Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536804032866/ww6316sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536804032866/ww6316Isup2.hkl |
CCDC reference: 262279
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.011 Å
- R factor = 0.057
- wR factor = 0.138
- Data-to-parameter ratio = 15.4
checkCIF/PLATON results
No syntax errors found
Alert level A PLAT052_ALERT_1_A (Proper) Absorption Correction Method Missing .. ? PLAT242_ALERT_2_A Check Low Ueq as Compared to Neighbors for C13
Alert level B PLAT029_ALERT_3_B _diffrn_measured_fraction_theta_full Low ....... 0.94 PLAT242_ALERT_2_B Check Low Ueq as Compared to Neighbors for C9
Alert level C PLAT063_ALERT_3_C Crystal Probably too Large for Beam Size ....... 0.65 mm PLAT125_ALERT_4_C No _symmetry_space_group_name_Hall Given ....... ? PLAT199_ALERT_1_C Check the Reported cell_measurement_temperature 293 PLAT213_ALERT_2_C Atom F6 has ADP max/min Ratio ............. 3.20 prolat PLAT342_ALERT_3_C Low Bond Precision on C-C bonds (x 1000) Ang ... 11 PLAT420_ALERT_2_C D-H Without Acceptor N1 - H1A ... ? PLAT420_ALERT_2_C D-H Without Acceptor N1 - H1B ... ?
2 ALERT level A = In general: serious problem 2 ALERT level B = Potentially serious problem 7 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 2 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 5 ALERT type 2 Indicator that the structure model may be wrong or deficient 3 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion
Data collection: CAD-4 Operations Manual (Enraf-Nonius, 1977); cell refinement: CAD-4 Operations Manual; data reduction: PROCESS in MolEN (Fair, 1990); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97.
[Pd(C8H11N)(C5F6O2)] | F(000) = 1696 |
Mr = 433.63 | Dx = 1.951 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
a = 23.283 (12) Å | Cell parameters from 25 reflections |
b = 8.824 (6) Å | θ = 2.5–27.0° |
c = 15.562 (10) Å | µ = 1.33 mm−1 |
β = 112.5743 (13)° | T = 293 K |
V = 2952 (3) Å3 | Rod, yellow |
Z = 8 | 0.65 × 0.12 × 0.10 mm |
Enraf-Nonius CAD-4 diffractometer | 2123 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.064 |
Graphite monochromator | θmax = 27.0°, θmin = 2.5° |
θ/2θ scans | h = 0→29 |
Absorption correction: ψ scan (North et al., 1968) | k = 0→11 |
Tmin = 0.478, Tmax = 0.878 | l = −19→18 |
3450 measured reflections | 3 standard reflections every 120 min |
3220 independent reflections | intensity decay: none |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.057 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.138 | H-atom parameters constrained |
S = 0.99 | w = 1/[σ2(Fo2) + (0.075P)2] where P = (Fo2 + 2Fc2)/3 |
3220 reflections | (Δ/σ)max < 0.001 |
209 parameters | Δρmax = 1.18 e Å−3 |
0 restraints | Δρmin = −1.33 e Å−3 |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Pd1 | 0.03237 (2) | 0.47106 (6) | 0.17376 (3) | 0.02853 (17) | |
O1 | 0.1181 (2) | 0.5506 (6) | 0.2713 (3) | 0.0388 (12) | |
O2 | 0.0579 (2) | 0.2536 (5) | 0.2123 (3) | 0.0355 (11) | |
N1 | 0.0039 (3) | 0.6793 (7) | 0.1197 (4) | 0.0398 (14) | |
H1A | 0.0167 | 0.7517 | 0.1686 | 0.052* | |
H1B | 0.0236 | 0.7041 | 0.0782 | 0.052* | |
C1 | −0.0468 (3) | 0.4126 (8) | 0.0756 (4) | 0.0292 (14) | |
C2 | −0.0649 (3) | 0.2673 (8) | 0.0458 (5) | 0.0341 (16) | |
H2 | −0.0386 | 0.1819 | 0.0782 | 0.044* | |
C3 | −0.1200 (3) | 0.2398 (9) | −0.0298 (5) | 0.0409 (17) | |
H3 | −0.1329 | 0.1355 | −0.0497 | 0.053* | |
C4 | −0.1565 (3) | 0.3597 (10) | −0.0769 (5) | 0.0466 (19) | |
H4 | −0.1944 | 0.3407 | −0.1319 | 0.061* | |
C5 | −0.1400 (3) | 0.5059 (9) | −0.0468 (5) | 0.045 (2) | |
H5 | −0.1671 | 0.5900 | −0.0793 | 0.058* | |
C6 | −0.0851 (3) | 0.5359 (9) | 0.0292 (5) | 0.0345 (14) | |
C7 | −0.0642 (3) | 0.6899 (8) | 0.0694 (5) | 0.0396 (17) | |
H7 | −0.0824 | 0.7089 | 0.1156 | 0.051* | |
C8 | −0.0830 (4) | 0.8183 (10) | 0.0011 (6) | 0.059 (2) | |
H8A | −0.0674 | 0.9139 | 0.0338 | 0.076* | |
H8B | −0.1285 | 0.8224 | −0.0290 | 0.076* | |
H8C | −0.0654 | 0.8026 | −0.0463 | 0.076* | |
C9 | 0.2199 (3) | 0.5476 (11) | 0.3780 (6) | 0.057 (2) | |
C10 | 0.1606 (3) | 0.4641 (10) | 0.3194 (5) | 0.0389 (16) | |
C11 | 0.1601 (3) | 0.3080 (9) | 0.3224 (5) | 0.0452 (19) | |
H11 | 0.1978 | 0.2571 | 0.3646 | 0.059* | |
C12 | 0.1104 (4) | 0.2181 (8) | 0.2702 (5) | 0.0378 (17) | |
C13 | 0.1190 (4) | 0.0483 (9) | 0.2815 (5) | 0.050 (2) | |
F1 | 0.2556 (2) | 0.4726 (7) | 0.4524 (4) | 0.0892 (19) | |
F2 | 0.2095 (3) | 0.6762 (7) | 0.4098 (5) | 0.102 (2) | |
F3 | 0.2542 (3) | 0.5695 (13) | 0.3296 (5) | 0.140 (4) | |
F4 | 0.1186 (5) | −0.0163 (7) | 0.2065 (5) | 0.125 (3) | |
F5 | 0.0715 (4) | −0.0190 (7) | 0.2928 (6) | 0.118 (3) | |
F6 | 0.1656 (4) | 0.0038 (7) | 0.3502 (7) | 0.160 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Pd1 | 0.0293 (3) | 0.0316 (3) | 0.0253 (2) | −0.0017 (3) | 0.01120 (18) | −0.0009 (2) |
O1 | 0.034 (3) | 0.045 (3) | 0.035 (3) | −0.001 (2) | 0.011 (2) | −0.004 (2) |
O2 | 0.040 (3) | 0.029 (3) | 0.035 (3) | 0.005 (2) | 0.011 (2) | 0.002 (2) |
N1 | 0.043 (3) | 0.034 (4) | 0.040 (3) | −0.002 (3) | 0.012 (3) | 0.000 (3) |
C1 | 0.030 (3) | 0.036 (4) | 0.026 (3) | −0.003 (3) | 0.016 (3) | 0.001 (3) |
C2 | 0.038 (4) | 0.030 (4) | 0.038 (4) | −0.005 (3) | 0.019 (3) | 0.000 (3) |
C3 | 0.038 (4) | 0.045 (5) | 0.041 (4) | −0.016 (3) | 0.017 (3) | −0.008 (3) |
C4 | 0.033 (4) | 0.061 (5) | 0.041 (4) | −0.011 (4) | 0.009 (3) | −0.005 (4) |
C5 | 0.034 (4) | 0.050 (6) | 0.043 (4) | 0.005 (3) | 0.007 (3) | 0.006 (3) |
C6 | 0.031 (3) | 0.040 (4) | 0.034 (3) | −0.004 (3) | 0.013 (3) | 0.002 (3) |
C7 | 0.039 (4) | 0.036 (4) | 0.043 (4) | 0.002 (3) | 0.014 (3) | −0.006 (3) |
C8 | 0.066 (6) | 0.042 (5) | 0.061 (6) | 0.013 (4) | 0.017 (5) | 0.019 (4) |
C9 | 0.028 (4) | 0.076 (7) | 0.061 (5) | −0.003 (4) | 0.010 (4) | −0.015 (5) |
C10 | 0.026 (3) | 0.057 (5) | 0.033 (3) | 0.004 (3) | 0.009 (3) | −0.010 (4) |
C11 | 0.029 (4) | 0.053 (5) | 0.048 (4) | 0.014 (3) | 0.010 (3) | 0.001 (4) |
C12 | 0.052 (4) | 0.037 (4) | 0.030 (4) | 0.011 (3) | 0.022 (3) | 0.004 (3) |
C13 | 0.065 (5) | 0.041 (5) | 0.039 (4) | 0.007 (4) | 0.013 (4) | 0.001 (3) |
F1 | 0.050 (3) | 0.107 (5) | 0.076 (4) | −0.007 (3) | −0.015 (3) | −0.008 (3) |
F2 | 0.059 (4) | 0.076 (4) | 0.131 (6) | −0.009 (3) | −0.008 (4) | −0.043 (4) |
F3 | 0.070 (4) | 0.265 (11) | 0.093 (5) | −0.085 (6) | 0.041 (4) | −0.037 (6) |
F4 | 0.249 (10) | 0.057 (4) | 0.098 (5) | 0.042 (5) | 0.100 (6) | 0.002 (3) |
F5 | 0.154 (7) | 0.050 (4) | 0.190 (9) | 0.012 (4) | 0.111 (7) | 0.027 (4) |
F6 | 0.156 (7) | 0.059 (5) | 0.151 (7) | 0.033 (4) | −0.069 (6) | 0.007 (4) |
Pd1—C1 | 1.959 (6) | C5—H5 | 0.9800 |
Pd1—N1 | 2.024 (6) | C6—C7 | 1.496 (10) |
Pd1—O2 | 2.030 (5) | C7—C8 | 1.500 (10) |
Pd1—O1 | 2.110 (5) | C7—H7 | 0.9800 |
O1—C10 | 1.246 (9) | C8—H8A | 0.9801 |
O2—C12 | 1.248 (8) | C8—H8B | 0.9801 |
N1—C7 | 1.478 (9) | C8—H8C | 0.9801 |
N1—H1A | 0.9500 | C9—F2 | 1.297 (10) |
N1—H1B | 0.9500 | C9—F3 | 1.304 (10) |
C1—C2 | 1.373 (9) | C9—F1 | 1.315 (11) |
C1—C6 | 1.415 (10) | C9—C10 | 1.522 (10) |
C2—C3 | 1.389 (10) | C10—C11 | 1.379 (11) |
C2—H2 | 0.9800 | C11—C12 | 1.382 (11) |
C3—C4 | 1.378 (11) | C11—H11 | 0.9800 |
C3—H3 | 0.9800 | C12—C13 | 1.512 (11) |
C4—C5 | 1.376 (11) | C13—F6 | 1.259 (10) |
C4—H4 | 0.9800 | C13—F4 | 1.296 (10) |
C5—C6 | 1.394 (9) | C13—F5 | 1.326 (11) |
C1—Pd1—N1 | 81.7 (3) | N1—C7—C8 | 112.7 (7) |
C1—Pd1—O2 | 93.6 (2) | C6—C7—C8 | 115.5 (7) |
N1—Pd1—O2 | 173.3 (2) | N1—C7—H7 | 107.5 |
C1—Pd1—O1 | 174.7 (2) | C6—C7—H7 | 107.5 |
N1—Pd1—O1 | 93.8 (2) | C8—C7—H7 | 107.5 |
O2—Pd1—O1 | 90.74 (19) | C7—C8—H8A | 109.5 |
C10—O1—Pd1 | 122.8 (5) | C7—C8—H8B | 109.5 |
C12—O2—Pd1 | 123.0 (5) | H8A—C8—H8B | 109.5 |
C7—N1—Pd1 | 113.0 (5) | C7—C8—H8C | 109.5 |
C7—N1—H1A | 109.0 | H8A—C8—H8C | 109.5 |
Pd1—N1—H1A | 109.0 | H8B—C8—H8C | 109.5 |
C7—N1—H1B | 109.0 | F2—C9—F3 | 109.6 (9) |
Pd1—N1—H1B | 109.0 | F2—C9—F1 | 104.6 (8) |
H1A—N1—H1B | 107.8 | F3—C9—F1 | 105.3 (7) |
C2—C1—C6 | 119.6 (6) | F2—C9—C10 | 113.1 (7) |
C2—C1—Pd1 | 125.7 (5) | F3—C9—C10 | 109.9 (7) |
C6—C1—Pd1 | 114.5 (5) | F1—C9—C10 | 113.9 (8) |
C1—C2—C3 | 120.8 (7) | O1—C10—C11 | 128.1 (7) |
C1—C2—H2 | 119.6 | O1—C10—C9 | 113.1 (8) |
C3—C2—H2 | 119.6 | C11—C10—C9 | 118.7 (7) |
C4—C3—C2 | 119.8 (7) | C10—C11—C12 | 124.7 (7) |
C4—C3—H3 | 120.1 | C10—C11—H11 | 117.6 |
C2—C3—H3 | 120.1 | C12—C11—H11 | 117.6 |
C5—C4—C3 | 120.3 (7) | O2—C12—C11 | 130.4 (7) |
C5—C4—H4 | 119.9 | O2—C12—C13 | 112.5 (7) |
C3—C4—H4 | 119.9 | C11—C12—C13 | 117.2 (7) |
C4—C5—C6 | 120.8 (7) | F6—C13—F4 | 109.5 (9) |
C4—C5—H5 | 119.6 | F6—C13—F5 | 103.8 (9) |
C6—C5—H5 | 119.6 | F4—C13—F5 | 101.9 (8) |
C5—C6—C1 | 118.7 (7) | F6—C13—C12 | 116.1 (7) |
C5—C6—C7 | 124.8 (7) | F4—C13—C12 | 112.1 (7) |
C1—C6—C7 | 116.4 (6) | F5—C13—C12 | 112.3 (7) |
N1—C7—C6 | 105.9 (6) |
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