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In the structure of the title complex, [Cu(N3)2(C14H15N3O2)]·H2O, the Cu atom exhibits a CuN5O coordination environment formed by five N atoms, three from the N,N-bis­(2-pyridymeth­yl)glycine (bpg) ligand and two from azide anions, and one O atom belonging to bpg. The Cu—N distances range from 1.931 (3) to 1.960 (3) Å, with an average of 1.945 (3) Å, and the Cu—O distance is 1.900 (2) Å. The azide ligands are almost linear, with both N—N—N angles being 174.7 (4)°.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536805033350/ww6434sup1.cif
Contains datablocks I, global

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S1600536805033350/ww6434Isup2.hkl
Contains datablock I

CCDC reference: 289937

Key indicators

  • Single-crystal X-ray study
  • T = 293 K
  • Mean [sigma](C-C) = 0.006 Å
  • H-atom completeness 83%
  • R factor = 0.027
  • wR factor = 0.083
  • Data-to-parameter ratio = 11.2

checkCIF/PLATON results

No syntax errors found



Alert level A PLAT306_ALERT_2_A Isolated Oxygen Atom (H-atoms Missing ?) ....... O1W
Author Response: The H atoms of O1w can not be located from E-maps, so they have not been added.

Alert level B PLAT430_ALERT_2_B Short Inter D...A Contact O1W .. O2 .. 2.83 Ang.
Alert level C ABSTM02_ALERT_3_C The ratio of expected to reported Tmax/Tmin(RR') is < 0.90 Tmin and Tmax reported: 0.589 0.767 Tmin(prime) and Tmax expected: 0.741 0.767 RR(prime) = 0.795 Please check that your absorption correction is appropriate. PLAT041_ALERT_1_C Calc. and Rep. SumFormula Strings Differ .... ? PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ? PLAT061_ALERT_3_C Tmax/Tmin Range Test RR' too Large ............. 0.78 PLAT068_ALERT_1_C Reported F000 Differs from Calcd (or Missing)... ? PLAT199_ALERT_1_C Check the Reported _cell_measurement_temperature 293 K PLAT200_ALERT_1_C Check the Reported _diffrn_ambient_temperature . 293 K PLAT220_ALERT_2_C Large Non-Solvent N Ueq(max)/Ueq(min) ... 3.31 Ratio PLAT232_ALERT_2_C Hirshfeld Test Diff (M-X) Cu1 - O1 .. 5.72 su PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for N5 PLAT710_ALERT_4_C Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 25 N6 -CU1 -O1 -C8 -19.10 1.90 1.555 1.555 1.555 1.555 PLAT710_ALERT_4_C Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 29 N3 -CU1 -N7 -C6 63.00 6.00 1.555 1.555 1.555 1.555 PLAT710_ALERT_4_C Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 34 N3 -CU1 -N7 -C10 -57.00 6.00 1.555 1.555 1.555 1.555 PLAT710_ALERT_4_C Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 39 N3 -CU1 -N7 -C1 18.00 0.00 1.555 1.555 1.555 1.555 PLAT710_ALERT_4_C Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 64 N4 -N5 -N6 -CU1 173.00 4.00 1.555 1.555 1.555 1.555 PLAT710_ALERT_4_C Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 65 O1 -CU1 -N6 -N5 174.30 1.70 1.555 1.555 1.555 1.555 PLAT710_ALERT_4_C Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 73 N7 -CU1 -N3 -N2 -76.00 6.00 1.555 1.555 1.555 1.555 PLAT710_ALERT_4_C Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 86 CU1 -N3 -N2 -N1 -167.00 4.00 1.555 1.555 1.555 1.555
Alert level G FORMU01_ALERT_2_G There is a discrepancy between the atom counts in the _chemical_formula_sum and the formula from the _atom_site* data. Atom count from _chemical_formula_sum:C14 H17 Cu1 N9 O3 Atom count from the _atom_site data: C14 H14 Cu1 N9 O3 CELLZ01_ALERT_1_G Difference between formula and atom_site contents detected. CELLZ01_ALERT_1_G WARNING: H atoms missing from atom site list. Is this intentional? From the CIF: _cell_formula_units_Z 4 From the CIF: _chemical_formula_sum C14 H17 Cu N9 O3 TEST: Compare cell contents of formula and atom_site data atom Z*formula cif sites diff C 56.00 56.00 0.00 H 68.00 56.00 12.00 Cu 4.00 4.00 0.00 N 36.00 36.00 0.00 O 12.00 12.00 0.00 REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 25.49 From the CIF: _reflns_number_total 2734 Count of symmetry unique reflns 1582 Completeness (_total/calc) 172.82% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 1152 Fraction of Friedel pairs measured 0.728 Are heavy atom types Z>Si present yes
1 ALERT level A = In general: serious problem 1 ALERT level B = Potentially serious problem 18 ALERT level C = Check and explain 4 ALERT level G = General alerts; check 7 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 6 ALERT type 2 Indicator that the structure model may be wrong or deficient 2 ALERT type 3 Indicator that the structure quality may be low 9 ALERT type 4 Improvement, methodology, query or suggestion

Computing details top

Data collection: SMART (Bruker, 1998); cell refinement: SMART; data reduction: SAINT (Bruker, 1998; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 1998); software used to prepare material for publication: SHELXTL.

Diazido[N,N-bis(2-pyridylmethyl-κN)glycine-κ2N,O]copper(II) monohydrate top
Crystal data top
[Cu(N3)2(C14H15N3O2)]·H2OF(000) = 868
Mr = 422.91Dx = 1.655 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 6914 reflections
a = 13.5526 (6) Åθ = 2.7–31.1°
b = 9.5725 (5) ŵ = 1.33 mm1
c = 14.3309 (7) ÅT = 293 K
β = 114.072 (2)°Block, blue
V = 1697.49 (14) Å30.22 × 0.20 × 0.20 mm
Z = 4
Data collection top
Bruker SMART 1000 CCD area-detector
diffractometer
2734 independent reflections
Radiation source: fine-focus sealed tube2702 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.016
φ and ω scansθmax = 25.5°, θmin = 2.7°
Absorption correction: multi-scan
(SADABS; Bruker, 1998)
h = 1616
Tmin = 0.589, Tmax = 0.767k = 711
6245 measured reflectionsl = 1717
Refinement top
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.028H-atom parameters constrained
wR(F2) = 0.083 w = 1/[σ2(Fo2) + (0.0616P)2 + 0.3792P]
where P = (Fo2 + 2Fc2)/3
S = 1.13(Δ/σ)max = 0.001
2734 reflectionsΔρmax = 0.34 e Å3
245 parametersΔρmin = 0.35 e Å3
2 restraintsAbsolute structure: Flack (1983), 2647 Friedel pairs
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.06 (1)
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Cu10.50476 (3)0.06724 (3)0.75221 (3)0.02488 (12)
N90.6419 (3)0.0450 (3)0.7425 (2)0.0236 (6)
N80.3574 (3)0.0654 (2)0.7409 (3)0.0217 (7)
O10.48303 (16)0.2428 (2)0.68486 (15)0.0253 (4)
N70.44372 (19)0.0192 (3)0.61666 (18)0.0211 (5)
C80.4403 (2)0.2379 (4)0.5881 (2)0.0264 (6)
N50.5868 (2)0.1404 (3)0.8973 (2)0.0305 (6)
C100.3471 (3)0.1009 (4)0.6096 (2)0.0289 (6)
H10A0.36900.19260.63980.035*
H10B0.29770.11280.53860.035*
C260.6378 (3)0.0410 (3)0.6671 (2)0.0240 (6)
C250.7269 (3)0.0697 (3)0.6483 (3)0.0349 (8)
H25A0.72220.13110.59640.042*
C240.2923 (2)0.0212 (3)0.6665 (2)0.0254 (6)
C230.1842 (3)0.0407 (4)0.6488 (3)0.0381 (8)
H23A0.13970.09820.59620.046*
O20.4201 (3)0.3404 (3)0.5316 (2)0.0511 (7)
C300.3176 (3)0.1352 (3)0.7983 (2)0.0292 (6)
H30A0.36170.19680.84790.035*
C90.7356 (3)0.1097 (4)0.7995 (2)0.0317 (6)
H9A0.73800.17170.85040.038*
N60.5206 (2)0.1187 (3)0.8138 (2)0.0323 (6)
N30.5625 (2)0.1547 (3)0.88594 (19)0.0297 (6)
C60.4139 (3)0.0941 (4)0.5393 (3)0.0301 (7)
H6B0.33710.08890.49660.036*
H6C0.45240.08070.49590.036*
C50.2106 (3)0.1168 (4)0.7846 (3)0.0386 (7)
H5A0.18350.16530.82540.046*
C40.8295 (3)0.0853 (4)0.7836 (3)0.0373 (9)
H4A0.89370.13020.82370.045*
C30.1453 (3)0.0267 (5)0.7109 (3)0.0420 (8)
H3B0.07460.01150.70310.050*
C20.8254 (3)0.0054 (4)0.7084 (3)0.0380 (8)
H2A0.88710.02410.69720.046*
N40.6480 (3)0.1717 (4)0.9782 (3)0.0625 (10)
N20.5866 (2)0.2741 (3)0.8961 (2)0.0350 (7)
C10.5305 (2)0.1119 (4)0.6104 (2)0.0283 (6)
H1A0.51830.12640.53950.034*
H1B0.52970.20210.64090.034*
N10.6142 (4)0.3893 (5)0.9141 (3)0.0699 (12)
O1W0.3831 (4)0.6306 (4)0.4963 (3)0.0760 (10)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Cu10.02526 (18)0.02658 (19)0.02222 (18)0.00099 (15)0.00909 (14)0.00132 (15)
N90.0203 (14)0.0258 (13)0.0225 (15)0.0008 (11)0.0064 (12)0.0004 (11)
N80.0242 (16)0.0208 (16)0.0213 (16)0.0006 (8)0.0106 (13)0.0013 (8)
O10.0301 (11)0.0178 (10)0.0276 (11)0.0007 (8)0.0114 (9)0.0006 (8)
N70.0212 (11)0.0209 (12)0.0203 (11)0.0010 (10)0.0074 (10)0.0039 (10)
C80.0233 (14)0.0290 (17)0.0224 (16)0.0027 (13)0.0049 (11)0.0050 (13)
N50.0355 (14)0.0266 (14)0.0328 (16)0.0057 (12)0.0175 (14)0.0016 (12)
C100.0262 (15)0.0303 (15)0.0299 (16)0.0103 (13)0.0111 (13)0.0108 (13)
C260.0249 (14)0.0252 (14)0.0212 (14)0.0050 (11)0.0085 (12)0.0020 (12)
C250.0354 (19)0.040 (2)0.0334 (19)0.0048 (13)0.0187 (17)0.0016 (12)
C240.0239 (14)0.0276 (15)0.0259 (14)0.0045 (12)0.0112 (12)0.0012 (12)
C230.0287 (17)0.0425 (18)0.043 (2)0.0080 (14)0.0150 (16)0.0038 (16)
O20.0717 (19)0.0325 (14)0.0340 (14)0.0030 (13)0.0062 (13)0.0121 (11)
C300.0311 (15)0.0304 (17)0.0281 (15)0.0014 (12)0.0143 (13)0.0016 (12)
C90.0245 (15)0.0401 (18)0.0279 (16)0.0006 (14)0.0081 (13)0.0034 (14)
N60.0365 (15)0.0267 (14)0.0290 (16)0.0022 (11)0.0086 (13)0.0026 (11)
N30.0341 (13)0.0333 (15)0.0195 (13)0.0058 (11)0.0086 (10)0.0048 (10)
C60.0354 (17)0.0340 (16)0.0166 (14)0.0013 (14)0.0061 (13)0.0021 (13)
C50.0342 (17)0.047 (2)0.043 (2)0.0101 (16)0.0246 (16)0.0063 (17)
C40.0240 (19)0.048 (2)0.035 (2)0.0056 (14)0.0080 (16)0.0002 (15)
C30.0244 (18)0.052 (2)0.053 (2)0.0047 (16)0.0192 (17)0.001 (2)
C20.0261 (16)0.050 (2)0.0419 (19)0.0049 (15)0.0184 (15)0.0040 (16)
N40.071 (3)0.049 (2)0.0393 (19)0.0139 (18)0.0061 (18)0.0096 (16)
N20.0396 (16)0.044 (2)0.0242 (14)0.0098 (14)0.0155 (12)0.0124 (13)
C10.0249 (15)0.0303 (16)0.0309 (15)0.0007 (12)0.0125 (13)0.0114 (13)
N10.105 (4)0.046 (2)0.063 (2)0.032 (2)0.038 (2)0.022 (2)
O1W0.102 (3)0.0376 (17)0.083 (3)0.0062 (17)0.032 (2)0.0080 (16)
Geometric parameters (Å, º) top
Cu1—N31.940 (3)C26—C11.507 (4)
Cu1—N61.960 (3)C25—C21.402 (5)
Cu1—O11.900 (2)C25—H25A0.9300
Cu1—N71.957 (2)C24—C231.394 (5)
Cu1—N81.937 (4)C23—C31.366 (6)
Cu1—N91.931 (3)C23—H23A0.9300
N9—C261.342 (4)C30—C51.394 (5)
N9—C91.349 (5)C30—H30A0.9300
N8—C301.332 (5)C9—C41.400 (5)
N8—C241.354 (4)C9—H9A0.9300
O1—C81.266 (4)N3—N21.182 (4)
N7—C61.484 (4)C6—H6B0.9700
N7—C101.493 (4)C6—H6C0.9700
N7—C11.505 (4)C5—C31.371 (6)
C8—O21.231 (4)C5—H5A0.9300
C8—C61.519 (5)C4—C21.368 (6)
N5—N41.156 (5)C4—H4A0.9300
N5—N61.185 (4)C3—H3B0.9300
C10—C241.514 (4)C2—H2A0.9300
C10—H10A0.9700N2—N11.160 (5)
C10—H10B0.9700C1—H1A0.9700
C26—C251.367 (5)C1—H1B0.9700
O1—Cu1—N392.11 (10)C26—C25—H25A120.4
O1—Cu1—N6176.47 (11)C2—C25—H25A120.4
O1—Cu1—N787.39 (10)N8—C24—C23121.6 (3)
O1—Cu1—N891.42 (9)N8—C24—C10115.3 (3)
O1—Cu1—N990.87 (11)C23—C24—C10123.0 (3)
N3—Cu1—N691.19 (12)C3—C23—C24118.3 (3)
N3—Cu1—N7178.87 (12)C3—C23—H23A120.8
N7—Cu1—N689.29 (11)C24—C23—H23A120.8
N8—Cu1—N394.22 (12)N8—C30—C5120.7 (3)
N8—Cu1—N687.07 (12)N8—C30—H30A119.7
N8—Cu1—N784.77 (12)C5—C30—H30A119.7
N9—Cu1—N396.10 (13)N9—C9—C4121.3 (3)
N9—Cu1—N690.04 (12)N9—C9—H9A119.4
N9—Cu1—N784.93 (11)C4—C9—H9A119.4
N9—Cu1—N8169.34 (13)N5—N6—Cu1120.9 (2)
C26—N9—C9119.3 (3)N2—N3—Cu1121.3 (2)
C26—N9—Cu1113.6 (3)N7—C6—C8112.1 (3)
C9—N9—Cu1127.0 (3)N7—C6—H6B109.2
C30—N8—C24119.7 (3)C8—C6—H6B109.2
C30—N8—Cu1127.3 (3)N7—C6—H6C109.2
C24—N8—Cu1113.0 (2)C8—C6—H6C109.2
C8—O1—Cu1115.5 (2)H6B—C6—H6C107.9
C6—N7—C10111.6 (2)C3—C5—C30119.6 (3)
C6—N7—C1111.6 (2)C3—C5—H5A120.2
C10—N7—C1111.9 (2)C30—C5—H5A120.2
C6—N7—Cu1108.0 (2)C2—C4—C9119.1 (3)
C10—N7—Cu1107.01 (17)C2—C4—H4A120.4
C1—N7—Cu1106.52 (17)C9—C4—H4A120.4
O2—C8—O1124.8 (3)C23—C3—C5120.0 (3)
O2—C8—C6118.1 (3)C23—C3—H3B120.0
O1—C8—C6117.0 (3)C5—C3—H3B120.0
N4—N5—N6174.7 (4)C4—C2—C25119.0 (3)
N7—C10—C24108.0 (2)C4—C2—H2A120.5
N7—C10—H10A110.1C25—C2—H2A120.5
C24—C10—H10A110.1N1—N2—N3174.7 (4)
N7—C10—H10B110.1N7—C1—C26107.9 (2)
C24—C10—H10B110.1N7—C1—H1A110.1
H10A—C10—H10B108.4C26—C1—H1A110.1
N9—C26—C25122.1 (3)N7—C1—H1B110.1
N9—C26—C1115.1 (3)C26—C1—H1B110.1
C25—C26—C1122.6 (3)H1A—C1—H1B108.4
C26—C25—C2119.2 (3)
O1—Cu1—N9—C26101.4 (2)Cu1—N9—C26—C25180.0 (3)
N8—Cu1—N9—C261.0 (9)C9—N9—C26—C1178.0 (3)
N3—Cu1—N9—C26166.4 (2)Cu1—N9—C26—C14.6 (4)
N7—Cu1—N9—C2614.1 (2)N9—C26—C25—C21.2 (5)
N6—Cu1—N9—C2675.2 (2)C1—C26—C25—C2176.3 (3)
O1—Cu1—N9—C975.9 (3)C30—N8—C24—C230.7 (5)
N8—Cu1—N9—C9178.2 (6)Cu1—N8—C24—C23177.7 (3)
N3—Cu1—N9—C916.3 (3)C30—N8—C24—C10177.0 (3)
N7—Cu1—N9—C9163.2 (3)Cu1—N8—C24—C101.5 (4)
N6—Cu1—N9—C9107.5 (3)N7—C10—C24—N825.3 (4)
O1—Cu1—N8—C3078.2 (3)N7—C10—C24—C23158.5 (3)
N9—Cu1—N8—C30179.5 (6)N8—C24—C23—C32.0 (5)
N3—Cu1—N8—C3014.0 (3)C10—C24—C23—C3173.9 (4)
N7—Cu1—N8—C30165.4 (3)C24—N8—C30—C52.0 (5)
N6—Cu1—N8—C30105.0 (3)Cu1—N8—C30—C5176.2 (2)
O1—Cu1—N8—C24103.5 (2)C26—N9—C9—C42.1 (5)
N9—Cu1—N8—C241.2 (9)Cu1—N9—C9—C4179.2 (3)
N3—Cu1—N8—C24164.2 (2)N4—N5—N6—Cu1173 (4)
N7—Cu1—N8—C2416.3 (2)O1—Cu1—N6—N5174.3 (17)
N6—Cu1—N8—C2473.3 (2)N9—Cu1—N6—N569.4 (3)
N9—Cu1—O1—C885.8 (2)N8—Cu1—N6—N5120.9 (3)
N8—Cu1—O1—C883.7 (2)N3—Cu1—N6—N526.7 (3)
N3—Cu1—O1—C8178.0 (2)N7—Cu1—N6—N5154.3 (3)
N7—Cu1—O1—C81.0 (2)O1—Cu1—N3—N212.3 (3)
N6—Cu1—O1—C819.1 (19)N9—Cu1—N3—N278.8 (3)
O1—Cu1—N7—C60.8 (2)N8—Cu1—N3—N2103.9 (3)
N9—Cu1—N7—C691.9 (2)N7—Cu1—N3—N276 (6)
N8—Cu1—N7—C690.9 (2)N6—Cu1—N3—N2169.0 (3)
N3—Cu1—N7—C663 (6)C10—N7—C6—C8117.9 (3)
N6—Cu1—N7—C6178.0 (2)C1—N7—C6—C8116.2 (3)
O1—Cu1—N7—C10121.0 (2)Cu1—N7—C6—C80.5 (3)
N9—Cu1—N7—C10147.9 (2)O2—C8—C6—N7179.4 (3)
N8—Cu1—N7—C1029.4 (2)O1—C8—C6—N70.2 (4)
N3—Cu1—N7—C1057 (6)N8—C30—C5—C30.5 (5)
N6—Cu1—N7—C1057.8 (2)N9—C9—C4—C20.3 (6)
O1—Cu1—N7—C1119.2 (2)C24—C23—C3—C53.5 (6)
N9—Cu1—N7—C128.1 (2)C30—C5—C3—C232.3 (6)
N8—Cu1—N7—C1149.2 (2)C9—C4—C2—C251.0 (6)
N3—Cu1—N7—C1177 (67)C26—C25—C2—C40.5 (6)
N6—Cu1—N7—C162.0 (2)Cu1—N3—N2—N1167 (4)
Cu1—O1—C8—O2180.0 (3)C6—N7—C1—C2681.5 (3)
Cu1—O1—C8—C60.9 (3)C10—N7—C1—C26152.7 (2)
C6—N7—C10—C2481.9 (3)Cu1—N7—C1—C2636.1 (3)
C1—N7—C10—C24152.3 (3)N9—C26—C1—N727.5 (4)
Cu1—N7—C10—C2436.0 (3)C25—C26—C1—N7157.1 (3)
C9—N9—C26—C252.5 (5)
 

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