 (3)0.063 (3)0.074 (3)0.007 (2)0.025 (2)0.003 (2)
C50.055 (2)0.063 (3)0.058 (2)0.001 (2)0.0225 (19)0.001 (2)
C60.057 (2)0.082 (3)0.056 (3)0.004 (2)0.024 (2)0.008 (2)
N70.064 (2)0.080 (3)0.063 (2)0.0040 (19)0.0133 (19)0.0072 (19)
C80.060 (3)0.090 (4)0.066 (3)0.002 (3)0.021 (2)0.016 (3)
N90.064 (2)0.088 (3)0.057 (2)0.000 (2)0.0192 (18)0.0033 (19)
C100.065 (2)0.082 (4)0.058 (3)0.002 (2)0.017 (2)0.007 (2)
C110.064 (3)0.097 (4)0.055 (3)0.006 (2)0.014 (2)0.008 (2)
C120.065 (3)0.094 (4)0.056 (3)0.002 (2)0.025 (2)0.005 (2)
O130.096 (2)0.157 (4)0.063 (2)0.026 (2)0.0405 (17)0.028 (2)
C140.058 (2)0.070 (3)0.056 (2)0.004 (2)0.022 (2)0.007 (2)
C150.077 (3)0.097 (4)0.090 (3)0.001 (3)0.042 (3)0.017 (3)
C160.0806 (18)0.084 (2)0.086 (2)0.0083 (17)0.0339 (16)0.0014 (17)
C170.0811 (17)0.083 (2)0.0835 (19)0.0088 (17)0.0322 (16)0.0008 (16)
Cl180.1140 (11)0.1207 (14)0.1395 (14)0.0560 (10)0.0397 (10)0.0339 (10)
C190.0817 (18)0.082 (2)0.081 (2)0.0082 (17)0.0325 (16)0.0012 (16)
C200.063 (2)0.092 (4)0.061 (3)0.007 (2)0.025 (2)0.001 (2)
C210.092 (3)0.118 (5)0.075 (3)0.002 (3)0.012 (3)0.022 (3)
C220.077 (3)0.076 (3)0.071 (3)0.003 (2)0.021 (2)0.009 (2)
C230.0630 (16)0.090 (2)0.0636 (19)0.0030 (15)0.0124 (15)0.0033 (14)
Geometric parameters (Å, º) top
Cl1—C21.741 (4)C12—O131.219 (5)
C2—C231.381 (6)C12—C141.483 (6)
C2—C31.385 (6)C14—C151.377 (5)
C3—C41.370 (5)C14—C201.383 (5)
C3—H30.9300C15—C161.369 (6)
C4—C51.384 (6)C15—H150.9300
C4—H40.9300C16—C171.361 (6)
C5—C221.406 (6)C16—H160.9300
C5—C61.473 (5)C17—C191.368 (6)
C6—C101.346 (6)C17—Cl181.733 (5)
C6—N71.372 (5)C19—C201.382 (5)
N7—C81.321 (5)C19—H190.9300
C8—N91.353 (6)C20—H200.9300
C8—C211.497 (6)C21—H21A0.9600
N9—C101.374 (5)C21—H21B0.9600
N9—C111.454 (5)C21—H21C0.9600
C10—H100.9300C22—C231.373 (5)
C11—C121.497 (5)C22—H220.9300
C11—H11A0.9700C23—H230.9300
C11—H11B0.9700
C23—C2—C3120.8 (4)O13—C12—C11120.7 (4)
C23—C2—Cl1118.8 (4)C14—C12—C11118.4 (4)
C3—C2—Cl1120.3 (4)C15—C14—C20117.9 (4)
C4—C3—C2119.2 (4)C15—C14—C12119.1 (4)
C4—C3—H3120.4C20—C14—C12122.9 (4)
C2—C3—H3120.4C16—C15—C14121.1 (4)
C3—C4—C5122.4 (4)C16—C15—H15119.4
C3—C4—H4118.8C14—C15—H15119.4
C5—C4—H4118.8C17—C16—C15120.4 (4)
C4—C5—C22116.7 (4)C17—C16—H16119.8
C4—C5—C6121.3 (4)C15—C16—H16119.8
C22—C5—C6122.0 (4)C16—C17—C19120.0 (4)
C10—C6—N7109.8 (4)C16—C17—Cl18120.2 (4)
C10—C6—C5129.1 (4)C19—C17—Cl18119.8 (4)
N7—C6—C5121.1 (4)C17—C19—C20119.5 (4)
C8—N7—C6105.6 (4)C17—C19—H19120.2
N7—C8—N9111.3 (4)C20—C19—H19120.2
N7—C8—C21125.7 (5)C19—C20—C14120.9 (4)
N9—C8—C21123.0 (4)C19—C20—H20119.5
C8—N9—C10106.5 (3)C14—C20—H20119.5
C8—N9—C11127.3 (4)C8—C21—H21A109.5
C10—N9—C11125.6 (4)C8—C21—H21B109.5
C6—C10—N9106.8 (4)H21A—C21—H21B109.5
C6—C10—H10126.6C8—C21—H21C109.5
N9—C10—H10126.6H21A—C21—H21C109.5
N9—C11—C12112.1 (3)H21B—C21—H21C109.5
N9—C11—H11A109.2C23—C22—C5122.2 (4)
C12—C11—H11A109.2C23—C22—H22118.9
N9—C11—H11B109.2C5—C22—H22118.9
C12—C11—H11B109.2C22—C23—C2118.7 (4)
H11A—C11—H11B107.9C22—C23—H23120.7
O13—C12—C14120.9 (4)C2—C23—H23120.7
C23—C2—C3—C40.4 (7)C10—N9—C11—C1289.5 (5)
Cl1—C2—C3—C4179.1 (3)N9—C11—C12—O134.3 (6)
C2—C3—C4—C50.9 (6)N9—C11—C12—C14176.7 (4)
C3—C4—C5—C221.6 (6)O13—C12—C14—C159.7 (7)
C3—C4—C5—C6178.6 (3)C11—C12—C14—C15171.3 (4)
C4—C5—C6—C10173.9 (4)O13—C12—C14—C20173.9 (4)
C22—C5—C6—C105.9 (7)C11—C12—C14—C205.1 (6)
C4—C5—C6—N75.2 (6)C20—C14—C15—C160.0 (7)
C22—C5—C6—N7175.0 (4)C12—C14—C15—C16176.5 (4)
C10—C6—N7—C80.8 (5)C14—C15—C16—C171.5 (8)
C5—C6—N7—C8179.9 (3)C15—C16—C17—C193.1 (8)
C6—N7—C8—N90.2 (5)C15—C16—C17—Cl18175.9 (4)
C6—N7—C8—C21179.6 (4)C16—C17—C19—C203.1 (7)
N7—C8—N9—C100.5 (5)Cl18—C17—C19—C20175.9 (4)
C21—C8—N9—C10179.7 (4)C17—C19—C20—C141.6 (7)
N7—C8—N9—C11171.5 (4)C15—C14—C20—C190.0 (7)
C21—C8—N9—C118.8 (7)C12—C14—C20—C19176.4 (4)
N7—C6—C10—N91.1 (5)C4—C5—C22—C231.1 (6)
C5—C6—C10—N9179.7 (4)C6—C5—C22—C23179.1 (4)
C8—N9—C10—C61.0 (5)C5—C22—C23—C20.2 (6)
C11—N9—C10—C6172.2 (4)C3—C2—C23—C220.9 (7)
C8—N9—C11—C1279.8 (5)Cl1—C2—C23—C22178.6 (3)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C4—H4···N70.932.572.903 (5)101
C11—H11B···O13i0.972.503.462 (5)170
Symmetry code: (i) x, y+3/2, z+1/2.
(4d) top
Crystal data top
C18H14F2N2ODx = 1.354 Mg m3
Mr = 312.31Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, PbcaCell parameters from 2571 reflections
a = 11.984 (3) Åθ = 3.5–21.1°
b = 9.537 (2) ŵ = 0.10 mm1
c = 26.808 (7) ÅT = 298 K
V = 3064.1 (12) Å3Parallelepiped, brown
Z = 80.15 × 0.12 × 0.07 mm
F(000) = 1296
Data collection top
'Agilent SuperNova Dual Source
diffractometer with an Atlas detector'
3121 independent reflections
Radiation source: SuperNova (Mo) X-ray Source1625 reflections with I > 2σ(I)
Detector resolution: 5.3072 pixels mm-1Rint = 0.119
ω scansθmax = 26.4°, θmin = 3.1°
Absorption correction: multi-scan
(CrysAlis PRO; Agilent, 2014)
h = 1414
Tmin = 0.239, Tmax = 1.000k = 1111
30609 measured reflectionsl = 3333
Refinement top
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.062H-atom parameters constrained
wR(F2) = 0.183 w = 1/[σ2(Fo2) + (0.0739P)2 + 0.5522P]
where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
3121 reflectionsΔρmax = 0.21 e Å3
210 parametersΔρmin = 0.17 e Å3
0 restraintsExtinction correction: SHELXL-2016/6 (Sheldrick 2016), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: iterativeExtinction coefficient: 0.0024 (6)
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
F10.21766 (15)0.05087 (17)0.22087 (7)0.0806 (6)
C20.3028 (2)0.0971 (3)0.25005 (11)0.0564 (8)
C30.3440 (3)0.2281 (3)0.24106 (12)0.0649 (9)
H30.3158580.2832260.2153380.078*
C40.4286 (2)0.2759 (3)0.27141 (12)0.0615 (8)
H40.4583390.3646770.2660090.074*
C50.4701 (2)0.1938 (3)0.30992 (11)0.0488 (7)
C60.4263 (2)0.0617 (3)0.31681 (11)0.0570 (8)
H60.4544930.0048110.3419920.068*
C70.3412 (2)0.0126 (3)0.28696 (12)0.0629 (8)
H70.3109430.0760230.2919830.075*
C80.5600 (2)0.2529 (3)0.34171 (10)0.0530 (7)
O90.59992 (18)0.3672 (2)0.33351 (8)0.0777 (7)
C100.5996 (2)0.1670 (3)0.38575 (12)0.0602 (8)
H10A0.5410770.1635310.4107180.072*
H10B0.6145060.0718250.3748940.072*
N110.69948 (19)0.2254 (2)0.40773 (9)0.0539 (6)
C120.7081 (2)0.3340 (3)0.44012 (11)0.0539 (7)
N130.81298 (18)0.3691 (2)0.44761 (9)0.0547 (6)
C140.8742 (2)0.2784 (3)0.41801 (10)0.0496 (7)
C150.8055 (2)0.1905 (3)0.39307 (11)0.0543 (8)
H150.8259150.1208240.3706000.065*
C160.9971 (2)0.2855 (3)0.41665 (10)0.0500 (7)
C171.0536 (2)0.3817 (3)0.44604 (12)0.0608 (8)
H171.0126940.4415420.4664290.073*
C181.1684 (3)0.3916 (3)0.44605 (13)0.0727 (9)
H181.2051660.4568570.4659030.087*
C191.2250 (3)0.3033 (4)0.41622 (15)0.0799 (10)
F201.33875 (17)0.3109 (3)0.41585 (10)0.1248 (9)
C211.1749 (3)0.2075 (4)0.38626 (14)0.0795 (10)
H211.2171640.1488520.3659670.095*
C221.0602 (3)0.1989 (3)0.38653 (13)0.0682 (9)
H221.0247380.1338090.3661360.082*
C230.6096 (2)0.4013 (4)0.46405 (13)0.0714 (9)
H23A0.5577120.4302250.4387820.107*
H23B0.6335100.4816750.4827870.107*
H23C0.5741340.3354900.4860020.107*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
F10.0738 (12)0.0764 (12)0.0916 (14)0.0072 (9)0.0347 (10)0.0005 (10)
C20.0488 (17)0.0571 (18)0.063 (2)0.0012 (14)0.0108 (15)0.0059 (14)
C30.069 (2)0.0581 (19)0.068 (2)0.0045 (16)0.0176 (17)0.0079 (15)
C40.065 (2)0.0511 (17)0.068 (2)0.0024 (14)0.0069 (16)0.0062 (14)
C50.0439 (16)0.0483 (16)0.0540 (18)0.0016 (12)0.0022 (13)0.0007 (12)
C60.0537 (18)0.0575 (18)0.0597 (19)0.0000 (14)0.0085 (14)0.0097 (14)
C70.061 (2)0.0579 (18)0.070 (2)0.0083 (15)0.0087 (16)0.0013 (16)
C80.0482 (17)0.0531 (17)0.0577 (19)0.0011 (14)0.0009 (14)0.0047 (13)
O90.0844 (16)0.0658 (14)0.0830 (17)0.0252 (11)0.0232 (12)0.0217 (11)
C100.0470 (18)0.0646 (18)0.069 (2)0.0107 (13)0.0100 (15)0.0113 (15)
N110.0446 (15)0.0570 (14)0.0602 (16)0.0025 (11)0.0079 (12)0.0077 (12)
C120.0455 (19)0.0596 (17)0.0565 (19)0.0020 (13)0.0005 (14)0.0069 (14)
N130.0452 (15)0.0621 (15)0.0568 (16)0.0006 (11)0.0001 (11)0.0039 (11)
C140.0450 (17)0.0541 (16)0.0498 (18)0.0008 (13)0.0034 (13)0.0045 (13)
C150.0509 (19)0.0556 (17)0.0564 (19)0.0045 (13)0.0082 (14)0.0003 (13)
C160.0483 (18)0.0553 (16)0.0465 (17)0.0017 (13)0.0030 (13)0.0053 (13)
C170.0513 (19)0.0695 (19)0.062 (2)0.0031 (14)0.0041 (15)0.0090 (15)
C180.050 (2)0.087 (2)0.081 (2)0.0101 (17)0.0098 (17)0.0092 (18)
C190.0345 (19)0.102 (3)0.103 (3)0.0001 (17)0.0021 (18)0.000 (2)
F200.0431 (13)0.169 (2)0.162 (2)0.0026 (13)0.0057 (13)0.0263 (17)
C210.052 (2)0.091 (2)0.095 (3)0.0064 (17)0.0092 (19)0.016 (2)
C220.056 (2)0.073 (2)0.076 (2)0.0007 (15)0.0033 (17)0.0132 (16)
C230.0486 (19)0.093 (2)0.072 (2)0.0007 (16)0.0096 (16)0.0039 (17)
Geometric parameters (Å, º) top
F1—C21.359 (3)C12—C231.488 (4)
C2—C71.356 (4)N13—C141.385 (3)
C2—C31.365 (4)C14—C151.352 (4)
C3—C41.378 (4)C14—C161.474 (4)
C3—H30.9300C15—H150.9300
C4—C51.388 (4)C16—C221.380 (4)
C4—H40.9300C16—C171.386 (4)
C5—C61.377 (4)C17—C181.379 (4)
C5—C81.484 (4)C17—H170.9300
C6—C71.378 (4)C18—C191.345 (4)
C6—H60.9300C18—H180.9300
C7—H70.9300C19—C211.357 (5)
C8—O91.211 (3)C19—F201.365 (4)
C8—C101.513 (4)C21—C221.377 (4)
C10—N111.446 (3)C21—H210.9300
C10—H10A0.9700C22—H220.9300
C10—H10B0.9700C23—H23A0.9600
N11—C121.356 (4)C23—H23B0.9600
N11—C151.371 (3)C23—H23C0.9600
C12—N131.317 (3)
C7—C2—F1118.8 (3)N11—C12—C23123.1 (3)
C7—C2—C3123.4 (3)C12—N13—C14105.1 (2)
F1—C2—C3117.8 (3)C15—C14—N13110.3 (2)
C2—C3—C4117.7 (3)C15—C14—C16128.7 (3)
C2—C3—H3121.2N13—C14—C16121.0 (2)
C4—C3—H3121.2C14—C15—N11105.8 (2)
C3—C4—C5121.1 (3)C14—C15—H15127.1
C3—C4—H4119.4N11—C15—H15127.1
C5—C4—H4119.4C22—C16—C17117.4 (3)
C6—C5—C4118.6 (3)C22—C16—C14122.3 (3)
C6—C5—C8123.1 (2)C17—C16—C14120.3 (3)
C4—C5—C8118.3 (2)C18—C17—C16122.2 (3)
C5—C6—C7121.0 (3)C18—C17—H17118.9
C5—C6—H6119.5C16—C17—H17118.9
C7—C6—H6119.5C19—C18—C17117.4 (3)
C2—C7—C6118.2 (3)C19—C18—H18121.3
C2—C7—H7120.9C17—C18—H18121.3
C6—C7—H7120.9C18—C19—C21123.4 (3)
O9—C8—C5121.6 (2)C18—C19—F20118.4 (3)
O9—C8—C10120.3 (3)C21—C19—F20118.2 (3)
C5—C8—C10118.1 (2)C19—C21—C22118.6 (3)
N11—C10—C8111.7 (2)C19—C21—H21120.7
N11—C10—H10A109.3C22—C21—H21120.7
C8—C10—H10A109.3C21—C22—C16121.0 (3)
N11—C10—H10B109.3C21—C22—H22119.5
C8—C10—H10B109.3C16—C22—H22119.5
H10A—C10—H10B107.9C12—C23—H23A109.5
C12—N11—C15107.4 (2)C12—C23—H23B109.5
C12—N11—C10128.2 (2)H23A—C23—H23B109.5
C15—N11—C10123.8 (3)C12—C23—H23C109.5
N13—C12—N11111.4 (2)H23A—C23—H23C109.5
N13—C12—C23125.6 (3)H23B—C23—H23C109.5
C7—C2—C3—C40.2 (5)N11—C12—N13—C140.5 (3)
F1—C2—C3—C4178.6 (3)C23—C12—N13—C14179.7 (3)
C2—C3—C4—C50.3 (5)C12—N13—C14—C150.2 (3)
C3—C4—C5—C61.1 (4)C12—N13—C14—C16179.8 (2)
C3—C4—C5—C8179.0 (3)N13—C14—C15—N110.8 (3)
C4—C5—C6—C71.4 (4)C16—C14—C15—N11179.2 (3)
C8—C5—C6—C7178.6 (3)C12—N11—C15—C141.0 (3)
F1—C2—C7—C6178.9 (3)C10—N11—C15—C14172.9 (2)
C3—C2—C7—C60.1 (5)C15—C14—C16—C221.8 (4)
C5—C6—C7—C21.0 (4)N13—C14—C16—C22178.3 (3)
C6—C5—C8—O9177.0 (3)C15—C14—C16—C17178.5 (3)
C4—C5—C8—O92.9 (4)N13—C14—C16—C171.5 (4)
C6—C5—C8—C104.1 (4)C22—C16—C17—C180.5 (4)
C4—C5—C8—C10176.0 (3)C14—C16—C17—C18179.8 (3)
O9—C8—C10—N1111.3 (4)C16—C17—C18—C190.2 (5)
C5—C8—C10—N11169.8 (2)C17—C18—C19—C210.7 (6)
C8—C10—N11—C1280.7 (4)C17—C18—C19—F20179.7 (3)
C8—C10—N11—C1589.5 (3)C18—C19—C21—C220.6 (6)
C15—N11—C12—N131.0 (3)F20—C19—C21—C22179.8 (3)
C10—N11—C12—N13172.4 (2)C19—C21—C22—C160.1 (5)
C15—N11—C12—C23179.8 (3)C17—C16—C22—C210.6 (5)
C10—N11—C12—C238.4 (4)C14—C16—C22—C21179.7 (3)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C17—H17···N130.932.542.886 (3)101
(4f) top
Crystal data top
C18H12Cl4N2OZ = 2
Mr = 414.10F(000) = 420
Triclinic, P1Dx = 1.561 Mg m3
a = 4.4932 (5) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.9707 (11) ÅCell parameters from 5042 reflections
c = 18.786 (2) Åθ = 3.2–27.5°
α = 76.483 (9)°µ = 0.68 mm1
β = 83.305 (9)°T = 298 K
γ = 78.976 (9)°Parallelepiped, colorless
V = 881.25 (17) Å30.31 × 0.25 × 0.19 mm
Data collection top
'Agilent SuperNova Dual Source
diffractometer with an Atlas detector'
3884 independent reflections
Radiation source: SuperNova (Mo) X-ray Source2874 reflections with I > 2σ(I)
Detector resolution: 5.3072 pixels mm-1Rint = 0.054
ω scansθmax = 27.1°, θmin = 3.3°
Absorption correction: multi-scan
(CrysAlis PRO; Agilent, 2014)
h = 55
Tmin = 0.675, Tmax = 1.000k = 1314
18954 measured reflectionsl = 2424
Refinement top
Refinement on F2Primary atom site location: iterative
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.142H-atom parameters constrained
S = 1.04 w = 1/[σ2(Fo2) + (0.053P)2 + 0.7031P]
where P = (Fo2 + 2Fc2)/3
3884 reflections(Δ/σ)max < 0.001
227 parametersΔρmax = 0.61 e Å3
6 restraintsΔρmin = 0.65 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Cl10.60587 (19)0.31348 (7)0.37758 (5)0.0602 (2)
Cl20.0645 (2)0.04939 (8)0.20013 (4)0.0624 (3)
Cl30.6175 (3)0.39234 (9)0.10711 (6)0.1046 (4)
Cl40.8534 (3)0.85871 (10)0.01204 (6)0.0968 (4)
O10.0285 (5)0.5488 (2)0.25152 (13)0.0606 (6)
N10.0739 (5)0.2074 (2)0.40291 (12)0.0402 (5)
N20.2349 (5)0.30652 (19)0.31861 (12)0.0394 (5)
C10.4340 (6)0.1802 (2)0.36694 (15)0.0411 (6)
C20.3214 (6)0.1250 (2)0.29794 (15)0.0438 (6)
H20.3359480.1585340.2575800.053*
C30.1857 (6)0.0184 (2)0.28983 (14)0.0389 (6)
C40.1553 (6)0.0341 (2)0.34828 (14)0.0355 (5)
C50.2713 (6)0.0272 (2)0.41691 (15)0.0412 (6)
H50.2527180.0042150.4577880.049*
C60.4115 (6)0.1317 (2)0.42686 (15)0.0431 (6)
H60.4894840.1686770.4732420.052*
C70.0192 (5)0.1477 (2)0.34416 (14)0.0353 (5)
C80.1700 (6)0.2090 (2)0.29173 (14)0.0391 (6)
H80.2411260.1888790.2466650.047*
C90.0811 (6)0.3020 (2)0.38563 (14)0.0394 (6)
C100.0886 (8)0.3946 (3)0.43159 (17)0.0555 (8)
H10A0.2951840.3932430.4406600.083*
H10B0.0276770.3718820.4774510.083*
H10C0.0030740.4783790.4063450.083*
C110.4203 (6)0.3991 (2)0.27935 (16)0.0443 (6)
H11A0.5761600.3592170.2477970.053*
H11B0.5210050.4262780.3144290.053*
C120.2364 (6)0.5147 (2)0.23312 (15)0.0404 (6)
C130.3906 (6)0.5950 (2)0.16928 (14)0.0390 (6)
C140.5715 (8)0.5514 (3)0.11298 (16)0.0530 (7)
C150.7129 (8)0.6315 (3)0.05688 (17)0.0612 (9)
H150.8336920.5999430.0193260.073*
C160.6719 (8)0.7583 (3)0.05762 (17)0.0579 (8)
C170.4909 (8)0.8066 (3)0.11200 (17)0.0577 (8)
H170.4632360.8928150.1118800.069*
C180.3510 (7)0.7246 (3)0.16680 (16)0.0494 (7)
H180.2255850.7571110.2034020.059*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Cl10.0691 (5)0.0433 (4)0.0743 (6)0.0281 (4)0.0098 (4)0.0176 (4)
Cl20.0947 (6)0.0572 (5)0.0370 (4)0.0296 (4)0.0131 (4)0.0092 (3)
Cl30.1795 (11)0.0503 (5)0.0836 (7)0.0235 (6)0.0292 (7)0.0296 (5)
Cl40.1166 (9)0.0757 (7)0.0745 (7)0.0256 (6)0.0280 (6)0.0207 (5)
O10.0402 (12)0.0544 (13)0.0751 (15)0.0077 (9)0.0010 (10)0.0083 (11)
N10.0476 (13)0.0358 (11)0.0377 (12)0.0151 (10)0.0013 (10)0.0049 (9)
N20.0378 (12)0.0331 (11)0.0443 (12)0.0123 (9)0.0010 (9)0.0005 (9)
C10.0401 (14)0.0307 (12)0.0527 (16)0.0088 (11)0.0004 (12)0.0084 (11)
C20.0490 (16)0.0382 (14)0.0456 (15)0.0079 (12)0.0013 (12)0.0135 (12)
C30.0425 (14)0.0332 (13)0.0374 (13)0.0053 (11)0.0036 (11)0.0047 (10)
C40.0357 (13)0.0292 (12)0.0384 (13)0.0040 (10)0.0004 (10)0.0034 (10)
C50.0491 (15)0.0359 (13)0.0392 (14)0.0139 (11)0.0029 (11)0.0067 (11)
C60.0495 (16)0.0354 (13)0.0419 (15)0.0133 (12)0.0049 (12)0.0022 (11)
C70.0348 (13)0.0324 (12)0.0373 (13)0.0076 (10)0.0013 (10)0.0035 (10)
C80.0400 (14)0.0335 (13)0.0407 (14)0.0064 (11)0.0030 (11)0.0048 (11)
C90.0423 (14)0.0336 (13)0.0404 (14)0.0114 (11)0.0041 (11)0.0003 (11)
C100.076 (2)0.0478 (16)0.0491 (17)0.0281 (15)0.0038 (15)0.0090 (13)
C110.0366 (14)0.0380 (14)0.0535 (16)0.0135 (11)0.0018 (12)0.0027 (12)
C120.0369 (14)0.0374 (13)0.0476 (15)0.0118 (11)0.0050 (11)0.0051 (11)
C130.0430 (14)0.0368 (13)0.0362 (13)0.0102 (11)0.0050 (11)0.0019 (11)
C140.073 (2)0.0376 (14)0.0471 (16)0.0109 (14)0.0011 (14)0.0089 (12)
C150.074 (2)0.0563 (19)0.0449 (17)0.0052 (16)0.0107 (15)0.0064 (14)
C160.067 (2)0.0513 (17)0.0453 (17)0.0133 (15)0.0015 (15)0.0083 (13)
C170.078 (2)0.0339 (14)0.0532 (18)0.0094 (14)0.0031 (16)0.0019 (13)
C180.0582 (18)0.0393 (15)0.0455 (16)0.0052 (13)0.0001 (13)0.0032 (12)
Geometric parameters (Å, º) top
Cl1—C11.741 (3)C7—C81.364 (3)
Cl2—C31.745 (3)C8—H80.9300
Cl3—C141.745 (3)C9—C101.486 (4)
Cl4—C161.735 (3)C10—H10A0.9600
O1—C121.213 (3)C10—H10B0.9600
N1—C91.316 (3)C10—H10C0.9600
N1—C71.386 (3)C11—C121.515 (4)
N2—C91.359 (3)C11—H11A0.9700
N2—C81.375 (3)C11—H11B0.9700
N2—C111.449 (3)C12—C131.497 (4)
C1—C61.374 (4)C13—C141.377 (4)
C1—C21.379 (4)C13—C181.389 (4)
C2—C31.390 (4)C14—C151.382 (4)
C2—H20.9300C15—C161.371 (5)
C3—C41.384 (4)C15—H150.9300
C4—C51.399 (4)C16—C171.371 (4)
C4—C71.472 (3)C17—C181.377 (4)
C5—C61.376 (4)C17—H170.9300
C5—H50.9300C18—H180.9300
C6—H60.9300
C9—N1—C7106.1 (2)C9—C10—H10B109.5
C9—N2—C8107.1 (2)H10A—C10—H10B109.5
C9—N2—C11127.8 (2)C9—C10—H10C109.5
C8—N2—C11125.0 (2)H10A—C10—H10C109.5
C6—C1—C2120.9 (2)H10B—C10—H10C109.5
C6—C1—Cl1120.0 (2)N2—C11—C12112.6 (2)
C2—C1—Cl1119.1 (2)N2—C11—H11A109.1
C1—C2—C3118.7 (2)C12—C11—H11A109.1
C1—C2—H2120.6N2—C11—H11B109.1
C3—C2—H2120.6C12—C11—H11B109.1
C4—C3—C2122.8 (2)H11A—C11—H11B107.8
C4—C3—Cl2121.5 (2)O1—C12—C13119.7 (2)
C2—C3—Cl2115.7 (2)O1—C12—C11120.2 (2)
C3—C4—C5115.6 (2)C13—C12—C11119.8 (2)
C3—C4—C7126.1 (2)C14—C13—C18116.9 (3)
C5—C4—C7118.2 (2)C14—C13—C12125.7 (2)
C6—C5—C4123.2 (2)C18—C13—C12117.4 (2)
C6—C5—H5118.4C13—C14—C15122.1 (3)
C4—C5—H5118.4C13—C14—Cl3121.0 (2)
C1—C6—C5118.7 (2)C15—C14—Cl3116.8 (2)
C1—C6—H6120.6C16—C15—C14118.8 (3)
C5—C6—H6120.6C16—C15—H15120.6
C8—C7—N1109.1 (2)C14—C15—H15120.6
C8—C7—C4131.8 (2)C17—C16—C15121.3 (3)
N1—C7—C4119.0 (2)C17—C16—Cl4119.8 (2)
C7—C8—N2106.5 (2)C15—C16—Cl4118.9 (3)
C7—C8—H8126.8C16—C17—C18118.6 (3)
N2—C8—H8126.8C16—C17—H17120.7
N1—C9—N2111.3 (2)C18—C17—H17120.7
N1—C9—C10125.6 (2)C17—C18—C13122.3 (3)
N2—C9—C10123.1 (2)C17—C18—H18118.9
C9—C10—H10A109.5C13—C18—H18118.9
C6—C1—C2—C30.4 (4)C8—N2—C9—N10.5 (3)
Cl1—C1—C2—C3179.7 (2)C11—N2—C9—N1177.4 (2)
C1—C2—C3—C40.8 (4)C8—N2—C9—C10178.6 (3)
C1—C2—C3—Cl2177.3 (2)C11—N2—C9—C101.8 (4)
C2—C3—C4—C50.1 (4)C9—N2—C11—C1287.3 (3)
Cl2—C3—C4—C5177.9 (2)C8—N2—C11—C1289.0 (3)
C2—C3—C4—C7179.0 (2)N2—C11—C12—O129.3 (4)
Cl2—C3—C4—C71.0 (4)N2—C11—C12—C13157.4 (2)
C3—C4—C5—C61.0 (4)O1—C12—C13—C14133.7 (3)
C7—C4—C5—C6178.0 (2)C11—C12—C13—C1452.9 (4)
C2—C1—C6—C50.6 (4)O1—C12—C13—C1847.0 (4)
Cl1—C1—C6—C5179.2 (2)C11—C12—C13—C18126.4 (3)
C4—C5—C6—C11.4 (4)C18—C13—C14—C151.1 (5)
C9—N1—C7—C80.3 (3)C12—C13—C14—C15178.2 (3)
C9—N1—C7—C4178.0 (2)C18—C13—C14—Cl3175.8 (2)
C3—C4—C7—C818.7 (4)C12—C13—C14—Cl34.9 (4)
C5—C4—C7—C8162.5 (3)C13—C14—C15—C160.2 (5)
C3—C4—C7—N1163.6 (2)Cl3—C14—C15—C16177.2 (3)
C5—C4—C7—N115.3 (3)C14—C15—C16—C171.0 (5)
N1—C7—C8—N20.6 (3)C14—C15—C16—Cl4179.1 (3)
C4—C7—C8—N2177.3 (2)C15—C16—C17—C180.4 (5)
C9—N2—C8—C70.7 (3)Cl4—C16—C17—C18179.7 (3)
C11—N2—C8—C7177.6 (2)C16—C17—C18—C130.9 (5)
C7—N1—C9—N20.2 (3)C14—C13—C18—C171.7 (5)
C7—N1—C9—C10179.0 (3)C12—C13—C18—C17177.7 (3)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C5—H5···N10.932.472.825 (3)103
C8—H8···Cl20.932.593.110 (3)116
C11—H11A···Cl30.972.573.268 (3)129
IC50 values in µg/mL of (4e), (4f), and (5e)–(5g) against clinical isolates of C. neoformans a top
C50 in µg/mL; C. neoformans clinical isolates
CompoundATCC 32264IM983040IM972724IM042074IM983036IM00319IM983040
(4e)250250250250250250250
(4f)250250250> 250250250250
(5e)> 250> 250> 250> 250> 250> 250> 250
(5f)7.831.215.662.562.512562.5
(5g)> 250> 250> 250> 250> 250> 250> 250
Amph B0.50.250.250.120.250.50.25
a IC50: concentration at which the compounds inhibit the 50 % of the fungal growth
 

Follow Acta Cryst. B
Sign up for e-alerts
Follow Acta Cryst. on Twitter
Follow us on facebook
Sign up for RSS feeds